@nanonets/graft 0.10.0 → 0.12.0

package/dist/context/build.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"build.d.ts","sourceRoot":"","sources":["../../src/context/build.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AACrD,OAAO,KAAK,EAA0B,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAiB/E,yCAAyC;AACzC,eAAO,MAAM,eAAe,UAK3B,CAAC;AAKF,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,WAAW,GAAG,YAAY,GAAG,OAAO,CAAC;IAC5C,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,YAAY;IAC3B,4DAA4D;IAC5D,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,qEAAqE;IACrE,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,kGAAkG;IAClG,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,UAAU,CAAC;IACvB,WAAW,EAAE,WAAW,CAAC;IACzB,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE,aAAa,KAAK,IAAI,CAAC;CAC5C;AAED,MAAM,WAAW,WAAW;IAC1B,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;IACnB,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAwBD,wBAAsB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,YAAY,GAAG,OAAO,CAAC,WAAW,CAAC,CA4KxF"}
+{"version":3,"file":"build.d.ts","sourceRoot":"","sources":["../../src/context/build.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AAErD,OAAO,KAAK,EAA0B,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAiB/E,yCAAyC;AACzC,eAAO,MAAM,eAAe,UAK3B,CAAC;AAKF,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,WAAW,GAAG,YAAY,GAAG,OAAO,CAAC;IAC5C,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,YAAY;IAC3B,4DAA4D;IAC5D,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,qEAAqE;IACrE,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,kGAAkG;IAClG,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,UAAU,CAAC;IACvB,WAAW,EAAE,WAAW,CAAC;IACzB,2FAA2F;IAC3F,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,UAAU,CAAC,EAAE,CAAC,IAAI,EAAE,aAAa,KAAK,IAAI,CAAC;CAC5C;AAED,MAAM,WAAW,WAAW;IAC1B,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;IACnB,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB;6FACyF;IACzF,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,0DAA0D;IAC1D,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAwBD,wBAAsB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,YAAY,GAAG,OAAO,CAAC,WAAW,CAAC,CAkNxF"}

package/dist/context/build.js

@@ -11,13 +11,14 @@
  *      source files so staleness stays exact.
  *   5. Write one markdown file per node (preserving human notes) + a manifest.
  */
-import { readFileSync, writeFileSync, mkdirSync, existsSync } from "node:fs";
+import { readFileSync, writeFileSync, renameSync, mkdirSync, existsSync } from "node:fs";
 import { join, resolve } from "node:path";
 import { walkDir } from "../ingest/fs.js";
 import { contentHash } from "../util/id.js";
 import { relPosix } from "../util/paths.js";
 import { readSourceFile } from "../util/source.js";
-import { readIncludeDirs } from "../util/state.js";
+import { readFollowSubmodules, readIncludeDirs } from "../util/state.js";
+import { LlmFailureGate } from "../ai/failure.js";
 import { CACHE_DIR, MANIFEST_VERSION, contextDirFor, deleteNode, digestSources, existingNodeSlugs, slugify, writeManifest, writeNode, } from "./node-file.js";
 /** Extensions treated as source code. */
 export const CODE_EXTENSIONS = [
@@ -32,13 +33,27 @@ export async function buildContext(dir, opts) {
     const root = resolve(dir);
     const outDir = contextDirFor(root, opts.contextDir);
     const exts = opts.extensions ?? CODE_EXTENSIONS;
-    // Read root's persisted `--include-dir` override (same lookup source-files.ts
-    // does for the Tier-1 wiring graph) so an included dir like `build/` isn't
-    // invisible to the Tier-2 concept pipeline while the wiring graph sees it.
-    const files = walkDir(root, readIncludeDirs(root))
+    // Read the same persisted walk choices as the Tier-1 wiring graph, so the
+    // Tier-2 concept pipeline sees exactly the same directories and submodules.
+    const files = walkDir(root, readIncludeDirs(root), {
+        followSubmodules: readFollowSubmodules(root),
+    })
         .filter((f) => exts.some((e) => f.toLowerCase().endsWith(e)))
         .filter((f) => !f.startsWith(outDir));
     const cache = loadCache(outDir);
+    // Flush the summary cache to disk during phase 1 so a build interrupted
+    // partway (session/rate limit, crash, Ctrl-C) resumes without re-summarizing
+    // the files it already did. Throttled to keep disk churn negligible; on the
+    // next run every already-summarized file is a content-hash cache hit ($0).
+    let lastFlush = Date.now();
+    const flushEveryMs = summaryCheckpointMs();
+    const maybeFlush = () => {
+        const now = Date.now();
+        if (now - lastFlush < flushEveryMs)
+            return;
+        lastFlush = now;
+        saveCache(outDir, cache);
+    };
     const result = {
         contextDir: outDir,
         files: 0,
@@ -48,9 +63,17 @@ export async function buildContext(dir, opts) {
         nodes: 0,
         links: 0,
         errors: [],
+        failedFiles: 0,
+        skippedFiles: 0,
     };
     // Phase 1: summarize each file, concurrent, content-hash cached.
-    const work = await mapWithConcurrency(files, 8, async (file, i) => {
+    //
+    // The gate is shared with the crux pass (`graph/enrich.ts`): once the provider has
+    // clearly stopped serving — a spent quota, a rejected key — the remaining files are
+    // not attempted. This pass is where #127's 1,617 doomed calls were spent, one per
+    // file, before the build exited 0.
+    const gate = new LlmFailureGate();
+    const work = await mapWithConcurrency(files, Math.max(1, opts.concurrency ?? 8), async (file, i) => {
         const rel = relPosix(root, file);
         opts.onProgress?.({ phase: "summarize", index: i, total: files.length, file: rel });
         let code;
@@ -70,17 +93,33 @@ export async function buildContext(dir, opts) {
             result.cached++;
             return { rel, hash, summary: hit.summary };
         }
+        // A cache hit is still served after the gate closes (it costs nothing) — only
+        // the call is skipped.
+        if (gate.stopped) {
+            gate.skip();
+            return { rel, hash };
+        }
         try {
             const summary = await opts.summarizer.summarize(code, { path: rel });
             cache.summaries[rel] = { hash, summary };
             result.summarized++;
+            maybeFlush();
+            gate.succeeded();
             return { rel, hash, summary };
         }
         catch (err) {
-            result.errors.push(`${rel}: ${errMsg(err)}`);
+            const message = errMsg(err);
+            result.errors.push(`${rel}: ${message}`);
+            gate.record(message);
             return { rel, hash }; // covered (counts against staleness) but not summarized
         }
     });
+    result.failedFiles = gate.failed;
+    result.skippedFiles = gate.skipped;
+    result.fatal = gate.fatal;
+    // Phase 1 done: persist every summary before the (also LLM-backed) synthesis
+    // phase, so an interruption there never discards phase-1 work.
+    saveCache(outDir, cache);
     const processed = work.filter((w) => w !== undefined);
     result.files = processed.length;
     const hashByPath = new Map(processed.map((w) => [w.rel, w.hash]));
@@ -256,7 +295,16 @@ function loadCache(outDir) {
 function saveCache(outDir, cache) {
     const path = cachePath(outDir);
     mkdirSync(join(outDir, CACHE_DIR), { recursive: true });
-    writeFileSync(path, JSON.stringify(cache, null, 2));
+    // Atomic: a kill mid-write can't leave a truncated (unparseable) cache that
+    // would throw away every prior summary on the next load.
+    const tmp = `${path}.tmp`;
+    writeFileSync(tmp, JSON.stringify(cache, null, 2));
+    renameSync(tmp, path);
+}
+/** Min interval between phase-1 cache flushes. Env seam for tests. */
+function summaryCheckpointMs() {
+    const raw = Number(process.env.GRAFT_SUMMARY_CHECKPOINT_MS);
+    return Number.isFinite(raw) && raw >= 0 ? raw : 15_000;
 }
 /** Run `fn` over `items` with at most `limit` in flight, preserving order. */
 async function mapWithConcurrency(items, limit, fn) {

package/dist/context/build.js.map

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package/dist/context/check.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/context/check.ts"],"names":[],"mappings":"AAwBA,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,OAAO,CAAC;IACZ,+DAA+D;IAC/D,OAAO,EAAE,OAAO,CAAC;IACjB,YAAY,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAChE,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,EAAE,CAAC;CACtB;AAED,MAAM,WAAW,YAAY;IAC3B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,WAAW,CA2E9E;AAED;mCACmC;AACnC,MAAM,WAAW,eAAe;IAC9B,wDAAwD;IACxD,OAAO,EAAE,MAAM,CAAC;IAChB,gDAAgD;IAChD,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;;;;GAOG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,eAAe,GAAG,IAAI,CAU3F;AAED;;wDAEwD;AACxD,wBAAgB,WAAW,CAAC,CAAC,EAAE,eAAe,GAAG,IAAI,GAAG,MAAM,GAAG,IAAI,CAOpE;AAED,wDAAwD;AACxD,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,WAAW,GAAG,MAAM,CAyBxD"}
+{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/context/check.ts"],"names":[],"mappings":"AAwBA,MAAM,WAAW,WAAW;IAC1B,EAAE,EAAE,OAAO,CAAC;IACZ,+DAA+D;IAC/D,OAAO,EAAE,OAAO,CAAC;IACjB,YAAY,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IAChE,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,EAAE,CAAC;CACtB;AAED,MAAM,WAAW,YAAY;IAC3B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;CACvB;AAED,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,WAAW,CA4E9E;AAED;mCACmC;AACnC,MAAM,WAAW,eAAe;IAC9B,wDAAwD;IACxD,OAAO,EAAE,MAAM,CAAC;IAChB,gDAAgD;IAChD,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;;;;GAOG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE,YAAiB,GAAG,eAAe,GAAG,IAAI,CAU3F;AAED;;wDAEwD;AACxD,wBAAgB,WAAW,CAAC,CAAC,EAAE,eAAe,GAAG,IAAI,GAAG,MAAM,GAAG,IAAI,CAOpE;AAED,wDAAwD;AACxD,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,WAAW,GAAG,MAAM,CAyBxD"}

package/dist/context/check.js

@@ -18,7 +18,7 @@ import { walkDir } from "../ingest/fs.js";
 import { contentHash } from "../util/id.js";
 import { relPosix } from "../util/paths.js";
 import { readSourceFile } from "../util/source.js";
-import { readIncludeDirs } from "../util/state.js";
+import { readFollowSubmodules, readIncludeDirs } from "../util/state.js";
 import { CODE_EXTENSIONS } from "./build.js";
 import { contextDirFor, readManifest, readNodes } from "./node-file.js";
 export function checkContext(dir, opts = {}) {
@@ -38,12 +38,13 @@ export function checkContext(dir, opts = {}) {
         result.missing = true;
         return result;
     }
-    // Current code files on disk (same rules `init` used) — including root's
-    // persisted `--include-dir` override, so this freshness check never
-    // disagrees with buildContext about what "current" means (an included
-    // build/ must not silently vanish from one side and not the other).
+    // Current code files on disk (same persisted directory/submodule choices
+    // `init` used), so this freshness check never disagrees with buildContext
+    // about what "current" means.
     const current = new Map(); // rel → hash
-    for (const file of walkDir(root, readIncludeDirs(root))) {
+    for (const file of walkDir(root, readIncludeDirs(root), {
+        followSubmodules: readFollowSubmodules(root),
+    })) {
         if (file.startsWith(outDir))
             continue;
         if (!exts.some((e) => file.toLowerCase().endsWith(e)))

package/dist/context/check.js.map

@@ -1 +1 @@
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package/dist/context/node-file.d.ts.map

@@ -1 +1 @@
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package/dist/context/node-file.js

@@ -70,16 +70,23 @@ export function ensureGitignored(root, contextDir) {
     const rel = relPosix(root, contextDir);
     if (rel === "" || rel.startsWith(".."))
         return; // dir is at/above the repo root — nothing sane to ignore
-    const entry = `${stripTrailingSlashes(rel)}/`;
+    const bare = stripTrailingSlashes(rel); // "graft" (or a `--dir` subpath like "tools/ctx")
+    // Root-ANCHORED, so it ignores exactly this repo's `graft/` and not a directory named
+    // `graft` at any depth. An unanchored `graft/` also matched `.claude/skills/graft/`, so
+    // committing the skill graft just wrote was silently dropped (#79). `rel` is always
+    // repo-relative here, so a leading `/` is always safe (incl. a `--dir` subpath).
+    const entry = `/${bare}/`;
     const path = join(root, ".gitignore");
     let current = "";
     try {
         current = readFileSync(path, "utf8");
     }
     catch { /* no .gitignore yet — we create one */ }
+    // Accept the anchored form AND the older unanchored `graft/` / `graft`, so existing
+    // repos aren't double-appended and a hand-anchored entry survives the next build.
     const present = current.split("\n").some((l) => {
         const t = l.trim();
-        return t === entry || t === rel;
+        return t === entry || t === `${bare}/` || t === bare;
     });
     if (present)
         return;

package/dist/context/node-file.js.map

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package/dist/graph/bindings.d.ts.map

@@ -1 +1 @@
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