@nanonets/graft 0.10.0 → 0.12.0

package/dist/graph/queries/clojure.scm

@@ -0,0 +1,58 @@
+; Clojure's tree-sitter grammar has no dedicated node types for `defn`/`def`/etc
+; — every form, definition or call alike, is just a `list_lit` whose `value`
+; field lists its children positionally. So a "definition" here is a list whose
+; first symbol is a known defining macro, matched by name via `#any-of?`/`#eq?`,
+; with the second symbol captured as the defined name.
+
+; Definitions
+
+; * namespace
+(list_lit
+  .
+  value: (sym_lit name: (sym_name) @ignore)
+  .
+  value: (sym_lit name: (sym_name) @name)
+  (#eq? @ignore "ns")) @definition.module
+
+; * functions/macros/multimethods
+(list_lit
+  .
+  value: (sym_lit name: (sym_name) @ignore)
+  .
+  value: (sym_lit name: (sym_name) @name)
+  (#any-of? @ignore "defn" "defn-" "defmacro" "defmulti" "defmethod" "definline" "deftest")) @definition.function
+
+; * def / defonce — a Var binding, not necessarily a function
+(list_lit
+  .
+  value: (sym_lit name: (sym_name) @ignore)
+  .
+  value: (sym_lit name: (sym_name) @name)
+  (#any-of? @ignore "def" "defonce")) @definition.variable
+
+; * defprotocol / definterface
+(list_lit
+  .
+  value: (sym_lit name: (sym_name) @ignore)
+  .
+  value: (sym_lit name: (sym_name) @name)
+  (#any-of? @ignore "defprotocol" "definterface")) @definition.interface
+
+; * defrecord / deftype / defstruct — each mints a JVM class
+(list_lit
+  .
+  value: (sym_lit name: (sym_name) @ignore)
+  .
+  value: (sym_lit name: (sym_name) @name)
+  (#any-of? @ignore "defrecord" "deftype" "defstruct")) @definition.class
+
+; References
+
+; * function/macro call — any parenthesized list headed by a symbol. This also
+; matches the def-forms above on their own keyword (e.g. `(defn foo …)` reads
+; as a "call" to `defn`) and special forms (`let`, `if`, `fn`, …); those never
+; resolve to an in-repo definition, so the existing resolver drops them rather
+; than guessing — same trade-off the elixir/ruby queries make.
+(list_lit
+  .
+  value: (sym_lit name: (sym_name) @name)) @reference.call

package/dist/graph/resolve.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"resolve.d.ts","sourceRoot":"","sources":["../../src/graph/resolve.ts"],"names":[],"mappings":"AAgBA,OAAO,KAAK,EAAE,MAAM,EAAQ,MAAM,EAAY,MAAM,YAAY,CAAC;AACjE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAI5C;;sDAEsD;AACtD,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;CACb;AAED,MAAM,WAAW,cAAc;IAC7B;;6FAEyF;IACzF,SAAS,CAAC,EAAE,QAAQ,EAAE,CAAC;CACxB;AAED,wBAAgB,YAAY,CAC1B,KAAK,EAAE,MAAM,EAAE,EACf,QAAQ,EAAE,OAAO,EAAE,EACnB,IAAI,GAAE,cAAmB,GACxB,MAAM,EAAE,CAiGV"}
+{"version":3,"file":"resolve.d.ts","sourceRoot":"","sources":["../../src/graph/resolve.ts"],"names":[],"mappings":"AAgBA,OAAO,KAAK,EAAE,MAAM,EAAQ,MAAM,EAAY,MAAM,YAAY,CAAC;AACjE,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAM5C;;sDAEsD;AACtD,MAAM,WAAW,QAAQ;IACvB,MAAM,EAAE,MAAM,CAAC;IACf,GAAG,EAAE,MAAM,CAAC;CACb;AAED,MAAM,WAAW,cAAc;IAC7B;;6FAEyF;IACzF,SAAS,CAAC,EAAE,QAAQ,EAAE,CAAC;CACxB;AAED,wBAAgB,YAAY,CAC1B,KAAK,EAAE,MAAM,EAAE,EACf,QAAQ,EAAE,OAAO,EAAE,EACnB,IAAI,GAAE,cAAmB,GACxB,MAAM,EAAE,CAoKV"}

package/dist/graph/resolve.js

@@ -15,6 +15,8 @@
 import { posix } from "node:path";
 import { toPosixPath } from "../util/paths.js";
 const IMPORT_EXTS = [".ts", ".tsx", ".mts", ".cts", ".js", ".jsx", ".mjs", ".cjs", ".py"];
+/** C/C++ source + header extensions, for resolving `#include` targets. */
+const C_EXT = /\.(c|h|cc|cpp|cxx|hpp|hh|hxx|inl|ipp|c\+\+|h\+\+)$/i;
 export function resolveEdges(nodes, rawEdges, opts = {}) {
     const byId = new Map(nodes.map((n) => [n.id, n]));
     const globalName = new Map();
@@ -24,6 +26,23 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
     const ownerMethod = new Map();
     // Go package resolution: dir (posix) → its `.go` file node ids, for import mapping.
     const goFilesByDir = new Map();
+    // Java package resolution: a file's package-path suffix (`com/acme/Foo.java`) → its
+    // file node ids. A Java import names a type by its fully-qualified name, which by
+    // language convention mirrors the directory path under whatever source root the
+    // project uses (`src/main/java/`, `src/`, …) — so the suffix is the portable key.
+    const javaFilesBySuffix = new Map();
+    // C/C++ header resolution: a file's path-suffix (`net/socket.h`, `socket.h`) → its
+    // file node ids, so an `#include` reached through an `-I` dir (not relative to the
+    // including file) still resolves to the in-repo header when the suffix is unique.
+    const cFilesBySuffix = new Map();
+    // Rust crate roots: the directory holding a `lib.rs` or `main.rs`. A `use crate::a::b`
+    // resolves to `<crate root>/a/b.rs` (or `.../a/b/mod.rs`), relative to the crate the
+    // importing file belongs to — so a workspace with several crates stays unambiguous.
+    const rustCrateRoots = [];
+    // PHP class resolution: a file's path-suffix (`Models/User.php`, `User.php`) → its file
+    // node ids. A `use App\Models\User` names a PSR-4 class whose file mirrors the namespace
+    // tail under some (unknown) source root, so the suffix is the portable key.
+    const phpFilesBySuffix = new Map();
     const hasGoModules = !!opts.goModules?.length;
     for (const n of nodes) {
         if (n.kind === "file") {
@@ -31,6 +50,31 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
                 const dir = posix.dirname(toPosixPath(n.path));
                 push(goFilesByDir, dir, n.id);
             }
+            if (n.path.endsWith(".java")) {
+                // Index every directory-boundary suffix, since the source root is unknown:
+                // `src/main/java/com/acme/Foo.java` is reachable as `com/acme/Foo.java`,
+                // `acme/Foo.java`, and so on. The import's own FQN picks the right depth.
+                const parts = toPosixPath(n.path).split("/");
+                for (let i = 0; i < parts.length; i++)
+                    push(javaFilesBySuffix, parts.slice(i).join("/"), n.id);
+            }
+            if (C_EXT.test(n.path)) {
+                const parts = toPosixPath(n.path).split("/");
+                for (let i = 0; i < parts.length; i++)
+                    push(cFilesBySuffix, parts.slice(i).join("/"), n.id);
+            }
+            if (n.path.endsWith(".php")) {
+                const parts = toPosixPath(n.path).split("/");
+                for (let i = 0; i < parts.length; i++)
+                    push(phpFilesBySuffix, parts.slice(i).join("/"), n.id);
+            }
+            {
+                const p = toPosixPath(n.path);
+                if (p === "lib.rs" || p === "main.rs")
+                    rustCrateRoots.push("");
+                else if (p.endsWith("/lib.rs") || p.endsWith("/main.rs"))
+                    rustCrateRoots.push(posix.dirname(p));
+            }
             continue;
         }
         push(globalName, n.name, n);
@@ -73,31 +117,54 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
         else if (e.relation === "imports" && e.specifier) {
             const target = hasGoModules && e.file.endsWith(".go")
                 ? resolveGoImport(e.specifier, opts.goModules, goFilesByDir)
-                : resolveImport(e.specifier, e.file, byId);
+                : e.file.endsWith(".java")
+                    ? resolveJavaImport(e.specifier, javaFilesBySuffix)
+                    : C_EXT.test(e.file)
+                        ? resolveCInclude(e.specifier, e.file, byId, cFilesBySuffix)
+                        : e.file.endsWith(".rs")
+                            ? resolveRustUse(e.specifier, e.file, byId, rustCrateRoots)
+                            : e.file.endsWith(".php")
+                                ? resolvePhpUse(e.specifier, phpFilesBySuffix)
+                                : resolveImport(e.specifier, e.file, byId);
             add(e.source, target, "imports", "extracted");
         }
         else if (e.relation === "extends" || e.relation === "implements") {
-            const kinds = e.relation === "implements" ? ["interface"] : ["class", "interface"];
+            // `implements` also resolves to a `trait` — PHP models trait composition
+            // (`use SomeTrait;`) as an implements edge, and a trait is a valid target.
+            const kinds = e.relation === "implements" ? ["interface", "trait"] : ["class", "interface"];
             const hit = resolveName(e.name, e.file, kinds, perFileName, globalName);
             // an unresolved base is usually an external/imported type — keep the name.
             add(e.source, hit?.id ?? e.name, e.relation, hit?.confidence ?? "inferred");
         }
-        else if (e.relation === "references" && e.name && e.specifier) {
-            // A named import gives both halves needed for sound resolution: the module
-            // it came from and the exported name. Resolve inside that file only, so a
-            // same-named symbol elsewhere in the repo cannot become a false edge.
-            const targetFile = resolveImport(e.specifier, e.file, byId);
-            if (!byId.has(targetFile))
-                continue; // external or unresolved module
-            const candidates = perFileName.get(targetFile)?.get(e.name) ?? [];
-            if (candidates.length === 1)
-                add(e.source, candidates[0].id, "references", "extracted");
+        else if (e.relation === "references" && e.name) {
+            if (e.specifier) {
+                // A named import gives both halves needed for sound resolution: the module
+                // it came from and the exported name. Resolve inside that file only, so a
+                // same-named symbol elsewhere in the repo cannot become a false edge.
+                const targetFile = resolveImport(e.specifier, e.file, byId);
+                if (!byId.has(targetFile))
+                    continue; // external or unresolved module
+                const candidates = perFileName.get(targetFile)?.get(e.name) ?? [];
+                if (candidates.length === 1)
+                    add(e.source, candidates[0].id, "references", "extracted");
+            }
+            else if (byId.get(e.source)?.origin === "generic") {
+                // Breadth tier: a bare-name structural reference (extends / implements /
+                // object-creation / module alias) the grammar marked but cannot type. Resolve
+                // to a type-like definition, drop-rather-than-guess, never a self-loop. Gated on
+                // generic origin so depth-tier references (which always carry a specifier) are
+                // provably untouched.
+                const refKinds = ["class", "interface", "struct", "enum", "type", "module"];
+                const hit = resolveName(e.name, e.file, refKinds, perFileName, globalName);
+                if (hit && hit.id !== e.source)
+                    add(e.source, hit.id, "references", hit.confidence);
+            }
         }
         else if (e.relation === "calls") {
             if (e.viaMember) {
                 if (!e.recvType)
                     continue;
-                const hit = resolveTypedMember(e.recvType, e.name, e.file, ownerMethod, classParents);
+                const hit = resolveTypedMember(e.recvType, e.name, e.file, ownerMethod, classParents, e.argCount);
                 if (hit === "ambiguous")
                     continue; // drop — never guess past an ambiguous owner
                 if (hit)
@@ -108,14 +175,22 @@ export function resolveEdges(nodes, rawEdges, opts = {}) {
                 // vs a compiler-grade oracle) for a 3x count inflation, i.e. noise. See #35.
                 continue;
             }
-            // Depth-tier bare calls are function calls (method calls arrive as viaMember
-            // with a receiver type). The generic breadth tier can't type receivers, so its
-            // tags.scm @reference.call/@reference.send capture ALL calls as bare names —
-            // in method-heavy languages (Java, Ruby, C#) those target methods. Widen the
-            // candidate kinds to methods ONLY for generic-origin sources, so depth-tier
-            // precision is untouched (an ambiguous function-vs-method name still drops).
+            // Three cases, because "a bare call" means something different per tier:
+            //
+            //  - generic (breadth tier): tags.scm captures ALL calls as bare names, since it
+            //    cannot type a receiver. In method-heavy languages those target methods, so
+            //    widen to methods — ONLY here, leaving depth-tier precision untouched (an
+            //    ambiguous function-vs-method name still drops).
+            //  - Java (depth tier): an implicit-`this` call is spelled as a member call in
+            //    extract.ts, so the only bare call reaching here is `new Foo()`, whose target
+            //    is a TYPE. Against the function index every constructor edge would drop.
+            //  - everything else: functions, exactly as before.
             const srcOrigin = byId.get(e.source)?.origin;
-            const callKinds = srcOrigin === "generic" ? ["function", "method"] : ["function"];
+            const callKinds = srcOrigin === "generic"
+                ? ["function", "method"]
+                : e.file.endsWith(".java")
+                    ? ["class", "struct", "enum", "interface"]
+                    : ["function"];
             const hit = resolveName(e.name, e.file, callKinds, perFileName, globalName);
             if (hit)
                 add(e.source, hit.id, "calls", hit.confidence); // drop unresolved calls (too noisy)
@@ -156,15 +231,40 @@ function resolveName(name, file, kinds, perFileName, globalName) {
  *   - `null` — the whole chain (recvType + ancestors, breadth-first, depth ≤ 3,
  *     cycle-guarded) had zero candidates at every level.
  */
-function resolveTypedMember(recvType, name, file, ownerMethod, classParents) {
+/**
+ * Narrow an overload set to the candidates a call of `argCount` arguments could
+ * reach. Only Java emits `argCount`/`arity`, so for every other language this is
+ * the identity function and resolution is byte-for-byte what it was.
+ *
+ * Deliberately conservative in both directions:
+ *   - A variadic candidate (`String... xs`) accepts anything from `arity - 1`
+ *     upward, so it is never filtered out by count.
+ *   - A candidate with no recorded arity (a graph built before this field) is
+ *     kept, since absence of data is not evidence of a mismatch.
+ *   - If narrowing leaves nothing, the ORIGINAL set is returned. An empty result
+ *     would silently drop a real edge; handing the full set back lets the existing
+ *     same-file / "ambiguous" logic make the call exactly as before.
+ */
+function narrowByArity(candidates, argCount) {
+    if (argCount === undefined || candidates.length < 2)
+        return candidates;
+    const fits = candidates.filter((c) => {
+        if (c.arity === undefined)
+            return true;
+        return c.variadic ? argCount >= c.arity - 1 : c.arity === argCount;
+    });
+    return fits.length > 0 ? fits : candidates;
+}
+function resolveTypedMember(recvType, name, file, ownerMethod, classParents, argCount) {
     const MAX_DEPTH = 3;
     const visited = new Set([recvType]);
     let frontier = [recvType];
     for (let depth = 0; depth <= MAX_DEPTH && frontier.length; depth++) {
         for (const type of frontier) {
-            const candidates = ownerMethod.get(`${type}.${name}`);
-            if (!candidates || candidates.length === 0)
+            const all = ownerMethod.get(`${type}.${name}`);
+            if (!all || all.length === 0)
                 continue; // try next ancestor
+            const candidates = narrowByArity(all, argCount);
             if (candidates.length === 1) {
                 const c = candidates[0];
                 return { id: c.id, confidence: c.path === file ? "extracted" : "inferred" };
@@ -209,6 +309,132 @@ function resolveImport(spec, file, byId) {
             return c;
     return spec;
 }
+/**
+ * Resolve a Java import's fully-qualified type name to an in-repo file node;
+ * otherwise return the raw specifier (JDK or third-party type).
+ *
+ * Java names a *type*, not a path, and states no source root — `com.acme.Foo` may
+ * live under `src/main/java/`, `src/`, or a module dir. Matching on the path SUFFIX
+ * (`com/acme/Foo.java`) is therefore root-agnostic and needs no build-file parsing,
+ * which is what keeps this deterministic and dependency-free.
+ *
+ * `import static com.acme.Foo.bar` names a member, so when the full name misses, the
+ * last segment is dropped and the enclosing type retried. A wildcard (`com.acme.*`)
+ * names a package rather than one file and is deliberately left unresolved: picking a
+ * representative would invent an edge the source does not state.
+ *
+ * A suffix shared by two files (the same FQN under two source roots, e.g. a
+ * duplicated test tree) is ambiguous, so it stays unresolved rather than guessing.
+ */
+function resolveJavaImport(spec, filesBySuffix) {
+    const hit = (fqn) => {
+        const suffix = `${fqn.split(".").join("/")}.java`;
+        const files = filesBySuffix.get(suffix);
+        return files && files.length === 1 ? files[0] : null;
+    };
+    const direct = hit(spec);
+    if (direct)
+        return direct;
+    // `import static a.b.C.member` → retry as `a.b.C`.
+    const dot = spec.lastIndexOf(".");
+    if (dot > 0) {
+        const enclosing = hit(spec.slice(0, dot));
+        if (enclosing)
+            return enclosing;
+    }
+    return spec;
+}
+/**
+ * Resolve a C/C++ `#include "path"` to an in-repo file node: relative to the including
+ * file first (the common case, and certain), else a UNIQUE path-suffix match — which
+ * covers a header reached through an `-I` include directory rather than a relative path.
+ * Anything ambiguous or not found stays the raw path (a system or out-of-repo header),
+ * never a guessed edge.
+ */
+function resolveCInclude(spec, file, byId, bySuffix) {
+    const dir = posix.dirname(toPosixPath(file));
+    const relJoin = posix.normalize(posix.join(dir, spec));
+    if (byId.has(relJoin))
+        return relJoin; // relative to the including file — certain
+    const hits = bySuffix.get(spec.replace(/^\.?\//, ""));
+    if (hits && hits.length === 1)
+        return hits[0]; // unique suffix — an -I-reached header
+    return spec; // system/out-of-repo/ambiguous — keep the string, do not guess
+}
+/**
+ * Resolve a PHP `use` fully-qualified name (`App\Models\User`) to the in-repo class file.
+ * PSR-4 maps the namespace to a directory under some (unknown) source root and the class
+ * to a `<Class>.php` file, so we match the longest namespace-tail suffix that names exactly
+ * one file: `App/Models/User.php`, then `Models/User.php`, then `User.php`. The longest
+ * unique match wins; an ambiguous tail or a vendor/out-of-repo class stays the raw name.
+ */
+function resolvePhpUse(fqn, bySuffix) {
+    const parts = fqn.split("\\").filter(Boolean);
+    if (parts.length === 0)
+        return fqn;
+    for (let i = 0; i < parts.length; i++) {
+        const suffix = `${parts.slice(i).join("/")}.php`;
+        const hits = bySuffix.get(suffix);
+        if (hits && hits.length === 1)
+            return hits[0];
+        if (hits && hits.length > 1)
+            break; // ambiguous at the most specific level — do not guess
+    }
+    return fqn;
+}
+/**
+ * Resolve a Rust `crate`-relative module path (`crate/a/b`, from `use crate::a::b::Item`)
+ * to the in-repo module file — `<crate root>/a/b.rs` or `<crate root>/a/b/mod.rs`, where
+ * the crate root is the `lib.rs`/`main.rs` directory the importing file lives under. The
+ * per-file crate root keeps a multi-crate workspace unambiguous. Not found or ambiguous
+ * (two roots, both `a/b.rs` and `a/b/mod.rs`) stays a `crate::…` string — never a guess.
+ */
+function resolveRustUse(spec, file, byId, crateRoots) {
+    const full = spec.replace(/^crate\/?/, ""); // "crate/a/b/Item" → "a/b/Item"; "crate" → ""
+    const fpath = toPosixPath(file);
+    // the crate this file belongs to: the longest root that contains it (workspace-safe)
+    const owning = crateRoots
+        .filter((r) => r === "" ? true : fpath === r || fpath.startsWith(`${r}/`))
+        .sort((a, b) => b.length - a.length);
+    // No owning crate root (e.g. an integration test under `tests/`, whose `crate::` is the
+    // TEST binary's own root, not a lib) → do NOT search every crate in a workspace: that
+    // resolves `crate::util` to some unrelated crate's util.rs. Keep it a string instead.
+    if (owning.length === 0)
+        return full === "" ? "crate" : `crate::${full.replace(/\//g, "::")}`;
+    const roots = [owning[0]];
+    const segs = full === "" ? [] : full.split("/");
+    const hitsFor = (rels) => {
+        const hits = new Set();
+        for (const r of roots)
+            for (const rel of rels) {
+                const cand = r === "" ? rel : `${r}/${rel}`;
+                if (byId.has(cand))
+                    hits.add(cand);
+            }
+        return hits;
+    };
+    // Try the longest module prefix first, shrinking toward — but NOT past — the first
+    // segment. `crate::a::b::C` resolves as module `a/b` (C is the item); `crate::net` as
+    // module `net`. The first prefix naming exactly one in-repo file wins; two matches at a
+    // level are ambiguous → drop rather than guess.
+    for (let k = segs.length; k >= 1; k--) {
+        const modPath = segs.slice(0, k).join("/");
+        const hits = hitsFor([`${modPath}.rs`, `${modPath}/mod.rs`]);
+        if (hits.size === 1)
+            return [...hits][0];
+        if (hits.size > 1)
+            break;
+    }
+    // The crate root (`lib.rs`/`main.rs`) is a target ONLY for `use crate::Item` or
+    // `use crate::{…}` — a deeper path whose module chain didn't resolve is genuinely
+    // unknown (a re-export, an inline `mod`, or out-of-tree), so keep it as a string.
+    if (segs.length <= 1) {
+        const hits = hitsFor(["lib.rs", "main.rs"]);
+        if (hits.size === 1)
+            return [...hits][0];
+    }
+    return full === "" ? "crate" : `crate::${full.replace(/\//g, "::")}`;
+}
 /**
  * Resolve a Go import package path to an in-repo file node when it points inside one of
  * the repo's modules; otherwise return the raw specifier (stdlib or third-party package).

package/dist/graph/resolve.js.map

@@ -1 +1 @@
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package/dist/graph/scopes.d.ts

@@ -1,6 +1,6 @@
 import type { GraphV1, ScopeV1 } from "./types.js";
-/** Walk the tree (reusing `walkDir`'s skip rules, including the repo's persisted
- * `--include-dir` override) and find project-marker dirs. */
+/** Walk the tree (reusing `walkDir`'s persisted directory and submodule
+ * choices) and find project-marker dirs. */
 export declare function discoverScopes(root: string, repoFiles?: string[]): ScopeV1[];
 /** Nearest-prefix owner. `scopes` MUST be sorted prefix-length desc; "" matches all.
  * Falls back to a synthetic root scope when `scopes` has no explicit "" entry and

package/dist/graph/scopes.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"scopes.d.ts","sourceRoot":"","sources":["../../src/graph/scopes.ts"],"names":[],"mappings":"AA4BA,OAAO,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,YAAY,CAAC;AAsGnD;4CAC4C;AAC5C,wBAAgB,cAAc,CAC5B,IAAI,EAAE,MAAM,EACZ,SAAS,GAAE,MAAM,EAEf,GACD,OAAO,EAAE,CAqIX;AAED;;+DAE+D;AAC/D,wBAAgB,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,OAAO,CAMhE;AAED;;+DAE+D;AAC/D,wBAAgB,UAAU,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAEjD;AAED;;;sCAGsC;AACtC,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,CAG1D;AAED;;;;2BAI2B;AAC3B,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAErE;AAED;;;;;;;;;GASG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAKxE;AAED;4CAC4C;AAC5C,wBAAgB,yBAAyB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,CAYhE;AAED;;2EAE2E;AAC3E,wBAAgB,aAAa,CAAC,KAAK,EAAE,OAAO,GAAG,OAAO,EAAE,CAEvD"}

package/dist/graph/scopes.js

@@ -3,7 +3,7 @@
  * stay per-scope instead of pooling a monorepo's biggest sub-project against
  * everything else. A "scope" is rooted at a directory that carries a
  * project-marker file (`package.json`, `go.mod`, `pyproject.toml`, `setup.py`,
- * `Cargo.toml`).
+ * `Cargo.toml`, `pom.xml`, `build.gradle`, `build.gradle.kts`).
  *
  * Discovery rules (see task brief for the numbered spec):
  *  1. Any directory with >=1 marker file is a scope candidate.
@@ -25,9 +25,9 @@ import { existsSync, readdirSync, readFileSync } from "node:fs";
 import { join, resolve } from "node:path";
 import { shouldSkipDir, walkDir } from "../ingest/fs.js";
 import { relPosix } from "../util/paths.js";
-import { readIncludeDirs } from "../util/state.js";
+import { readFollowSubmodules, readIncludeDirs } from "../util/state.js";
 /** Project-marker files, checked in this order (also the order `markers` is built in). */
-const MARKERS = ["package.json", "go.mod", "pyproject.toml", "setup.py", "Cargo.toml"];
+const MARKERS = ["package.json", "go.mod", "pyproject.toml", "setup.py", "Cargo.toml", "composer.json", "pom.xml", "build.gradle", "build.gradle.kts"];
 const CANONICAL_ROOT = [{ prefix: "", label: "", markers: [] }];
 /** Collect directories represented by the canonical visible file set. Building
  * this from `walkDir` keeps scope discovery aligned with extraction: an ignored
@@ -131,9 +131,11 @@ function resolveGlob(dirs, pattern) {
         return parent === base;
     });
 }
-/** Walk the tree (reusing `walkDir`'s skip rules, including the repo's persisted
- * `--include-dir` override) and find project-marker dirs. */
-export function discoverScopes(root, repoFiles = walkDir(root, readIncludeDirs(resolve(root)))) {
+/** Walk the tree (reusing `walkDir`'s persisted directory and submodule
+ * choices) and find project-marker dirs. */
+export function discoverScopes(root, repoFiles = walkDir(root, readIncludeDirs(resolve(root)), {
+    followSubmodules: readFollowSubmodules(resolve(root)),
+})) {
     const absRoot = resolve(root);
     const dirs = collectDirs(absRoot, repoFiles);
     const markerMap = new Map();

package/dist/graph/scopes.js.map

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package/dist/graph/source-files.d.ts

@@ -1,10 +1,19 @@
+/** Every extension graft has a parser for (depth + breadth + container), sorted
+ * and de-duped — the authoritative answer to "what does `-e` actually support". */
+export declare function supportedExtensions(): string[];
+/**
+ * The subset of user-supplied `-e` extensions that no parser claims (depth or breadth).
+ * `graft build -e ".vue"` used to accept these silently and index nothing; the CLI warns
+ * on whatever this returns so an unsupported extension is never a quiet no-op.
+ */
+export declare function unsupportedExtensions(exts: string[]): string[];
 /**
  * The source files a graph build parses: supported languages, minus the
  * output dir. When no pre-enumerated `repoFiles` is passed, the walk reads
- * `root`'s persisted `--include-dir` override (if any) directly from state —
- * so every caller that enumerates through here (the fingerprint probe, the
- * hooks/refresh path, none of which ever see a CLI flag) behaves identically
- * to the `graft build --include-dir` invocation that set it.
+ * `root`'s persisted file-walk choices directly from state, so every caller
+ * that enumerates through here (the fingerprint probe and hooks/refresh path,
+ * none of which ever see a CLI flag) behaves identically to the build that
+ * saved those choices.
  */
 export declare function listSourceFiles(root: string, outDir: string, repoFiles?: string[]): string[];
 export interface SourceStat {

package/dist/graph/source-files.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"source-files.d.ts","sourceRoot":"","sources":["../../src/graph/source-files.ts"],"names":[],"mappings":"AAiBA;mFACmF;AACnF,wBAAgB,mBAAmB,IAAI,MAAM,EAAE,CAE9C;AAQD;;;;GAIG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAG9D;AAED;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAC7B,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,MAAM,EACd,SAAS,GAAE,MAAM,EAEf,GACD,MAAM,EAAE,CASV;AAED,MAAM,WAAW,UAAU;IACzB,qBAAqB;IACrB,GAAG,EAAE,MAAM,CAAC;IACZ;;oEAEgE;IAChE,GAAG,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,MAAM,EAAE,GAAG,UAAU,EAAE,CAYhG"}