@nerviq/cli 0.0.1 → 0.9.0-beta.2

package/src/gemini/patch.js

@@ -0,0 +1,229 @@
+/**
+ * Gemini Patch Intelligence
+ *
+ * Safe patching of existing Gemini CLI files using managed blocks.
+ * Supports GEMINI.md (HTML comment blocks) and settings.json (JSON merge).
+ *
+ * Managed blocks are sections that nerviq controls.
+ * Hand-authored content outside managed blocks is preserved.
+ */
+
+const fs = require('fs');
+const path = require('path');
+const { writeRollbackArtifact, writeActivityArtifact } = require('../activity');
+
+// Managed block markers
+const MANAGED_START_MD = '<!-- nerviq:managed:start -->';
+const MANAGED_END_MD = '<!-- nerviq:managed:end -->';
+const MANAGED_JSON_KEY = '_claudex_managed';
+
+/**
+ * Extract managed blocks from a file.
+ * Returns { before, managed, after } where managed is the content between markers.
+ */
+function extractManagedBlock(content, startMarker, endMarker) {
+  const startIdx = content.indexOf(startMarker);
+  const endIdx = content.indexOf(endMarker);
+
+  if (startIdx === -1 || endIdx === -1 || endIdx <= startIdx) {
+    return { before: content, managed: null, after: '' };
+  }
+
+  return {
+    before: content.substring(0, startIdx),
+    managed: content.substring(startIdx + startMarker.length, endIdx).trim(),
+    after: content.substring(endIdx + endMarker.length),
+  };
+}
+
+/**
+ * Replace or insert a managed block in a file.
+ * If the file already has managed markers, replace the content between them.
+ * If not, append the managed block at the end.
+ */
+function upsertManagedBlock(content, newManaged, startMarker, endMarker) {
+  const { before, managed, after } = extractManagedBlock(content, startMarker, endMarker);
+
+  if (managed !== null) {
+    // Replace existing managed block
+    return `${before}${startMarker}\n${newManaged}\n${endMarker}${after}`;
+  }
+
+  // Append new managed block
+  const separator = content.endsWith('\n') ? '\n' : '\n\n';
+  return `${content}${separator}${startMarker}\n${newManaged}\n${endMarker}\n`;
+}
+
+/**
+ * Patch GEMINI.md with managed sections.
+ * Preserves all hand-authored content.
+ */
+function patchGeminiMd(existingContent, managedSections) {
+  const newManaged = Object.entries(managedSections)
+    .map(([section, content]) => `## ${section}\n${content}`)
+    .join('\n\n');
+
+  return upsertManagedBlock(existingContent, newManaged, MANAGED_START_MD, MANAGED_END_MD);
+}
+
+/**
+ * Patch settings.json by safely merging new keys.
+ * Preserves all existing keys. Only adds new keys or updates
+ * the _claudex_managed namespace without breaking existing config.
+ */
+function patchSettingsJson(existingContent, newKeys) {
+  let existing;
+  try {
+    existing = JSON.parse(existingContent);
+  } catch {
+    existing = {};
+  }
+
+  // Merge new keys without overwriting existing non-managed keys
+  const merged = { ...existing };
+
+  for (const [key, value] of Object.entries(newKeys)) {
+    if (key === MANAGED_JSON_KEY) {
+      // Managed namespace: always overwrite with latest
+      merged[MANAGED_JSON_KEY] = {
+        ...(existing[MANAGED_JSON_KEY] || {}),
+        ...value,
+      };
+    } else if (!(key in existing)) {
+      // Only add keys that don't already exist
+      merged[key] = value;
+    }
+  }
+
+  // Ensure managed key has metadata
+  if (!merged[MANAGED_JSON_KEY]) {
+    merged[MANAGED_JSON_KEY] = {};
+  }
+  merged[MANAGED_JSON_KEY]._updatedAt = new Date().toISOString();
+  merged[MANAGED_JSON_KEY]._generator = nerviq;
+
+  return JSON.stringify(merged, null, 2) + '\n';
+}
+
+/**
+ * Detect if a repo has multiple agent surfaces (Gemini + Claude + Codex coexistence).
+ */
+function detectMixedAgentRepo(dir) {
+  const hasClaude = fs.existsSync(path.join(dir, 'CLAUDE.md')) ||
+    fs.existsSync(path.join(dir, '.claude'));
+  const hasCodex = fs.existsSync(path.join(dir, 'AGENTS.md')) ||
+    fs.existsSync(path.join(dir, '.codex'));
+  const hasGemini = fs.existsSync(path.join(dir, 'GEMINI.md')) ||
+    fs.existsSync(path.join(dir, '.gemini'));
+
+  const platforms = [];
+  if (hasClaude) platforms.push('claude');
+  if (hasCodex) platforms.push('codex');
+  if (hasGemini) platforms.push('gemini');
+
+  return {
+    isMixed: platforms.length >= 2,
+    hasClaude,
+    hasCodex,
+    hasGemini,
+    platforms,
+    guidance: platforms.length >= 2
+      ? `This is a mixed-agent repo (${platforms.join(', ')}). Keep each platform's instructions in its own file (CLAUDE.md, AGENTS.md, GEMINI.md). Do not merge them.`
+      : null,
+  };
+}
+
+/**
+ * Generate a diff preview for a patch operation.
+ */
+function generatePatchPreview(originalContent, patchedContent, filePath) {
+  const origLines = originalContent.split('\n');
+  const patchLines = patchedContent.split('\n');
+
+  const lines = [`--- ${filePath} (original)`, `+++ ${filePath} (patched)`];
+
+  // Simple line-by-line diff showing only changed sections
+  let inChange = false;
+  for (let i = 0; i < Math.max(origLines.length, patchLines.length); i++) {
+    const orig = origLines[i] || '';
+    const patched = patchLines[i] || '';
+    if (orig !== patched) {
+      if (!inChange) {
+        lines.push(`@@ line ${i + 1} @@`);
+        inChange = true;
+      }
+      if (i < origLines.length) lines.push(`-${orig}`);
+      if (i < patchLines.length) lines.push(`+${patched}`);
+    } else {
+      inChange = false;
+    }
+  }
+
+  return lines.join('\n');
+}
+
+/**
+ * Apply a patch to a file with backup and rollback support.
+ */
+function applyPatch(dir, filePath, patchFn, options = {}) {
+  const fullPath = path.join(dir, filePath);
+  const dryRun = options.dryRun === true;
+
+  if (!fs.existsSync(fullPath)) {
+    return { success: false, reason: `${filePath} does not exist`, preview: null };
+  }
+
+  const original = fs.readFileSync(fullPath, 'utf8');
+  const patched = patchFn(original);
+
+  if (patched === original) {
+    return { success: true, reason: 'no changes needed', preview: null, unchanged: true };
+  }
+
+  const preview = generatePatchPreview(original, patched, filePath);
+
+  if (dryRun) {
+    return { success: true, reason: 'dry run', preview, unchanged: false };
+  }
+
+  // Backup + write
+  const backupPath = fullPath + '.claudex-backup';
+  fs.writeFileSync(backupPath, original, 'utf8');
+  fs.writeFileSync(fullPath, patched, 'utf8');
+
+  // Rollback artifact
+  const rollback = writeRollbackArtifact(dir, {
+    sourcePlan: 'gemini-patch',
+    patchedFiles: [filePath],
+    backupFiles: [{ original: filePath, backup: path.relative(dir, backupPath) }],
+    rollbackInstructions: [`Restore ${filePath} from ${path.relative(dir, backupPath)}`],
+  });
+
+  const activity = writeActivityArtifact(dir, 'gemini-patch', {
+    platform: 'gemini',
+    patchedFiles: [filePath],
+    rollbackArtifact: rollback.relativePath,
+  });
+
+  return {
+    success: true,
+    reason: 'patched',
+    preview,
+    unchanged: false,
+    rollbackArtifact: rollback.relativePath,
+    activityArtifact: activity.relativePath,
+  };
+}
+
+module.exports = {
+  MANAGED_START_MD,
+  MANAGED_END_MD,
+  MANAGED_JSON_KEY,
+  extractManagedBlock,
+  upsertManagedBlock,
+  patchGeminiMd,
+  patchSettingsJson,
+  detectMixedAgentRepo,
+  generatePatchPreview,
+  applyPatch,
+};

package/src/gemini/plans.js

@@ -0,0 +1,269 @@
+const path = require('path');
+const { version } = require('../../package.json');
+const { audit } = require('../audit');
+const { analyzeProject } = require('../analyze');
+const { buildGeminiSetupFiles } = require('./setup');
+const { getGeminiMcpPreflight } = require('./mcp-packs');
+
+function maturityFromScore(score) {
+  if (score >= 81) return 'mature';
+  if (score >= 61) return 'solid';
+  if (score >= 41) return 'developing';
+  if (score >= 21) return 'weak';
+  return 'raw';
+}
+
+function triggerMatchesFile(result, filePath) {
+  if (filePath === 'GEMINI.md') {
+    return result.file === 'GEMINI.md' || result.category === 'instructions' || result.category === 'review' || result.category === 'quality-deep';
+  }
+  if (filePath === '.gemini/settings.json') {
+    return result.file === '.gemini/settings.json' || ['config', 'trust', 'hooks', 'mcp', 'agents', 'automation', 'local'].includes(result.category);
+  }
+  if (filePath === '.gemini/settings.json (hooks append)') {
+    return result.category === 'hooks';
+  }
+  if (filePath === '.gemini/commands/README.md') {
+    return result.category === 'commands';
+  }
+  if (filePath === '.gemini/agents/README.md') {
+    return result.category === 'agents';
+  }
+  if (filePath === '.gemini/skills/README.md') {
+    return result.category === 'skills';
+  }
+  if (filePath === '.gemini/policy/README.md') {
+    return result.category === 'policy';
+  }
+  if (filePath === '.gemini/settings.json (MCP append)') {
+    return result.category === 'mcp';
+  }
+  if (filePath === '.github/workflows/gemini-review.yml') {
+    return result.category === 'automation' || result.category === 'review';
+  }
+  return result.file === filePath;
+}
+
+function uniqueValues(items = []) {
+  return [...new Set(items.filter(Boolean))];
+}
+
+function buildDomainPackGuidance(report) {
+  return (report.recommendedDomainPacks || []).map((pack) => ({
+    key: pack.key,
+    label: pack.label,
+    useWhen: pack.useWhen,
+    matchReasons: pack.matchReasons || [],
+    recommendedModules: pack.recommendedModules || [],
+    recommendedProposalFamilies: pack.recommendedProposalFamilies || [],
+    recommendedSurfaces: pack.recommendedSurfaces || [],
+    benchmarkFocus: pack.benchmarkFocus || [],
+  }));
+}
+
+function selectPackContext(filePath, domainPackGuidance = []) {
+  return domainPackGuidance
+    .filter((pack) => {
+      if (!Array.isArray(pack.recommendedSurfaces) || pack.recommendedSurfaces.length === 0) {
+        return true;
+      }
+      return pack.recommendedSurfaces.some((surface) => filePath === surface || filePath.startsWith(surface));
+    })
+    .map((pack) => ({
+      key: pack.key,
+      label: pack.label,
+      why: pack.matchReasons[0] || pack.useWhen,
+      recommendedModules: (pack.recommendedModules || []).slice(0, 3),
+      recommendedProposalFamilies: (pack.recommendedProposalFamilies || []).slice(0, 3),
+      benchmarkFocus: (pack.benchmarkFocus || []).slice(0, 2),
+    }));
+}
+
+const PROPOSAL_FAMILIES = {
+  'GEMINI.md': {
+    id: 'gemini-md',
+    title: 'Create Gemini CLI GEMINI.md baseline',
+    module: 'instructions',
+    risk: 'low',
+    confidence: 'high',
+  },
+  '.gemini/settings.json': {
+    id: 'gemini-settings',
+    title: 'Create Gemini CLI settings.json baseline',
+    module: 'config',
+    risk: 'medium',
+    confidence: 'high',
+  },
+  '.gemini/settings.json (hooks append)': {
+    id: 'gemini-hooks',
+    title: 'Add Gemini CLI hooks scaffold to settings.json',
+    module: 'hooks',
+    risk: 'medium',
+    confidence: 'medium',
+  },
+  '.gemini/commands/README.md': {
+    id: 'gemini-commands',
+    title: 'Create Gemini CLI commands starter',
+    module: 'commands',
+    risk: 'low',
+    confidence: 'high',
+  },
+  '.gemini/agents/README.md': {
+    id: 'gemini-agents',
+    title: 'Create Gemini CLI agents starter',
+    module: 'agents',
+    risk: 'low',
+    confidence: 'medium',
+  },
+  '.gemini/skills/README.md': {
+    id: 'gemini-skills',
+    title: 'Create Gemini CLI skills starter',
+    module: 'skills',
+    risk: 'low',
+    confidence: 'high',
+  },
+  '.gemini/policy/README.md': {
+    id: 'gemini-policy',
+    title: 'Create Gemini CLI policy starter',
+    module: 'policy',
+    risk: 'low',
+    confidence: 'high',
+  },
+  '.gemini/settings.json (MCP append)': {
+    id: 'gemini-mcp',
+    title: 'Add recommended MCP packs to Gemini CLI settings',
+    module: 'mcp',
+    risk: 'medium',
+    confidence: 'high',
+  },
+  '.github/workflows/gemini-review.yml': {
+    id: 'gemini-ci-review',
+    title: 'Create Gemini CLI CI review workflow',
+    module: 'ci',
+    risk: 'medium',
+    confidence: 'medium',
+  },
+};
+
+function resolveProposalFamily(file) {
+  const familyFromFile = file.family
+    ? Object.values(PROPOSAL_FAMILIES).find(f => f.id === file.family)
+    : null;
+  return familyFromFile || PROPOSAL_FAMILIES[file.path] || {
+    id: 'gemini-unknown',
+    title: `Create ${file.path}`,
+    module: 'unknown',
+    risk: 'medium',
+    confidence: 'low',
+  };
+}
+
+function proposalForFile(file, auditResult, domainPackGuidance = []) {
+  const triggers = auditResult.results
+    .filter((result) => result.passed === false && triggerMatchesFile(result, file.path))
+    .sort((a, b) => {
+      const weight = { critical: 3, high: 2, medium: 1, low: 0 };
+      return (weight[b.impact] || 0) - (weight[a.impact] || 0);
+    })
+    .slice(0, 6)
+    .map((result) => ({
+      key: result.key,
+      name: result.name,
+      impact: result.impact,
+      fix: result.fix,
+    }));
+  const packContext = selectPackContext(file.path, domainPackGuidance);
+
+  const familyMeta = resolveProposalFamily(file);
+
+  return {
+    id: familyMeta.id,
+    title: familyMeta.title,
+    module: familyMeta.module,
+    risk: familyMeta.risk,
+    confidence: familyMeta.confidence,
+    triggers,
+    rationale: uniqueValues([
+      ...triggers.map((item) => item.fix),
+      ...packContext.map((item) => `Supports ${item.label} rollout guidance: ${item.why}`),
+    ]),
+    packContext,
+    files: [{
+      path: file.path,
+      action: file.action,
+      currentState: file.currentState,
+      proposedState: file.proposedState,
+      content: file.content,
+      preview: file.content.split('\n').slice(0, 12).join('\n'),
+      diffPreview: [
+        `--- missing`,
+        `+++ ${file.path}`,
+        ...file.content.split('\n').slice(0, 12).map((line) => `+${line}`),
+      ].join('\n'),
+    }],
+    readyToApply: true,
+  };
+}
+
+async function buildGeminiProposalBundle(options) {
+  const auditResult = await audit({ ...options, platform: 'gemini', silent: true });
+  const analysisReport = await analyzeProject({ ...options, platform: 'gemini', mode: 'suggest-only' });
+  const domainPackGuidance = buildDomainPackGuidance(analysisReport);
+  const { files } = buildGeminiSetupFiles(options);
+  const proposals = files.map((file) => proposalForFile(file, auditResult, domainPackGuidance));
+
+  // MCP preflight warnings for any MCP proposals
+  const mcpProposal = proposals.find(p => p.id === 'gemini-mcp');
+  let mcpPreflightWarnings = [];
+  if (mcpProposal) {
+    const mcpFile = files.find(f => f.family === 'gemini-mcp');
+    if (mcpFile && mcpFile.content) {
+      // Parse JSON content to extract server keys
+      let detectedKeys = [];
+      try {
+        const parsed = JSON.parse(mcpFile.content);
+        detectedKeys = Object.keys(parsed);
+      } catch {
+        // Fallback: try regex for serverName patterns
+        const keyMatches = mcpFile.content.match(/"([^"]+)"\s*:/g) || [];
+        detectedKeys = keyMatches.map(m => m.replace(/[":]/g, '').trim());
+      }
+      mcpPreflightWarnings = getGeminiMcpPreflight(detectedKeys)
+        .filter(p => !p.safe)
+        .map(p => ({ key: p.key, label: p.label, warning: p.warning }));
+    }
+  }
+
+  return {
+    schemaVersion: 2,
+    generatedBy: `nerviq@${version}`,
+    createdAt: new Date().toISOString(),
+    platform: 'gemini',
+    directory: options.dir,
+    projectSummary: {
+      name: path.basename(options.dir),
+      score: auditResult.score,
+      organicScore: auditResult.organicScore,
+      maturity: maturityFromScore(auditResult.score),
+      domains: analysisReport.projectSummary.domains || [],
+    },
+    strengthsPreserved: auditResult.results
+      .filter((item) => item.passed === true)
+      .slice(0, 5)
+      .map((item) => item.name),
+    topNextActions: auditResult.topNextActions,
+    recommendedDomainPacks: domainPackGuidance,
+    proposalFamilies: [...new Set(proposals.map(p => p.id))],
+    optionalModules: analysisReport.optionalModules || [],
+    riskNotes: uniqueValues([
+      ...(analysisReport.riskNotes || []),
+      ...((auditResult.platformCaveats || []).map((item) => item.message)),
+    ]),
+    mcpPreflightWarnings,
+    proposals,
+  };
+}
+
+module.exports = {
+  buildGeminiProposalBundle,
+};