@nahisaho/musubix-ontology-mcp 1.0.0

package/dist/store/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/store/index.js

@@ -0,0 +1,7 @@
+/**
+ * @fileoverview Ontology store module
+ * @traceability TSK-ONTO-001
+ */
+export { OntologyStore } from './ontology-store.js';
+export { N3Store } from './n3-store.js';
+//# sourceMappingURL=index.js.map

package/dist/store/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/store/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,OAAO,EAAE,OAAO,EAA6D,MAAM,eAAe,CAAC"}

package/dist/store/n3-store.d.ts

@@ -0,0 +1,115 @@
+/**
+ * @fileoverview N3.js-based RDF triple store
+ * @traceability TSK-ONTO-001, REQ-ONTO-001-F001
+ */
+import type { Triple, OntologyStoreConfig } from '../types.js';
+/**
+ * Query pattern for SPARQL-like queries
+ */
+export interface QueryPattern {
+    subject?: string;
+    predicate?: string;
+    object?: string;
+    graph?: string;
+}
+/**
+ * N3 Query result (different from types.ts QueryResult)
+ */
+export interface N3QueryResult {
+    subject: string;
+    predicate: string;
+    object: string;
+    graph?: string;
+}
+/**
+ * Inference rule
+ */
+export interface InferenceRule {
+    id: string;
+    name: string;
+    pattern: QueryPattern;
+    conclusion: (bindings: Record<string, string>) => Triple[];
+}
+/**
+ * N3.js-based RDF store with inference support
+ *
+ * @description
+ * Provides a high-performance RDF triple store using N3.js.
+ * Supports:
+ * - Turtle/N-Triples/N-Quads parsing and serialization
+ * - Pattern-based querying
+ * - Basic RDFS inference
+ * - Named graphs
+ */
+export declare class N3Store {
+    private store;
+    private config;
+    private dirty;
+    private inferenceRules;
+    constructor(config?: Partial<OntologyStoreConfig>);
+    /**
+     * Initialize RDFS inference rules
+     */
+    private initializeInferenceRules;
+    /**
+     * Load store from Turtle file
+     */
+    load(): Promise<void>;
+    /**
+     * Save store to Turtle file
+     */
+    save(): Promise<void>;
+    /**
+     * Add a triple to the store
+     */
+    addTriple(triple: Triple, graph?: string): boolean;
+    /**
+     * Add multiple triples
+     */
+    addTriples(triples: Triple[], graph?: string): number;
+    /**
+     * Remove a triple from the store
+     */
+    removeTriple(triple: Triple, graph?: string): boolean;
+    /**
+     * Query triples by pattern
+     */
+    query(pattern: QueryPattern): N3QueryResult[];
+    /**
+     * Check if a triple exists
+     */
+    has(triple: Triple, graph?: string): boolean;
+    /**
+     * Get all subjects of a given type
+     */
+    getSubjectsOfType(typeUri: string): string[];
+    /**
+     * Get all properties of a subject
+     */
+    getProperties(subject: string): N3QueryResult[];
+    /**
+     * Parse and import Turtle content
+     */
+    importTurtle(content: string): Promise<number>;
+    /**
+     * Export store as Turtle
+     */
+    exportTurtle(prefixes?: Record<string, string>): Promise<string>;
+    /**
+     * Apply inference rules for a triple
+     */
+    private applyInference;
+    /**
+     * Clear all triples
+     */
+    clear(): void;
+    /**
+     * Get triple count
+     */
+    get size(): number;
+    /**
+     * Get all named graphs
+     */
+    getGraphs(): string[];
+}
+//# sourceMappingURL=n3-store.d.ts.map

package/dist/store/n3-store.d.ts.map

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package/dist/store/n3-store.js

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+/**
+ * @fileoverview N3.js-based RDF triple store
+ * @traceability TSK-ONTO-001, REQ-ONTO-001-F001
+ */
+import * as N3 from 'n3';
+import { readFile, writeFile, mkdir } from 'node:fs/promises';
+import { dirname } from 'node:path';
+const { DataFactory, Store, Writer, Parser } = N3;
+const { namedNode, literal, quad } = DataFactory;
+/**
+ * N3.js-based RDF store with inference support
+ *
+ * @description
+ * Provides a high-performance RDF triple store using N3.js.
+ * Supports:
+ * - Turtle/N-Triples/N-Quads parsing and serialization
+ * - Pattern-based querying
+ * - Basic RDFS inference
+ * - Named graphs
+ */
+export class N3Store {
+    store;
+    config;
+    dirty = false;
+    inferenceRules = [];
+    constructor(config = {}) {
+        this.store = new Store();
+        this.config = {
+            storagePath: config.storagePath ?? './storage/ontology/n3-store.ttl',
+            enableInference: config.enableInference ?? true,
+            maxTriples: config.maxTriples ?? 100000,
+        };
+        if (this.config.enableInference) {
+            this.initializeInferenceRules();
+        }
+    }
+    /**
+     * Initialize RDFS inference rules
+     */
+    initializeInferenceRules() {
+        // rdfs:subClassOf transitivity
+        this.inferenceRules.push({
+            id: 'rdfs-subclass-transitivity',
+            name: 'RDFS SubClass Transitivity',
+            pattern: {
+                predicate: 'http://www.w3.org/2000/01/rdf-schema#subClassOf',
+            },
+            conclusion: (bindings) => {
+                // A subClassOf B, B subClassOf C => A subClassOf C
+                const results = [];
+                const subClassOf = 'http://www.w3.org/2000/01/rdf-schema#subClassOf';
+                // Find all superclasses of bindings.object
+                const superQuads = this.store.getQuads(namedNode(bindings.object), namedNode(subClassOf), null, null);
+                for (const superQuad of superQuads) {
+                    results.push({
+                        subject: bindings.subject,
+                        predicate: subClassOf,
+                        object: superQuad.object.value,
+                    });
+                }
+                return results;
+            },
+        });
+        // rdf:type propagation via rdfs:subClassOf
+        this.inferenceRules.push({
+            id: 'rdfs-type-subclass',
+            name: 'RDFS Type via SubClass',
+            pattern: {
+                predicate: 'http://www.w3.org/1999/02/22-rdf-syntax-ns#type',
+            },
+            conclusion: (bindings) => {
+                const results = [];
+                const rdfType = 'http://www.w3.org/1999/02/22-rdf-syntax-ns#type';
+                const subClassOf = 'http://www.w3.org/2000/01/rdf-schema#subClassOf';
+                // Find all superclasses of bindings.object
+                const superQuads = this.store.getQuads(namedNode(bindings.object), namedNode(subClassOf), null, null);
+                for (const superQuad of superQuads) {
+                    results.push({
+                        subject: bindings.subject,
+                        predicate: rdfType,
+                        object: superQuad.object.value,
+                    });
+                }
+                return results;
+            },
+        });
+    }
+    /**
+     * Load store from Turtle file
+     */
+    async load() {
+        try {
+            const data = await readFile(this.config.storagePath, 'utf-8');
+            const parser = new Parser();
+            const quads = parser.parse(data);
+            this.store = new Store(quads);
+            this.dirty = false;
+        }
+        catch {
+            // File doesn't exist - start with empty store
+            this.store = new Store();
+        }
+    }
+    /**
+     * Save store to Turtle file
+     */
+    async save() {
+        if (!this.dirty)
+            return;
+        const dir = dirname(this.config.storagePath);
+        await mkdir(dir, { recursive: true });
+        const writer = new Writer({
+            prefixes: {
+                rdf: 'http://www.w3.org/1999/02/22-rdf-syntax-ns#',
+                rdfs: 'http://www.w3.org/2000/01/rdf-schema#',
+                owl: 'http://www.w3.org/2002/07/owl#',
+                xsd: 'http://www.w3.org/2001/XMLSchema#',
+                sdd: 'https://musubix.dev/ontology/sdd#',
+                pattern: 'https://musubix.dev/ontology/pattern#',
+            },
+        });
+        const quads = this.store.getQuads(null, null, null, null);
+        for (const q of quads) {
+            writer.addQuad(q);
+        }
+        return new Promise((resolve, reject) => {
+            writer.end((error, result) => {
+                if (error) {
+                    reject(error);
+                }
+                else {
+                    writeFile(this.config.storagePath, result, 'utf-8')
+                        .then(() => {
+                        this.dirty = false;
+                        resolve();
+                    })
+                        .catch(reject);
+                }
+            });
+        });
+    }
+    /**
+     * Add a triple to the store
+     */
+    addTriple(triple, graph) {
+        if (this.store.size >= this.config.maxTriples) {
+            return false;
+        }
+        const subject = namedNode(triple.subject);
+        const predicate = namedNode(triple.predicate);
+        const object = triple.object.startsWith('http://') || triple.object.startsWith('https://')
+            ? namedNode(triple.object)
+            : literal(triple.object);
+        const graphNode = graph ? namedNode(graph) : DataFactory.defaultGraph();
+        this.store.addQuad(quad(subject, predicate, object, graphNode));
+        this.dirty = true;
+        // Apply inference if enabled
+        if (this.config.enableInference) {
+            this.applyInference(triple);
+        }
+        return true;
+    }
+    /**
+     * Add multiple triples
+     */
+    addTriples(triples, graph) {
+        let added = 0;
+        for (const triple of triples) {
+            if (this.addTriple(triple, graph)) {
+                added++;
+            }
+        }
+        return added;
+    }
+    /**
+     * Remove a triple from the store
+     */
+    removeTriple(triple, graph) {
+        const subject = namedNode(triple.subject);
+        const predicate = namedNode(triple.predicate);
+        const object = triple.object.startsWith('http://') || triple.object.startsWith('https://')
+            ? namedNode(triple.object)
+            : literal(triple.object);
+        const graphNode = graph ? namedNode(graph) : null;
+        const quads = this.store.getQuads(subject, predicate, object, graphNode);
+        if (quads.length === 0)
+            return false;
+        for (const q of quads) {
+            this.store.removeQuad(q);
+        }
+        this.dirty = true;
+        return true;
+    }
+    /**
+     * Query triples by pattern
+     */
+    query(pattern) {
+        const subject = pattern.subject ? namedNode(pattern.subject) : null;
+        const predicate = pattern.predicate ? namedNode(pattern.predicate) : null;
+        const object = pattern.object
+            ? pattern.object.startsWith('http://') || pattern.object.startsWith('https://')
+                ? namedNode(pattern.object)
+                : literal(pattern.object)
+            : null;
+        const graph = pattern.graph ? namedNode(pattern.graph) : null;
+        const quads = this.store.getQuads(subject, predicate, object, graph);
+        return quads.map((q) => ({
+            subject: q.subject.value,
+            predicate: q.predicate.value,
+            object: q.object.value,
+            graph: q.graph.value || undefined,
+        }));
+    }
+    /**
+     * Check if a triple exists
+     */
+    has(triple, graph) {
+        const subject = namedNode(triple.subject);
+        const predicate = namedNode(triple.predicate);
+        const object = triple.object.startsWith('http://') || triple.object.startsWith('https://')
+            ? namedNode(triple.object)
+            : literal(triple.object);
+        const graphNode = graph ? namedNode(graph) : null;
+        return this.store.getQuads(subject, predicate, object, graphNode).length > 0;
+    }
+    /**
+     * Get all subjects of a given type
+     */
+    getSubjectsOfType(typeUri) {
+        const rdfType = 'http://www.w3.org/1999/02/22-rdf-syntax-ns#type';
+        const quads = this.store.getQuads(null, namedNode(rdfType), namedNode(typeUri), null);
+        return quads.map((q) => q.subject.value);
+    }
+    /**
+     * Get all properties of a subject
+     */
+    getProperties(subject) {
+        const quads = this.store.getQuads(namedNode(subject), null, null, null);
+        return quads.map((q) => ({
+            subject: q.subject.value,
+            predicate: q.predicate.value,
+            object: q.object.value,
+            graph: q.graph.value || undefined,
+        }));
+    }
+    /**
+     * Parse and import Turtle content
+     */
+    async importTurtle(content) {
+        const parser = new Parser();
+        const quads = parser.parse(content);
+        let added = 0;
+        for (const q of quads) {
+            if (this.store.size >= this.config.maxTriples)
+                break;
+            this.store.addQuad(q);
+            added++;
+        }
+        this.dirty = true;
+        return added;
+    }
+    /**
+     * Export store as Turtle
+     */
+    exportTurtle(prefixes) {
+        const writer = new Writer({
+            prefixes: prefixes ?? {
+                rdf: 'http://www.w3.org/1999/02/22-rdf-syntax-ns#',
+                rdfs: 'http://www.w3.org/2000/01/rdf-schema#',
+                owl: 'http://www.w3.org/2002/07/owl#',
+                sdd: 'https://musubix.dev/ontology/sdd#',
+                pattern: 'https://musubix.dev/ontology/pattern#',
+            },
+        });
+        const quads = this.store.getQuads(null, null, null, null);
+        for (const q of quads) {
+            writer.addQuad(q);
+        }
+        return new Promise((resolve, reject) => {
+            writer.end((error, result) => {
+                if (error)
+                    reject(error);
+                else
+                    resolve(result);
+            });
+        });
+    }
+    /**
+     * Apply inference rules for a triple
+     */
+    applyInference(triple) {
+        const bindings = {
+            subject: triple.subject,
+            predicate: triple.predicate,
+            object: triple.object,
+        };
+        for (const rule of this.inferenceRules) {
+            // Check if pattern matches
+            if (rule.pattern.predicate && rule.pattern.predicate !== triple.predicate) {
+                continue;
+            }
+            if (rule.pattern.subject && rule.pattern.subject !== triple.subject) {
+                continue;
+            }
+            if (rule.pattern.object && rule.pattern.object !== triple.object) {
+                continue;
+            }
+            // Apply rule and add inferred triples
+            const inferred = rule.conclusion(bindings);
+            for (const inferredTriple of inferred) {
+                if (!this.has(inferredTriple)) {
+                    this.addTriple(inferredTriple);
+                }
+            }
+        }
+    }
+    /**
+     * Clear all triples
+     */
+    clear() {
+        this.store = new Store();
+        this.dirty = true;
+    }
+    /**
+     * Get triple count
+     */
+    get size() {
+        return this.store.size;
+    }
+    /**
+     * Get all named graphs
+     */
+    getGraphs() {
+        const graphs = new Set();
+        const quads = this.store.getQuads(null, null, null, null);
+        for (const q of quads) {
+            if (q.graph.value) {
+                graphs.add(q.graph.value);
+            }
+        }
+        return Array.from(graphs);
+    }
+}
+//# sourceMappingURL=n3-store.js.map

package/dist/store/n3-store.js.map

@@ -0,0 +1 @@
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package/dist/store/ontology-store.d.ts

@@ -0,0 +1,59 @@
+/**
+ * @fileoverview Ontology store with local persistence
+ * @traceability TSK-ONTO-001, REQ-ONTO-001-F001
+ */
+import type { Ontology, Triple, OntologyStoreConfig } from '../types.js';
+/**
+ * Ontology store with local JSON persistence
+ *
+ * @description
+ * Manages ontology storage locally (no external communication).
+ * Supports CRUD operations on ontologies and triples.
+ */
+export declare class OntologyStore {
+    private ontologies;
+    private config;
+    private dirty;
+    constructor(config?: Partial<OntologyStoreConfig>);
+    /**
+     * Load store from disk
+     */
+    load(): Promise<void>;
+    /**
+     * Save store to disk
+     */
+    save(): Promise<void>;
+    /**
+     * Create new ontology
+     */
+    create(id: string, namespace: string, prefixes?: Record<string, string>): Ontology;
+    /**
+     * Get ontology by ID
+     */
+    get(id: string): Ontology | undefined;
+    /**
+     * Delete ontology
+     */
+    delete(id: string): boolean;
+    /**
+     * Add triple to ontology
+     */
+    addTriple(ontologyId: string, triple: Triple): boolean;
+    /**
+     * Get all triples from ontology
+     */
+    getTriples(ontologyId: string): Triple[];
+    /**
+     * List all ontologies
+     */
+    list(): Ontology[];
+    /**
+     * Get total triple count
+     */
+    get tripleCount(): number;
+    /**
+     * Get ontology count
+     */
+    get size(): number;
+}
+//# sourceMappingURL=ontology-store.d.ts.map

package/dist/store/ontology-store.d.ts.map

@@ -0,0 +1 @@
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