@nanonets/graft 0.8.2 → 0.9.1

package/dist/graph/map.js

@@ -1,7 +1,7 @@
-import { languageOf } from "./extract.js";
+import { languageLabelOf } from "./extract.js";
 import { WALK_RELATIONS } from "./relations.js";
 import { scopeLabel, scopeOf, scopesOfGraph } from "./scopes.js";
-import { savingsFooter, savingsFor } from "../context/savings.js";
+import { withSavings, savingsFor } from "../context/savings.js";
 const DEFAULT_MAX_DIRS = 16;
 const DEFAULT_HUBS_PER_DIR = 3;
 const DEFAULT_HOTSPOTS = 12;
@@ -37,12 +37,14 @@ function topHubs(nodes, inDegree, cap) {
         .sort((a, b) => b.inDegree - a.inDegree || a.name.localeCompare(b.name) || a.path.localeCompare(b.path))
         .slice(0, cap);
 }
+/** Display labels, not tree-sitter grammars: a `scripts/` tree of `.mjs` files is
+ * "javascript" here, not "typescript". See {@link languageLabelOf}. */
 function sortedLanguages(paths) {
     const set = new Set();
     for (const p of paths) {
-        const lang = languageOf(p);
-        if (lang)
-            set.add(lang);
+        const label = languageLabelOf(p);
+        if (label)
+            set.add(label);
     }
     return [...set].sort();
 }
@@ -232,6 +234,6 @@ export function formatRepoMap(map) {
     }
     lines.push(`hotspots: ${map.hotspots.map(formatHotspot).join("  ")}`);
     const body = lines.join("\n");
-    return body + savingsFooter(body, map.saved) + "\n";
+    return withSavings(body, map.saved) + "\n";
 }
 //# sourceMappingURL=map.js.map

package/dist/graph/map.js.map

@@ -1 +1 @@
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package/dist/graph/refresh.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"refresh.d.ts","sourceRoot":"","sources":["../../src/graph/refresh.ts"],"names":[],"mappings":"AAkCA,OAAO,EAAmC,KAAK,KAAK,EAAE,MAAM,kBAAkB,CAAC;AAU/E,MAAM,WAAW,aAAa;IAC5B,4DAA4D;IAC5D,SAAS,EAAE,OAAO,CAAC;IACnB,6DAA6D;IAC7D,KAAK,CAAC,EAAE,KAAK,CAAC;IACd,oFAAoF;IACpF,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,cAAc;IAC7B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,iDAAiD;IACjD,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAcD;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,IAAI,CAWzD;AAYD;;;;;;GAMG;AACH,wBAAsB,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CAwDtG;AAED;;;;;GAKG;AACH,wBAAsB,mBAAmB,CACvC,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,EAAE,EAClB,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,aAAa,CAAC,CAsBxB;AAED;wEACwE;AACxE,wBAAgB,WAAW,CAAC,CAAC,EAAE,aAAa,GAAG,MAAM,GAAG,IAAI,CAK3D"}
+{"version":3,"file":"refresh.d.ts","sourceRoot":"","sources":["../../src/graph/refresh.ts"],"names":[],"mappings":"AAuCA,OAAO,EAAmC,KAAK,KAAK,EAAE,MAAM,kBAAkB,CAAC;AAW/E,MAAM,WAAW,aAAa;IAC5B,4DAA4D;IAC5D,SAAS,EAAE,OAAO,CAAC;IACnB,6DAA6D;IAC7D,KAAK,CAAC,EAAE,KAAK,CAAC;IACd,oFAAoF;IACpF,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,cAAc;IAC7B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,iDAAiD;IACjD,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAcD;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,IAAI,CAWzD;AAuCD;;;;;;GAMG;AACH,wBAAsB,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CAyEtG;AAED;;;;;GAKG;AACH,wBAAsB,mBAAmB,CACvC,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,EAAE,EAClB,IAAI,GAAE,cAAmB,GACxB,OAAO,CAAC,aAAa,CAAC,CAsBxB;AAED;wEACwE;AACxE,wBAAgB,WAAW,CAAC,CAAC,EAAE,aAAa,GAAG,MAAM,GAAG,IAAI,CAQ3D"}

package/dist/graph/refresh.js

@@ -25,6 +25,11 @@
  *   at the end of a turn — so retrieval stays cheap and a read stays a read. It
  *   also leaves `stats.json` alone, so that same `Stop` hook still sees `dirty` and
  *   still rebuilds the passive surface.
+ *
+ * One case is not drift but absence: inside a git worktree there is no graph at all,
+ * because `graft/` is gitignored and so was never checked out. The gate covers that
+ * too — it copies the parent checkout's graph in (`./seed.ts`) and then treats the
+ * difference between the two checkouts as ordinary drift, which is exactly what it is.
  */
 import { existsSync } from "node:fs";
 import { join, resolve } from "node:path";
@@ -34,6 +39,7 @@ import { CACHE_DIR } from "../context/node-file.js";
 import { buildGraph } from "./build.js";
 import { driftCount, isClean, probeDrift } from "./fingerprint.js";
 import { invalidateGraphCaches } from "./load.js";
+import { seedGraph } from "./seed.js";
 import { wiringPath } from "./write.js";
 /** How long to wait for another process's in-flight rebuild before giving up and
  * answering from the current graph. Long enough to ride out a small repo's build,
@@ -90,6 +96,30 @@ async function waitForLock(cache) {
         await sleep(LOCK_POLL_MS);
     }
 }
+/**
+ * Copy a parent checkout's graph in, holding the same lock a rebuild would.
+ *
+ * Two MCP tool calls in a fresh worktree arrive here at the same moment, and an 8 MB
+ * copy is long enough for both to start one. The loser waits, then finds the graph
+ * already there and reports nothing — which is why the caller re-checks the file
+ * rather than trusting this return value.
+ */
+async function seedUnderLock(dir, outDir, contextDir) {
+    const lockCache = join(outDir, CACHE_DIR);
+    // `busy` matters: with no graph on disk there is nothing to fall back to, so a
+    // caller that stayed silent here would emit the bare "no matching nodes" this whole
+    // mechanism exists to remove. Say what happened instead.
+    if (!(await waitForLock(lockCache)))
+        return { seeded: false, busy: true };
+    const unhook = releaseOnSignal(lockCache);
+    try {
+        return seedGraph(dir, { contextDir });
+    }
+    finally {
+        unhook();
+        releaseLockIn(lockCache);
+    }
+}
 /**
  * Rebuild `root`'s structural graph if the working tree has moved since the last
  * build. Cheap and side-effect-free when nothing changed, which is the usual case.
@@ -103,26 +133,42 @@ export async function ensureFreshGraph(root, opts = {}) {
     try {
         const dir = resolve(root);
         const outDir = contextDirFor(dir, opts.contextDir);
-        // Nothing built yet: the caller's own "no graph — run graft build" message is
-        // the right answer. Auto-building a whole repo under a query is a surprise,
-        // and it's the one case where the user hasn't opted into graft at all yet.
-        if (!existsSync(wiringPath(outDir)))
-            return CLEAN;
+        let seededFrom;
+        if (!existsSync(wiringPath(outDir))) {
+            // One case has a graph to work with even though this checkout has none: a git
+            // worktree, whose parent checkout's `graft/` git could not check out. Copy it
+            // in and carry on — the drift below is then exactly the diff between the two
+            // checkouts, and repairing it is what makes the copied graph honest here.
+            const seed = await seedUnderLock(dir, outDir, opts.contextDir);
+            seededFrom = seed.from;
+            // Still nothing (not a worktree, parent never built, or a concurrent seed we
+            // lost the race for and which we now re-check for): the caller's own "no graph
+            // — run graft build" message is the right answer. Auto-building a whole repo
+            // under a query is a surprise, and it's the one case where the user hasn't
+            // opted into graft at all yet.
+            if (!existsSync(wiringPath(outDir))) {
+                return seed.busy
+                    ? { refreshed: false, note: "another process is still copying the graph into this worktree — retry the query in a moment" }
+                    : CLEAN;
+            }
+        }
+        const seedNote = seededFrom ? `copied the graph from the main checkout (${seededFrom})` : undefined;
         // null = no fingerprint at all: a graph built before this mechanism existed,
         // or by a different extractor build. Rebuild once — that lays the fingerprint
         // down, so it costs exactly one build, not one per query.
         const drift = probeDrift(dir, outDir);
         if (drift && isClean(drift))
-            return CLEAN;
+            return seedNote ? { refreshed: false, note: seedNote } : CLEAN;
         // On the default layout this is `<root>/graft/.cache/.sync.lock`, the very file
         // the Claude Code hooks lock — so this refresh and the background sync can
         // never rebuild at the same time.
         const lockCache = join(outDir, CACHE_DIR);
         if (!(await waitForLock(lockCache))) {
+            const busy = "a graph rebuild is already in flight — answering from the current graph";
             return {
                 refreshed: false,
                 drift: drift ?? undefined,
-                note: "a graph rebuild is already in flight — answering from the current graph",
+                note: seedNote ? `${seedNote}; ${busy}` : busy,
             };
         }
         const unhook = releaseOnSignal(lockCache);
@@ -136,7 +182,7 @@ export async function ensureFreshGraph(root, opts = {}) {
             const now = drift ? probeDrift(dir, outDir) : null;
             if (now && isClean(now)) {
                 invalidateGraphCaches(outDir);
-                return CLEAN;
+                return seedNote ? { refreshed: false, note: seedNote } : CLEAN;
             }
             // Tier-1 only: no summarizer, so no LLM call and no network, ever. And
             // `graphOnly`: write the graph, the ask sidecar and the fingerprint, nothing
@@ -145,7 +191,7 @@ export async function ensureFreshGraph(root, opts = {}) {
             // card's mtime, and skipping them is most of what keeps this cheap.
             await buildGraph(dir, { contextDir: opts.contextDir, graphOnly: true });
             invalidateGraphCaches(outDir);
-            return { refreshed: true, drift: drift ?? undefined };
+            return { refreshed: true, drift: drift ?? undefined, note: seedNote };
         }
         finally {
             unhook();
@@ -192,11 +238,13 @@ export async function ensureFreshChildren(root, children, opts = {}) {
 /** The one-line note a CLI/MCP surface prints when a refresh actually happened.
  * Null when there's nothing to say (the overwhelmingly common case). */
 export function refreshNote(r) {
-    if (r.note)
-        return `[graft] ${r.note}`;
     if (!r.refreshed)
-        return null;
+        return r.note ? `[graft] ${r.note}` : null;
     const n = r.drift ? driftCount(r.drift) : 0;
-    return `[graft] refreshed the graph (${n || "?"} file${n === 1 ? "" : "s"} changed) before answering`;
+    const built = `refreshed the graph (${n || "?"} file${n === 1 ? "" : "s"} changed) before answering`;
+    // Both facts, when a worktree was seeded *and* the copy needed repairing: the
+    // count is the interesting half (it's the branch diff), the provenance explains
+    // where a graph came from in a directory the user knows they never built.
+    return r.note ? `[graft] ${built} — ${r.note}` : `[graft] ${built}`;
 }
 //# sourceMappingURL=refresh.js.map

package/dist/graph/refresh.js.map

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package/dist/graph/resolve.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"resolve.d.ts","sourceRoot":"","sources":["../../src/graph/resolve.ts"],"names":[],"mappings":"AAgBA,OAAO,KAAK,EAAE,MAAM,EAAQ,MAAM,EAAY,MAAM,YAAY,CAAC;AACjE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAI5C;;sDAEsD;AACtD,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;CACb;AAED,MAAM,WAAW,cAAc;IAC7B;;6FAEyF;IACzF,SAAS,CAAC,EAAE,QAAQ,EAAE,CAAC;CACxB;AAED,wBAAgB,YAAY,CAC1B,KAAK,EAAE,MAAM,EAAE,EACf,QAAQ,EAAE,OAAO,EAAE,EACnB,IAAI,GAAE,cAAmB,GACxB,MAAM,EAAE,CAuFV"}

package/dist/graph/resolve.js

@@ -5,29 +5,16 @@
  * Confidence mirrors the SCIP/Graphify model:
  *   - `extracted`: the target is certain — a match within the same file, an
  *     import specifier, or a structural containment.
- *   - `inferred`: the target was resolved by a unique name match across files,
- *     which name-shadowing could in principle fool.
+ *   - `inferred`: a bare function target was resolved by a unique name match
+ *     across files, which name-shadowing could in principle fool.
  * Ambiguous cross-file matches (a name defined in several files) are dropped
- * rather than guessed, so we never wire an edge to the wrong symbol.
+ * rather than guessed. Member calls are stricter: they require a receiver type
+ * and owner-qualified method match because a unique bare method name says
+ * nothing about the receiver.
  */
 import { posix } from "node:path";
-import { sep } from "node:path";
+import { toPosixPath } from "../util/paths.js";
 const IMPORT_EXTS = [".ts", ".tsx", ".mts", ".cts", ".js", ".jsx", ".mjs", ".cjs", ".py"];
-// Builtin container/value types whose methods are never user-defined symbols in the
-// repo. A typed member call on one of these receivers (`deg.set(...)` where
-// `recvType` is `Map`) must never fall back to the untyped unique-bare-name path —
-// doing so wires it to whatever repo symbol happens to share the method's name
-// (e.g. a class's own `.set` method), which is always wrong. RawEdge carries no
-// language tag, so this is the union of the TS/TSX and Python builtin lists rather
-// than a per-language check; a repo class legitimately named e.g. `dict` colliding
-// with the Python builtin is vanishingly rare, and the failure mode in that case is
-// just a dropped edge (safe), not a wrong one.
-const BUILTIN_CONTAINER_TYPES = new Set([
-    // TS/TSX
-    "Map", "Set", "WeakMap", "WeakSet", "Array", "Promise", "Object", "Date", "RegExp", "Error",
-    // Python
-    "dict", "list", "set", "tuple", "str", "frozenset", "bytes",
-]);
 export function resolveEdges(nodes, rawEdges, opts = {}) {
     const byId = new Map(nodes.map((n) => [n.id, n]));
     const globalName = new Map();
@@ -41,7 +28,7 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
     for (const n of nodes) {
         if (n.kind === "file") {
             if (hasGoModules && n.path.endsWith(".go")) {
-                const dir = posix.dirname(n.path.split(sep).join("/"));
+                const dir = posix.dirname(toPosixPath(n.path));
                 push(goFilesByDir, dir, n.id);
             }
             continue;
@@ -51,11 +38,8 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
         if (!fileMap)
             perFileName.set(n.path, (fileMap = new Map()));
         push(fileMap, n.name, n);
-        if (n.kind === "method") {
-            const post = n.id.slice(n.id.indexOf("#") + 1);
-            const segs = post.split(".");
-            if (segs.length >= 2)
-                push(ownerMethod, `${segs[segs.length - 2]}.${segs[segs.length - 1]}`, n);
+        if (n.kind === "method" && n.owner) {
+            push(ownerMethod, `${n.owner}.${n.name}`, n);
         }
     }
     // classParents: class/interface name → its declared base-class names, from raw
@@ -65,8 +49,12 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
     for (const e of rawEdges) {
         if (e.relation !== "extends" || !e.name)
             continue;
-        const post = e.source.slice(e.source.indexOf("#") + 1);
-        const ownName = post.split(".").pop();
+        // The declaring class's own bare name — read from its node (keyed by n.name, set
+        // once at mint time) rather than re-derived by slicing e.source, which breaks once
+        // ids can carry a dedup ordinal (A3's `Cache~2`).
+        const ownName = byId.get(e.source)?.name;
+        if (!ownName)
+            continue;
         push(classParents, ownName, e.name);
     }
     const out = [];
@@ -94,27 +82,31 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
             // an unresolved base is usually an external/imported type — keep the name.
             add(e.source, hit?.id ?? e.name, e.relation, hit?.confidence ?? "inferred");
         }
+        else if (e.relation === "references" && e.name && e.specifier) {
+            // A named import gives both halves needed for sound resolution: the module
+            // it came from and the exported name. Resolve inside that file only, so a
+            // same-named symbol elsewhere in the repo cannot become a false edge.
+            const targetFile = resolveImport(e.specifier, e.file, byId);
+            if (!byId.has(targetFile))
+                continue; // external or unresolved module
+            const candidates = perFileName.get(targetFile)?.get(e.name) ?? [];
+            if (candidates.length === 1)
+                add(e.source, candidates[0].id, "references", "extracted");
+        }
         else if (e.relation === "calls") {
-            if (e.viaMember && e.recvType) {
+            if (e.viaMember) {
+                if (!e.recvType)
+                    continue;
                 const hit = resolveTypedMember(e.recvType, e.name, e.file, ownerMethod, classParents);
                 if (hit === "ambiguous")
                     continue; // drop — never guess past an ambiguous owner
                 if (hit)
                     add(e.source, hit.id, "calls", hit.confidence);
-                else if (!BUILTIN_CONTAINER_TYPES.has(e.recvType)) {
-                    // chain exhausted with zero candidates at every level → fall back to the
-                    // existing untyped path (unique bare-name match), unchanged.
-                    const fallback = resolveName(e.name, e.file, ["method"], perFileName, globalName);
-                    if (fallback)
-                        add(e.source, fallback.id, "calls", fallback.confidence);
-                }
-                // else: recvType is a known builtin container (Map/dict/etc) — its methods
-                // are never user-defined repo symbols, so drop rather than wire a bare-name
-                // fallback to an unrelated same-named method.
+                // No owner-qualified match means the call is unresolved. A unique bare
+                // method name is not evidence that this receiver has that method.
                 continue;
             }
-            const kinds = e.viaMember ? ["method"] : ["function"];
-            const hit = resolveName(e.name, e.file, kinds, perFileName, globalName);
+            const hit = resolveName(e.name, e.file, ["function"], perFileName, globalName);
             if (hit)
                 add(e.source, hit.id, "calls", hit.confidence); // drop unresolved calls (too noisy)
         }
@@ -152,8 +144,7 @@ function resolveName(name, file, kinds, perFileName, globalName) {
  *     per the inviolable philosophy we drop and stop rather than guess, and we do
  *     NOT continue up the chain past this level.
  *   - `null` — the whole chain (recvType + ancestors, breadth-first, depth ≤ 3,
- *     cycle-guarded) had zero candidates at every level; caller may fall back to
- *     the untyped bare-name path.
+ *     cycle-guarded) had zero candidates at every level.
  */
 function resolveTypedMember(recvType, name, file, ownerMethod, classParents) {
     const MAX_DEPTH = 3;
@@ -193,7 +184,9 @@ function resolveTypedMember(recvType, name, file, ownerMethod, classParents) {
 function resolveImport(spec, file, byId) {
     if (!spec.startsWith("."))
         return spec;
-    const dir = posix.dirname(file.split(sep).join("/"));
+    // Belt-and-braces: `node.path` is posix by construction (`../util/paths.ts`),
+    // but this also accepts a hand-written or hand-edited graph.
+    const dir = posix.dirname(toPosixPath(file));
     const base = posix.normalize(posix.join(dir, spec));
     const noExt = base.replace(/\.(js|jsx|mjs|cjs|ts|tsx|py)$/, "");
     const candidates = [

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package/dist/graph/scopes.d.ts

@@ -1,6 +1,7 @@
 import type { GraphV1, ScopeV1 } from "./types.js";
-/** Walk the tree (reusing `walkDir`'s skip rules) and find project-marker dirs. */
-export declare function discoverScopes(root: string): ScopeV1[];
+/** Walk the tree (reusing `walkDir`'s skip rules, including the repo's persisted
+ * `--include-dir` override) and find project-marker dirs. */
+export declare function discoverScopes(root: string, repoFiles?: string[]): ScopeV1[];
 /** Nearest-prefix owner. `scopes` MUST be sorted prefix-length desc; "" matches all.
  * Falls back to a synthetic root scope when `scopes` has no explicit "" entry and
  * nothing else matches — every path resolves to some scope. */
@@ -20,6 +21,17 @@ export declare function scopesHereClause(scopes: ScopeV1[]): string;
  * (`""`) matches every path. Used to filter ask's doc/node set for
  * `--in <path-prefix>`. */
 export declare function pathUnderPrefix(path: string, prefix: string): boolean;
+/**
+ * Validate a normalized `--in` prefix against the graph before a query runs. A
+ * prefix matching no indexed node is a caller mistake (typo, wrong sub-project,
+ * or a mid-path fragment where a prefix is required) rather than a legitimate
+ * zero-hit query, so every `--in`-taking command fails loudly and identically
+ * instead of printing empty output the caller has to interpret.
+ *
+ * Pass the prefix through `normalizePathPrefix` first — an un-normalized
+ * `src\gpu` or `src/` will not match anything here.
+ */
+export declare function assertPrefixIndexed(graph: GraphV1, prefix: string): void;
 /** Immediate subdirs of `root` that are themselves git repos (have `.git`).
  * Used by workspace federation (Task 5). */
 export declare function discoverWorkspaceChildren(root: string): string[];

package/dist/graph/scopes.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"scopes.d.ts","sourceRoot":"","sources":["../../src/graph/scopes.ts"],"names":[],"mappings":"AA4BA,OAAO,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAsGnD;6DAC6D;AAC7D,wBAAgB,cAAc,CAC5B,IAAI,EAAE,MAAM,EACZ,SAAS,GAAE,MAAM,EAAkD,GAClE,OAAO,EAAE,CAqIX;AAED;;+DAE+D;AAC/D,wBAAgB,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAMhE;AAED;;+DAE+D;AAC/D,wBAAgB,UAAU,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAEjD;AAED;;;sCAGsC;AACtC,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,CAG1D;AAED;;;;2BAI2B;AAC3B,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAErE;AAED;;;;;;;;;GASG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAKxE;AAED;4CAC4C;AAC5C,wBAAgB,yBAAyB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,CAYhE;AAED;;2EAE2E;AAC3E,wBAAgB,aAAa,CAAC,KAAK,EAAE,OAAO,GAAG,OAAO,EAAE,CAEvD"}