@nerviq/cli 1.18.0 → 1.19.0

package/src/analyze.js

@@ -1,951 +1,951 @@
-/**
- * Project scanner + recommendation layer for augment and suggest-only modes.
- * Produces a structured repo-aware analysis without writing files.
- */
-
-const path = require('path');
-const { audit } = require('./audit');
-const { ProjectContext } = require('./context');
-const { CodexProjectContext } = require('./codex/context');
-const { STACKS } = require('./techniques');
-const { detectDomainPacks } = require('./domain-packs');
-const { detectCodexDomainPacks } = require('./codex/domain-packs');
-const { recommendMcpPacks } = require('./mcp-packs');
-const { collectClaudeDenyRules } = require('./permission-rules');
-const { buildRepoArchetypeProfile } = require('./repo-archetype');
-const { buildOperatingProfile } = require('./operating-profile');
-const { buildAdoptionAdvisor } = require('./adoption-advisor');
-
-const COLORS = {
-  reset: '\x1b[0m',
-  bold: '\x1b[1m',
-  dim: '\x1b[2m',
-  red: '\x1b[31m',
-  green: '\x1b[32m',
-  yellow: '\x1b[33m',
-  blue: '\x1b[36m',
-  magenta: '\x1b[35m',
-};
-
-function c(text, color) {
-  return `${COLORS[color] || ''}${text}${COLORS.reset}`;
-}
-
-function escapeRegex(value) {
-  return value.replace(/[.*+?^${}()|[\]\\]/g, '\\$&');
-}
-
-function extractTomlSection(content, sectionName) {
-  const pattern = new RegExp(`\\[${escapeRegex(sectionName)}\\]([\\s\\S]*?)(?:\\n\\s*\\[|$)`);
-  const match = content.match(pattern);
-  return match ? match[1] : null;
-}
-
-function extractTomlValue(sectionContent, key) {
-  if (!sectionContent) return null;
-  const pattern = new RegExp(`^\\s*${escapeRegex(key)}\\s*=\\s*["']([^"']+)["']`, 'm');
-  const match = sectionContent.match(pattern);
-  return match ? match[1].trim() : null;
-}
-
-function detectProjectMetadata(ctx) {
-  const pkg = ctx.jsonFile('package.json');
-  if (pkg && (pkg.name || pkg.description)) {
-    return {
-      name: pkg.name || path.basename(ctx.dir),
-      description: pkg.description || '',
-    };
-  }
-
-  const pyproject = ctx.fileContent('pyproject.toml') || '';
-  if (pyproject) {
-    const projectSection = extractTomlSection(pyproject, 'project');
-    const poetrySection = extractTomlSection(pyproject, 'tool.poetry');
-    const name = extractTomlValue(projectSection, 'name') ||
-      extractTomlValue(poetrySection, 'name');
-    const description = extractTomlValue(projectSection, 'description') ||
-      extractTomlValue(poetrySection, 'description');
-
-    if (name || description) {
-      return {
-        name: name || path.basename(ctx.dir),
-        description: description || '',
-      };
-    }
-  }
-
-  return {
-    name: path.basename(ctx.dir),
-    description: '',
-  };
-}
-
-function detectMainDirs(ctx) {
-  const candidates = [
-    'src', 'lib', 'app', 'pages', 'components', 'api', 'routes', 'utils', 'helpers',
-    'services', 'models', 'controllers', 'views', 'public', 'assets', 'config', 'tests',
-    'test', '__tests__', 'spec', 'scripts', 'prisma', 'db', 'middleware', 'hooks',
-    'agents', 'chains', 'workers', 'jobs', 'dags', 'macros', 'migrations',
-    'src/components', 'src/app', 'src/pages', 'src/api', 'src/lib', 'src/hooks',
-    'src/utils', 'src/services', 'src/models', 'src/middleware', 'src/agents',
-    'src/chains', 'src/workers', 'src/jobs', 'src/app/api', 'app/api',
-    'models/staging', 'models/marts'
-  ];
-
-  const dirs = [];
-  for (const dir of candidates) {
-    if (ctx.hasDir(dir)) {
-      dirs.push(dir);
-    }
-  }
-  return dirs;
-}
-
-function collectClaudeAssets(ctx) {
-  const sharedSettings = ctx.jsonFile('.claude/settings.json');
-  const localSettings = ctx.jsonFile('.claude/settings.local.json');
-  const settings = sharedSettings || localSettings || null;
-  const denyRules = collectClaudeDenyRules(ctx);
-
-  const assetFiles = {
-    claudeMd: ctx.fileContent('CLAUDE.md') ? 'CLAUDE.md' : (ctx.fileContent('.claude/CLAUDE.md') ? '.claude/CLAUDE.md' : null),
-    settings: sharedSettings ? '.claude/settings.json' : (localSettings ? '.claude/settings.local.json' : null),
-    commands: ctx.hasDir('.claude/commands') ? ctx.dirFiles('.claude/commands') : [],
-    rules: ctx.hasDir('.claude/rules') ? ctx.dirFiles('.claude/rules') : [],
-    hooks: ctx.hasDir('.claude/hooks') ? ctx.dirFiles('.claude/hooks') : [],
-    agents: ctx.hasDir('.claude/agents') ? ctx.dirFiles('.claude/agents') : [],
-    skills: ctx.hasDir('.claude/skills') ? ctx.dirFiles('.claude/skills') : [],
-  };
-
-  return {
-    label: 'Claude',
-    instructionLabel: 'CLAUDE.md',
-    configLabel: 'Settings',
-    instructionPath: assetFiles.claudeMd,
-    configPath: assetFiles.settings,
-    files: assetFiles,
-    counts: {
-      commands: assetFiles.commands.length,
-      rules: assetFiles.rules.length,
-      hooks: assetFiles.hooks.length,
-      agents: assetFiles.agents.length,
-      skills: assetFiles.skills.length,
-      mcpServers: settings && settings.mcpServers ? Object.keys(settings.mcpServers).length : 0,
-    },
-    permissions: settings && settings.permissions ? {
-      defaultMode: settings.permissions.defaultMode || null,
-      hasDenyRules: denyRules.length > 0,
-    } : null,
-    settingsSource: assetFiles.settings,
-    summaryLine: `Commands: ${assetFiles.commands.length} | Rules: ${assetFiles.rules.length} | Hooks: ${assetFiles.hooks.length} | Agents: ${assetFiles.agents.length} | Skills: ${assetFiles.skills.length} | MCP servers: ${settings && settings.mcpServers ? Object.keys(settings.mcpServers).length : 0}`,
-  };
-}
-
-function collectCodexAssets(ctx) {
-  const agentsMd = ctx.agentsMdPath ? ctx.agentsMdPath() : null;
-  const configPath = ctx.fileContent('.codex/config.toml') ? '.codex/config.toml' : null;
-  const hooksJson = ctx.hooksJsonContent ? ctx.hooksJsonContent() : null;
-  const rules = ctx.ruleFiles ? ctx.ruleFiles() : [];
-  const skills = ctx.skillDirs ? ctx.skillDirs().map((name) => `.agents/skills/${name}`) : [];
-  const agents = ctx.customAgentFiles ? ctx.customAgentFiles().map((file) => `.codex/agents/${file}`) : [];
-  const workflows = ctx.workflowFiles ? ctx.workflowFiles() : [];
-  const mcpServers = ctx.mcpServers ? Object.keys(ctx.mcpServers() || {}).length : 0;
-
-  return {
-    label: 'Codex',
-    instructionLabel: 'AGENTS.md',
-    configLabel: 'Config',
-    instructionPath: agentsMd,
-    configPath,
-    files: {
-      agentsMd,
-      config: configPath,
-      rules,
-      hooks: hooksJson ? ['.codex/hooks.json'] : [],
-      skills,
-      agents,
-      workflows,
-    },
-    counts: {
-      rules: rules.length,
-      hooks: hooksJson ? 1 : 0,
-      skills: skills.length,
-      agents: agents.length,
-      workflows: workflows.length,
-      mcpServers,
-    },
-    trust: {
-      approvalPolicy: ctx.configValue ? (ctx.configValue('approval_policy') || null) : null,
-      sandboxMode: ctx.configValue ? (ctx.configValue('sandbox_mode') || null) : null,
-      isTrustedProject: ctx.isProjectTrusted ? ctx.isProjectTrusted() : false,
-    },
-    summaryLine: `Rules: ${rules.length} | Hooks: ${hooksJson ? 1 : 0} | Skills: ${skills.length} | Subagents: ${agents.length} | Workflows: ${workflows.length} | MCP servers: ${mcpServers}`,
-  };
-}
-
-function detectMaturity(platform, assets) {
-  if (platform === 'codex') {
-    let score = 0;
-    if (assets.instructionPath) score += 2;
-    if (assets.configPath) score += 2;
-    if (assets.counts.rules > 0) score += 1;
-    if (assets.counts.hooks > 0) score += 1;
-    if (assets.counts.skills > 0) score += 1;
-    if (assets.counts.agents > 0) score += 1;
-    if (assets.counts.workflows > 0) score += 1;
-    if (assets.counts.mcpServers > 0) score += 1;
-
-    if (score === 0) return 'none';
-    if (score <= 2) return 'starter';
-    if (score <= 5) return 'developing';
-    return 'mature';
-  }
-
-  let score = 0;
-  if (assets.files.claudeMd) score += 2;
-  if (assets.files.settings) score += 1;
-  if (assets.counts.rules > 0) score += 1;
-  if (assets.counts.commands > 0) score += 1;
-  if (assets.counts.hooks > 0) score += 1;
-  if (assets.counts.agents > 0) score += 1;
-  if (assets.counts.skills > 0) score += 1;
-
-  if (score === 0) return 'none';
-  if (score <= 2) return 'starter';
-  if (score <= 5) return 'developing';
-  return 'mature';
-}
-
-function riskFromImpact(impact) {
-  if (impact === 'critical') return 'high';
-  if (impact === 'high') return 'medium';
-  return 'low';
-}
-
-function moduleFromCategory(category) {
-  const map = {
-    memory: 'CLAUDE.md',
-    instructions: 'AGENTS.md / instructions',
-    config: 'config.toml',
-    trust: 'trust-and-safety',
-    rules: 'rules',
-    hooks: 'hooks',
-    mcp: 'mcp',
-    skills: 'skills',
-    agents: 'subagents',
-    review: 'review',
-    automation: 'automation',
-    local: 'local-environments',
-    quality: 'verification',
-    git: 'safety',
-    workflow: 'commands-agents-skills',
-    security: 'permissions',
-    automation: 'hooks',
-    design: 'design-rules',
-    devops: 'ci-devops',
-    hygiene: 'project-hygiene',
-    performance: 'context-management',
-    tools: 'mcp-tools',
-    prompting: 'prompt-structure',
-    features: 'modern-claude-features',
-    'quality-deep': 'quality-deep',
-  };
-  return map[category] || category;
-}
-
-const STRENGTH_REASONS = {
-  claudeMd: 'Foundation of Claude workflow. Every session benefits from this.',
-  mermaidArchitecture: 'Architecture diagram saves 73% tokens vs prose — high-value asset.',
-  verificationLoop: 'Claude can self-verify, catching errors before human review.',
-  hooks: 'Automated enforcement (100% vs 80% from instructions alone).',
-  hooksInSettings: 'Hook registration in settings ensures consistent automation.',
-  preToolUseHook: 'Pre-execution validation adds a safety layer.',
-  postToolUseHook: 'Post-execution automation catches issues immediately.',
-  sessionStartHook: 'Session initialization ensures consistent starting state.',
-  customCommands: 'Reusable workflows encoded as one-liner commands.',
-  settingsPermissions: 'Explicit permissions prevent accidental dangerous operations.',
-  permissionDeny: 'Deny rules block risky operations at the system level.',
-  pathRules: 'Scoped rules ensure different code areas get appropriate guidance.',
-  fewShotExamples: 'Code examples guide Claude to match your conventions.',
-  constraintBlocks: 'XML constraint blocks improve rule adherence by 40%.',
-  xmlTags: 'Structured prompt sections improve consistency.',
-  context7Mcp: 'Real-time docs eliminate version-mismatch hallucinations.',
-  mcpServers: 'External tool integration extends Claude capabilities.',
-  compactionAwareness: 'Context management keeps sessions efficient.',
-  agents: 'Specialized agents delegate complex tasks effectively.',
-  noSecretsInClaude: 'No secrets in config — good security hygiene.',
-  gitIgnoreEnv: 'Environment files are properly excluded from git.',
-  codexAgentsMd: 'Codex has a repo-native instruction surface instead of starting cold.',
-  codexAgentsMdSubstantive: 'A substantive AGENTS.md reduces drift and gives Codex a stable repo contract.',
-  codexAgentsVerificationCommands: 'Codex can verify its changes because the repo states how to test and build.',
-  codexAgentsArchitecture: 'Codex has a repo map to orient itself before editing.',
-  codexConfigExists: 'Codex runtime posture is reviewable because the project config is versioned.',
-  codexModelExplicit: 'The primary Codex model is explicit instead of silently inheriting defaults.',
-  codexReasoningEffortExplicit: 'Reasoning depth is explicit and reviewable.',
-  codexWeakTaskModelExplicit: 'Delegation for weaker tasks is explicit and cost-aware.',
-  codexApprovalPolicyExplicit: 'Approval behavior is explicit, predictable, and reviewable.',
-  codexSandboxExplicit: 'Sandbox posture is explicit instead of accidental.',
-  codexHistorySendToServerExplicit: 'History sync posture is reviewable in version control.',
-  codexRulesForRiskyCommands: 'Risky command classes are governed by Codex-native rules.',
-  codexHooksFeatureExplicit: 'Hook posture is explicit instead of implied.',
-  codexMcpExternalToolsConfigured: 'Codex has live MCP context instead of relying only on static repo files.',
-  codexSkillsDirPresentWhenUsed: 'Repo-local skills keep specialization versioned and reviewable.',
-  codexSkillsHaveMetadata: 'Skill metadata is explicit enough for reliable invocation.',
-  codexCustomAgentsRequiredFields: 'Custom subagents are structured and reviewable.',
-  codexExecUsageSafe: 'Codex automation posture is documented and safer to operate.',
-  codexGitHubActionSafeStrategy: 'CI posture is explicit and safer for Codex in automation.',
-  codexReviewWorkflowDocumented: 'A documented review path makes risky Codex changes easier to control.',
-  codexArtifactsSharedIntentionally: 'Codex repo artifacts are shared intentionally instead of being hidden from the team.',
-  codexAgentsMentionModernFeatures: 'AGENTS.md acknowledges the modern Codex surfaces the repo actually uses.',
-};
-
-function toStrengths(results) {
-  return results
-    .filter(r => r.passed === true && (r.impact === 'critical' || r.impact === 'high' || r.impact === 'medium'))
-    .sort((a, b) => {
-      const order = { critical: 3, high: 2, medium: 1, low: 0 };
-      return (order[b.impact] || 0) - (order[a.impact] || 0);
-    })
-    .slice(0, 10)
-    .map(r => ({
-      key: r.key,
-      name: r.name,
-      impact: r.impact,
-      category: r.category,
-      why: STRENGTH_REASONS[r.key] || `Already configured and working: ${r.name}.`,
-    }));
-}
-
-const GAP_REASONS = {
-  noBypassPermissions: 'bypassPermissions skips all safety checks. Use explicit allow rules for control without risk.',
-  secretsProtection: 'Without deny rules for .env, Claude can read secrets and potentially expose them in outputs.',
-  testCommand: 'Without a test command, Claude cannot verify its changes work before you review them.',
-  lintCommand: 'Without a lint command, Claude may produce inconsistently formatted code.',
-  buildCommand: 'Without a build command, Claude cannot catch compilation errors early.',
-  ciPipeline: 'CI ensures every change is automatically tested. Without it, bugs reach main branch faster.',
-  securityReview: 'Claude Code has built-in OWASP Top 10 scanning. Not using it leaves vulnerabilities undetected.',
-  skills: 'Skills encode domain expertise as reusable components. Without them, you repeat context every session.',
-  multipleAgents: 'Multiple agents enable parallel specialized work (security review + code writing simultaneously).',
-  multipleMcpServers: 'More MCP servers give Claude access to more external context (docs, databases, APIs).',
-  roleDefinition: 'A role definition helps Claude calibrate response depth and technical level.',
-  importSyntax: '@import keeps CLAUDE.md lean while still providing deep instructions in focused modules.',
-};
-
-function toGaps(results) {
-  return results
-    .filter(r => r.passed === false)
-    .sort((a, b) => {
-      const order = { critical: 3, high: 2, medium: 1, low: 0 };
-      return (order[b.impact] || 0) - (order[a.impact] || 0);
-    })
-    .slice(0, 8)
-    .map(r => ({
-      key: r.key,
-      name: r.name,
-      impact: r.impact,
-      category: r.category,
-      fix: r.fix,
-      why: GAP_REASONS[r.key] || r.fix,
-    }));
-}
-
-function toRecommendations(auditResult) {
-  const failed = auditResult.results.filter(r => r.passed === false);
-  const topActionOrder = new Map((auditResult.topNextActions || []).map((item, index) => [item.key, index]));
-  failed.sort((a, b) => {
-    const rankedA = topActionOrder.has(a.key) ? topActionOrder.get(a.key) : Number.MAX_SAFE_INTEGER;
-    const rankedB = topActionOrder.has(b.key) ? topActionOrder.get(b.key) : Number.MAX_SAFE_INTEGER;
-    if (rankedA !== rankedB) return rankedA - rankedB;
-    const order = { critical: 3, high: 2, medium: 1, low: 0 };
-    return (order[b.impact] || 0) - (order[a.impact] || 0);
-  });
-
-  return failed.slice(0, 10).map((r, index) => ({
-    priority: index + 1,
-    key: r.key,
-    name: r.name,
-    impact: r.impact,
-    module: moduleFromCategory(r.category),
-    risk: riskFromImpact(r.impact),
-    why: r.fix,
-    evidenceClass: (auditResult.topNextActions || []).find(item => item.key === r.key)?.evidenceClass || 'estimated',
-    rankingAdjustment: (auditResult.topNextActions || []).find(item => item.key === r.key)?.rankingAdjustment || 0,
-  }));
-}
-
-function buildOptionalModules(platform, stacks, assets, recommendedDomainPacks = []) {
-  if (platform === 'codex') {
-    const modules = [];
-
-    if (!assets.instructionPath) modules.push('AGENTS.md baseline');
-    if (!assets.configPath) modules.push('Codex config baseline');
-    if (assets.counts.rules === 0) modules.push('Codex rules baseline');
-    if (assets.counts.hooks === 0) modules.push('Hooks scaffold');
-    if (assets.counts.skills === 0) modules.push('Repo-local skills starter');
-    if (assets.counts.agents === 0) modules.push('Subagents starter');
-    if (assets.counts.mcpServers === 0) modules.push('MCP baseline');
-    if (assets.counts.workflows === 0) modules.push('CI / review workflow starter');
-    for (const pack of recommendedDomainPacks) {
-      for (const moduleName of pack.recommendedModules || []) {
-        modules.push(moduleName);
-      }
-    }
-
-    return [...new Set(modules)].slice(0, 8);
-  }
-
-  const stackKeys = stacks.map(s => s.key);
-  const modules = [];
-
-  if (!assets.files.claudeMd) modules.push('CLAUDE.md baseline');
-  if (assets.counts.commands === 0) modules.push('Slash commands');
-  if (assets.counts.hooks === 0) modules.push('Hooks automation');
-  if (!assets.permissions || !assets.permissions.hasDenyRules) modules.push('Permission safety profile');
-  if (assets.counts.rules === 0) modules.push('Path-specific rules');
-  if (stackKeys.some(k => ['react', 'nextjs', 'vue', 'angular', 'svelte'].includes(k))) modules.push('Frontend pack');
-  if (stackKeys.some(k => ['node', 'python', 'django', 'fastapi', 'go', 'rust', 'java'].includes(k))) modules.push('Backend pack');
-  if (stackKeys.some(k => ['docker', 'terraform', 'kubernetes'].includes(k))) modules.push('DevOps pack');
-  if (assets.counts.agents === 0) modules.push('Specialized agents');
-
-  return [...new Set(modules)].slice(0, 8);
-}
-
-function buildRiskNotes(platform, auditResult, assets, maturity) {
-  if (platform === 'codex') {
-    const notes = [];
-    if (!assets.instructionPath) notes.push('No AGENTS.md exists yet, so Codex starts without repo-specific instructions.');
-    if (!assets.configPath) notes.push('No .codex/config.toml exists yet, so approval, sandbox, and history posture are implicit.');
-    if (assets.trust && assets.trust.approvalPolicy === 'never') {
-      notes.push('approval_policy is set to `never`; make sure that autonomy level is truly intended for this repo.');
-    }
-    if (assets.trust && assets.trust.sandboxMode === 'danger-full-access') {
-      notes.push('sandbox_mode is `danger-full-access`, which removes Codex runtime guardrails and should stay exceptional.');
-    }
-    if (assets.counts.mcpServers > 0 && assets.trust && !assets.trust.isTrustedProject) {
-      notes.push('This repo appears to rely on project-scoped MCP, but the project trust path is not clearly established.');
-    }
-    if (maturity === 'mature') {
-      notes.push('This repo already has meaningful Codex assets, so advisory mode should preserve and extend them instead of flattening them.');
-    }
-    for (const caveat of auditResult.platformCaveats || []) {
-      if (caveat && caveat.message) {
-        notes.push(caveat.message);
-      }
-    }
-    return [...new Set(notes)].slice(0, 5);
-  }
-
-  const notes = [];
-  if (!assets.files.claudeMd) notes.push('No CLAUDE.md exists yet, so Claude has no persistent project-specific guidance.');
-  if (assets.permissions && assets.permissions.defaultMode === 'bypassPermissions') {
-    notes.push('Current settings use bypassPermissions, which is risky for broader team adoption.');
-  }
-  if (!assets.permissions || !assets.permissions.hasDenyRules) {
-    notes.push('Permissions lack deny rules, so secret access and destructive commands are not strongly guarded.');
-  }
-  if (maturity === 'mature') {
-    notes.push('This repo already has meaningful Claude assets, so augment mode should preserve existing structure instead of overwriting it.');
-  }
-  if (auditResult.results.some(r => r.key === 'ciPipeline' && r.passed === false)) {
-    notes.push('Without CI enforcement, readiness can drift after setup.');
-  }
-  return notes.slice(0, 5);
-}
-
-function buildRolloutOrder(report) {
-  if (report.platform === 'codex') {
-    const steps = [];
-    if (!report.existingPlatformAssets.instructionPath) steps.push('Create a project-specific AGENTS.md baseline');
-    if (!report.existingPlatformAssets.configPath) steps.push('Create a safe `.codex/config.toml` baseline with explicit trust settings');
-    if (report.recommendedDomainPacks.length > 0) {
-      steps.push(`Start from the ${report.recommendedDomainPacks.map((pack) => pack.label).join(' + ')} pack guidance before adding optional Codex surfaces`);
-    }
-    if (report.gapsIdentified.some(g => g.category === 'trust' || g.category === 'config')) steps.push('Make approval, sandbox, history, and network posture explicit');
-    if (report.gapsIdentified.some(g => g.category === 'rules')) steps.push('Add Codex rules for risky command classes before expanding automation');
-    if (report.gapsIdentified.some(g => g.category === 'mcp')) steps.push('Add MCP only where the repo really needs live external context and the trust boundary is clear');
-    if (report.gapsIdentified.some(g => g.category === 'skills' || g.category === 'agents')) steps.push('Add skills and subagents only after the baseline contract is stable');
-    if (report.gapsIdentified.some(g => g.category === 'review' || g.category === 'automation')) steps.push('Add review and CI automation after local verification is explicit');
-    return steps.length > 0 ? steps : ['Preserve the current Codex baseline and tighten remaining quality-deep items'];
-  }
-
-  const steps = [];
-  if (!report.existingClaudeAssets.claudeMd) steps.push('Create a project-specific CLAUDE.md baseline');
-  if (report.gapsIdentified.some(g => g.category === 'security')) steps.push('Add safe settings and deny rules');
-  if (report.gapsIdentified.some(g => g.category === 'automation')) steps.push('Add hooks and automate verification');
-  if (report.gapsIdentified.some(g => g.category === 'workflow')) steps.push('Add commands, rules, and specialization modules');
-  if (report.gapsIdentified.some(g => g.category === 'devops')) steps.push('Connect CI threshold enforcement');
-  if (steps.length === 0) steps.push('Tighten quality-deep items and preserve the current setup');
-  return steps;
-}
-
-/**
- * Analyze a project's Claude Code setup and produce a structured recommendation report.
- * @param {Object} options - Analysis options.
- * @param {string} options.dir - Project directory to analyze.
- * @param {string} [options.mode='augment'] - Analysis mode ('augment' or 'suggest-only').
- * @returns {Promise<Object>} Structured report with project summary, gaps, strengths, and recommendations.
- */
-async function analyzeProject(options) {
-  const mode = options.mode || 'augment';
-  const platform = options.platform === 'codex' ? 'codex' : 'claude';
-  const platformLabel = platform === 'codex' ? 'Codex' : 'Claude';
-  const ContextClass = platform === 'codex' ? CodexProjectContext : ProjectContext;
-  const ctx = new ContextClass(options.dir);
-  const stacks = ctx.detectStacks(STACKS);
-  const auditResult = await audit({ ...options, silent: true, platform });
-  const assets = platform === 'codex' ? collectCodexAssets(ctx) : collectClaudeAssets(ctx);
-  const metadata = detectProjectMetadata(ctx);
-  const maturity = detectMaturity(platform, assets);
-  const mainDirs = detectMainDirs(ctx);
-  const recommendedDomainPacks = platform === 'codex'
-    ? detectCodexDomainPacks(ctx, stacks, assets)
-    : detectDomainPacks(ctx, stacks, assets);
-  const recommendedMcpPacks = platform === 'claude' ? recommendMcpPacks(stacks, recommendedDomainPacks, { ctx, assets }) : [];
-  const repoArchetype = buildRepoArchetypeProfile({
-    ctx,
-    platform,
-    stacks,
-    assets,
-    recommendedDomainPacks,
-    recommendedMcpPacks,
-    maturity,
-  });
-  const recommendedOperatingProfile = buildOperatingProfile({
-    dir: options.dir,
-    platform,
-    repoArchetype,
-    recommendedDomainPacks,
-    recommendedMcpPacks,
-  });
-  const adoptionGuidance = buildAdoptionAdvisor({
-    platform,
-    repoArchetype,
-    recommendedOperatingProfile,
-    recommendedDomainPacks,
-    recommendedMcpPacks,
-    env: options.env || {},
-  });
-
-  const report = {
-    platform,
-    platformLabel,
-    mode,
-    writeBehavior: 'No files are written in this mode.',
-    projectSummary: {
-      name: metadata.name,
-      description: metadata.description,
-      directory: options.dir,
-      stacks: stacks.map(s => s.label),
-      domains: recommendedDomainPacks.map(pack => pack.label),
-      maturity,
-      archetype: repoArchetype.label,
-      workflow: repoArchetype.primaryWorkflow.label,
-      riskLevel: repoArchetype.riskProfile.label,
-      operatingProfile: recommendedOperatingProfile.label,
-      adoptionPlan: adoptionGuidance.summary.label,
-      score: auditResult.score,
-      organicScore: auditResult.organicScore,
-      checkCount: auditResult.checkCount,
-    },
-    platformScopeNote: auditResult.platformScopeNote || null,
-    platformCaveats: auditResult.platformCaveats || [],
-    repoArchetype,
-    recommendedOperatingProfile,
-    adoptionGuidance,
-    detectedArchitecture: {
-      repoType: stacks.length > 0 ? 'stack-detected repo' : 'generic repo',
-      mainDirectories: mainDirs,
-      stackSignals: stacks.map(s => s.key),
-      stackFamily: repoArchetype.stackFamily.label,
-      topology: repoArchetype.topology.label,
-      workflow: repoArchetype.primaryWorkflow.label,
-      riskLevel: repoArchetype.riskProfile.label,
-    },
-    existingPlatformAssets: assets,
-    strengthsPreserved: toStrengths(auditResult.results),
-    gapsIdentified: toGaps(auditResult.results),
-    topNextActions: auditResult.topNextActions || auditResult.quickWins,
-    recommendedImprovements: toRecommendations(auditResult),
-    recommendedDomainPacks,
-    recommendedMcpPacks,
-    riskNotes: buildRiskNotes(platform, auditResult, assets, maturity),
-    optionalModules: buildOptionalModules(platform, stacks, assets, recommendedDomainPacks),
-  };
-
-  if (platform === 'claude') {
-    report.existingClaudeAssets = {
-      claudeMd: assets.files.claudeMd,
-      settings: assets.settingsSource,
-      commands: assets.files.commands,
-      rules: assets.files.rules,
-      hooks: assets.files.hooks,
-      agents: assets.files.agents,
-      skills: assets.files.skills,
-      mcpServers: assets.counts.mcpServers,
-    };
-  } else {
-    report.existingCodexAssets = {
-      agentsMd: assets.instructionPath,
-      config: assets.configPath,
-      rules: assets.files.rules,
-      hooks: assets.files.hooks,
-      skills: assets.files.skills,
-      agents: assets.files.agents,
-      workflows: assets.files.workflows,
-      mcpServers: assets.counts.mcpServers,
-    };
-  }
-
-  report.suggestedRolloutOrder = buildRolloutOrder(report);
-  return report;
-}
-
-function printAnalysis(report, options = {}) {
-  if (options.json) {
-    console.log(JSON.stringify(report, null, 2));
-    return;
-  }
-
-  const modeLabel = report.mode === 'suggest-only' ? 'suggest-only' : report.mode;
-  console.log('');
-  console.log(c(`  nerviq ${report.platform === 'codex' ? 'codex ' : ''}${modeLabel}`, 'bold'));
-  console.log(c('  ═══════════════════════════════════════', 'dim'));
-  console.log(c(`  ${report.writeBehavior}`, 'dim'));
-  if (report.platformScopeNote) {
-    console.log(c(`  ${report.platformScopeNote.message}`, 'dim'));
-  }
-  console.log('');
-
-  console.log(c('  Project Summary', 'blue'));
-  console.log(`  ${report.projectSummary.name}${report.projectSummary.description ? ` — ${report.projectSummary.description}` : ''}`);
-  console.log(c(`  Stack: ${report.projectSummary.stacks.join(', ') || 'Unknown'}`, 'dim'));
-  if (report.platform === 'claude') {
-    console.log(c(`  Domain packs: ${report.projectSummary.domains.join(', ') || 'Baseline General'}`, 'dim'));
-  } else {
-    console.log(c(`  Platform: ${report.platformLabel}`, 'dim'));
-  }
-  console.log(c(`  Archetype: ${report.repoArchetype.label} | Workflow: ${report.repoArchetype.primaryWorkflow.label} | Risk: ${report.repoArchetype.riskProfile.label}`, 'dim'));
-  console.log(c(`  Maturity: ${report.projectSummary.maturity} | Score: ${report.projectSummary.score}/100 | Organic: ${report.projectSummary.organicScore}/100`, 'dim'));
-  console.log('');
-
-  console.log(c('  Detected Architecture', 'blue'));
-  console.log(c(`  Stack family: ${report.repoArchetype.stackFamily.label} | Topology: ${report.repoArchetype.topology.label} | Confidence: ${report.repoArchetype.confidence}`, 'dim'));
-  console.log(c(`  Main directories: ${report.detectedArchitecture.mainDirectories.join(', ') || 'No strong structure detected yet'}`, 'dim'));
-  console.log(c(`  Signals: ${report.repoArchetype.signals.join(' | ') || 'No strong archetype signals yet'}`, 'dim'));
-  console.log('');
-
-  console.log(c(`  Existing ${report.existingPlatformAssets.label} Assets`, 'blue'));
-  console.log(c(`  ${report.existingPlatformAssets.instructionLabel}: ${report.existingPlatformAssets.instructionPath || 'missing'}`, 'dim'));
-  console.log(c(`  ${report.existingPlatformAssets.configLabel}: ${report.existingPlatformAssets.configPath || 'missing'}`, 'dim'));
-  console.log(c(`  ${report.existingPlatformAssets.summaryLine}`, 'dim'));
-  if (report.platform === 'codex' && report.existingPlatformAssets.trust) {
-    const trustBits = [
-      `Approval: ${report.existingPlatformAssets.trust.approvalPolicy || 'implicit'}`,
-      `Sandbox: ${report.existingPlatformAssets.trust.sandboxMode || 'implicit'}`,
-      `Trusted path: ${report.existingPlatformAssets.trust.isTrustedProject ? 'yes' : 'no'}`,
-    ];
-    console.log(c(`  ${trustBits.join(' | ')}`, 'dim'));
-  }
-  console.log('');
-
-  if (report.strengthsPreserved.length > 0) {
-    console.log(c(`  ${'\u2705'} Strengths Preserved (don't change these)`, 'green'));
-    for (const item of report.strengthsPreserved) {
-      const impactLabel = item.impact ? ` (${item.impact})` : '';
-      console.log(`     ${c('\u2022', 'green')} ${item.name}${c(impactLabel, 'dim')}`);
-    }
-    console.log('');
-  }
-
-  if (report.gapsIdentified.length > 0) {
-    console.log(c('  Gaps Identified', 'yellow'));
-    for (const item of report.gapsIdentified.slice(0, 5)) {
-      console.log(`  - [${item.impact}] ${item.name}`);
-      console.log(c(`    ${item.fix}`, 'dim'));
-    }
-    console.log('');
-  }
-
-  if (report.topNextActions.length > 0) {
-    console.log(c('  Top 5 Next Actions', 'magenta'));
-    report.topNextActions.slice(0, 5).forEach((item, index) => {
-      console.log(`  ${index + 1}. ${item.name}`);
-      console.log(c(`     Why: ${item.why || item.fix}`, 'dim'));
-      if (Array.isArray(item.signals) && item.signals.length > 0) {
-        console.log(c(`     Trace: ${item.signals.join(' | ')}`, 'dim'));
-      }
-      if (item.risk || item.confidence) {
-        console.log(c(`     Risk: ${item.risk || 'low'} | Confidence: ${item.confidence || 'medium'}`, 'dim'));
-      }
-      if (item.fix && item.fix !== item.why) {
-        console.log(c(`     Fix: ${item.fix}`, 'dim'));
-      }
-    });
-    console.log('');
-  }
-
-  if (report.recommendedDomainPacks.length > 0) {
-    console.log(c('  Recommended Domain Packs', 'blue'));
-    for (const pack of report.recommendedDomainPacks) {
-      console.log(`  - ${pack.label}`);
-      console.log(c(`    ${pack.useWhen}`, 'dim'));
-    }
-    console.log('');
-  }
-
-  if (report.recommendedMcpPacks.length > 0) {
-    console.log(c('  Recommended MCP Packs', 'blue'));
-    for (const pack of report.recommendedMcpPacks) {
-      console.log(`  - ${pack.label}`);
-      console.log(c(`    ${pack.adoption}`, 'dim'));
-    }
-    console.log('');
-  }
-
-  if (report.platformCaveats && report.platformCaveats.length > 0) {
-    console.log(c('  Platform Caveats', 'yellow'));
-    for (const item of report.platformCaveats) {
-      console.log(`  - ${item.title}`);
-      console.log(c(`    ${item.message}`, 'dim'));
-    }
-    console.log('');
-  }
-
-  if (report.riskNotes.length > 0) {
-    console.log(c('  Risk Notes', 'red'));
-    for (const note of report.riskNotes) {
-      console.log(`  - ${note}`);
-    }
-    console.log('');
-  }
-
-  if (report.optionalModules.length > 0) {
-    console.log(c('  Optional Modules', 'blue'));
-    console.log(c(`  ${report.optionalModules.join(' | ')}`, 'dim'));
-    console.log('');
-  }
-
-  if (report.recommendedOperatingProfile) {
-    console.log(c('  Recommended Operating Profile', 'blue'));
-    console.log(`  ${report.recommendedOperatingProfile.label}`);
-    console.log(c(`  Permission: ${report.recommendedOperatingProfile.permissionProfile.label} | Governance pack: ${report.recommendedOperatingProfile.governancePack.label}`, 'dim'));
-    console.log(c(`  CI shape: ${report.recommendedOperatingProfile.ciShape.label} | Platforms: ${(report.recommendedOperatingProfile.platformSupport.recommended || []).join(', ') || report.platformLabel}`, 'dim'));
-    console.log(c(`  Hooks: ${report.recommendedOperatingProfile.hooks.map((hook) => hook.key).join(', ')}`, 'dim'));
-    console.log(c(`  Verification: ${report.recommendedOperatingProfile.verification.required.join(', ')}`, 'dim'));
-    console.log('');
-  }
-
-  if (report.adoptionGuidance && Array.isArray(report.adoptionGuidance.items) && report.adoptionGuidance.items.length > 0) {
-    console.log(c('  Adopt / Defer / Ignore', 'blue'));
-    console.log(c(`  ${report.adoptionGuidance.summary.label}`, 'dim'));
-    const groups = [
-      ['adopt', 'Adopt now'],
-      ['defer', 'Defer until prerequisites are ready'],
-      ['ignore', 'Ignore for this repo shape'],
-    ];
-    for (const [decision, label] of groups) {
-      const items = report.adoptionGuidance.items.filter((item) => item.decision === decision).slice(0, 3);
-      if (items.length === 0) continue;
-      console.log(`  ${label}`);
-      for (const item of items) {
-        console.log(`    - ${item.label}`);
-        console.log(c(`      ${item.why}`, 'dim'));
-      }
-    }
-    console.log('');
-  }
-
-  if (report.suggestedRolloutOrder.length > 0) {
-    console.log(c('  Suggested Rollout Order', 'blue'));
-    report.suggestedRolloutOrder.forEach((item, index) => {
-      console.log(`  ${index + 1}. ${item}`);
-    });
-    console.log('');
-  }
-}
-
-/**
- * Export an analysis report as a formatted markdown string.
- * @param {Object} report - The report object returned by analyzeProject().
- * @returns {string} Markdown-formatted report content.
- */
-function exportMarkdown(report) {
-  const lines = [];
-  lines.push(`# Nerviq Analysis Report`);
-  lines.push(`## ${report.platformLabel} ${report.mode === 'suggest-only' ? 'Suggest-Only' : 'Augment'} Mode`);
-  lines.push('');
-  lines.push(`**Project:** ${report.projectSummary.name}${report.projectSummary.description ? ` — ${report.projectSummary.description}` : ''}`);
-  lines.push(`**Date:** ${new Date().toISOString().split('T')[0]}`);
-  lines.push(`**Platform:** ${report.platformLabel}`);
-  lines.push(`**Score:** ${report.projectSummary.score}/100 | **Organic:** ${report.projectSummary.organicScore}/100`);
-  lines.push(`**Stacks:** ${report.projectSummary.stacks.join(', ') || 'None detected'}`);
-  if (report.platform === 'claude') {
-    lines.push(`**Domain Packs:** ${report.projectSummary.domains.join(', ') || 'Baseline General'}`);
-  }
-  lines.push(`**Archetype:** ${report.repoArchetype.label}`);
-  lines.push(`**Workflow:** ${report.repoArchetype.primaryWorkflow.label}`);
-  lines.push(`**Risk posture:** ${report.repoArchetype.riskProfile.label}`);
-  lines.push(`**Operating profile:** ${report.recommendedOperatingProfile.label}`);
-  lines.push(`**Adoption plan:** ${report.adoptionGuidance.summary.label}`);
-  lines.push(`**Maturity:** ${report.projectSummary.maturity}`);
-  lines.push('');
-
-  if (report.platformScopeNote) {
-    lines.push(`> ${report.platformScopeNote.message}`);
-    lines.push('');
-  }
-
-  lines.push(`## Existing ${report.existingPlatformAssets.label} Assets`);
-  lines.push('');
-  lines.push(`- **${report.existingPlatformAssets.instructionLabel}:** ${report.existingPlatformAssets.instructionPath || 'missing'}`);
-  lines.push(`- **${report.existingPlatformAssets.configLabel}:** ${report.existingPlatformAssets.configPath || 'missing'}`);
-  lines.push(`- **Summary:** ${report.existingPlatformAssets.summaryLine}`);
-  if (report.platform === 'codex' && report.existingPlatformAssets.trust) {
-    lines.push(`- **Approval policy:** ${report.existingPlatformAssets.trust.approvalPolicy || 'implicit'}`);
-    lines.push(`- **Sandbox mode:** ${report.existingPlatformAssets.trust.sandboxMode || 'implicit'}`);
-    lines.push(`- **Trusted project path:** ${report.existingPlatformAssets.trust.isTrustedProject ? 'yes' : 'no'}`);
-  }
-  lines.push('');
-
-  lines.push('## Repo Archetype');
-  lines.push('');
-  lines.push(`- **Label:** ${report.repoArchetype.label}`);
-  lines.push(`- **Summary:** ${report.repoArchetype.summary}`);
-  lines.push(`- **Stack family:** ${report.repoArchetype.stackFamily.label}`);
-  lines.push(`- **Topology:** ${report.repoArchetype.topology.label}`);
-  lines.push(`- **Primary workflow:** ${report.repoArchetype.primaryWorkflow.label}`);
-  lines.push(`- **Risk posture:** ${report.repoArchetype.riskProfile.label}`);
-  lines.push(`- **Confidence:** ${report.repoArchetype.confidence}`);
-  if (report.repoArchetype.signals.length > 0) {
-    lines.push(`- **Signals:** ${report.repoArchetype.signals.join(', ')}`);
-  }
-  lines.push('');
-
-  lines.push('## Recommended Operating Profile');
-  lines.push('');
-  lines.push(`- **Label:** ${report.recommendedOperatingProfile.label}`);
-  lines.push(`- **Summary:** ${report.recommendedOperatingProfile.summary}`);
-  lines.push(`- **Permission profile:** ${report.recommendedOperatingProfile.permissionProfile.label}`);
-  lines.push(`- **Governance pack:** ${report.recommendedOperatingProfile.governancePack.label}`);
-  lines.push(`- **Platform support:** ${(report.recommendedOperatingProfile.platformSupport.recommended || []).join(', ') || report.platformLabel}`);
-  if (report.recommendedOperatingProfile.platformSupport.optionalExpansion) {
-    lines.push(`- **Optional expansion:** ${report.recommendedOperatingProfile.platformSupport.optionalExpansion}`);
-  }
-  lines.push(`- **CI shape:** ${report.recommendedOperatingProfile.ciShape.label}`);
-  lines.push(`- **Verification:** ${report.recommendedOperatingProfile.verification.required.join(', ')}`);
-  lines.push(`- **Hooks:** ${report.recommendedOperatingProfile.hooks.map((hook) => hook.key).join(', ')}`);
-  lines.push('');
-
-  lines.push('## Adopt / Defer / Ignore');
-  lines.push('');
-  const decisionGroups = [
-    ['adopt', 'Adopt now'],
-    ['defer', 'Defer'],
-    ['ignore', 'Ignore'],
-  ];
-  for (const [decision, label] of decisionGroups) {
-    const items = report.adoptionGuidance.items.filter((item) => item.decision === decision);
-    if (items.length === 0) continue;
-    lines.push(`### ${label}`);
-    lines.push('');
-    for (const item of items) {
-      lines.push(`- **${item.label}** — ${item.why}`);
-      lines.push(`  Evidence: ${item.evidence.join(' | ')}`);
-      lines.push(`  Prerequisites: ${item.prerequisites.length > 0 ? item.prerequisites.join(' | ') : 'None'}`);
-      lines.push(`  Expected benefit: ${item.expectedBenefit}`);
-      lines.push(`  Rollback safety: ${item.rollbackSafety}`);
-    }
-    lines.push('');
-  }
-
-  if (report.strengthsPreserved.length > 0) {
-    lines.push('## Strengths Preserved (don\'t change these)');
-    lines.push('');
-    for (const item of report.strengthsPreserved) {
-      const impactLabel = item.impact ? ` (${item.impact})` : '';
-      lines.push(`- **${item.name}**${impactLabel} — ${item.why || 'Already configured.'}`);
-    }
-    lines.push('');
-  }
-
-  if (report.gapsIdentified.length > 0) {
-    lines.push('## Gaps Identified');
-    lines.push('');
-    lines.push('| Gap | Impact | Fix |');
-    lines.push('|-----|--------|-----|');
-    for (const item of report.gapsIdentified) {
-      lines.push(`| ${item.name} | ${item.impact} | ${item.fix} |`);
-    }
-    lines.push('');
-  }
-
-  if (report.topNextActions.length > 0) {
-    lines.push('## Top Next Actions');
-    lines.push('');
-    report.topNextActions.slice(0, 5).forEach((item, index) => {
-      lines.push(`${index + 1}. **${item.name}**`);
-      lines.push(`   - Why: ${item.why || item.fix}`);
-      if (Array.isArray(item.signals) && item.signals.length > 0) {
-        lines.push(`   - Trace: ${item.signals.join(' | ')}`);
-      }
-      if (item.risk || item.confidence) {
-        lines.push(`   - Risk / Confidence: ${item.risk || 'low'} / ${item.confidence || 'medium'}`);
-      }
-      if (item.fix && item.fix !== item.why) {
-        lines.push(`   - Fix: ${item.fix}`);
-      }
-    });
-    lines.push('');
-  }
-
-  if (report.recommendedDomainPacks.length > 0) {
-    lines.push('## Recommended Domain Packs');
-    lines.push('');
-    for (const pack of report.recommendedDomainPacks) {
-      lines.push(`- **${pack.label}**: ${pack.useWhen}`);
-    }
-    lines.push('');
-  }
-
-  if (report.recommendedMcpPacks.length > 0) {
-    lines.push('## Recommended MCP Packs');
-    lines.push('');
-    for (const pack of report.recommendedMcpPacks) {
-      lines.push(`- **${pack.label}**: ${pack.useWhen}`);
-    }
-    lines.push('');
-  }
-
-  if (report.platformCaveats && report.platformCaveats.length > 0) {
-    lines.push('## Platform Caveats');
-    lines.push('');
-    for (const item of report.platformCaveats) {
-      lines.push(`- **${item.title}**: ${item.message}`);
-    }
-    lines.push('');
-  }
-
-  if (report.riskNotes.length > 0) {
-    lines.push('## Risk Notes');
-    lines.push('');
-    for (const note of report.riskNotes) {
-      lines.push(`- ⚠️ ${note}`);
-    }
-    lines.push('');
-  }
-
-  if (report.suggestedRolloutOrder.length > 0) {
-    lines.push('## Suggested Rollout Order');
-    lines.push('');
-    report.suggestedRolloutOrder.forEach((item, index) => {
-      lines.push(`${index + 1}. ${item}`);
-    });
-    lines.push('');
-  }
-
-  lines.push('---');
-  lines.push(`*Generated by nerviq v${require('../package.json').version}*`);
-  return lines.join('\n');
-}
-
-module.exports = { analyzeProject, printAnalysis, exportMarkdown };
+/**
+ * Project scanner + recommendation layer for augment and suggest-only modes.
+ * Produces a structured repo-aware analysis without writing files.
+ */
+
+const path = require('path');
+const { audit } = require('./audit');
+const { ProjectContext } = require('./context');
+const { CodexProjectContext } = require('./codex/context');
+const { STACKS } = require('./techniques');
+const { detectDomainPacks } = require('./domain-packs');
+const { detectCodexDomainPacks } = require('./codex/domain-packs');
+const { recommendMcpPacks } = require('./mcp-packs');
+const { collectClaudeDenyRules } = require('./permission-rules');
+const { buildRepoArchetypeProfile } = require('./repo-archetype');
+const { buildOperatingProfile } = require('./operating-profile');
+const { buildAdoptionAdvisor } = require('./adoption-advisor');
+
+const COLORS = {
+  reset: '\x1b[0m',
+  bold: '\x1b[1m',
+  dim: '\x1b[2m',
+  red: '\x1b[31m',
+  green: '\x1b[32m',
+  yellow: '\x1b[33m',
+  blue: '\x1b[36m',
+  magenta: '\x1b[35m',
+};
+
+function c(text, color) {
+  return `${COLORS[color] || ''}${text}${COLORS.reset}`;
+}
+
+function escapeRegex(value) {
+  return value.replace(/[.*+?^${}()|[\]\\]/g, '\\$&');
+}
+
+function extractTomlSection(content, sectionName) {
+  const pattern = new RegExp(`\\[${escapeRegex(sectionName)}\\]([\\s\\S]*?)(?:\\n\\s*\\[|$)`);
+  const match = content.match(pattern);
+  return match ? match[1] : null;
+}
+
+function extractTomlValue(sectionContent, key) {
+  if (!sectionContent) return null;
+  const pattern = new RegExp(`^\\s*${escapeRegex(key)}\\s*=\\s*["']([^"']+)["']`, 'm');
+  const match = sectionContent.match(pattern);
+  return match ? match[1].trim() : null;
+}
+
+function detectProjectMetadata(ctx) {
+  const pkg = ctx.jsonFile('package.json');
+  if (pkg && (pkg.name || pkg.description)) {
+    return {
+      name: pkg.name || path.basename(ctx.dir),
+      description: pkg.description || '',
+    };
+  }
+
+  const pyproject = ctx.fileContent('pyproject.toml') || '';
+  if (pyproject) {
+    const projectSection = extractTomlSection(pyproject, 'project');
+    const poetrySection = extractTomlSection(pyproject, 'tool.poetry');
+    const name = extractTomlValue(projectSection, 'name') ||
+      extractTomlValue(poetrySection, 'name');
+    const description = extractTomlValue(projectSection, 'description') ||
+      extractTomlValue(poetrySection, 'description');
+
+    if (name || description) {
+      return {
+        name: name || path.basename(ctx.dir),
+        description: description || '',
+      };
+    }
+  }
+
+  return {
+    name: path.basename(ctx.dir),
+    description: '',
+  };
+}
+
+function detectMainDirs(ctx) {
+  const candidates = [
+    'src', 'lib', 'app', 'pages', 'components', 'api', 'routes', 'utils', 'helpers',
+    'services', 'models', 'controllers', 'views', 'public', 'assets', 'config', 'tests',
+    'test', '__tests__', 'spec', 'scripts', 'prisma', 'db', 'middleware', 'hooks',
+    'agents', 'chains', 'workers', 'jobs', 'dags', 'macros', 'migrations',
+    'src/components', 'src/app', 'src/pages', 'src/api', 'src/lib', 'src/hooks',
+    'src/utils', 'src/services', 'src/models', 'src/middleware', 'src/agents',
+    'src/chains', 'src/workers', 'src/jobs', 'src/app/api', 'app/api',
+    'models/staging', 'models/marts'
+  ];
+
+  const dirs = [];
+  for (const dir of candidates) {
+    if (ctx.hasDir(dir)) {
+      dirs.push(dir);
+    }
+  }
+  return dirs;
+}
+
+function collectClaudeAssets(ctx) {
+  const sharedSettings = ctx.jsonFile('.claude/settings.json');
+  const localSettings = ctx.jsonFile('.claude/settings.local.json');
+  const settings = sharedSettings || localSettings || null;
+  const denyRules = collectClaudeDenyRules(ctx);
+
+  const assetFiles = {
+    claudeMd: ctx.fileContent('CLAUDE.md') ? 'CLAUDE.md' : (ctx.fileContent('.claude/CLAUDE.md') ? '.claude/CLAUDE.md' : null),
+    settings: sharedSettings ? '.claude/settings.json' : (localSettings ? '.claude/settings.local.json' : null),
+    commands: ctx.hasDir('.claude/commands') ? ctx.dirFiles('.claude/commands') : [],
+    rules: ctx.hasDir('.claude/rules') ? ctx.dirFiles('.claude/rules') : [],
+    hooks: ctx.hasDir('.claude/hooks') ? ctx.dirFiles('.claude/hooks') : [],
+    agents: ctx.hasDir('.claude/agents') ? ctx.dirFiles('.claude/agents') : [],
+    skills: ctx.hasDir('.claude/skills') ? ctx.dirFiles('.claude/skills') : [],
+  };
+
+  return {
+    label: 'Claude',
+    instructionLabel: 'CLAUDE.md',
+    configLabel: 'Settings',
+    instructionPath: assetFiles.claudeMd,
+    configPath: assetFiles.settings,
+    files: assetFiles,
+    counts: {
+      commands: assetFiles.commands.length,
+      rules: assetFiles.rules.length,
+      hooks: assetFiles.hooks.length,
+      agents: assetFiles.agents.length,
+      skills: assetFiles.skills.length,
+      mcpServers: settings && settings.mcpServers ? Object.keys(settings.mcpServers).length : 0,
+    },
+    permissions: settings && settings.permissions ? {
+      defaultMode: settings.permissions.defaultMode || null,
+      hasDenyRules: denyRules.length > 0,
+    } : null,
+    settingsSource: assetFiles.settings,
+    summaryLine: `Commands: ${assetFiles.commands.length} | Rules: ${assetFiles.rules.length} | Hooks: ${assetFiles.hooks.length} | Agents: ${assetFiles.agents.length} | Skills: ${assetFiles.skills.length} | MCP servers: ${settings && settings.mcpServers ? Object.keys(settings.mcpServers).length : 0}`,
+  };
+}
+
+function collectCodexAssets(ctx) {
+  const agentsMd = ctx.agentsMdPath ? ctx.agentsMdPath() : null;
+  const configPath = ctx.fileContent('.codex/config.toml') ? '.codex/config.toml' : null;
+  const hooksJson = ctx.hooksJsonContent ? ctx.hooksJsonContent() : null;
+  const rules = ctx.ruleFiles ? ctx.ruleFiles() : [];
+  const skills = ctx.skillDirs ? ctx.skillDirs().map((name) => `.agents/skills/${name}`) : [];
+  const agents = ctx.customAgentFiles ? ctx.customAgentFiles().map((file) => `.codex/agents/${file}`) : [];
+  const workflows = ctx.workflowFiles ? ctx.workflowFiles() : [];
+  const mcpServers = ctx.mcpServers ? Object.keys(ctx.mcpServers() || {}).length : 0;
+
+  return {
+    label: 'Codex',
+    instructionLabel: 'AGENTS.md',
+    configLabel: 'Config',
+    instructionPath: agentsMd,
+    configPath,
+    files: {
+      agentsMd,
+      config: configPath,
+      rules,
+      hooks: hooksJson ? ['.codex/hooks.json'] : [],
+      skills,
+      agents,
+      workflows,
+    },
+    counts: {
+      rules: rules.length,
+      hooks: hooksJson ? 1 : 0,
+      skills: skills.length,
+      agents: agents.length,
+      workflows: workflows.length,
+      mcpServers,
+    },
+    trust: {
+      approvalPolicy: ctx.configValue ? (ctx.configValue('approval_policy') || null) : null,
+      sandboxMode: ctx.configValue ? (ctx.configValue('sandbox_mode') || null) : null,
+      isTrustedProject: ctx.isProjectTrusted ? ctx.isProjectTrusted() : false,
+    },
+    summaryLine: `Rules: ${rules.length} | Hooks: ${hooksJson ? 1 : 0} | Skills: ${skills.length} | Subagents: ${agents.length} | Workflows: ${workflows.length} | MCP servers: ${mcpServers}`,
+  };
+}
+
+function detectMaturity(platform, assets) {
+  if (platform === 'codex') {
+    let score = 0;
+    if (assets.instructionPath) score += 2;
+    if (assets.configPath) score += 2;
+    if (assets.counts.rules > 0) score += 1;
+    if (assets.counts.hooks > 0) score += 1;
+    if (assets.counts.skills > 0) score += 1;
+    if (assets.counts.agents > 0) score += 1;
+    if (assets.counts.workflows > 0) score += 1;
+    if (assets.counts.mcpServers > 0) score += 1;
+
+    if (score === 0) return 'none';
+    if (score <= 2) return 'starter';
+    if (score <= 5) return 'developing';
+    return 'mature';
+  }
+
+  let score = 0;
+  if (assets.files.claudeMd) score += 2;
+  if (assets.files.settings) score += 1;
+  if (assets.counts.rules > 0) score += 1;
+  if (assets.counts.commands > 0) score += 1;
+  if (assets.counts.hooks > 0) score += 1;
+  if (assets.counts.agents > 0) score += 1;
+  if (assets.counts.skills > 0) score += 1;
+
+  if (score === 0) return 'none';
+  if (score <= 2) return 'starter';
+  if (score <= 5) return 'developing';
+  return 'mature';
+}
+
+function riskFromImpact(impact) {
+  if (impact === 'critical') return 'high';
+  if (impact === 'high') return 'medium';
+  return 'low';
+}
+
+function moduleFromCategory(category) {
+  const map = {
+    memory: 'CLAUDE.md',
+    instructions: 'AGENTS.md / instructions',
+    config: 'config.toml',
+    trust: 'trust-and-safety',
+    rules: 'rules',
+    hooks: 'hooks',
+    mcp: 'mcp',
+    skills: 'skills',
+    agents: 'subagents',
+    review: 'review',
+    automation: 'automation',
+    local: 'local-environments',
+    quality: 'verification',
+    git: 'safety',
+    workflow: 'commands-agents-skills',
+    security: 'permissions',
+    automation: 'hooks',
+    design: 'design-rules',
+    devops: 'ci-devops',
+    hygiene: 'project-hygiene',
+    performance: 'context-management',
+    tools: 'mcp-tools',
+    prompting: 'prompt-structure',
+    features: 'modern-claude-features',
+    'quality-deep': 'quality-deep',
+  };
+  return map[category] || category;
+}
+
+const STRENGTH_REASONS = {
+  claudeMd: 'Foundation of Claude workflow. Every session benefits from this.',
+  mermaidArchitecture: 'Architecture diagram saves 73% tokens vs prose — high-value asset.',
+  verificationLoop: 'Claude can self-verify, catching errors before human review.',
+  hooks: 'Automated enforcement (100% vs 80% from instructions alone).',
+  hooksInSettings: 'Hook registration in settings ensures consistent automation.',
+  preToolUseHook: 'Pre-execution validation adds a safety layer.',
+  postToolUseHook: 'Post-execution automation catches issues immediately.',
+  sessionStartHook: 'Session initialization ensures consistent starting state.',
+  customCommands: 'Reusable workflows encoded as one-liner commands.',
+  settingsPermissions: 'Explicit permissions prevent accidental dangerous operations.',
+  permissionDeny: 'Deny rules block risky operations at the system level.',
+  pathRules: 'Scoped rules ensure different code areas get appropriate guidance.',
+  fewShotExamples: 'Code examples guide Claude to match your conventions.',
+  constraintBlocks: 'XML constraint blocks improve rule adherence by 40%.',
+  xmlTags: 'Structured prompt sections improve consistency.',
+  context7Mcp: 'Real-time docs eliminate version-mismatch hallucinations.',
+  mcpServers: 'External tool integration extends Claude capabilities.',
+  compactionAwareness: 'Context management keeps sessions efficient.',
+  agents: 'Specialized agents delegate complex tasks effectively.',
+  noSecretsInClaude: 'No secrets in config — good security hygiene.',
+  gitIgnoreEnv: 'Environment files are properly excluded from git.',
+  codexAgentsMd: 'Codex has a repo-native instruction surface instead of starting cold.',
+  codexAgentsMdSubstantive: 'A substantive AGENTS.md reduces drift and gives Codex a stable repo contract.',
+  codexAgentsVerificationCommands: 'Codex can verify its changes because the repo states how to test and build.',
+  codexAgentsArchitecture: 'Codex has a repo map to orient itself before editing.',
+  codexConfigExists: 'Codex runtime posture is reviewable because the project config is versioned.',
+  codexModelExplicit: 'The primary Codex model is explicit instead of silently inheriting defaults.',
+  codexReasoningEffortExplicit: 'Reasoning depth is explicit and reviewable.',
+  codexWeakTaskModelExplicit: 'Delegation for weaker tasks is explicit and cost-aware.',
+  codexApprovalPolicyExplicit: 'Approval behavior is explicit, predictable, and reviewable.',
+  codexSandboxExplicit: 'Sandbox posture is explicit instead of accidental.',
+  codexHistorySendToServerExplicit: 'History sync posture is reviewable in version control.',
+  codexRulesForRiskyCommands: 'Risky command classes are governed by Codex-native rules.',
+  codexHooksFeatureExplicit: 'Hook posture is explicit instead of implied.',
+  codexMcpExternalToolsConfigured: 'Codex has live MCP context instead of relying only on static repo files.',
+  codexSkillsDirPresentWhenUsed: 'Repo-local skills keep specialization versioned and reviewable.',
+  codexSkillsHaveMetadata: 'Skill metadata is explicit enough for reliable invocation.',
+  codexCustomAgentsRequiredFields: 'Custom subagents are structured and reviewable.',
+  codexExecUsageSafe: 'Codex automation posture is documented and safer to operate.',
+  codexGitHubActionSafeStrategy: 'CI posture is explicit and safer for Codex in automation.',
+  codexReviewWorkflowDocumented: 'A documented review path makes risky Codex changes easier to control.',
+  codexArtifactsSharedIntentionally: 'Codex repo artifacts are shared intentionally instead of being hidden from the team.',
+  codexAgentsMentionModernFeatures: 'AGENTS.md acknowledges the modern Codex surfaces the repo actually uses.',
+};
+
+function toStrengths(results) {
+  return results
+    .filter(r => r.passed === true && (r.impact === 'critical' || r.impact === 'high' || r.impact === 'medium'))
+    .sort((a, b) => {
+      const order = { critical: 3, high: 2, medium: 1, low: 0 };
+      return (order[b.impact] || 0) - (order[a.impact] || 0);
+    })
+    .slice(0, 10)
+    .map(r => ({
+      key: r.key,
+      name: r.name,
+      impact: r.impact,
+      category: r.category,
+      why: STRENGTH_REASONS[r.key] || `Already configured and working: ${r.name}.`,
+    }));
+}
+
+const GAP_REASONS = {
+  noBypassPermissions: 'bypassPermissions skips all safety checks. Use explicit allow rules for control without risk.',
+  secretsProtection: 'Without deny rules for .env, Claude can read secrets and potentially expose them in outputs.',
+  testCommand: 'Without a test command, Claude cannot verify its changes work before you review them.',
+  lintCommand: 'Without a lint command, Claude may produce inconsistently formatted code.',
+  buildCommand: 'Without a build command, Claude cannot catch compilation errors early.',
+  ciPipeline: 'CI ensures every change is automatically tested. Without it, bugs reach main branch faster.',
+  securityReview: 'Claude Code has built-in OWASP Top 10 scanning. Not using it leaves vulnerabilities undetected.',
+  skills: 'Skills encode domain expertise as reusable components. Without them, you repeat context every session.',
+  multipleAgents: 'Multiple agents enable parallel specialized work (security review + code writing simultaneously).',
+  multipleMcpServers: 'More MCP servers give Claude access to more external context (docs, databases, APIs).',
+  roleDefinition: 'A role definition helps Claude calibrate response depth and technical level.',
+  importSyntax: '@import keeps CLAUDE.md lean while still providing deep instructions in focused modules.',
+};
+
+function toGaps(results) {
+  return results
+    .filter(r => r.passed === false)
+    .sort((a, b) => {
+      const order = { critical: 3, high: 2, medium: 1, low: 0 };
+      return (order[b.impact] || 0) - (order[a.impact] || 0);
+    })
+    .slice(0, 8)
+    .map(r => ({
+      key: r.key,
+      name: r.name,
+      impact: r.impact,
+      category: r.category,
+      fix: r.fix,
+      why: GAP_REASONS[r.key] || r.fix,
+    }));
+}
+
+function toRecommendations(auditResult) {
+  const failed = auditResult.results.filter(r => r.passed === false);
+  const topActionOrder = new Map((auditResult.topNextActions || []).map((item, index) => [item.key, index]));
+  failed.sort((a, b) => {
+    const rankedA = topActionOrder.has(a.key) ? topActionOrder.get(a.key) : Number.MAX_SAFE_INTEGER;
+    const rankedB = topActionOrder.has(b.key) ? topActionOrder.get(b.key) : Number.MAX_SAFE_INTEGER;
+    if (rankedA !== rankedB) return rankedA - rankedB;
+    const order = { critical: 3, high: 2, medium: 1, low: 0 };
+    return (order[b.impact] || 0) - (order[a.impact] || 0);
+  });
+
+  return failed.slice(0, 10).map((r, index) => ({
+    priority: index + 1,
+    key: r.key,
+    name: r.name,
+    impact: r.impact,
+    module: moduleFromCategory(r.category),
+    risk: riskFromImpact(r.impact),
+    why: r.fix,
+    evidenceClass: (auditResult.topNextActions || []).find(item => item.key === r.key)?.evidenceClass || 'estimated',
+    rankingAdjustment: (auditResult.topNextActions || []).find(item => item.key === r.key)?.rankingAdjustment || 0,
+  }));
+}
+
+function buildOptionalModules(platform, stacks, assets, recommendedDomainPacks = []) {
+  if (platform === 'codex') {
+    const modules = [];
+
+    if (!assets.instructionPath) modules.push('AGENTS.md baseline');
+    if (!assets.configPath) modules.push('Codex config baseline');
+    if (assets.counts.rules === 0) modules.push('Codex rules baseline');
+    if (assets.counts.hooks === 0) modules.push('Hooks scaffold');
+    if (assets.counts.skills === 0) modules.push('Repo-local skills starter');
+    if (assets.counts.agents === 0) modules.push('Subagents starter');
+    if (assets.counts.mcpServers === 0) modules.push('MCP baseline');
+    if (assets.counts.workflows === 0) modules.push('CI / review workflow starter');
+    for (const pack of recommendedDomainPacks) {
+      for (const moduleName of pack.recommendedModules || []) {
+        modules.push(moduleName);
+      }
+    }
+
+    return [...new Set(modules)].slice(0, 8);
+  }
+
+  const stackKeys = stacks.map(s => s.key);
+  const modules = [];
+
+  if (!assets.files.claudeMd) modules.push('CLAUDE.md baseline');
+  if (assets.counts.commands === 0) modules.push('Slash commands');
+  if (assets.counts.hooks === 0) modules.push('Hooks automation');
+  if (!assets.permissions || !assets.permissions.hasDenyRules) modules.push('Permission safety profile');
+  if (assets.counts.rules === 0) modules.push('Path-specific rules');
+  if (stackKeys.some(k => ['react', 'nextjs', 'vue', 'angular', 'svelte'].includes(k))) modules.push('Frontend pack');
+  if (stackKeys.some(k => ['node', 'python', 'django', 'fastapi', 'go', 'rust', 'java'].includes(k))) modules.push('Backend pack');
+  if (stackKeys.some(k => ['docker', 'terraform', 'kubernetes'].includes(k))) modules.push('DevOps pack');
+  if (assets.counts.agents === 0) modules.push('Specialized agents');
+
+  return [...new Set(modules)].slice(0, 8);
+}
+
+function buildRiskNotes(platform, auditResult, assets, maturity) {
+  if (platform === 'codex') {
+    const notes = [];
+    if (!assets.instructionPath) notes.push('No AGENTS.md exists yet, so Codex starts without repo-specific instructions.');
+    if (!assets.configPath) notes.push('No .codex/config.toml exists yet, so approval, sandbox, and history posture are implicit.');
+    if (assets.trust && assets.trust.approvalPolicy === 'never') {
+      notes.push('approval_policy is set to `never`; make sure that autonomy level is truly intended for this repo.');
+    }
+    if (assets.trust && assets.trust.sandboxMode === 'danger-full-access') {
+      notes.push('sandbox_mode is `danger-full-access`, which removes Codex runtime guardrails and should stay exceptional.');
+    }
+    if (assets.counts.mcpServers > 0 && assets.trust && !assets.trust.isTrustedProject) {
+      notes.push('This repo appears to rely on project-scoped MCP, but the project trust path is not clearly established.');
+    }
+    if (maturity === 'mature') {
+      notes.push('This repo already has meaningful Codex assets, so advisory mode should preserve and extend them instead of flattening them.');
+    }
+    for (const caveat of auditResult.platformCaveats || []) {
+      if (caveat && caveat.message) {
+        notes.push(caveat.message);
+      }
+    }
+    return [...new Set(notes)].slice(0, 5);
+  }
+
+  const notes = [];
+  if (!assets.files.claudeMd) notes.push('No CLAUDE.md exists yet, so Claude has no persistent project-specific guidance.');
+  if (assets.permissions && assets.permissions.defaultMode === 'bypassPermissions') {
+    notes.push('Current settings use bypassPermissions, which is risky for broader team adoption.');
+  }
+  if (!assets.permissions || !assets.permissions.hasDenyRules) {
+    notes.push('Permissions lack deny rules, so secret access and destructive commands are not strongly guarded.');
+  }
+  if (maturity === 'mature') {
+    notes.push('This repo already has meaningful Claude assets, so augment mode should preserve existing structure instead of overwriting it.');
+  }
+  if (auditResult.results.some(r => r.key === 'ciPipeline' && r.passed === false)) {
+    notes.push('Without CI enforcement, readiness can drift after setup.');
+  }
+  return notes.slice(0, 5);
+}
+
+function buildRolloutOrder(report) {
+  if (report.platform === 'codex') {
+    const steps = [];
+    if (!report.existingPlatformAssets.instructionPath) steps.push('Create a project-specific AGENTS.md baseline');
+    if (!report.existingPlatformAssets.configPath) steps.push('Create a safe `.codex/config.toml` baseline with explicit trust settings');
+    if (report.recommendedDomainPacks.length > 0) {
+      steps.push(`Start from the ${report.recommendedDomainPacks.map((pack) => pack.label).join(' + ')} pack guidance before adding optional Codex surfaces`);
+    }
+    if (report.gapsIdentified.some(g => g.category === 'trust' || g.category === 'config')) steps.push('Make approval, sandbox, history, and network posture explicit');
+    if (report.gapsIdentified.some(g => g.category === 'rules')) steps.push('Add Codex rules for risky command classes before expanding automation');
+    if (report.gapsIdentified.some(g => g.category === 'mcp')) steps.push('Add MCP only where the repo really needs live external context and the trust boundary is clear');
+    if (report.gapsIdentified.some(g => g.category === 'skills' || g.category === 'agents')) steps.push('Add skills and subagents only after the baseline contract is stable');
+    if (report.gapsIdentified.some(g => g.category === 'review' || g.category === 'automation')) steps.push('Add review and CI automation after local verification is explicit');
+    return steps.length > 0 ? steps : ['Preserve the current Codex baseline and tighten remaining quality-deep items'];
+  }
+
+  const steps = [];
+  if (!report.existingClaudeAssets.claudeMd) steps.push('Create a project-specific CLAUDE.md baseline');
+  if (report.gapsIdentified.some(g => g.category === 'security')) steps.push('Add safe settings and deny rules');
+  if (report.gapsIdentified.some(g => g.category === 'automation')) steps.push('Add hooks and automate verification');
+  if (report.gapsIdentified.some(g => g.category === 'workflow')) steps.push('Add commands, rules, and specialization modules');
+  if (report.gapsIdentified.some(g => g.category === 'devops')) steps.push('Connect CI threshold enforcement');
+  if (steps.length === 0) steps.push('Tighten quality-deep items and preserve the current setup');
+  return steps;
+}
+
+/**
+ * Analyze a project's Claude Code setup and produce a structured recommendation report.
+ * @param {Object} options - Analysis options.
+ * @param {string} options.dir - Project directory to analyze.
+ * @param {string} [options.mode='augment'] - Analysis mode ('augment' or 'suggest-only').
+ * @returns {Promise<Object>} Structured report with project summary, gaps, strengths, and recommendations.
+ */
+async function analyzeProject(options) {
+  const mode = options.mode || 'augment';
+  const platform = options.platform === 'codex' ? 'codex' : 'claude';
+  const platformLabel = platform === 'codex' ? 'Codex' : 'Claude';
+  const ContextClass = platform === 'codex' ? CodexProjectContext : ProjectContext;
+  const ctx = new ContextClass(options.dir);
+  const stacks = ctx.detectStacks(STACKS);
+  const auditResult = await audit({ ...options, silent: true, platform });
+  const assets = platform === 'codex' ? collectCodexAssets(ctx) : collectClaudeAssets(ctx);
+  const metadata = detectProjectMetadata(ctx);
+  const maturity = detectMaturity(platform, assets);
+  const mainDirs = detectMainDirs(ctx);
+  const recommendedDomainPacks = platform === 'codex'
+    ? detectCodexDomainPacks(ctx, stacks, assets)
+    : detectDomainPacks(ctx, stacks, assets);
+  const recommendedMcpPacks = platform === 'claude' ? recommendMcpPacks(stacks, recommendedDomainPacks, { ctx, assets }) : [];
+  const repoArchetype = buildRepoArchetypeProfile({
+    ctx,
+    platform,
+    stacks,
+    assets,
+    recommendedDomainPacks,
+    recommendedMcpPacks,
+    maturity,
+  });
+  const recommendedOperatingProfile = buildOperatingProfile({
+    dir: options.dir,
+    platform,
+    repoArchetype,
+    recommendedDomainPacks,
+    recommendedMcpPacks,
+  });
+  const adoptionGuidance = buildAdoptionAdvisor({
+    platform,
+    repoArchetype,
+    recommendedOperatingProfile,
+    recommendedDomainPacks,
+    recommendedMcpPacks,
+    env: options.env || {},
+  });
+
+  const report = {
+    platform,
+    platformLabel,
+    mode,
+    writeBehavior: 'No files are written in this mode.',
+    projectSummary: {
+      name: metadata.name,
+      description: metadata.description,
+      directory: options.dir,
+      stacks: stacks.map(s => s.label),
+      domains: recommendedDomainPacks.map(pack => pack.label),
+      maturity,
+      archetype: repoArchetype.label,
+      workflow: repoArchetype.primaryWorkflow.label,
+      riskLevel: repoArchetype.riskProfile.label,
+      operatingProfile: recommendedOperatingProfile.label,
+      adoptionPlan: adoptionGuidance.summary.label,
+      score: auditResult.score,
+      organicScore: auditResult.organicScore,
+      checkCount: auditResult.checkCount,
+    },
+    platformScopeNote: auditResult.platformScopeNote || null,
+    platformCaveats: auditResult.platformCaveats || [],
+    repoArchetype,
+    recommendedOperatingProfile,
+    adoptionGuidance,
+    detectedArchitecture: {
+      repoType: stacks.length > 0 ? 'stack-detected repo' : 'generic repo',
+      mainDirectories: mainDirs,
+      stackSignals: stacks.map(s => s.key),
+      stackFamily: repoArchetype.stackFamily.label,
+      topology: repoArchetype.topology.label,
+      workflow: repoArchetype.primaryWorkflow.label,
+      riskLevel: repoArchetype.riskProfile.label,
+    },
+    existingPlatformAssets: assets,
+    strengthsPreserved: toStrengths(auditResult.results),
+    gapsIdentified: toGaps(auditResult.results),
+    topNextActions: auditResult.topNextActions || auditResult.quickWins,
+    recommendedImprovements: toRecommendations(auditResult),
+    recommendedDomainPacks,
+    recommendedMcpPacks,
+    riskNotes: buildRiskNotes(platform, auditResult, assets, maturity),
+    optionalModules: buildOptionalModules(platform, stacks, assets, recommendedDomainPacks),
+  };
+
+  if (platform === 'claude') {
+    report.existingClaudeAssets = {
+      claudeMd: assets.files.claudeMd,
+      settings: assets.settingsSource,
+      commands: assets.files.commands,
+      rules: assets.files.rules,
+      hooks: assets.files.hooks,
+      agents: assets.files.agents,
+      skills: assets.files.skills,
+      mcpServers: assets.counts.mcpServers,
+    };
+  } else {
+    report.existingCodexAssets = {
+      agentsMd: assets.instructionPath,
+      config: assets.configPath,
+      rules: assets.files.rules,
+      hooks: assets.files.hooks,
+      skills: assets.files.skills,
+      agents: assets.files.agents,
+      workflows: assets.files.workflows,
+      mcpServers: assets.counts.mcpServers,
+    };
+  }
+
+  report.suggestedRolloutOrder = buildRolloutOrder(report);
+  return report;
+}
+
+function printAnalysis(report, options = {}) {
+  if (options.json) {
+    console.log(JSON.stringify(report, null, 2));
+    return;
+  }
+
+  const modeLabel = report.mode === 'suggest-only' ? 'suggest-only' : report.mode;
+  console.log('');
+  console.log(c(`  nerviq ${report.platform === 'codex' ? 'codex ' : ''}${modeLabel}`, 'bold'));
+  console.log(c('  ═══════════════════════════════════════', 'dim'));
+  console.log(c(`  ${report.writeBehavior}`, 'dim'));
+  if (report.platformScopeNote) {
+    console.log(c(`  ${report.platformScopeNote.message}`, 'dim'));
+  }
+  console.log('');
+
+  console.log(c('  Project Summary', 'blue'));
+  console.log(`  ${report.projectSummary.name}${report.projectSummary.description ? ` — ${report.projectSummary.description}` : ''}`);
+  console.log(c(`  Stack: ${report.projectSummary.stacks.join(', ') || 'Unknown'}`, 'dim'));
+  if (report.platform === 'claude') {
+    console.log(c(`  Domain packs: ${report.projectSummary.domains.join(', ') || 'Baseline General'}`, 'dim'));
+  } else {
+    console.log(c(`  Platform: ${report.platformLabel}`, 'dim'));
+  }
+  console.log(c(`  Archetype: ${report.repoArchetype.label} | Workflow: ${report.repoArchetype.primaryWorkflow.label} | Risk: ${report.repoArchetype.riskProfile.label}`, 'dim'));
+  console.log(c(`  Maturity: ${report.projectSummary.maturity} | Score: ${report.projectSummary.score}/100 | Organic: ${report.projectSummary.organicScore}/100`, 'dim'));
+  console.log('');
+
+  console.log(c('  Detected Architecture', 'blue'));
+  console.log(c(`  Stack family: ${report.repoArchetype.stackFamily.label} | Topology: ${report.repoArchetype.topology.label} | Confidence: ${report.repoArchetype.confidence}`, 'dim'));
+  console.log(c(`  Main directories: ${report.detectedArchitecture.mainDirectories.join(', ') || 'No strong structure detected yet'}`, 'dim'));
+  console.log(c(`  Signals: ${report.repoArchetype.signals.join(' | ') || 'No strong archetype signals yet'}`, 'dim'));
+  console.log('');
+
+  console.log(c(`  Existing ${report.existingPlatformAssets.label} Assets`, 'blue'));
+  console.log(c(`  ${report.existingPlatformAssets.instructionLabel}: ${report.existingPlatformAssets.instructionPath || 'missing'}`, 'dim'));
+  console.log(c(`  ${report.existingPlatformAssets.configLabel}: ${report.existingPlatformAssets.configPath || 'missing'}`, 'dim'));
+  console.log(c(`  ${report.existingPlatformAssets.summaryLine}`, 'dim'));
+  if (report.platform === 'codex' && report.existingPlatformAssets.trust) {
+    const trustBits = [
+      `Approval: ${report.existingPlatformAssets.trust.approvalPolicy || 'implicit'}`,
+      `Sandbox: ${report.existingPlatformAssets.trust.sandboxMode || 'implicit'}`,
+      `Trusted path: ${report.existingPlatformAssets.trust.isTrustedProject ? 'yes' : 'no'}`,
+    ];
+    console.log(c(`  ${trustBits.join(' | ')}`, 'dim'));
+  }
+  console.log('');
+
+  if (report.strengthsPreserved.length > 0) {
+    console.log(c(`  ${'\u2705'} Strengths Preserved (don't change these)`, 'green'));
+    for (const item of report.strengthsPreserved) {
+      const impactLabel = item.impact ? ` (${item.impact})` : '';
+      console.log(`     ${c('\u2022', 'green')} ${item.name}${c(impactLabel, 'dim')}`);
+    }
+    console.log('');
+  }
+
+  if (report.gapsIdentified.length > 0) {
+    console.log(c('  Gaps Identified', 'yellow'));
+    for (const item of report.gapsIdentified.slice(0, 5)) {
+      console.log(`  - [${item.impact}] ${item.name}`);
+      console.log(c(`    ${item.fix}`, 'dim'));
+    }
+    console.log('');
+  }
+
+  if (report.topNextActions.length > 0) {
+    console.log(c('  Top 5 Next Actions', 'magenta'));
+    report.topNextActions.slice(0, 5).forEach((item, index) => {
+      console.log(`  ${index + 1}. ${item.name}`);
+      console.log(c(`     Why: ${item.why || item.fix}`, 'dim'));
+      if (Array.isArray(item.signals) && item.signals.length > 0) {
+        console.log(c(`     Trace: ${item.signals.join(' | ')}`, 'dim'));
+      }
+      if (item.risk || item.confidence) {
+        console.log(c(`     Risk: ${item.risk || 'low'} | Confidence: ${item.confidence || 'medium'}`, 'dim'));
+      }
+      if (item.fix && item.fix !== item.why) {
+        console.log(c(`     Fix: ${item.fix}`, 'dim'));
+      }
+    });
+    console.log('');
+  }
+
+  if (report.recommendedDomainPacks.length > 0) {
+    console.log(c('  Recommended Domain Packs', 'blue'));
+    for (const pack of report.recommendedDomainPacks) {
+      console.log(`  - ${pack.label}`);
+      console.log(c(`    ${pack.useWhen}`, 'dim'));
+    }
+    console.log('');
+  }
+
+  if (report.recommendedMcpPacks.length > 0) {
+    console.log(c('  Recommended MCP Packs', 'blue'));
+    for (const pack of report.recommendedMcpPacks) {
+      console.log(`  - ${pack.label}`);
+      console.log(c(`    ${pack.adoption}`, 'dim'));
+    }
+    console.log('');
+  }
+
+  if (report.platformCaveats && report.platformCaveats.length > 0) {
+    console.log(c('  Platform Caveats', 'yellow'));
+    for (const item of report.platformCaveats) {
+      console.log(`  - ${item.title}`);
+      console.log(c(`    ${item.message}`, 'dim'));
+    }
+    console.log('');
+  }
+
+  if (report.riskNotes.length > 0) {
+    console.log(c('  Risk Notes', 'red'));
+    for (const note of report.riskNotes) {
+      console.log(`  - ${note}`);
+    }
+    console.log('');
+  }
+
+  if (report.optionalModules.length > 0) {
+    console.log(c('  Optional Modules', 'blue'));
+    console.log(c(`  ${report.optionalModules.join(' | ')}`, 'dim'));
+    console.log('');
+  }
+
+  if (report.recommendedOperatingProfile) {
+    console.log(c('  Recommended Operating Profile', 'blue'));
+    console.log(`  ${report.recommendedOperatingProfile.label}`);
+    console.log(c(`  Permission: ${report.recommendedOperatingProfile.permissionProfile.label} | Governance pack: ${report.recommendedOperatingProfile.governancePack.label}`, 'dim'));
+    console.log(c(`  CI shape: ${report.recommendedOperatingProfile.ciShape.label} | Platforms: ${(report.recommendedOperatingProfile.platformSupport.recommended || []).join(', ') || report.platformLabel}`, 'dim'));
+    console.log(c(`  Hooks: ${report.recommendedOperatingProfile.hooks.map((hook) => hook.key).join(', ')}`, 'dim'));
+    console.log(c(`  Verification: ${report.recommendedOperatingProfile.verification.required.join(', ')}`, 'dim'));
+    console.log('');
+  }
+
+  if (report.adoptionGuidance && Array.isArray(report.adoptionGuidance.items) && report.adoptionGuidance.items.length > 0) {
+    console.log(c('  Adopt / Defer / Ignore', 'blue'));
+    console.log(c(`  ${report.adoptionGuidance.summary.label}`, 'dim'));
+    const groups = [
+      ['adopt', 'Adopt now'],
+      ['defer', 'Defer until prerequisites are ready'],
+      ['ignore', 'Ignore for this repo shape'],
+    ];
+    for (const [decision, label] of groups) {
+      const items = report.adoptionGuidance.items.filter((item) => item.decision === decision).slice(0, 3);
+      if (items.length === 0) continue;
+      console.log(`  ${label}`);
+      for (const item of items) {
+        console.log(`    - ${item.label}`);
+        console.log(c(`      ${item.why}`, 'dim'));
+      }
+    }
+    console.log('');
+  }
+
+  if (report.suggestedRolloutOrder.length > 0) {
+    console.log(c('  Suggested Rollout Order', 'blue'));
+    report.suggestedRolloutOrder.forEach((item, index) => {
+      console.log(`  ${index + 1}. ${item}`);
+    });
+    console.log('');
+  }
+}
+
+/**
+ * Export an analysis report as a formatted markdown string.
+ * @param {Object} report - The report object returned by analyzeProject().
+ * @returns {string} Markdown-formatted report content.
+ */
+function exportMarkdown(report) {
+  const lines = [];
+  lines.push(`# Nerviq Analysis Report`);
+  lines.push(`## ${report.platformLabel} ${report.mode === 'suggest-only' ? 'Suggest-Only' : 'Augment'} Mode`);
+  lines.push('');
+  lines.push(`**Project:** ${report.projectSummary.name}${report.projectSummary.description ? ` — ${report.projectSummary.description}` : ''}`);
+  lines.push(`**Date:** ${new Date().toISOString().split('T')[0]}`);
+  lines.push(`**Platform:** ${report.platformLabel}`);
+  lines.push(`**Score:** ${report.projectSummary.score}/100 | **Organic:** ${report.projectSummary.organicScore}/100`);
+  lines.push(`**Stacks:** ${report.projectSummary.stacks.join(', ') || 'None detected'}`);
+  if (report.platform === 'claude') {
+    lines.push(`**Domain Packs:** ${report.projectSummary.domains.join(', ') || 'Baseline General'}`);
+  }
+  lines.push(`**Archetype:** ${report.repoArchetype.label}`);
+  lines.push(`**Workflow:** ${report.repoArchetype.primaryWorkflow.label}`);
+  lines.push(`**Risk posture:** ${report.repoArchetype.riskProfile.label}`);
+  lines.push(`**Operating profile:** ${report.recommendedOperatingProfile.label}`);
+  lines.push(`**Adoption plan:** ${report.adoptionGuidance.summary.label}`);
+  lines.push(`**Maturity:** ${report.projectSummary.maturity}`);
+  lines.push('');
+
+  if (report.platformScopeNote) {
+    lines.push(`> ${report.platformScopeNote.message}`);
+    lines.push('');
+  }
+
+  lines.push(`## Existing ${report.existingPlatformAssets.label} Assets`);
+  lines.push('');
+  lines.push(`- **${report.existingPlatformAssets.instructionLabel}:** ${report.existingPlatformAssets.instructionPath || 'missing'}`);
+  lines.push(`- **${report.existingPlatformAssets.configLabel}:** ${report.existingPlatformAssets.configPath || 'missing'}`);
+  lines.push(`- **Summary:** ${report.existingPlatformAssets.summaryLine}`);
+  if (report.platform === 'codex' && report.existingPlatformAssets.trust) {
+    lines.push(`- **Approval policy:** ${report.existingPlatformAssets.trust.approvalPolicy || 'implicit'}`);
+    lines.push(`- **Sandbox mode:** ${report.existingPlatformAssets.trust.sandboxMode || 'implicit'}`);
+    lines.push(`- **Trusted project path:** ${report.existingPlatformAssets.trust.isTrustedProject ? 'yes' : 'no'}`);
+  }
+  lines.push('');
+
+  lines.push('## Repo Archetype');
+  lines.push('');
+  lines.push(`- **Label:** ${report.repoArchetype.label}`);
+  lines.push(`- **Summary:** ${report.repoArchetype.summary}`);
+  lines.push(`- **Stack family:** ${report.repoArchetype.stackFamily.label}`);
+  lines.push(`- **Topology:** ${report.repoArchetype.topology.label}`);
+  lines.push(`- **Primary workflow:** ${report.repoArchetype.primaryWorkflow.label}`);
+  lines.push(`- **Risk posture:** ${report.repoArchetype.riskProfile.label}`);
+  lines.push(`- **Confidence:** ${report.repoArchetype.confidence}`);
+  if (report.repoArchetype.signals.length > 0) {
+    lines.push(`- **Signals:** ${report.repoArchetype.signals.join(', ')}`);
+  }
+  lines.push('');
+
+  lines.push('## Recommended Operating Profile');
+  lines.push('');
+  lines.push(`- **Label:** ${report.recommendedOperatingProfile.label}`);
+  lines.push(`- **Summary:** ${report.recommendedOperatingProfile.summary}`);
+  lines.push(`- **Permission profile:** ${report.recommendedOperatingProfile.permissionProfile.label}`);
+  lines.push(`- **Governance pack:** ${report.recommendedOperatingProfile.governancePack.label}`);
+  lines.push(`- **Platform support:** ${(report.recommendedOperatingProfile.platformSupport.recommended || []).join(', ') || report.platformLabel}`);
+  if (report.recommendedOperatingProfile.platformSupport.optionalExpansion) {
+    lines.push(`- **Optional expansion:** ${report.recommendedOperatingProfile.platformSupport.optionalExpansion}`);
+  }
+  lines.push(`- **CI shape:** ${report.recommendedOperatingProfile.ciShape.label}`);
+  lines.push(`- **Verification:** ${report.recommendedOperatingProfile.verification.required.join(', ')}`);
+  lines.push(`- **Hooks:** ${report.recommendedOperatingProfile.hooks.map((hook) => hook.key).join(', ')}`);
+  lines.push('');
+
+  lines.push('## Adopt / Defer / Ignore');
+  lines.push('');
+  const decisionGroups = [
+    ['adopt', 'Adopt now'],
+    ['defer', 'Defer'],
+    ['ignore', 'Ignore'],
+  ];
+  for (const [decision, label] of decisionGroups) {
+    const items = report.adoptionGuidance.items.filter((item) => item.decision === decision);
+    if (items.length === 0) continue;
+    lines.push(`### ${label}`);
+    lines.push('');
+    for (const item of items) {
+      lines.push(`- **${item.label}** — ${item.why}`);
+      lines.push(`  Evidence: ${item.evidence.join(' | ')}`);
+      lines.push(`  Prerequisites: ${item.prerequisites.length > 0 ? item.prerequisites.join(' | ') : 'None'}`);
+      lines.push(`  Expected benefit: ${item.expectedBenefit}`);
+      lines.push(`  Rollback safety: ${item.rollbackSafety}`);
+    }
+    lines.push('');
+  }
+
+  if (report.strengthsPreserved.length > 0) {
+    lines.push('## Strengths Preserved (don\'t change these)');
+    lines.push('');
+    for (const item of report.strengthsPreserved) {
+      const impactLabel = item.impact ? ` (${item.impact})` : '';
+      lines.push(`- **${item.name}**${impactLabel} — ${item.why || 'Already configured.'}`);
+    }
+    lines.push('');
+  }
+
+  if (report.gapsIdentified.length > 0) {
+    lines.push('## Gaps Identified');
+    lines.push('');
+    lines.push('| Gap | Impact | Fix |');
+    lines.push('|-----|--------|-----|');
+    for (const item of report.gapsIdentified) {
+      lines.push(`| ${item.name} | ${item.impact} | ${item.fix} |`);
+    }
+    lines.push('');
+  }
+
+  if (report.topNextActions.length > 0) {
+    lines.push('## Top Next Actions');
+    lines.push('');
+    report.topNextActions.slice(0, 5).forEach((item, index) => {
+      lines.push(`${index + 1}. **${item.name}**`);
+      lines.push(`   - Why: ${item.why || item.fix}`);
+      if (Array.isArray(item.signals) && item.signals.length > 0) {
+        lines.push(`   - Trace: ${item.signals.join(' | ')}`);
+      }
+      if (item.risk || item.confidence) {
+        lines.push(`   - Risk / Confidence: ${item.risk || 'low'} / ${item.confidence || 'medium'}`);
+      }
+      if (item.fix && item.fix !== item.why) {
+        lines.push(`   - Fix: ${item.fix}`);
+      }
+    });
+    lines.push('');
+  }
+
+  if (report.recommendedDomainPacks.length > 0) {
+    lines.push('## Recommended Domain Packs');
+    lines.push('');
+    for (const pack of report.recommendedDomainPacks) {
+      lines.push(`- **${pack.label}**: ${pack.useWhen}`);
+    }
+    lines.push('');
+  }
+
+  if (report.recommendedMcpPacks.length > 0) {
+    lines.push('## Recommended MCP Packs');
+    lines.push('');
+    for (const pack of report.recommendedMcpPacks) {
+      lines.push(`- **${pack.label}**: ${pack.useWhen}`);
+    }
+    lines.push('');
+  }
+
+  if (report.platformCaveats && report.platformCaveats.length > 0) {
+    lines.push('## Platform Caveats');
+    lines.push('');
+    for (const item of report.platformCaveats) {
+      lines.push(`- **${item.title}**: ${item.message}`);
+    }
+    lines.push('');
+  }
+
+  if (report.riskNotes.length > 0) {
+    lines.push('## Risk Notes');
+    lines.push('');
+    for (const note of report.riskNotes) {
+      lines.push(`- ⚠️ ${note}`);
+    }
+    lines.push('');
+  }
+
+  if (report.suggestedRolloutOrder.length > 0) {
+    lines.push('## Suggested Rollout Order');
+    lines.push('');
+    report.suggestedRolloutOrder.forEach((item, index) => {
+      lines.push(`${index + 1}. ${item}`);
+    });
+    lines.push('');
+  }
+
+  lines.push('---');
+  lines.push(`*Generated by nerviq v${require('../package.json').version}*`);
+  return lines.join('\n');
+}
+
+module.exports = { analyzeProject, printAnalysis, exportMarkdown };