@nerviq/cli 0.0.1 → 0.9.0-beta.2

package/src/setup.js

@@ -0,0 +1,1274 @@
+/**
+ * Setup engine - applies recommended Claude Code configuration to a project.
+ * v1.8.0 - Starter-safe setup engine with reusable planning primitives.
+ */
+
+const fs = require('fs');
+const path = require('path');
+const { TECHNIQUES, STACKS } = require('./techniques');
+const { ProjectContext } = require('./context');
+const { audit } = require('./audit');
+const { buildSettingsForProfile } = require('./governance');
+const { getMcpPackPreflight } = require('./mcp-packs');
+const { setupCodex } = require('./codex/setup');
+
+// ============================================================
+// Helper: detect project scripts from package.json
+// ============================================================
+function detectScripts(ctx) {
+  const pkg = ctx.jsonFile('package.json');
+  if (!pkg || !pkg.scripts) return {};
+  const relevant = ['test', 'build', 'lint', 'dev', 'start', 'format', 'typecheck', 'check'];
+  const found = {};
+  for (const key of relevant) {
+    if (pkg.scripts[key]) {
+      found[key] = pkg.scripts[key];
+    }
+  }
+  return found;
+}
+
+// ============================================================
+// Helper: detect key dependencies and generate guidelines
+// ============================================================
+function detectDependencies(ctx) {
+  const pkg = ctx.jsonFile('package.json') || {};
+  const allDeps = { ...(pkg.dependencies || {}), ...(pkg.devDependencies || {}) };
+  const guidelines = [];
+
+  // Data fetching
+  if (allDeps['@tanstack/react-query']) {
+    guidelines.push('- Use React Query (TanStack Query) for all server data fetching — never raw useEffect + fetch');
+    guidelines.push('- Define query keys as constants. Invalidate related queries after mutations');
+  }
+  if (allDeps['swr']) {
+    guidelines.push('- Use SWR for data fetching with automatic revalidation');
+  }
+
+  // Validation
+  if (allDeps['zod']) {
+    guidelines.push('- Use Zod for all input validation and type inference (z.infer<typeof schema>)');
+    guidelines.push('- Define schemas in a shared location. Use .parse() at API boundaries');
+  }
+
+  // ORM / Database
+  if (allDeps['prisma'] || allDeps['@prisma/client']) {
+    guidelines.push('- Use Prisma for all database operations. Run `npx prisma generate` after schema changes');
+    guidelines.push('- Never write raw SQL unless Prisma cannot express the query');
+  }
+  if (allDeps['drizzle-orm']) {
+    guidelines.push('- Use Drizzle ORM for database operations. Schema-first approach');
+  }
+  if (allDeps['mongoose']) {
+    guidelines.push('- Use Mongoose for MongoDB operations. Define schemas with validation');
+  }
+
+  // Auth
+  if (allDeps['next-auth'] || allDeps['@auth/core']) {
+    guidelines.push('- Use NextAuth.js for authentication. Access session via auth() in Server Components');
+  }
+  if (allDeps['clerk'] || allDeps['@clerk/nextjs']) {
+    guidelines.push('- Use Clerk for authentication. Protect routes with middleware');
+  }
+
+  // State management
+  if (allDeps['zustand']) {
+    guidelines.push('- Use Zustand for client state. Keep stores small and focused');
+  }
+  if (allDeps['@reduxjs/toolkit']) {
+    guidelines.push('- Use Redux Toolkit for state management. Use createSlice and RTK Query');
+  }
+
+  // Styling
+  if (allDeps['tailwindcss']) {
+    guidelines.push('- Use Tailwind CSS for all styling. Avoid inline styles and CSS modules');
+  }
+  if (allDeps['styled-components'] || allDeps['@emotion/react']) {
+    guidelines.push('- Use CSS-in-JS for component styling. Colocate styles with components');
+  }
+
+  // Testing
+  if (allDeps['vitest']) {
+    guidelines.push('- Use Vitest for testing. Colocate test files with source (*.test.ts)');
+  }
+  if (allDeps['jest']) {
+    guidelines.push('- Use Jest for testing. Follow existing test patterns in the codebase');
+  }
+  if (allDeps['playwright'] || allDeps['@playwright/test']) {
+    guidelines.push('- Use Playwright for E2E tests. Keep tests in tests/ or e2e/');
+  }
+
+  // Testing tools
+  if (allDeps['msw']) {
+    guidelines.push('- Use MSW (Mock Service Worker) for API mocking in tests. Define handlers in __mocks__/');
+  }
+  if (allDeps['@testing-library/react']) {
+    guidelines.push('- Use Testing Library for component tests. Prefer userEvent over fireEvent, query by role/label');
+  }
+  if (allDeps['@vitest/coverage-v8'] || allDeps['@vitest/coverage-istanbul']) {
+    guidelines.push('- Coverage configured. Maintain coverage thresholds. Check reports before merging');
+  }
+
+  // tRPC
+  if (allDeps['@trpc/server'] || allDeps['@trpc/client']) {
+    guidelines.push('- Use tRPC for type-safe API calls. Define routers in server, use client hooks in components');
+  }
+
+  // Stripe
+  if (allDeps['stripe']) {
+    guidelines.push('- Use Stripe SDK for payments. Always verify webhooks with stripe.webhooks.constructEvent()');
+  }
+
+  // Resend
+  if (allDeps['resend']) {
+    guidelines.push('- Use Resend for transactional email. Define templates as React components');
+  }
+
+  // Express security
+  if (allDeps['helmet']) {
+    guidelines.push('- Helmet is configured — ensure all middleware is applied before routes');
+  }
+  if (allDeps['jsonwebtoken']) {
+    guidelines.push('- Use JWT for authentication. Always verify tokens with the correct secret/algorithm');
+  }
+  if (allDeps['bcrypt']) {
+    guidelines.push('- Use bcrypt for password hashing. Never store plaintext passwords');
+  }
+  if (allDeps['cors']) {
+    guidelines.push('- CORS is configured — restrict origins to known domains in production');
+  }
+
+  // Monorepo
+  if (allDeps['turbo'] || allDeps['turborepo']) {
+    guidelines.push('- Turborepo monorepo — use `turbo run` for all tasks. Respect package boundaries');
+  }
+  if (allDeps['nx']) {
+    guidelines.push('- Nx monorepo — use `nx affected` for incremental builds and tests');
+  }
+
+  // Python
+  const reqTxt = ctx.fileContent('requirements.txt') || '';
+  if (reqTxt.includes('sqlalchemy')) {
+    guidelines.push('- Use SQLAlchemy for database operations. Define models in models/');
+  }
+  if (reqTxt.includes('pydantic')) {
+    guidelines.push('- Use Pydantic for data validation and serialization');
+  }
+  if (reqTxt.includes('pytest')) {
+    guidelines.push('- Use pytest for testing. Run with `python -m pytest`');
+  }
+  if (reqTxt.includes('alembic')) {
+    guidelines.push('- Use Alembic for database migrations. Run `alembic upgrade head` after model changes');
+  }
+  if (reqTxt.includes('celery')) {
+    guidelines.push('- Use Celery for background tasks. Define tasks in tasks/ or services/');
+  }
+  if (reqTxt.includes('redis')) {
+    guidelines.push('- Redis is available for caching and task queues');
+  }
+  if (reqTxt.includes('langchain')) {
+    guidelines.push('- Use LangChain for chain/agent orchestration. Define chains in chains/ directory');
+  }
+  if (reqTxt.includes('openai')) {
+    guidelines.push('- OpenAI SDK available. Use structured outputs where possible');
+  }
+  if (reqTxt.includes('anthropic')) {
+    guidelines.push('- Anthropic SDK available. Prefer Claude for complex reasoning tasks');
+  }
+  if (reqTxt.includes('chromadb')) {
+    guidelines.push('- Use ChromaDB for local vector storage. Persist collections to disk');
+  }
+  if (reqTxt.includes('pinecone')) {
+    guidelines.push('- Use Pinecone for production vector search. Define index schemas upfront');
+  }
+  if (reqTxt.includes('mlflow')) {
+    guidelines.push('- Use MLflow for experiment tracking. Log all model parameters and metrics');
+  }
+  if (reqTxt.includes('wandb')) {
+    guidelines.push('- Use Weights & Biases for experiment tracking and visualization');
+  }
+  if (reqTxt.includes('transformers')) {
+    guidelines.push('- HuggingFace Transformers available. Use AutoModel/AutoTokenizer for loading');
+  }
+
+  // JS AI/ML/Cloud deps
+  if (allDeps['@anthropic-ai/sdk']) {
+    guidelines.push('- Anthropic SDK configured. Use Messages API with structured tool_use for agents');
+  }
+  if (allDeps['openai']) {
+    guidelines.push('- OpenAI SDK available. Use structured outputs and function calling');
+  }
+  if (allDeps['@modelcontextprotocol/sdk']) {
+    guidelines.push('- MCP SDK available. Build MCP servers with stdio transport');
+  }
+  if (allDeps['langchain'] || allDeps['@langchain/core']) {
+    guidelines.push('- LangChain available. Use LCEL for chain composition');
+  }
+  if (allDeps['@aws-sdk/client-s3'] || allDeps['@aws-sdk/client-dynamodb']) {
+    guidelines.push('- AWS SDK v3 configured. Use modular imports, not aws-sdk v2');
+  }
+  if (allDeps['@aws-cdk/aws-lambda'] || allDeps['aws-cdk-lib']) {
+    guidelines.push('- AWS CDK available. Define stacks in lib/, constructs as separate classes');
+  }
+
+  // Security middleware
+  if (allDeps['express-rate-limit']) {
+    guidelines.push('- Rate limiting configured. Apply to auth endpoints. Set appropriate windowMs and max values');
+  }
+  if (allDeps['hpp']) {
+    guidelines.push('- HPP (HTTP Parameter Pollution) protection enabled');
+  }
+  if (allDeps['csurf']) {
+    guidelines.push('- CSRF protection enabled. Ensure tokens are included in all state-changing requests');
+  }
+
+  // AWS Lambda
+  if (allDeps['@aws-sdk/client-lambda'] || allDeps['@aws-cdk/aws-lambda'] || allDeps['aws-cdk-lib']) {
+    guidelines.push('- Lambda handlers: keep cold start fast, use layers for deps, set appropriate memory/timeout');
+  }
+
+  // Deprecated dependency warnings
+  if (allDeps['moment']) {
+    guidelines.push('- ⚠️ moment.js is deprecated and heavy (330KB). Migrate to date-fns or dayjs');
+  }
+  if (allDeps['request']) {
+    guidelines.push('- ⚠️ request is deprecated. Use fetch (native) or axios instead');
+  }
+  if (allDeps['lodash'] && !allDeps['lodash-es']) {
+    guidelines.push('- Consider replacing lodash with native JS methods or lodash-es for tree-shaking');
+  }
+  if (allDeps['node-sass']) {
+    guidelines.push('- ⚠️ node-sass is deprecated. Migrate to sass (dart-sass)');
+  }
+  if (allDeps['tslint']) {
+    guidelines.push('- ⚠️ TSLint is deprecated. Migrate to ESLint with @typescript-eslint');
+  }
+
+  return guidelines;
+}
+
+// ============================================================
+// Helper: detect main directories
+// ============================================================
+function detectMainDirs(ctx) {
+  const candidates = ['src', 'lib', 'app', 'pages', 'components', 'api', 'routes', 'utils', 'helpers', 'services', 'models', 'controllers', 'views', 'public', 'assets', 'config', 'tests', 'test', '__tests__', 'spec', 'scripts', 'prisma', 'db', 'middleware', 'hooks', 'agents', 'chains', 'workers', 'jobs', 'dags', 'macros', 'migrations'];
+  // Also check inside src/ for nested structure (common in Next.js, React)
+  const srcNested = ['src/components', 'src/app', 'src/pages', 'src/api', 'src/lib', 'src/hooks', 'src/utils', 'src/services', 'src/models', 'src/middleware', 'src/app/api', 'app/api', 'src/agents', 'src/chains', 'src/workers', 'src/jobs', 'models/staging', 'models/marts'];
+  const found = [];
+  const seenNames = new Set();
+
+  for (const dir of [...candidates, ...srcNested]) {
+    if (ctx.hasDir(dir)) {
+      const files = ctx.dirFiles(dir);
+      const displayName = dir.includes('/') ? dir : dir;
+      if (!seenNames.has(displayName)) {
+        found.push({ name: displayName, fileCount: files.length, files: files.slice(0, 10) });
+        seenNames.add(displayName);
+      }
+    }
+  }
+  return found;
+}
+
+function escapeRegex(value) {
+  return value.replace(/[.*+?^${}()|[\]\\]/g, '\\$&');
+}
+
+function extractTomlSection(content, sectionName) {
+  const pattern = new RegExp(`\\[${escapeRegex(sectionName)}\\]([\\s\\S]*?)(?:\\n\\s*\\[|$)`);
+  const match = content.match(pattern);
+  return match ? match[1] : null;
+}
+
+function extractTomlValue(sectionContent, key) {
+  if (!sectionContent) return null;
+  const pattern = new RegExp(`^\\s*${escapeRegex(key)}\\s*=\\s*["']([^"']+)["']`, 'm');
+  const match = sectionContent.match(pattern);
+  return match ? match[1].trim() : null;
+}
+
+function detectProjectMetadata(ctx) {
+  const pkg = ctx.jsonFile('package.json');
+  if (pkg && (pkg.name || pkg.description)) {
+    return {
+      name: pkg.name || path.basename(ctx.dir),
+      description: pkg.description || '',
+    };
+  }
+
+  const pyproject = ctx.fileContent('pyproject.toml') || '';
+  if (pyproject) {
+    const projectSection = extractTomlSection(pyproject, 'project');
+    const poetrySection = extractTomlSection(pyproject, 'tool.poetry');
+    const name = extractTomlValue(projectSection, 'name') ||
+      extractTomlValue(poetrySection, 'name');
+    const description = extractTomlValue(projectSection, 'description') ||
+      extractTomlValue(poetrySection, 'description');
+
+    if (name || description) {
+      return {
+        name: name || path.basename(ctx.dir),
+        description: description || '',
+      };
+    }
+  }
+
+  return {
+    name: path.basename(ctx.dir),
+    description: '',
+  };
+}
+
+// ============================================================
+// Helper: generate Mermaid diagram from directory structure
+// ============================================================
+function generateMermaid(dirs, stacks) {
+  const stackKeys = stacks.map(s => s.key);
+  const dirNames = dirs.map(d => d.name);
+
+  // Build nodes based on what exists
+  const nodes = [];
+  const edges = [];
+  let nodeId = 0;
+  const ids = {};
+
+  function addNode(label, shape) {
+    const id = String.fromCharCode(65 + nodeId++); // A, B, C...
+    ids[label] = id;
+    if (shape === 'db') return `    ${id}[(${label})]`;
+    if (shape === 'round') return `    ${id}(${label})`;
+    return `    ${id}[${label}]`;
+  }
+
+  // Detect Next.js App Router specifically
+  const hasAppRouter = dirNames.includes('app') || dirNames.includes('src/app');
+  const hasPages = dirNames.includes('pages') || dirNames.includes('src/pages');
+  const hasAppApi = dirNames.includes('app/api') || dirNames.includes('src/app/api');
+  const hasSrcComponents = dirNames.includes('src/components') || dirNames.includes('components');
+  const hasSrcHooks = dirNames.includes('src/hooks') || dirNames.includes('hooks');
+  const hasSrcLib = dirNames.includes('src/lib') || dirNames.includes('lib');
+  const hasSrcNode = dirNames.includes('src');
+  const hasAgents = dirNames.includes('src/agents') || dirNames.includes('agents');
+  const hasChains = dirNames.includes('src/chains') || dirNames.includes('chains');
+  const hasWorkers = dirNames.includes('src/workers') || dirNames.includes('workers') || dirNames.includes('jobs');
+  const hasPipelines = dirNames.includes('dags') || dirNames.includes('macros');
+
+  // Smart entry point based on framework
+  const isNextJs = stackKeys.includes('nextjs');
+  const isDjango = stackKeys.includes('django');
+  const isFastApi = stackKeys.includes('fastapi');
+
+  if (isNextJs) {
+    nodes.push(addNode('Next.js', 'round'));
+  } else if (isDjango) {
+    nodes.push(addNode('Django', 'round'));
+  } else if (isFastApi) {
+    nodes.push(addNode('FastAPI', 'round'));
+  } else {
+    nodes.push(addNode('Entry Point', 'round'));
+  }
+
+  const root = ids['Next.js'] || ids['Django'] || ids['FastAPI'] || ids['Entry Point'] || 'A';
+  const pickNodeId = (...labels) => labels.map(label => ids[label]).find(Boolean) || root;
+
+  // Detect layers
+  if (hasAppRouter || hasPages) {
+    const label = hasAppRouter ? 'App Router' : 'Pages';
+    nodes.push(addNode(label, 'default'));
+    edges.push(`    ${root} --> ${ids[label]}`);
+  }
+
+  if (hasAppApi) {
+    nodes.push(addNode('API Routes', 'default'));
+    const parent = ids['App Router'] || ids['Pages'] || root;
+    edges.push(`    ${parent} --> ${ids['API Routes']}`);
+  }
+
+  if (hasSrcComponents) {
+    nodes.push(addNode('Components', 'default'));
+    const parent = ids['App Router'] || ids['Pages'] || root;
+    edges.push(`    ${parent} --> ${ids['Components']}`);
+  }
+
+  if (hasSrcHooks) {
+    nodes.push(addNode('Hooks', 'default'));
+    const parent = ids['Components'] || root;
+    edges.push(`    ${parent} --> ${ids['Hooks']}`);
+  }
+
+  if (hasSrcLib) {
+    nodes.push(addNode('lib/', 'default'));
+    const parent = pickNodeId('API Routes', 'Hooks', 'Components');
+    edges.push(`    ${parent} --> ${ids['lib/']}`);
+  } else if (hasSrcNode && !hasAppRouter && !hasPages) {
+    nodes.push(addNode('src/', 'default'));
+    edges.push(`    ${root} --> ${ids['src/']}`);
+  }
+
+  if (dirNames.includes('api') || dirNames.includes('routes') || dirNames.includes('controllers')) {
+    const label = dirNames.includes('api') ? 'API Layer' : 'Routes';
+    nodes.push(addNode(label, 'default'));
+    const parent = pickNodeId('src/', 'App Router', 'Pages');
+    edges.push(`    ${parent} --> ${ids[label]}`);
+  }
+
+  if (dirNames.includes('services')) {
+    nodes.push(addNode('Services', 'default'));
+    const parent = pickNodeId('API Layer', 'Routes', 'src/', 'App Router', 'Pages');
+    edges.push(`    ${parent} --> ${ids['Services']}`);
+  }
+
+  if (dirNames.includes('models') || dirNames.includes('prisma') || dirNames.includes('db')) {
+    nodes.push(addNode('Data Layer', 'default'));
+    const parent = pickNodeId('Services', 'API Layer', 'Routes', 'src/', 'App Router', 'Pages');
+    edges.push(`    ${parent} --> ${ids['Data Layer']}`);
+    nodes.push(addNode('Database', 'db'));
+    edges.push(`    ${ids['Data Layer']} --> ${ids['Database']}`);
+  }
+
+  if (dirNames.includes('utils') || dirNames.includes('helpers')) {
+    nodes.push(addNode('Utils', 'default'));
+    const parent = pickNodeId('src/', 'Services', 'lib/', 'Components');
+    edges.push(`    ${parent} --> ${ids['Utils']}`);
+  }
+
+  if (dirNames.includes('middleware')) {
+    nodes.push(addNode('Middleware', 'default'));
+    const parent = pickNodeId('API Layer', 'Routes', 'App Router', 'Pages');
+    edges.push(`    ${parent} --> ${ids['Middleware']}`);
+  }
+
+  if (hasChains) {
+    nodes.push(addNode('Chains', 'default'));
+    const parent = pickNodeId('Services', 'src/', 'lib/', 'API Layer');
+    edges.push(`    ${parent} --> ${ids['Chains']}`);
+  }
+
+  if (hasAgents) {
+    nodes.push(addNode('Agents', 'default'));
+    const parent = pickNodeId('Chains', 'Services', 'src/', 'lib/');
+    edges.push(`    ${parent} --> ${ids['Agents']}`);
+  }
+
+  if (hasWorkers) {
+    nodes.push(addNode('Workers', 'default'));
+    const parent = pickNodeId('Services', 'API Layer', 'src/');
+    edges.push(`    ${parent} --> ${ids['Workers']}`);
+  }
+
+  if (hasPipelines) {
+    nodes.push(addNode('Pipelines', 'default'));
+    const parent = pickNodeId('Services', 'Data Layer', 'src/');
+    edges.push(`    ${parent} --> ${ids['Pipelines']}`);
+  }
+
+  if (dirNames.includes('tests') || dirNames.includes('test') || dirNames.includes('__tests__') || dirNames.includes('spec')) {
+    nodes.push(addNode('Tests', 'round'));
+    const parent = pickNodeId('src/', 'App Router', 'Pages', 'Services', 'Components');
+    edges.push(`    ${ids['Tests']} -.-> ${parent}`);
+  }
+
+  // Fallback: if we only have Entry Point, make a generic diagram
+  if (nodes.length <= 1) {
+    return `\`\`\`mermaid
+graph TD
+    A[Entry Point] --> B[Core Logic]
+    B --> C[Data Layer]
+    B --> D[API / Routes]
+    C --> E[(Database)]
+    D --> F[External Services]
+\`\`\`
+<!-- Update this diagram to match your actual architecture -->`;
+  }
+
+  return '```mermaid\ngraph TD\n' + nodes.join('\n') + '\n' + edges.join('\n') + '\n```';
+}
+
+// ============================================================
+// Helper: framework-specific instructions
+// ============================================================
+function getFrameworkInstructions(stacks) {
+  const stackKeys = stacks.map(s => s.key);
+  const sections = [];
+
+  if (stackKeys.includes('nextjs')) {
+    sections.push(`### Next.js
+- Use App Router conventions (app/ directory) when applicable
+- Prefer Server Components by default; add 'use client' only when needed
+- Use next/image for images, next/link for navigation
+- API routes go in app/api/ (App Router) or pages/api/ (Pages Router)
+- Use loading.tsx, error.tsx, and not-found.tsx for route-level UX
+- If app/ exists, use Server Actions for mutations, validate with Zod, and call revalidatePath after writes
+- Route handlers in app/api/ should export named functions: GET, POST, PUT, DELETE
+- Middleware in middleware.ts should handle auth checks, redirects, and headers`);
+  } else if (stackKeys.includes('react')) {
+    sections.push(`### React
+- Use functional components with hooks exclusively
+- Prefer named exports over default exports
+- Keep components under 150 lines; extract sub-components
+- Use custom hooks to share stateful logic
+- Colocate styles, tests, and types with components`);
+  }
+
+  if (stackKeys.includes('vue')) {
+    sections.push(`### Vue
+- Use Composition API with \`<script setup>\` syntax
+- Prefer defineProps/defineEmits macros
+- Keep components under 200 lines
+- Use composables for shared logic`);
+  }
+
+  if (stackKeys.includes('angular')) {
+    sections.push(`### Angular
+- Use standalone components when possible
+- Follow Angular style guide naming conventions
+- Use reactive forms over template-driven forms
+- Keep services focused on a single responsibility`);
+  }
+
+  if (stackKeys.includes('typescript')) {
+    sections.push(`### TypeScript
+- Use \`interface\` for object shapes, \`type\` for unions/intersections
+- Enable strict mode in tsconfig.json
+- Avoid \`any\` — use \`unknown\` and narrow with type guards
+- Prefer \`as const\` assertions over enum when practical
+- Export types alongside their implementations`);
+  }
+
+  if (stackKeys.includes('django')) {
+    sections.push(`### Django
+- Follow fat models, thin views pattern
+- Use class-based views for complex logic, function views for simple
+- Always use Django ORM; avoid raw SQL unless necessary
+- Keep business logic in models or services, not views`);
+  } else if (stackKeys.includes('fastapi')) {
+    sections.push(`### FastAPI
+- Use Pydantic models for request/response validation
+- Use dependency injection for shared logic
+- Keep route handlers thin; delegate to service functions
+- Use async def for I/O-bound endpoints`);
+  }
+
+  if (stackKeys.includes('python') || stackKeys.includes('django') || stackKeys.includes('fastapi')) {
+    sections.push(`### Python
+- Use type hints on all function signatures and return types
+- Follow PEP 8; use f-strings for formatting
+- Prefer pathlib over os.path
+- Use dataclasses or pydantic for structured data
+- Raise specific exceptions; never bare \`except:\``);
+  }
+
+  if (stackKeys.includes('rust')) {
+    sections.push(`### Rust
+- Use Result<T, E> for error handling, avoid unwrap() in production code
+- Prefer &str over String for function parameters
+- Use clippy: \`cargo clippy -- -D warnings\`
+- Structure: src/lib.rs for library, src/main.rs for binary`);
+  }
+
+  if (stackKeys.includes('go')) {
+    sections.push(`### Go
+- Follow standard Go project layout (cmd/, internal/, pkg/)
+- Use interfaces for dependency injection and testability
+- Handle all errors explicitly — never ignore err returns
+- Use context.Context for cancellation and timeouts
+- Prefer table-driven tests
+- Run \`go vet\` and \`golangci-lint\` before committing
+- If using gRPC: define .proto files in proto/ or pkg/proto, generate with protoc
+- If Makefile exists: use make targets for build/test/lint
+- Organize: cmd/ for entry points, internal/ for private packages, pkg/ for public`);
+  }
+
+  if (stackKeys.includes('cpp')) {
+    sections.push(`### C++
+- Follow project coding standards (check .clang-format if present)
+- Use smart pointers (unique_ptr, shared_ptr) over raw pointers
+- Run clang-tidy for static analysis
+- Prefer const references for function parameters
+- Use CMake targets, not raw compiler flags`);
+  }
+
+  if (stackKeys.includes('bazel')) {
+    sections.push(`### Bazel
+- Define BUILD files per package. Keep targets focused
+- Use visibility carefully — prefer package-private
+- Run buildifier for formatting`);
+  }
+
+  if (stackKeys.includes('terraform')) {
+    sections.push(`### Terraform
+- Use modules for reusable infrastructure components
+- Always run \`terraform plan\` before \`terraform apply\`
+- Store state remotely (S3 + DynamoDB, or Terraform Cloud)
+- Use variables.tf for all configurable values
+- Tag all resources consistently
+- If using Helm: define charts in charts/ or helm/, use values.yaml for config
+- Lock providers: always commit .terraform.lock.hcl
+- Use terraform fmt before committing`);
+  }
+
+  const hasJS = stackKeys.some(k => ['react', 'vue', 'angular', 'nextjs', 'node', 'svelte'].includes(k));
+  if (hasJS && !stackKeys.includes('typescript')) {
+    sections.push(`### JavaScript
+- Use \`const\` by default, \`let\` when reassignment needed; never \`var\`
+- Use \`async/await\` over raw Promises
+- Use named exports over default exports
+- Import order: stdlib > external > internal > relative`);
+  }
+
+  return sections.join('\n\n');
+}
+
+// ============================================================
+// TEMPLATES
+// ============================================================
+
+const TEMPLATES = {
+  'claude-md': (stacks, ctx) => {
+    const stackNames = stacks.map(s => s.label).join(', ') || 'General';
+    const stackKeys = stacks.map(s => s.key);
+
+    // --- Detect project details ---
+    const scripts = detectScripts(ctx);
+    const mainDirs = detectMainDirs(ctx);
+    const hasTS = stackKeys.includes('typescript') || ctx.files.includes('tsconfig.json');
+    const hasPython = stackKeys.includes('python') || stackKeys.includes('django') || stackKeys.includes('fastapi');
+    const hasJS = stackKeys.some(k => ['react', 'vue', 'angular', 'nextjs', 'node', 'svelte'].includes(k));
+
+    // --- Build commands section ---
+    let buildSection = '';
+    if (Object.keys(scripts).length > 0) {
+      const lines = [];
+      if (scripts.dev) lines.push(`npm run dev          # ${scripts.dev}`);
+      if (scripts.start) lines.push(`npm start            # ${scripts.start}`);
+      if (scripts.build) lines.push(`npm run build        # ${scripts.build}`);
+      if (scripts.test) lines.push(`npm test             # ${scripts.test}`);
+      if (scripts.lint) lines.push(`npm run lint         # ${scripts.lint}`);
+      if (scripts.format) lines.push(`npm run format       # ${scripts.format}`);
+      if (scripts.typecheck) lines.push(`npm run typecheck    # ${scripts.typecheck}`);
+      if (scripts.check) lines.push(`npm run check        # ${scripts.check}`);
+      buildSection = lines.join('\n');
+    } else if (hasPython) {
+      buildSection = `python -m pytest     # run tests
+python -m mypy .     # type checking
+ruff check .         # lint`;
+    } else if (hasJS) {
+      buildSection = `npm run build        # or: npx tsc --noEmit
+npm test             # or: npx jest / npx vitest
+npm run lint         # or: npx eslint .`;
+    } else {
+      buildSection = '# Add your build command\n# Add your test command\n# Add your lint command';
+    }
+
+    // --- Architecture description ---
+    const mermaid = generateMermaid(mainDirs, stacks);
+
+    let dirDescription = '';
+    if (mainDirs.length > 0) {
+      dirDescription = '\n### Directory Structure\n';
+      for (const dir of mainDirs) {
+        const suffix = dir.fileCount > 0 ? ` (${dir.fileCount} files)` : '';
+        dirDescription += `- \`${dir.name}/\`${suffix}\n`;
+      }
+    }
+
+    // --- Framework-specific instructions ---
+    const frameworkInstructions = getFrameworkInstructions(stacks);
+    let stackSection = frameworkInstructions
+      ? `\n## Stack-Specific Guidelines\n\n${frameworkInstructions}\n`
+      : '';
+
+    // Check for security-focused project
+    const pkg2 = ctx.jsonFile('package.json') || {};
+    const allDeps2 = { ...(pkg2.dependencies || {}), ...(pkg2.devDependencies || {}) };
+    const hasSecurityDeps = allDeps2['helmet'] || allDeps2['jsonwebtoken'] || allDeps2['bcrypt'] || allDeps2['passport'];
+    if (hasSecurityDeps) {
+      stackSection += '\n### Security Best Practices\n';
+      stackSection += '- Follow OWASP Top 10 — run /security-review regularly\n';
+      stackSection += '- Never log sensitive data (passwords, tokens, PII)\n';
+      stackSection += '- Use parameterized queries — never string concatenation for SQL\n';
+      stackSection += '- Set security headers via Helmet. Review CSP policy for your frontend\n';
+      stackSection += '- Rate limit all authentication endpoints\n';
+      stackSection += '- Validate and sanitize all user input at API boundaries\n';
+    }
+
+    // --- TypeScript-specific additions ---
+    let tsSection = '';
+    if (hasTS) {
+      const tsconfig = ctx.jsonFile('tsconfig.json');
+      if (tsconfig) {
+        const strict = tsconfig.compilerOptions && tsconfig.compilerOptions.strict;
+        tsSection = `
+## TypeScript Configuration
+- Strict mode: ${strict ? '**enabled**' : '**disabled** (consider enabling)'}
+- Always fix type errors before committing — do not use \`@ts-ignore\`
+- Run type checking: \`${scripts.typecheck ? 'npm run typecheck' : 'npx tsc --noEmit'}\`
+`;
+      }
+    }
+
+    // --- Dependency-specific guidelines ---
+    const depGuidelines = detectDependencies(ctx);
+    const depSection = depGuidelines.length > 0 ? `
+## Key Dependencies
+${depGuidelines.join('\n')}
+` : '';
+
+    // --- Verification criteria based on detected commands ---
+    const verificationSteps = [];
+    verificationSteps.push('1. All existing tests still pass');
+    verificationSteps.push('2. New code has test coverage');
+    if (scripts.lint || hasPython) {
+      verificationSteps.push(`3. No linting errors (\`${scripts.lint ? 'npm run lint' : 'ruff check .'}\`)`);
+    } else if (hasJS) {
+      verificationSteps.push('3. No linting errors (`npx eslint .`)');
+    } else {
+      verificationSteps.push('3. No linting errors introduced');
+    }
+    if (scripts.build) {
+      verificationSteps.push(`4. Build succeeds (\`npm run build\`)`);
+    }
+    if (hasTS) {
+      verificationSteps.push(`${verificationSteps.length + 1}. No TypeScript errors (\`${scripts.typecheck ? 'npm run typecheck' : 'npx tsc --noEmit'}\`)`);
+    }
+    verificationSteps.push(`${verificationSteps.length + 1}. Changes match the requested scope (no gold-plating)`);
+
+    // --- Read project metadata from package.json or pyproject.toml ---
+    const projectMeta = detectProjectMetadata(ctx);
+    const projectName = projectMeta.name;
+    const projectDesc = projectMeta.description ? ` — ${projectMeta.description}` : '';
+
+    // --- Assemble the final CLAUDE.md ---
+    return `# ${projectName}${projectDesc}
+
+## Architecture
+${mermaid}
+${dirDescription}
+## Stack
+${stackNames}
+${stackSection}${tsSection}${depSection}
+## Build & Test
+\`\`\`bash
+${buildSection}
+\`\`\`
+
+## Working Notes
+- You are a careful engineer working inside this repository. Preserve its existing architecture and naming patterns unless the task requires a change
+- Prefer extending existing modules over creating parallel abstractions
+- Keep changes scoped to the requested task and verify them before marking work complete
+
+<constraints>
+- Never commit secrets, API keys, or .env files
+- Always run tests before marking work complete
+- Prefer editing existing files over creating new ones
+- When uncertain about architecture, ask before implementing
+${hasTS ? '- Do not use @ts-ignore or @ts-expect-error without a tracking issue\n' : ''}\
+${hasJS ? '- Use const by default; never use var\n' : ''}\
+</constraints>
+
+<verification>
+Before completing any task, confirm:
+${verificationSteps.join('\n')}
+</verification>
+
+## Context Management
+- Use /compact when context gets large (above 50% capacity)
+- Prefer focused sessions — one task per conversation
+- If a session gets too long, start fresh with /clear
+- Use subagents for research tasks to keep main context clean
+
+---
+*Generated by [nerviq](https://github.com/nerviq/nerviq) v${require('../package.json').version} on ${new Date().toISOString().split('T')[0]}. Customize this file for your project — a hand-crafted CLAUDE.md will always be better than a generated one.*
+`;
+  },
+
+  'hooks': () => ({
+    'on-edit-lint.js': `#!/usr/bin/env node
+// PostToolUse hook - runs linter after file edits
+const { execSync } = require('child_process');
+const fs = require('fs');
+try {
+  if (fs.existsSync('package.json')) {
+    const pkg = JSON.parse(fs.readFileSync('package.json', 'utf8'));
+    if (pkg.scripts && pkg.scripts.lint) {
+      execSync('npm run lint --silent', { stdio: 'ignore', timeout: 30000 });
+    }
+  }
+} catch (e) { /* linter not available or failed - non-blocking */ }
+`,
+    'protect-secrets.js': `#!/usr/bin/env node
+// PreToolUse hook - blocks reads of secret files
+let input = '';
+process.stdin.on('data', d => input += d);
+process.stdin.on('end', () => {
+  try {
+    const data = JSON.parse(input);
+    const fp = (data.tool_input && data.tool_input.file_path) || '';
+    if (/\\.env$|\\.env\\.|secrets[\\/\\\\]|credentials|\\.pem$|\\.key$/i.test(fp)) {
+      console.log(JSON.stringify({ decision: 'block', reason: 'Blocked: accessing secret/credential files is not allowed.' }));
+    } else {
+      console.log(JSON.stringify({ decision: 'allow' }));
+    }
+  } catch (e) {
+    console.log(JSON.stringify({ decision: 'allow' }));
+  }
+});
+`,
+    'log-changes.js': `#!/usr/bin/env node
+// PostToolUse hook - logs all file changes with timestamps
+const fs = require('fs');
+const path = require('path');
+let input = '';
+process.stdin.on('data', d => input += d);
+process.stdin.on('end', () => {
+  try {
+    const data = JSON.parse(input);
+    const fp = (data.tool_input && data.tool_input.file_path) || '';
+    if (!fp) process.exit(0);
+    const toolName = data.tool_name || 'unknown';
+    const logDir = path.join('.claude', 'logs');
+    fs.mkdirSync(logDir, { recursive: true });
+    const ts = new Date().toISOString().replace('T', ' ').split('.')[0];
+    fs.appendFileSync(path.join(logDir, 'file-changes.log'), \`[\${ts}] \${toolName}: \${fp}\\n\`);
+  } catch (e) { /* non-blocking */ }
+});
+`,
+    'session-start.js': `#!/usr/bin/env node
+// SessionStart hook - prepares logs and records session entry
+const fs = require('fs');
+const path = require('path');
+const logDir = path.join('.claude', 'logs');
+fs.mkdirSync(logDir, { recursive: true });
+const ts = new Date().toISOString().replace('T', ' ').split('.')[0];
+fs.appendFileSync(path.join(logDir, 'sessions.log'), \`[\${ts}] session started\\n\`);
+`,
+  }),
+
+  'commands': (stacks) => {
+    const stackKeys = stacks.map(s => s.key);
+    const isNext = stackKeys.includes('nextjs');
+    const isDjango = stackKeys.includes('django');
+    const isFastApi = stackKeys.includes('fastapi');
+    const isPython = stackKeys.includes('python') || isDjango || isFastApi;
+    const hasDocker = stackKeys.includes('docker');
+
+    const cmds = {};
+
+    // Test command - stack-specific
+    if (isNext) {
+      cmds['test.md'] = `Run the test suite for this Next.js project.
+
+## Steps:
+1. Run \`npm test\` (or \`npx vitest run\`)
+2. If tests fail, check for missing mocks or async issues
+3. For component tests, ensure React Testing Library patterns are used
+4. For API route tests, check request/response handling
+5. Report: total, passed, failed, coverage if available
+`;
+    } else if (isPython) {
+      cmds['test.md'] = `Run the test suite for this Python project.
+
+## Steps:
+1. Run \`python -m pytest -v\` (or the project's test command)
+2. Check for fixture issues, missing test database, or import errors
+3. If using Django: \`python manage.py test\`
+4. Report: total, passed, failed, and any tracebacks
+`;
+    } else {
+      cmds['test.md'] = `Run the test suite and report results.
+
+## Steps:
+1. Run the project's test command
+2. If tests fail, analyze the failures
+3. Report: total, passed, failed, and any error details
+`;
+    }
+
+    // Review - always generic (works well as-is)
+    cmds['review.md'] = `Review the current changes for quality and correctness.
+
+## Steps:
+1. Run \`git diff\` to see all changes
+2. Check for: bugs, security issues, missing tests, code style
+3. Provide actionable feedback
+`;
+
+    cmds['security-review.md'] = `Run a focused security review using Claude Code's built-in security workflow.
+
+## Steps:
+1. Review auth, permissions, secrets handling, and data access paths
+2. Run \`/security-review\` for OWASP-focused analysis
+3. Check for unsafe shell commands, token leakage, and risky file access
+4. Report findings ordered by severity with concrete fixes
+`;
+
+    // Deploy - stack-specific
+    if (isNext) {
+      cmds['deploy.md'] = `Pre-deployment checklist for Next.js.
+
+## Pre-deploy:
+1. Run \`git status\` — working tree must be clean
+2. Run \`npm run build\` — must succeed with no errors
+3. Run \`npm test\` — all tests pass
+4. Run \`npm run lint\` — no lint errors
+5. Check for \`console.log\` in production code
+6. Verify environment variables are set in deployment platform
+
+## Deploy:
+1. If Vercel: \`git push\` triggers auto-deploy
+2. If self-hosted: \`npm run build && npm start\`
+3. Verify: check /api/health or main page loads
+4. Tag: \`git tag -a vX.Y.Z -m "Release vX.Y.Z"\`
+`;
+    } else if (hasDocker) {
+      cmds['deploy.md'] = `Pre-deployment checklist with Docker.
+
+## Pre-deploy:
+1. Run \`git status\` — working tree must be clean
+2. Run full test suite — all tests pass
+3. Run \`docker build -t app .\` — must succeed
+4. Run \`docker run app\` locally — smoke test
+
+## Deploy:
+1. Build: \`docker build -t registry/app:latest .\`
+2. Push: \`docker push registry/app:latest\`
+3. Deploy to target environment
+4. Verify health endpoint responds
+5. Tag: \`git tag -a vX.Y.Z -m "Release vX.Y.Z"\`
+`;
+    } else {
+      cmds['deploy.md'] = `Pre-deployment checklist.
+
+## Pre-deploy:
+1. Run \`git status\` — working tree must be clean
+2. Run full test suite — all tests must pass
+3. Run linter — no errors
+4. Verify no secrets in staged changes
+5. Review diff since last deploy
+
+## Deploy:
+1. Confirm target environment
+2. Run deployment command
+3. Verify deployment (health check)
+4. Tag: \`git tag -a vX.Y.Z -m "Release vX.Y.Z"\`
+`;
+    }
+
+    // Fix - always generic with $ARGUMENTS
+    cmds['fix.md'] = `Fix the issue described: $ARGUMENTS
+
+## Steps:
+1. Understand the issue — read relevant code and error messages
+2. Identify the root cause (not just the symptom)
+3. Implement the minimal fix
+4. Write or update tests to cover the fix
+5. Run the full test suite to verify no regressions
+6. Summarize what was wrong and how the fix addresses it
+`;
+
+    // Stack-specific bonus commands
+    if (isNext) {
+      cmds['check-build.md'] = `Run Next.js build check without deploying.
+
+1. Run \`npx next build\`
+2. Check for: TypeScript errors, missing pages, broken imports
+3. Verify no "Dynamic server usage" errors in static pages
+4. Report build output size and any warnings
+`;
+    }
+
+    if (isPython && (isDjango || isFastApi)) {
+      cmds['migrate.md'] = `Run database migrations safely.
+
+1. Check current migration status${isDjango ? ': `python manage.py showmigrations`' : ''}
+2. Create new migration if schema changed${isDjango ? ': `python manage.py makemigrations`' : ''}
+3. Review the generated migration file
+4. Apply: ${isDjango ? '`python manage.py migrate`' : '`alembic upgrade head`'}
+5. Verify: check that the app starts and queries work
+`;
+    }
+
+    return cmds;
+  },
+
+  'skills': () => ({
+    'fix-issue/SKILL.md': `---
+name: fix-issue
+description: Fix a GitHub issue by number
+---
+Fix the GitHub issue: $ARGUMENTS
+
+1. Read the issue details
+2. Search the codebase for relevant files
+3. Implement the fix
+4. Write tests
+5. Create a descriptive commit
+`,
+    'release-check/SKILL.md': `---
+name: release-check
+description: Prepare a release candidate and verify publish readiness
+---
+Prepare a release candidate for: $ARGUMENTS
+
+1. Read CHANGELOG.md and package.json version
+2. Run the test suite and packaging checks
+3. Verify docs, tags, and release notes are aligned
+4. Flag anything that would make the release unsafe or misleading
+`,
+  }),
+
+  'rules': (stacks) => {
+    const rules = {};
+    const hasTS = stacks.some(s => s.key === 'typescript');
+    const hasPython = stacks.some(s => s.key === 'python');
+    const hasFrontend = stacks.some(s => ['react', 'vue', 'angular', 'svelte', 'nextjs'].includes(s.key));
+    const hasBackend = stacks.some(s => ['go', 'python', 'django', 'fastapi', 'rust', 'java'].includes(s.key));
+
+    if (hasFrontend || (hasTS && !hasBackend)) {
+      rules['frontend.md'] = `When editing JavaScript/TypeScript files (*.ts, *.tsx, *.js, *.jsx, *.vue):
+- Use functional components with hooks (React/Vue 3)
+- Add TypeScript interfaces for all props and function params
+- Prefer \`const\` over \`let\`; never use \`var\`
+- Use named exports over default exports
+- Handle errors explicitly — no empty catch blocks
+- Keep component files under 200 lines; extract sub-components
+`;
+    }
+    if (hasBackend) {
+      rules['backend.md'] = `When editing backend code:
+- Handle all errors explicitly — never swallow exceptions silently
+- Validate all external input at API boundaries
+- Use dependency injection for testability
+- Keep route handlers thin — delegate to service/business logic layers
+- Log errors with sufficient context for debugging
+- Never hardcode secrets or credentials
+`;
+    }
+    if (hasPython) {
+      rules['python.md'] = `When editing Python files (*.py):
+- Use type hints for all function signatures and return types
+- Follow PEP 8 conventions; max line length 88 (black default)
+- Use f-strings for string formatting
+- Prefer pathlib.Path over os.path
+- Use \`if __name__ == "__main__":\` guard in scripts
+- Raise specific exceptions, never bare \`except:\`
+`;
+    }
+    rules['tests.md'] = `When writing or editing test files:
+- Each test must have a clear, descriptive name (test_should_X_when_Y)
+- Follow Arrange-Act-Assert (AAA) pattern
+- One assertion per test when practical
+- Never skip or disable tests without a tracking issue
+- Mock external dependencies, not internal logic
+- Include both happy path and edge case tests
+`;
+    rules['repository.md'] = `When changing release, packaging, or workflow files:
+- Keep package.json, CHANGELOG.md, README.md, and docs in sync
+- Prefer tagged release references over floating branch references in public docs
+- Preserve backward compatibility in CLI flags where practical
+- Any automation that writes files must document rollback expectations
+`;
+    return rules;
+  },
+
+  'agents': () => ({
+    'security-reviewer.md': `---
+name: security-reviewer
+description: Reviews code for security vulnerabilities
+tools: [Read, Grep, Glob]
+model: sonnet
+maxTurns: 50
+---
+Review code for security issues:
+- Injection vulnerabilities (SQL, XSS, command injection)
+- Authentication and authorization flaws
+- Secrets or credentials in code
+- Insecure data handling
+`,
+    'release-manager.md': `---
+name: release-manager
+description: Checks release readiness and packaging consistency
+tools: [Read, Grep, Glob]
+model: sonnet
+maxTurns: 50
+---
+Review release readiness:
+- version alignment across package.json, changelog, and docs
+- publish safety and packaging scope
+- missing rollback or migration notes
+- documentation drift that would confuse adopters
+`,
+  }),
+
+  'mermaid': () => `\`\`\`mermaid
+graph TD
+    A[Entry Point] --> B[Core Logic]
+    B --> C[Data Layer]
+    B --> D[API / Routes]
+    C --> E[(Database)]
+    D --> F[External Services]
+\`\`\`
+`,
+};
+
+async function setup(options) {
+  if (options.platform === 'codex') {
+    return setupCodex(options);
+  }
+
+  const ctx = new ProjectContext(options.dir);
+  const stacks = ctx.detectStacks(STACKS);
+  const silent = options.silent === true;
+  const writtenFiles = [];
+  const preservedFiles = [];
+  const mcpPreflightWarnings = getMcpPackPreflight(options.mcpPacks || [])
+    .filter(item => item.missingEnvVars.length > 0);
+
+  function log(message = '') {
+    if (!silent) {
+      console.log(message);
+    }
+  }
+
+  log('');
+  log('\x1b[1m  nerviq\x1b[0m');
+  log('\x1b[2m  ═══════════════════════════════════════\x1b[0m');
+
+  if (stacks.length > 0) {
+    log(`\x1b[36m  Detected: ${stacks.map(s => s.label).join(', ')}\x1b[0m`);
+  }
+  log('');
+
+  let created = 0;
+  let skipped = 0;
+
+  let failedWithTemplates = [];
+  for (const [key, technique] of Object.entries(TECHNIQUES)) {
+    if (technique.passed || technique.check(ctx)) continue;
+    if (!technique.template) continue;
+    failedWithTemplates.push({ key, technique });
+  }
+
+  // Filter by 'only' list if provided (interactive wizard selections)
+  if (options.only && options.only.length > 0) {
+    failedWithTemplates = failedWithTemplates.filter(r => options.only.includes(r.key));
+  }
+
+  for (const { key, technique } of failedWithTemplates) {
+
+    const template = TEMPLATES[technique.template];
+    if (!template) continue;
+
+    // Pass ctx as second argument — only claude-md uses it
+    const result = template(stacks, ctx);
+
+    if (typeof result === 'string') {
+      // Single file template (like CLAUDE.md)
+      // Map technique keys to actual file paths
+      const filePathMap = {
+        'claudeMd': 'CLAUDE.md',
+        'mermaidArchitecture': 'CLAUDE.md', // mermaid is part of CLAUDE.md, skip separate file
+      };
+      if (key === 'mermaidArchitecture') continue; // Mermaid is generated inside CLAUDE.md template
+      const filePath = filePathMap[key] || key;
+      const fullPath = path.join(options.dir, filePath);
+
+      if (!fs.existsSync(fullPath)) {
+        fs.writeFileSync(fullPath, result, 'utf8');
+        writtenFiles.push(filePath);
+        log(`  \x1b[32m✅\x1b[0m Created ${filePath}`);
+        created++;
+      } else {
+        preservedFiles.push(filePath);
+        log(`  \x1b[2m⏭️  Skipped ${filePath} (already exists — your version is kept)\x1b[0m`);
+        skipped++;
+      }
+    } else if (typeof result === 'object') {
+      // Multiple files template (hooks, commands, etc)
+      const dirMap = {
+        'hooks': '.claude/hooks',
+        'commands': '.claude/commands',
+        'skills': '.claude/skills',
+        'rules': '.claude/rules',
+        'agents': '.claude/agents',
+      };
+      const targetDir = dirMap[technique.template] || `.claude/${technique.template}`;
+      const fullDir = path.join(options.dir, targetDir);
+
+      if (!fs.existsSync(fullDir)) {
+        fs.mkdirSync(fullDir, { recursive: true });
+      }
+
+      for (const [fileName, content] of Object.entries(result)) {
+        const filePath = path.join(fullDir, fileName);
+        const fileDir = path.dirname(filePath);
+        if (!fs.existsSync(fileDir)) {
+          fs.mkdirSync(fileDir, { recursive: true });
+        }
+        if (!fs.existsSync(filePath)) {
+          fs.writeFileSync(filePath, content, 'utf8');
+          writtenFiles.push(path.relative(options.dir, filePath));
+          log(`  \x1b[32m✅\x1b[0m Created ${path.relative(options.dir, filePath)}`);
+          created++;
+        } else {
+          preservedFiles.push(path.relative(options.dir, filePath));
+          skipped++;
+        }
+      }
+    }
+  }
+
+  // Auto-register hooks in settings if hooks were created but no settings exist
+  const hooksDir = path.join(options.dir, '.claude/hooks');
+  const settingsPath = path.join(options.dir, '.claude/settings.json');
+  if (fs.existsSync(hooksDir) && !fs.existsSync(settingsPath)) {
+    const hookFiles = fs.readdirSync(hooksDir).filter(f => f.endsWith('.sh') || f.endsWith('.js'));
+    if (hookFiles.length > 0) {
+      const settings = buildSettingsForProfile({
+        profileKey: options.profile || 'safe-write',
+        hookFiles,
+        mcpPackKeys: options.mcpPacks || [],
+      });
+      fs.writeFileSync(settingsPath, JSON.stringify(settings, null, 2), 'utf8');
+      writtenFiles.push('.claude/settings.json');
+      log(`  \x1b[32m✅\x1b[0m Created .claude/settings.json (hooks registered)`);
+      created++;
+    }
+  }
+
+  log('');
+  if (created === 0 && skipped > 0) {
+    log('  \x1b[32m✅\x1b[0m Your project is already well configured!');
+    log(`  \x1b[2m  ${skipped} files already exist and were preserved.\x1b[0m`);
+    log('  \x1b[2m  We never overwrite your existing config — your setup is kept.\x1b[0m');
+  } else if (created > 0) {
+    log(`  \x1b[1m${created} files created.\x1b[0m`);
+    if (skipped > 0) {
+      log(`  \x1b[2m${skipped} existing files preserved (not overwritten).\x1b[0m`);
+    }
+  }
+
+  log('');
+  if (mcpPreflightWarnings.length > 0) {
+    log('\x1b[33m  MCP Preflight Warnings\x1b[0m');
+    for (const warning of mcpPreflightWarnings) {
+      log(`  - ${warning.label}: missing ${warning.missingEnvVars.join(', ')}`);
+      log('  \x1b[2m  Settings were generated with placeholders, but this MCP server will not start until those env vars are set.\x1b[0m');
+    }
+    log('');
+  }
+
+  log('  Run \x1b[1mnpx nerviq audit\x1b[0m to check your score.');
+  log('');
+
+  return {
+    created,
+    skipped,
+    writtenFiles,
+    preservedFiles,
+    stacks,
+    mcpPreflightWarnings,
+  };
+}
+
+module.exports = { setup, TEMPLATES };