@nanonets/graft 0.8.2 → 0.9.1

package/dist/context/build.js.map

@@ -1 +1 @@
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package/dist/context/check.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/context/check.ts"],"names":[],"mappings":"AAqBA,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,OAAO,CAAC;IACZ,+DAA+D;IAC/D,OAAO,EAAE,OAAO,CAAC;IACjB,YAAY,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAChE,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,EAAE,CAAC;CACtB;AAED,MAAM,WAAW,YAAY;IAC3B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,WAAW,CAsE9E;AAED;mCACmC;AACnC,MAAM,WAAW,eAAe;IAC9B,wDAAwD;IACxD,OAAO,EAAE,MAAM,CAAC;IAChB,gDAAgD;IAChD,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;;;;GAOG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,eAAe,GAAG,IAAI,CAU3F;AAED;;wDAEwD;AACxD,wBAAgB,WAAW,CAAC,CAAC,EAAE,eAAe,GAAG,IAAI,GAAG,MAAM,GAAG,IAAI,CAOpE;AAED,wDAAwD;AACxD,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,WAAW,GAAG,MAAM,CAyBxD"}
+{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/context/check.ts"],"names":[],"mappings":"AAwBA,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,OAAO,CAAC;IACZ,+DAA+D;IAC/D,OAAO,EAAE,OAAO,CAAC;IACjB,YAAY,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAChE,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,EAAE,CAAC;CACtB;AAED,MAAM,WAAW,YAAY;IAC3B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,WAAW,CA2E9E;AAED;mCACmC;AACnC,MAAM,WAAW,eAAe;IAC9B,wDAAwD;IACxD,OAAO,EAAE,MAAM,CAAC;IAChB,gDAAgD;IAChD,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;;;;GAOG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,eAAe,GAAG,IAAI,CAU3F;AAED;;wDAEwD;AACxD,wBAAgB,WAAW,CAAC,CAAC,EAAE,eAAe,GAAG,IAAI,GAAG,MAAM,GAAG,IAAI,CAOpE;AAED,wDAAwD;AACxD,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,WAAW,GAAG,MAAM,CAyBxD"}

package/dist/context/check.js

@@ -12,10 +12,13 @@
  *   coverage    a code file exists that no node was built from (new/uningested)
  *   index       a node's frontmatter disagrees with the manifest (hand-edited)
  */
-import { existsSync, readFileSync } from "node:fs";
-import { relative, resolve } from "node:path";
+import { existsSync } from "node:fs";
+import { resolve } from "node:path";
 import { walkDir } from "../ingest/fs.js";
 import { contentHash } from "../util/id.js";
+import { relPosix } from "../util/paths.js";
+import { readSourceFile } from "../util/source.js";
+import { readIncludeDirs } from "../util/state.js";
 import { CODE_EXTENSIONS } from "./build.js";
 import { contextDirFor, readManifest, readNodes } from "./node-file.js";
 export function checkContext(dir, opts = {}) {
@@ -35,15 +38,21 @@ export function checkContext(dir, opts = {}) {
         result.missing = true;
         return result;
     }
-    // Current code files on disk (same rules `init` used).
+    // Current code files on disk (same rules `init` used) — including root's
+    // persisted `--include-dir` override, so this freshness check never
+    // disagrees with buildContext about what "current" means (an included
+    // build/ must not silently vanish from one side and not the other).
     const current = new Map(); // rel → hash
-    for (const file of walkDir(root)) {
+    for (const file of walkDir(root, readIncludeDirs(root))) {
         if (file.startsWith(outDir))
             continue;
         if (!exts.some((e) => file.toLowerCase().endsWith(e)))
             continue;
         try {
-            current.set(relative(root, file), contentHash(readFileSync(file, "utf8")));
+            const source = readSourceFile(file);
+            if (source === null)
+                continue; // unsupported encoding (e.g. UTF-16BE) → treat as removed below
+            current.set(relPosix(root, file), contentHash(source));
         }
         catch {
             // Unreadable now → treat as removed below (it won't be in `current`).

package/dist/context/check.js.map

@@ -1 +1 @@
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package/dist/context/node-file.d.ts.map

@@ -1 +1 @@
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package/dist/context/node-file.js

@@ -22,9 +22,10 @@
  * LLM and without re-reading every node body.
  */
 import { readFileSync, writeFileSync, mkdirSync, existsSync, readdirSync, rmSync } from "node:fs";
-import { join, relative, sep } from "node:path";
+import { join } from "node:path";
 import matter from "gray-matter";
 import { contentHash, normalizeName } from "../util/id.js";
+import { relPosix, stripTrailingSlashes } from "../util/paths.js";
 // Value-only import of a constant; `write.ts` pulls in nothing from here, so no cycle.
 import { GRAPH_DIR } from "../graph/write.js";
 export const MANIFEST_VERSION = 1;
@@ -56,21 +57,6 @@ export function contextDirFor(root, override) {
         return override;
     return join(root, "graft");
 }
-/**
- * Trailing `/` off a repo-relative dir path, in linear time.
- *
- * The obvious `replace(/\/+$/, "")` is a polynomial-ReDoS shape — `\/+$` can begin
- * matching at any point inside a run of slashes, so a path ending in many slashes
- * and then anything else costs O(n²). CodeQL flags it (`js/polynomial-redos`), and
- * rightly: the input here is a `--dir` value, so it is not attacker-controlled, but
- * the ambiguity buys nothing and a loop is both faster and plainer.
- */
-function stripTrailingSlashes(path) {
-    let end = path.length;
-    while (end > 0 && path[end - 1] === "/")
-        end--;
-    return path.slice(0, end);
-}
 /**
  * Make sure the repo's root `.gitignore` ignores the graft output dir. The
  * graph is a local, regenerable cache (like `node_modules`), not a committed
@@ -81,7 +67,7 @@ function stripTrailingSlashes(path) {
  * must never abort a build, so write failures are swallowed.
  */
 export function ensureGitignored(root, contextDir) {
-    const rel = relative(root, contextDir).split(sep).join("/");
+    const rel = relPosix(root, contextDir);
     if (rel === "" || rel.startsWith(".."))
         return; // dir is at/above the repo root — nothing sane to ignore
     const entry = `${stripTrailingSlashes(rel)}/`;
@@ -125,7 +111,7 @@ export function ensureGitignored(root, contextDir) {
  * must not fail over a convenience file.
  */
 export function ensureSearchable(root, contextDir) {
-    const rel = relative(root, contextDir).split(sep).join("/");
+    const rel = relPosix(root, contextDir);
     if (rel === "" || rel.startsWith(".."))
         return; // outside the repo — nothing to re-admit
     const dir = stripTrailingSlashes(rel);

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package/dist/context/savings.d.ts

@@ -10,7 +10,7 @@
  *
  * `graft ask` keeps its own footer (it carries an escalation nudge and feeds
  * the session saved-token counter); everything else — skeleton, grep, callers,
- * map — routes through {@link savingsFor} + {@link savingsFooter} here.
+ * map — routes through {@link savingsFor} + {@link withSavings} here.
  */
 import type { GraphV1 } from '../graph/types.js';
 export interface Savings {
@@ -31,10 +31,19 @@ export declare function savingsFor(graph: GraphV1, paths: Iterable<string>): Sav
  * pattern so the PostToolUse accumulator that parses these footers never
  * mistakes the nudge (or its example) for a second number to count. */
 export declare const SAVINGS_TURN_NUDGE: string;
-/** The one-line footer a command appends to its text output, so the agent gets
+/** The one-line savings estimate for a command's text output, so the agent gets
  * the number for free — no extra tool call. `body` is the exact rendered output
  * the agent reads (the pack). Returns "" when there's nothing honest to claim:
  * no baseline, or the output isn't actually smaller than reading the files
  * (tiny files, where the pointers cost more than the source). */
-export declare function savingsFooter(body: string, saved: Savings | undefined): string;
+export declare function savingsLine(body: string, saved: Savings | undefined): string;
+/** Render `body` with the savings line on TOP.
+ *
+ * Deliberately a header, not a footer: agents routinely pipe graft through
+ * `head -N` (and hosts truncate long tool output from the end), which silently
+ * ate the number and, with it, the PostToolUse accumulator that feeds the
+ * statusline's `~N tok saved`. Every clipper keeps the head, so the number
+ * survives. Emitted once — a second copy at the bottom would be double-counted
+ * by that accumulator's `matchAll`. */
+export declare function withSavings(body: string, saved: Savings | undefined): string;
 //# sourceMappingURL=savings.d.ts.map

package/dist/context/savings.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"savings.d.ts","sourceRoot":"","sources":["../../src/context/savings.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,mBAAmB,CAAC;AAEjD,MAAM,WAAW,OAAO;IACtB,iDAAiD;IACjD,KAAK,EAAE,MAAM,CAAC;IACd,+DAA+D;IAC/D,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,qFAAqF;AACrF,wBAAgB,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAE9C;AAYD;;yDAEyD;AACzD,wBAAgB,UAAU,CAAC,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ,CAAC,MAAM,CAAC,GAAG,OAAO,GAAG,SAAS,CAWvF;AAED;;;;uEAIuE;AACvE,eAAO,MAAM,kBAAkB,QAEmE,CAAC;AAEnG;;;;iEAIiE;AACjE,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,GAAG,SAAS,GAAG,MAAM,CAa9E"}
+{"version":3,"file":"savings.d.ts","sourceRoot":"","sources":["../../src/context/savings.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AACH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,mBAAmB,CAAC;AAEjD,MAAM,WAAW,OAAO;IACtB,iDAAiD;IACjD,KAAK,EAAE,MAAM,CAAC;IACd,+DAA+D;IAC/D,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,qFAAqF;AACrF,wBAAgB,QAAQ,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAE9C;AAYD;;yDAEyD;AACzD,wBAAgB,UAAU,CAAC,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ,CAAC,MAAM,CAAC,GAAG,OAAO,GAAG,SAAS,CAWvF;AAED;;;;uEAIuE;AACvE,eAAO,MAAM,kBAAkB,QAEmE,CAAC;AAEnG;;;;iEAIiE;AACjE,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,GAAG,SAAS,GAAG,MAAM,CAa5E;AAED;;;;;;;uCAOuC;AACvC,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,GAAG,SAAS,GAAG,MAAM,CAG5E"}

package/dist/context/savings.js

@@ -35,12 +35,12 @@ export function savingsFor(graph, paths) {
  * mistakes the nudge (or its example) for a second number to count. */
 export const SAVINGS_TURN_NUDGE = ' At the end of your reply, tell the user the total graft tokens saved this ' +
     'turn — sum each such line across your graft calls — e.g. "🌱 graft saved ~N tokens this turn".';
-/** The one-line footer a command appends to its text output, so the agent gets
+/** The one-line savings estimate for a command's text output, so the agent gets
  * the number for free — no extra tool call. `body` is the exact rendered output
  * the agent reads (the pack). Returns "" when there's nothing honest to claim:
  * no baseline, or the output isn't actually smaller than reading the files
  * (tiny files, where the pointers cost more than the source). */
-export function savingsFooter(body, saved) {
+export function savingsLine(body, saved) {
     if (!saved || saved.baselineChars <= 0)
         return '';
     const pack = toTokens(body.length);
@@ -49,9 +49,21 @@ export function savingsFooter(body, saved) {
         return '';
     const delta = base - pack;
     const pct = Math.round((delta / base) * 100);
-    return (`\n\n[graft] tokens saved ≈ ${delta.toLocaleString()} (${pct}%) — this output ≈ ` +
+    return (`[graft] tokens saved ≈ ${delta.toLocaleString()} (${pct}%) — this output ≈ ` +
         `${pack.toLocaleString()} tok vs reading the ${saved.files} file(s) it covers whole ≈ ` +
         `${base.toLocaleString()} tok (estimate).` +
         SAVINGS_TURN_NUDGE);
 }
+/** Render `body` with the savings line on TOP.
+ *
+ * Deliberately a header, not a footer: agents routinely pipe graft through
+ * `head -N` (and hosts truncate long tool output from the end), which silently
+ * ate the number and, with it, the PostToolUse accumulator that feeds the
+ * statusline's `~N tok saved`. Every clipper keeps the head, so the number
+ * survives. Emitted once — a second copy at the bottom would be double-counted
+ * by that accumulator's `matchAll`. */
+export function withSavings(body, saved) {
+    const line = savingsLine(body, saved);
+    return line ? `${line}\n\n${body}` : body;
+}
 //# sourceMappingURL=savings.js.map

package/dist/context/savings.js.map

@@ -1 +1 @@
-{"version":3,"file":"savings.js","sourceRoot":"","sources":["../../src/context/savings.ts"],"names":[],"mappings":"AAuBA,qFAAqF;AACrF,MAAM,UAAU,QAAQ,CAAC,KAAa;IACpC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;AAC/B,CAAC;AAED;;8BAE8B;AAC9B,SAAS,SAAS,CAAC,KAAc;IAC/B,MAAM,CAAC,GAAG,IAAI,GAAG,EAAkB,CAAC;IACpC,KAAK,MAAM,CAAC,IAAI,KAAK,CAAC,KAAK;QACzB,IAAI,CAAC,CAAC,IAAI,KAAK,MAAM,IAAI,OAAO,CAAC,CAAC,KAAK,KAAK,QAAQ;YAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC;IAC/E,OAAO,CAAC,CAAC;AACX,CAAC;AAED;;yDAEyD;AACzD,MAAM,UAAU,UAAU,CAAC,KAAc,EAAE,KAAuB;IAChE,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC;IAC/B,IAAI,aAAa,GAAG,CAAC,CAAC;IACtB,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,KAAK,MAAM,CAAC,IAAI,IAAI,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC;QAC/B,MAAM,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;QACvB,IAAI,CAAC,KAAK,SAAS;YAAE,SAAS;QAC9B,aAAa,IAAI,CAAC,CAAC;QACnB,KAAK,EAAE,CAAC;IACV,CAAC;IACD,OAAO,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,aAAa,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC;AAC1D,CAAC;AAED;;;;uEAIuE;AACvE,MAAM,CAAC,MAAM,kBAAkB,GAC7B,6EAA6E;IAC7E,gGAAgG,CAAC;AAEnG;;;;iEAIiE;AACjE,MAAM,UAAU,aAAa,CAAC,IAAY,EAAE,KAA0B;IACpE,IAAI,CAAC,KAAK,IAAI,KAAK,CAAC,aAAa,IAAI,CAAC;QAAE,OAAO,EAAE,CAAC;IAClD,MAAM,IAAI,GAAG,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IACnC,MAAM,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;IAC3C,IAAI,IAAI,IAAI,IAAI;QAAE,OAAO,EAAE,CAAC;IAC5B,MAAM,KAAK,GAAG,IAAI,GAAG,IAAI,CAAC;IAC1B,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,GAAG,CAAC,CAAC;IAC7C,OAAO,CACL,8BAA8B,KAAK,CAAC,cAAc,EAAE,KAAK,GAAG,qBAAqB;QACjF,GAAG,IAAI,CAAC,cAAc,EAAE,uBAAuB,KAAK,CAAC,KAAK,6BAA6B;QACvF,GAAG,IAAI,CAAC,cAAc,EAAE,kBAAkB;QAC1C,kBAAkB,CACnB,CAAC;AACJ,CAAC"}
+{"version":3,"file":"savings.js","sourceRoot":"","sources":["../../src/context/savings.ts"],"names":[],"mappings":"AAuBA,qFAAqF;AACrF,MAAM,UAAU,QAAQ,CAAC,KAAa;IACpC,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;AAC/B,CAAC;AAED;;8BAE8B;AAC9B,SAAS,SAAS,CAAC,KAAc;IAC/B,MAAM,CAAC,GAAG,IAAI,GAAG,EAAkB,CAAC;IACpC,KAAK,MAAM,CAAC,IAAI,KAAK,CAAC,KAAK;QACzB,IAAI,CAAC,CAAC,IAAI,KAAK,MAAM,IAAI,OAAO,CAAC,CAAC,KAAK,KAAK,QAAQ;YAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC;IAC/E,OAAO,CAAC,CAAC;AACX,CAAC;AAED;;yDAEyD;AACzD,MAAM,UAAU,UAAU,CAAC,KAAc,EAAE,KAAuB;IAChE,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC;IAC/B,IAAI,aAAa,GAAG,CAAC,CAAC;IACtB,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,KAAK,MAAM,CAAC,IAAI,IAAI,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC;QAC/B,MAAM,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;QACvB,IAAI,CAAC,KAAK,SAAS;YAAE,SAAS;QAC9B,aAAa,IAAI,CAAC,CAAC;QACnB,KAAK,EAAE,CAAC;IACV,CAAC;IACD,OAAO,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,aAAa,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC;AAC1D,CAAC;AAED;;;;uEAIuE;AACvE,MAAM,CAAC,MAAM,kBAAkB,GAC7B,6EAA6E;IAC7E,gGAAgG,CAAC;AAEnG;;;;iEAIiE;AACjE,MAAM,UAAU,WAAW,CAAC,IAAY,EAAE,KAA0B;IAClE,IAAI,CAAC,KAAK,IAAI,KAAK,CAAC,aAAa,IAAI,CAAC;QAAE,OAAO,EAAE,CAAC;IAClD,MAAM,IAAI,GAAG,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IACnC,MAAM,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;IAC3C,IAAI,IAAI,IAAI,IAAI;QAAE,OAAO,EAAE,CAAC;IAC5B,MAAM,KAAK,GAAG,IAAI,GAAG,IAAI,CAAC;IAC1B,MAAM,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,GAAG,IAAI,CAAC,GAAG,GAAG,CAAC,CAAC;IAC7C,OAAO,CACL,0BAA0B,KAAK,CAAC,cAAc,EAAE,KAAK,GAAG,qBAAqB;QAC7E,GAAG,IAAI,CAAC,cAAc,EAAE,uBAAuB,KAAK,CAAC,KAAK,6BAA6B;QACvF,GAAG,IAAI,CAAC,cAAc,EAAE,kBAAkB;QAC1C,kBAAkB,CACnB,CAAC;AACJ,CAAC;AAED;;;;;;;uCAOuC;AACvC,MAAM,UAAU,WAAW,CAAC,IAAY,EAAE,KAA0B;IAClE,MAAM,IAAI,GAAG,WAAW,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;IACtC,OAAO,IAAI,CAAC,CAAC,CAAC,GAAG,IAAI,OAAO,IAAI,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;AAC5C,CAAC"}

package/dist/graph/build.d.ts

@@ -34,6 +34,9 @@ export interface GraphBuildResult {
     parsed: number;
     /** Files replayed from the extraction cache. */
     reused: number;
+    /** The parent checkout this build copied a starting graph from, when it was run in
+     * a git worktree that had none of its own. See `./seed.ts`. */
+    seededFrom?: string;
     nodes: number;
     edges: number;
     byKind: Record<Kind, number>;

package/dist/graph/build.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"build.d.ts","sourceRoot":"","sources":["../../src/graph/build.ts"],"names":[],"mappings":"AA8BA,OAAO,EAAe,KAAK,WAAW,EAAE,MAAM,aAAa,CAAC;AAK5D,OAAO,KAAK,EAAW,IAAI,EAAU,QAAQ,EAAW,MAAM,YAAY,CAAC;AAC3E,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAEpD,OAAO,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAC;AA2BpD,MAAM,WAAW,iBAAiB;IAChC,4DAA4D;IAC5D,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB;sEACkE;IAClE,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB;;;sFAGkF;IAClF,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,wFAAwF;IACxF,UAAU,CAAC,EAAE,cAAc,CAAC;IAC5B,yFAAyF;IACzF,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE;QAClB,KAAK,EAAE,OAAO,GAAG,QAAQ,CAAC;QAC1B,KAAK,EAAE,MAAM,CAAC;QACd,KAAK,EAAE,MAAM,CAAC;QACd,IAAI,EAAE,MAAM,CAAC;KACd,KAAK,IAAI,CAAC;CACZ;AAED,MAAM,WAAW,gBAAgB;IAC/B,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,8DAA8D;IAC9D,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,mFAAmF;IACnF,MAAM,EAAE,MAAM,CAAC;IACf,gDAAgD;IAChD,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IAC7B,UAAU,EAAE,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;IACrC,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,OAAO,EAAE,WAAW,CAAC;IACrB,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAsBD,wBAAsB,UAAU,CAC9B,GAAG,EAAE,MAAM,EACX,IAAI,GAAE,iBAAsB,GAC3B,OAAO,CAAC,gBAAgB,CAAC,CA4L3B"}
+{"version":3,"file":"build.d.ts","sourceRoot":"","sources":["../../src/graph/build.ts"],"names":[],"mappings":"AAkCA,OAAO,EAAe,KAAK,WAAW,EAAE,MAAM,aAAa,CAAC;AAK5D,OAAO,KAAK,EAAW,IAAI,EAAU,QAAQ,EAAW,MAAM,YAAY,CAAC;AAC3E,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAEpD,OAAO,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAC;AA2BpD,MAAM,WAAW,iBAAiB;IAChC,4DAA4D;IAC5D,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB;sEACkE;IAClE,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB;;;sFAGkF;IAClF,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,wFAAwF;IACxF,UAAU,CAAC,EAAE,cAAc,CAAC;IAC5B,yFAAyF;IACzF,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE;QAClB,KAAK,EAAE,OAAO,GAAG,QAAQ,CAAC;QAC1B,KAAK,EAAE,MAAM,CAAC;QACd,KAAK,EAAE,MAAM,CAAC;QACd,IAAI,EAAE,MAAM,CAAC;KACd,KAAK,IAAI,CAAC;CACZ;AAED,MAAM,WAAW,gBAAgB;IAC/B,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,8DAA8D;IAC9D,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,mFAAmF;IACnF,MAAM,EAAE,MAAM,CAAC;IACf,gDAAgD;IAChD,MAAM,EAAE,MAAM,CAAC;IACf;mEAC+D;IAC/D,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IAC7B,UAAU,EAAE,MAAM,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;IACrC,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,OAAO,EAAE,WAAW,CAAC;IACrB,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AA2BD,wBAAsB,UAAU,CAC9B,GAAG,EAAE,MAAM,EACX,IAAI,GAAE,iBAAsB,GAC3B,OAAO,CAAC,gBAAgB,CAAC,CAkN3B"}

package/dist/graph/build.js

@@ -14,13 +14,17 @@
  * one — the invariant `test/graph-incremental.test.ts` pins down.
  */
 import { readFileSync } from "node:fs";
-import { basename, dirname, relative, resolve, sep } from "node:path";
+import { basename, dirname, resolve } from "node:path";
 import { walkDir } from "../ingest/fs.js";
 import { contextDirFor, ensureGitignored, ensureSearchable } from "../context/node-file.js";
-import { extractFile, languageOf } from "./extract.js";
+import { extractFile, languageLabelOf, languageOf } from "./extract.js";
 import { contentHash } from "../util/id.js";
+import { relPosix } from "../util/paths.js";
+import { readSourceFile } from "../util/source.js";
+import { readIncludeDirs } from "../util/state.js";
 import { emptyExtractCache, readExtractCache, writeExtractCache, } from "./extract-cache.js";
 import { writeFingerprint } from "./fingerprint.js";
+import { seedGraph } from "./seed.js";
 import { listSourceStats } from "./source-files.js";
 import { resolveEdges } from "./resolve.js";
 import { enrichGraph } from "./enrich.js";
@@ -59,17 +63,22 @@ function applyMinSubstanceGuard(scopes, nodes) {
 /** Every Go module in the repo: each `go.mod`'s declared `module` path and the repo
  * directory it lives in (posix, `.` for the root). Found anywhere in the tree, so a
  * monorepo whose module is in a subdir (e.g. `backend/go.mod`) resolves too. Lets edge
- * resolution map Go import paths to in-repo files. */
-function readGoModules(root) {
+ * resolution map Go import paths to in-repo files.
+ *
+ * `repoFiles` is buildGraph's single enumeration, which already carries root's
+ * persisted `--include-dir` override — so a `go.mod` living under an included
+ * dir (e.g. `build/go.mod`) is found here exactly when its `.go` files are
+ * indexed, and its intra-module imports resolve. */
+function readGoModules(root, repoFiles) {
     const mods = [];
-    for (const f of walkDir(root)) {
+    for (const f of repoFiles) {
         if (basename(f) !== "go.mod")
             continue;
         try {
             const m = readFileSync(f, "utf8").match(/^\s*module\s+(\S+)/m);
             if (!m)
                 continue;
-            const rel = relative(root, dirname(f)).split(sep).join("/");
+            const rel = relPosix(root, dirname(f));
             mods.push({ module: m[1], dir: rel === "" ? "." : rel });
         }
         catch {
@@ -81,13 +90,25 @@ function readGoModules(root) {
 export async function buildGraph(dir, opts = {}) {
     const root = resolve(dir);
     const outDir = contextDirFor(root, opts.contextDir);
-    const files = listSourceStats(root, outDir);
-    const discoveredScopes = discoverScopes(root);
+    // Enumerate once: source extraction, scope discovery, and Go module
+    // resolution must agree on the same Git-ignore-aware working-tree view —
+    // including the repo's persisted `--include-dir` override.
+    const repoFiles = walkDir(root, readIncludeDirs(root));
+    const files = listSourceStats(root, outDir, repoFiles);
+    const discoveredScopes = discoverScopes(root, repoFiles);
     const nodes = [];
     const rawEdges = [];
     const sources = new Map();
+    /** Display labels, not grammars — `.mjs` is parsed as typescript but reported as
+     * javascript, or the banner claims a repo's JavaScript went unindexed. */
     const langs = new Set();
     const errors = [];
+    // In a git worktree there is nothing to reuse *yet* — `graft/` is gitignored, so
+    // git never checked it out — but the parent checkout's graph is one directory away.
+    // Copy it in before reading the priors below and this build is incremental and
+    // keeps its paid-for summaries, instead of being a cold parse of the whole repo.
+    // No-ops everywhere else, including on an explicit cold build (`reuse: false`).
+    const seed = opts.reuse === false ? { seeded: false } : seedGraph(root, { contextDir: opts.contextDir });
     // Tier-1 memo: unchanged files replay their last parse. `entries` is rebuilt
     // from scratch each run and keyed only by files currently on disk, so deletions
     // fall out of both the cache and the fingerprint with no separate pruning pass.
@@ -99,6 +120,7 @@ export async function buildGraph(dir, opts = {}) {
         const rel = f.rel;
         opts.onProgress?.({ phase: "parse", index: i, total: files.length, file: rel });
         const lang = languageOf(f.abs);
+        const label = languageLabelOf(f.abs);
         const cached = priorExtract.files[rel];
         // Every file is read and hashed, every build — only the *parse* is memoized.
         // The tempting optimization is to trust the probe's `(size, mtimeMs)` and skip
@@ -111,7 +133,7 @@ export async function buildGraph(dir, opts = {}) {
         // this still skips.
         let source;
         try {
-            source = readFileSync(f.abs, "utf8");
+            source = readSourceFile(f.abs);
         }
         catch (err) {
             const message = `${rel}: ${err instanceof Error ? err.message : String(err)}`;
@@ -121,6 +143,12 @@ export async function buildGraph(dir, opts = {}) {
             entries[rel] = { size: f.size, mtimeMs: f.mtimeMs, hash: "", nodes: [], rawEdges: [], error: message };
             return;
         }
+        if (source === null) {
+            // Unsupported encoding (UTF-16BE) — a skip, never an error: recorded with
+            // an empty entry so the freshness probe doesn't treat it as new every run.
+            entries[rel] = { size: f.size, mtimeMs: f.mtimeMs, hash: "", nodes: [], rawEdges: [] };
+            return;
+        }
         const hash = contentHash(source);
         if (cached && hash === cached.hash) {
             entries[rel] = { ...cached, size: f.size, mtimeMs: f.mtimeMs };
@@ -132,7 +160,7 @@ export async function buildGraph(dir, opts = {}) {
             }
             nodes.push(...cached.nodes);
             rawEdges.push(...cached.rawEdges);
-            langs.add(lang);
+            langs.add(label);
             return;
         }
         parsed++;
@@ -141,7 +169,7 @@ export async function buildGraph(dir, opts = {}) {
             nodes.push(...fileNodes);
             rawEdges.push(...fileEdges);
             sources.set(rel, source);
-            langs.add(lang);
+            langs.add(label);
             entries[rel] = { size: f.size, mtimeMs: f.mtimeMs, hash, nodes: fileNodes, rawEdges: fileEdges };
         }
         catch (err) {
@@ -160,7 +188,7 @@ export async function buildGraph(dir, opts = {}) {
         ...emptyExtractCache(),
         files: entries,
     });
-    const edges = resolveEdges(nodes, rawEdges, { goModules: readGoModules(root) });
+    const edges = resolveEdges(nodes, rawEdges, { goModules: readGoModules(root, repoFiles) });
     // graph.json is its own Tier-2 cache: fold in the prior meaning layer so an
     // unchanged body is never re-summarized (and a Tier-1-only run never wipes it).
     const prior = readGraph(wiringPath(outDir));
@@ -246,6 +274,7 @@ export async function buildGraph(dir, opts = {}) {
         files: files.length,
         parsed,
         reused,
+        seededFrom: seed.from,
         nodes: nodes.length,
         edges: edges.length,
         byKind,

package/dist/graph/build.js.map

@@ -1 +1 @@
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package/dist/graph/cards.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cards.d.ts","sourceRoot":"","sources":["../../src/graph/cards.ts"],"names":[],"mappings":"AAmBA,OAAO,KAAK,EAAE,OAAO,EAAU,MAAM,YAAY,CAAC;AAMlD,MAAM,WAAW,YAAY;IAC3B,yEAAyE;IACzE,IAAI,EAAE,MAAM,CAAC;IACb,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,SAAS;IACxB,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,YAAY,EAAE,CAAC;CACvB;AA4GD;;;GAGG;AACH,wBAAgB,UAAU,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,SAAS,CAiCpE;AAED;;;GAGG;AACH,wBAAgB,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,GAAG,IAAI,CAyCtE;AAED,iFAAiF;AACjF,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,2EAA2E;IAC3E,EAAE,EAAE,MAAM,CAAC;CACZ;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAoClE"}
+{"version":3,"file":"cards.d.ts","sourceRoot":"","sources":["../../src/graph/cards.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAAE,OAAO,EAAU,MAAM,YAAY,CAAC;AAMlD,MAAM,WAAW,YAAY;IAC3B,yEAAyE;IACzE,IAAI,EAAE,MAAM,CAAC;IACb,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,SAAS;IACxB,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,YAAY,EAAE,CAAC;CACvB;AA4GD;;;GAGG;AACH,wBAAgB,UAAU,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,SAAS,CAiCpE;AAED;;;GAGG;AACH,wBAAgB,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,GAAG,IAAI,CAyCtE;AAED,iFAAiF;AACjF,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,2EAA2E;IAC3E,EAAE,EAAE,MAAM,CAAC;CACZ;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAoClE"}

package/dist/graph/cards.js

@@ -15,7 +15,8 @@
  * `signature`, so cards are useful even in a $0 structure-only build.
  */
 import { mkdirSync, writeFileSync, readFileSync, existsSync, readdirSync, rmSync } from "node:fs";
-import { dirname, join, relative } from "node:path";
+import { dirname, join } from "node:path";
+import { relPosix } from "../util/paths.js";
 import matter from "gray-matter";
 import { CACHE_DIR, readNodes } from "../context/node-file.js";
 import { GRAPH_DIR } from "./write.js";
@@ -140,7 +141,7 @@ export function writeCards(graph, outDir) {
         mkdirSync(dirname(cardPath), { recursive: true });
         writeFileSync(cardPath, renderCard(sourcePath, fileNode, symbols, concepts.get(sourcePath) ?? []));
         written.add(cardPath);
-        files.push({ card: relative(outDir, cardPath), path: sourcePath, symbols: symbols.length });
+        files.push({ card: relPosix(outDir, cardPath), path: sourcePath, symbols: symbols.length });
     }
     let pruned = 0;
     for (const existing of listExistingCards(outDir)) {

package/dist/graph/cards.js.map

@@ -1 +1 @@
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