@nahisaho/musubix-ontology-mcp 1.0.0

package/dist/integration/pattern-bridge.js

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+/**
+ * @fileoverview Pattern-Ontology Integration Bridge
+ * @traceability TSK-INT-001, REQ-INT-001
+ *
+ * Integrates Pattern Library Learning with Ontology Reasoning:
+ * - Converts patterns to RDF triples for knowledge graph
+ * - Applies inference rules to discover pattern relationships
+ * - Enables semantic querying of pattern library
+ */
+import { RuleEngine } from '../inference/rule-engine.js';
+/**
+ * Namespace URIs
+ */
+const NS = {
+    pattern: 'https://musubix.dev/ontology/pattern#',
+    sdd: 'https://musubix.dev/ontology/sdd#',
+    rdf: 'http://www.w3.org/1999/02/22-rdf-syntax-ns#',
+    rdfs: 'http://www.w3.org/2000/01/rdf-schema#',
+    owl: 'http://www.w3.org/2002/07/owl#',
+};
+/**
+ * Pattern-Ontology Integration Bridge
+ *
+ * Provides bidirectional integration between:
+ * - Pattern Library (structural code patterns)
+ * - Ontology Store (semantic knowledge graph)
+ */
+export class PatternOntologyBridge {
+    store;
+    ruleEngine;
+    config;
+    patternCache = new Map();
+    constructor(store, config) {
+        this.store = store;
+        this.config = {
+            enableInference: config?.enableInference ?? true,
+            minConfidence: config?.minConfidence ?? 0.5,
+            maxInferenceIterations: config?.maxInferenceIterations ?? 5,
+        };
+        this.ruleEngine = new RuleEngine({
+            maxIterations: this.config.maxInferenceIterations,
+        });
+        // Add pattern-specific inference rules
+        this.addPatternInferenceRules();
+    }
+    /**
+     * Add pattern-specific inference rules
+     */
+    addPatternInferenceRules() {
+        // Subsumption transitivity
+        this.ruleEngine.addRule({
+            id: 'pattern-subsumes-trans',
+            name: 'Pattern Subsumption Transitivity',
+            description: 'If A subsumes B and B subsumes C, then A subsumes C',
+            priority: 90,
+            conditions: [
+                { type: 'transitive', predicate: `${NS.pattern}subsumes` },
+            ],
+            actions: [],
+        });
+        // Subsumes implies specializes inverse
+        this.ruleEngine.addRule({
+            id: 'pattern-subsumes-inverse',
+            name: 'Subsumes-Specializes Inverse',
+            description: 'If A subsumes B, then B specializes A',
+            priority: 85,
+            conditions: [
+                { type: 'inverse', predicate1: `${NS.pattern}subsumes`, predicate2: `${NS.pattern}specializes` },
+            ],
+            actions: [],
+        });
+        // SimilarTo is symmetric
+        this.ruleEngine.addRule({
+            id: 'pattern-similar-sym',
+            name: 'Pattern Similarity Symmetry',
+            description: 'If A similarTo B, then B similarTo A',
+            priority: 80,
+            conditions: [
+                { type: 'symmetric', predicate: `${NS.pattern}similarTo` },
+            ],
+            actions: [],
+        });
+    }
+    /**
+     * Import pattern into ontology
+     */
+    importPattern(pattern) {
+        const patternUri = this.getPatternUri(pattern.id);
+        // Store pattern in cache
+        this.patternCache.set(pattern.id, pattern);
+        // Create pattern entity triples
+        const triples = [
+            // Type declaration
+            {
+                subject: patternUri,
+                predicate: `${NS.rdf}type`,
+                object: `${NS.pattern}Pattern`,
+            },
+            // Name
+            {
+                subject: patternUri,
+                predicate: `${NS.rdfs}label`,
+                object: pattern.name,
+            },
+            // Language
+            {
+                subject: patternUri,
+                predicate: `${NS.pattern}language`,
+                object: pattern.language,
+            },
+            // AST root type
+            {
+                subject: patternUri,
+                predicate: `${NS.pattern}astType`,
+                object: pattern.ast.type,
+            },
+            // Frequency
+            {
+                subject: patternUri,
+                predicate: `${NS.pattern}frequency`,
+                object: String(pattern.frequency),
+            },
+            // Hole count
+            {
+                subject: patternUri,
+                predicate: `${NS.pattern}holeCount`,
+                object: String(pattern.holes.length),
+            },
+        ];
+        // Add hole types
+        for (const hole of pattern.holes) {
+            triples.push({
+                subject: patternUri,
+                predicate: `${NS.pattern}hasHoleType`,
+                object: hole.type,
+            });
+        }
+        // Add AST structure classification
+        const structureClass = this.classifyASTStructure(pattern.ast);
+        triples.push({
+            subject: patternUri,
+            predicate: `${NS.pattern}structureClass`,
+            object: structureClass,
+        });
+        // Add complexity metrics
+        const complexity = this.calculateComplexity(pattern.ast);
+        triples.push({
+            subject: patternUri,
+            predicate: `${NS.pattern}complexity`,
+            object: String(complexity),
+        });
+        // Store triples
+        return this.store.addTriples(triples) === triples.length;
+    }
+    /**
+     * Import multiple patterns
+     */
+    importPatterns(patterns) {
+        let imported = 0;
+        for (const pattern of patterns) {
+            if (this.importPattern(pattern)) {
+                imported++;
+            }
+        }
+        // Discover relationships after import
+        if (this.config.enableInference) {
+            this.discoverRelationships(patterns);
+        }
+        return imported;
+    }
+    /**
+     * Discover relationships between patterns
+     */
+    discoverRelationships(patterns) {
+        const relationships = [];
+        for (let i = 0; i < patterns.length; i++) {
+            for (let j = i + 1; j < patterns.length; j++) {
+                const a = patterns[i];
+                const b = patterns[j];
+                // Check subsumption
+                const subsumption = this.checkSubsumption(a, b);
+                if (subsumption) {
+                    relationships.push(subsumption);
+                    this.addRelationshipTriple(subsumption);
+                }
+                // Check similarity
+                const similarity = this.checkSimilarity(a, b);
+                if (similarity && similarity.confidence >= this.config.minConfidence) {
+                    relationships.push(similarity);
+                    this.addRelationshipTriple(similarity);
+                }
+                // Check composition
+                const composition = this.checkComposition(a, b);
+                if (composition) {
+                    relationships.push(composition);
+                    this.addRelationshipTriple(composition);
+                }
+            }
+        }
+        // Apply inference rules
+        if (this.config.enableInference) {
+            this.applyInference();
+        }
+        return relationships;
+    }
+    /**
+     * Check if pattern A subsumes pattern B
+     */
+    checkSubsumption(a, b) {
+        // A subsumes B if A is more general (has more holes at same positions)
+        if (a.ast.type !== b.ast.type)
+            return null;
+        if (a.language !== b.language)
+            return null;
+        const aHoleCount = a.holes.length;
+        const bHoleCount = b.holes.length;
+        // More holes = more general
+        if (aHoleCount > bHoleCount) {
+            const confidence = Math.min(1.0, (aHoleCount - bHoleCount) / Math.max(aHoleCount, 1) + 0.5);
+            return {
+                source: a.id,
+                target: b.id,
+                relation: 'subsumes',
+                confidence,
+                evidence: [`A has ${aHoleCount} holes, B has ${bHoleCount} holes`],
+            };
+        }
+        return null;
+    }
+    /**
+     * Check similarity between patterns
+     */
+    checkSimilarity(a, b) {
+        if (a.language !== b.language)
+            return null;
+        // Calculate structural similarity
+        const similarity = this.calculateASTSimilarity(a.ast, b.ast);
+        if (similarity >= this.config.minConfidence) {
+            return {
+                source: a.id,
+                target: b.id,
+                relation: 'similarTo',
+                confidence: similarity,
+                evidence: [`Structural similarity: ${(similarity * 100).toFixed(1)}%`],
+            };
+        }
+        return null;
+    }
+    /**
+     * Check if pattern A contains pattern B
+     */
+    checkComposition(a, b) {
+        if (a.language !== b.language)
+            return null;
+        // Check if B's AST structure appears in A's children
+        const contains = this.containsStructure(a.ast, b.ast);
+        if (contains) {
+            return {
+                source: a.id,
+                target: b.id,
+                relation: 'composedOf',
+                confidence: 0.8,
+                evidence: [`Pattern A contains structure of pattern B`],
+            };
+        }
+        return null;
+    }
+    /**
+     * Calculate AST similarity
+     */
+    calculateASTSimilarity(a, b) {
+        if (a.type !== b.type)
+            return 0;
+        let matches = 1;
+        let total = 1;
+        // Compare children
+        const maxChildren = Math.max(a.children.length, b.children.length);
+        const minChildren = Math.min(a.children.length, b.children.length);
+        total += maxChildren;
+        matches += minChildren;
+        // Recursively compare matching children
+        for (let i = 0; i < minChildren; i++) {
+            const childSim = this.calculateASTSimilarity(a.children[i], b.children[i]);
+            matches += childSim;
+            total += 1;
+        }
+        return matches / total;
+    }
+    /**
+     * Check if AST A contains structure B
+     */
+    containsStructure(a, b) {
+        if (a.type === b.type && this.calculateASTSimilarity(a, b) > 0.9) {
+            return true;
+        }
+        for (const child of a.children) {
+            if (this.containsStructure(child, b)) {
+                return true;
+            }
+        }
+        return false;
+    }
+    /**
+     * Add relationship triple to store
+     */
+    addRelationshipTriple(rel) {
+        const sourceUri = this.getPatternUri(rel.source);
+        const targetUri = this.getPatternUri(rel.target);
+        const predicateUri = `${NS.pattern}${rel.relation}`;
+        this.store.addTriple({
+            subject: sourceUri,
+            predicate: predicateUri,
+            object: targetUri,
+        });
+        // Add confidence as annotation
+        this.store.addTriple({
+            subject: `${sourceUri}_${rel.relation}_${targetUri}`,
+            predicate: `${NS.pattern}confidence`,
+            object: String(rel.confidence),
+        });
+    }
+    /**
+     * Apply inference rules
+     */
+    applyInference() {
+        // Get all triples
+        const results = this.store.query({});
+        const triples = results.map(r => ({
+            subject: r.subject,
+            predicate: r.predicate,
+            object: r.object,
+        }));
+        // Apply rules
+        const { triples: inferred, stats } = this.ruleEngine.applyRules(triples);
+        // Add new triples
+        for (const triple of inferred) {
+            if (!this.store.has(triple)) {
+                this.store.addTriple(triple);
+            }
+        }
+        return stats;
+    }
+    /**
+     * Query patterns by criteria
+     */
+    queryPatterns(criteria) {
+        const results = [];
+        const relationships = [];
+        // Build query pattern
+        const patterns = [];
+        if (criteria.language) {
+            const langResults = this.store.query({
+                predicate: `${NS.pattern}language`,
+                object: criteria.language,
+            });
+            patterns.push(...langResults.map(r => r.subject));
+        }
+        if (criteria.astType) {
+            const typeResults = this.store.query({
+                predicate: `${NS.pattern}astType`,
+                object: criteria.astType,
+            });
+            patterns.push(...typeResults.map(r => r.subject));
+        }
+        // Get unique pattern URIs
+        const patternUris = patterns.length > 0
+            ? [...new Set(patterns)]
+            : this.store.getSubjectsOfType(`${NS.pattern}Pattern`);
+        // Retrieve patterns from cache
+        for (const uri of patternUris) {
+            const id = this.getPatternIdFromUri(uri);
+            const pattern = this.patternCache.get(id);
+            if (pattern) {
+                // Apply frequency filter
+                if (criteria.minFrequency && pattern.frequency < criteria.minFrequency) {
+                    continue;
+                }
+                results.push(pattern);
+            }
+        }
+        // Get relationships if requested
+        if (criteria.hasRelation && criteria.relatedTo) {
+            const relResults = this.store.query({
+                predicate: `${NS.pattern}${criteria.hasRelation}`,
+                object: this.getPatternUri(criteria.relatedTo),
+            });
+            for (const r of relResults) {
+                relationships.push({
+                    source: this.getPatternIdFromUri(r.subject),
+                    target: criteria.relatedTo,
+                    relation: criteria.hasRelation,
+                    confidence: 1.0,
+                });
+            }
+        }
+        return { patterns: results, relationships };
+    }
+    /**
+     * Find related patterns
+     */
+    findRelatedPatterns(patternId, relation) {
+        const patternUri = this.getPatternUri(patternId);
+        const relationships = [];
+        const relations = relation
+            ? [relation]
+            : ['subsumes', 'specializes', 'similarTo', 'composedOf', 'usedWith', 'derivedFrom'];
+        for (const rel of relations) {
+            // Outgoing relationships
+            const outgoing = this.store.query({
+                subject: patternUri,
+                predicate: `${NS.pattern}${rel}`,
+            });
+            for (const r of outgoing) {
+                relationships.push({
+                    source: patternId,
+                    target: this.getPatternIdFromUri(r.object),
+                    relation: rel,
+                    confidence: 1.0,
+                });
+            }
+            // Incoming relationships
+            const incoming = this.store.query({
+                predicate: `${NS.pattern}${rel}`,
+                object: patternUri,
+            });
+            for (const r of incoming) {
+                relationships.push({
+                    source: this.getPatternIdFromUri(r.subject),
+                    target: patternId,
+                    relation: rel,
+                    confidence: 1.0,
+                });
+            }
+        }
+        return relationships;
+    }
+    /**
+     * Get pattern URI
+     */
+    getPatternUri(id) {
+        return `${NS.pattern}${id}`;
+    }
+    /**
+     * Extract pattern ID from URI
+     */
+    getPatternIdFromUri(uri) {
+        return uri.replace(NS.pattern, '');
+    }
+    /**
+     * Classify AST structure
+     */
+    classifyASTStructure(ast) {
+        const type = ast.type.toLowerCase();
+        if (type.includes('function') || type.includes('method')) {
+            return 'function-like';
+        }
+        if (type.includes('class') || type.includes('interface')) {
+            return 'type-definition';
+        }
+        if (type.includes('if') || type.includes('switch') || type.includes('conditional')) {
+            return 'conditional';
+        }
+        if (type.includes('for') || type.includes('while') || type.includes('loop')) {
+            return 'loop';
+        }
+        if (type.includes('try') || type.includes('catch')) {
+            return 'error-handling';
+        }
+        if (type.includes('import') || type.includes('export')) {
+            return 'module';
+        }
+        return 'other';
+    }
+    /**
+     * Calculate AST complexity
+     */
+    calculateComplexity(ast) {
+        let complexity = 1;
+        for (const child of ast.children) {
+            complexity += this.calculateComplexity(child);
+        }
+        // Bonus for certain node types
+        if (ast.type.includes('If') || ast.type.includes('Loop') || ast.type.includes('Try')) {
+            complexity += 1;
+        }
+        return complexity;
+    }
+    /**
+     * Export pattern graph as Turtle
+     */
+    async exportAsTurtle() {
+        return this.store.exportTurtle({
+            pattern: NS.pattern,
+            sdd: NS.sdd,
+            rdf: NS.rdf,
+            rdfs: NS.rdfs,
+            owl: NS.owl,
+        });
+    }
+    /**
+     * Get statistics
+     */
+    getStats() {
+        const patterns = this.store.getSubjectsOfType(`${NS.pattern}Pattern`);
+        let relationshipCount = 0;
+        const relations = ['subsumes', 'specializes', 'similarTo', 'composedOf', 'usedWith', 'derivedFrom'];
+        for (const rel of relations) {
+            relationshipCount += this.store.query({ predicate: `${NS.pattern}${rel}` }).length;
+        }
+        return {
+            patternCount: patterns.length,
+            tripleCount: this.store.size,
+            relationshipCount,
+        };
+    }
+}
+//# sourceMappingURL=pattern-bridge.js.map

package/dist/integration/pattern-bridge.js.map

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package/dist/privacy/index.d.ts

@@ -0,0 +1,6 @@
+/**
+ * @fileoverview Privacy protection module
+ * @traceability TSK-ONTO-008
+ */
+export { OntologyPrivacyGuard } from './privacy-guard.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/privacy/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/privacy/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC"}

package/dist/privacy/index.js

@@ -0,0 +1,6 @@
+/**
+ * @fileoverview Privacy protection module
+ * @traceability TSK-ONTO-008
+ */
+export { OntologyPrivacyGuard } from './privacy-guard.js';
+//# sourceMappingURL=index.js.map

package/dist/privacy/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/privacy/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC"}

package/dist/privacy/privacy-guard.d.ts

@@ -0,0 +1,43 @@
+/**
+ * @fileoverview Privacy guard for ontology store
+ * @traceability TSK-ONTO-008, REQ-ONTO-001-F008
+ */
+/**
+ * Privacy guard configuration
+ */
+export interface PrivacyGuardConfig {
+    /** Block all external network calls */
+    blockExternalCommunication: boolean;
+    /** Allow only local file system storage */
+    localStorageOnly: boolean;
+}
+/**
+ * Privacy guard to ensure ontology data stays local
+ *
+ * @description
+ * - All data stored locally only
+ * - No external network communication
+ * - Enforces local-first architecture
+ */
+export declare class OntologyPrivacyGuard {
+    private config;
+    constructor(config?: Partial<PrivacyGuardConfig>);
+    /**
+     * Check if external communication is blocked
+     */
+    isExternalCommunicationBlocked(): boolean;
+    /**
+     * Check if storage is local only
+     */
+    isLocalStorageOnly(): boolean;
+    /**
+     * Validate storage path is local
+     */
+    validateStoragePath(path: string): boolean;
+    /**
+     * Assert privacy constraints
+     * @throws Error if constraints are violated
+     */
+    assertPrivacyConstraints(storagePath: string): void;
+}
+//# sourceMappingURL=privacy-guard.d.ts.map

package/dist/privacy/privacy-guard.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"privacy-guard.d.ts","sourceRoot":"","sources":["../../src/privacy/privacy-guard.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH;;GAEG;AACH,MAAM,WAAW,kBAAkB;IACjC,uCAAuC;IACvC,0BAA0B,EAAE,OAAO,CAAC;IACpC,2CAA2C;IAC3C,gBAAgB,EAAE,OAAO,CAAC;CAC3B;AAED;;;;;;;GAOG;AACH,qBAAa,oBAAoB;IAC/B,OAAO,CAAC,MAAM,CAAqB;gBAEvB,MAAM,GAAE,OAAO,CAAC,kBAAkB,CAAM;IAOpD;;OAEG;IACH,8BAA8B,IAAI,OAAO;IAIzC;;OAEG;IACH,kBAAkB,IAAI,OAAO;IAI7B;;OAEG;IACH,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAe1C;;;OAGG;IACH,wBAAwB,CAAC,WAAW,EAAE,MAAM,GAAG,IAAI;CAKpD"}

package/dist/privacy/privacy-guard.js

@@ -0,0 +1,59 @@
+/**
+ * @fileoverview Privacy guard for ontology store
+ * @traceability TSK-ONTO-008, REQ-ONTO-001-F008
+ */
+/**
+ * Privacy guard to ensure ontology data stays local
+ *
+ * @description
+ * - All data stored locally only
+ * - No external network communication
+ * - Enforces local-first architecture
+ */
+export class OntologyPrivacyGuard {
+    config;
+    constructor(config = {}) {
+        this.config = {
+            blockExternalCommunication: config.blockExternalCommunication ?? true,
+            localStorageOnly: config.localStorageOnly ?? true,
+        };
+    }
+    /**
+     * Check if external communication is blocked
+     */
+    isExternalCommunicationBlocked() {
+        return this.config.blockExternalCommunication;
+    }
+    /**
+     * Check if storage is local only
+     */
+    isLocalStorageOnly() {
+        return this.config.localStorageOnly;
+    }
+    /**
+     * Validate storage path is local
+     */
+    validateStoragePath(path) {
+        if (!this.config.localStorageOnly)
+            return true;
+        // Block remote paths
+        const remotePatterns = [
+            /^https?:\/\//i,
+            /^s3:\/\//i,
+            /^gs:\/\//i,
+            /^azure:\/\//i,
+            /^ftp:\/\//i,
+        ];
+        return !remotePatterns.some(pattern => pattern.test(path));
+    }
+    /**
+     * Assert privacy constraints
+     * @throws Error if constraints are violated
+     */
+    assertPrivacyConstraints(storagePath) {
+        if (!this.validateStoragePath(storagePath)) {
+            throw new Error(`Privacy violation: Remote storage path not allowed: ${storagePath}`);
+        }
+    }
+}
+//# sourceMappingURL=privacy-guard.js.map

package/dist/privacy/privacy-guard.js.map

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package/dist/store/index.d.ts

@@ -0,0 +1,7 @@
+/**
+ * @fileoverview Ontology store module
+ * @traceability TSK-ONTO-001
+ */
+export { OntologyStore } from './ontology-store.js';
+export { N3Store, type QueryPattern, type N3QueryResult, type InferenceRule } from './n3-store.js';
+//# sourceMappingURL=index.d.ts.map