@mycelish/cli 0.1.0

package/dist/commands/disable.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/disable.js

@@ -0,0 +1,201 @@
+/**
+ * Disable Command Module
+ *
+ * Disable a skill or MCP globally or for a specific tool:
+ * - mycelium disable <name>              # Disable skill/MCP at project level
+ * - mycelium disable <name> --global     # Disable skill/MCP globally
+ * - mycelium disable <name> --tool <id>  # Disable skill/MCP for specific tool only
+ */
+import { Command } from "commander";
+import * as fs from "node:fs/promises";
+import * as path from "node:path";
+import { parse as yamlParse, stringify as yamlStringify } from "yaml";
+import { TOOL_REGISTRY, ALL_TOOL_IDS, expandPath } from "@mycelish/core";
+// ============================================================================
+// Helper Functions
+// ============================================================================
+/**
+ * Load manifest from a path
+ */
+async function loadManifest(manifestDir) {
+    const manifestPath = path.join(manifestDir, "manifest.yaml");
+    try {
+        const content = await fs.readFile(manifestPath, "utf-8");
+        return yamlParse(content);
+    }
+    catch {
+        return null;
+    }
+}
+/**
+ * Save manifest to a path
+ */
+async function saveManifest(manifestDir, manifest) {
+    const manifestPath = path.join(manifestDir, "manifest.yaml");
+    const content = yamlStringify(manifest);
+    await fs.writeFile(manifestPath, content, "utf-8");
+}
+/**
+ * Check if a tool ID is valid
+ */
+function isValidToolId(toolId) {
+    return toolId in TOOL_REGISTRY;
+}
+/**
+ * Find what type an item is (skill or MCP)
+ */
+function findItemType(manifest, name) {
+    if (manifest.skills && name in manifest.skills) {
+        return { type: "skill", config: manifest.skills[name] };
+    }
+    if (manifest.mcps && name in manifest.mcps) {
+        return { type: "mcp", config: manifest.mcps[name] };
+    }
+    return null;
+}
+/**
+ * Check if item is already disabled (globally or for a specific tool)
+ */
+function isAlreadyDisabled(config, tool) {
+    if (tool) {
+        // Check tool-specific disablement
+        if (config.excludeTools?.includes(tool)) {
+            return true;
+        }
+        // If tools array exists and doesn't include this tool, it's effectively disabled
+        if (config.tools && !config.tools.includes(tool)) {
+            return true;
+        }
+        return false;
+    }
+    // Check global disablement
+    return config.enabled === false;
+}
+// ============================================================================
+// Core Disable Function
+// ============================================================================
+/**
+ * Disable a skill or MCP
+ */
+export async function disableSkillOrMcp(options) {
+    const { name, tool, global: isGlobal } = options;
+    // Validate tool if provided
+    if (tool && !isValidToolId(tool)) {
+        return {
+            success: false,
+            name,
+            error: `Invalid tool: ${tool}. Supported tools: ${ALL_TOOL_IDS.join(", ")}`,
+        };
+    }
+    // Determine which manifest to use
+    const manifestDir = isGlobal
+        ? options.globalPath || expandPath("~/.mycelium")
+        : options.projectPath || path.join(process.cwd(), ".mycelium");
+    // Load manifest
+    const manifest = await loadManifest(manifestDir);
+    if (!manifest) {
+        return {
+            success: false,
+            name,
+            error: `Could not load manifest from ${manifestDir}`,
+        };
+    }
+    // Find the item (skill or MCP)
+    const item = findItemType(manifest, name);
+    if (!item) {
+        return {
+            success: false,
+            name,
+            error: `'${name}' not found in manifest (checked skills and mcps)`,
+        };
+    }
+    const { type, config } = item;
+    const level = isGlobal ? "global" : "project";
+    // Check if already disabled
+    if (isAlreadyDisabled(config, tool)) {
+        const toolMsg = tool ? ` for ${tool}` : "";
+        return {
+            success: true,
+            name,
+            type,
+            level,
+            tool,
+            alreadyDisabled: true,
+            message: `${type} '${name}' is already disabled${toolMsg}`,
+        };
+    }
+    // Disable the item
+    if (tool) {
+        // Disable for specific tool
+        // Add to excludeTools
+        if (!config.excludeTools) {
+            config.excludeTools = [];
+        }
+        if (!config.excludeTools.includes(tool)) {
+            config.excludeTools.push(tool);
+        }
+        // Remove from tools array if present
+        if (config.tools) {
+            config.tools = config.tools.filter((t) => t !== tool);
+        }
+        // Remove from enabledTools if present
+        if (config.enabledTools) {
+            config.enabledTools = config.enabledTools.filter((t) => t !== tool);
+        }
+    }
+    else {
+        // Disable globally
+        config.enabled = false;
+    }
+    // Update manifest
+    if (type === "skill") {
+        if (!manifest.skills)
+            manifest.skills = {};
+        manifest.skills[name] = config;
+    }
+    else {
+        if (!manifest.mcps)
+            manifest.mcps = {};
+        manifest.mcps[name] = config;
+    }
+    // Save manifest
+    await saveManifest(manifestDir, manifest);
+    // Build success message
+    const toolMsg = tool ? ` for ${tool}` : "";
+    return {
+        success: true,
+        name,
+        type,
+        level,
+        tool,
+        message: `${type} '${name}' disabled${toolMsg}`,
+    };
+}
+// ============================================================================
+// Commander.js Command
+// ============================================================================
+export const disableCommand = new Command("disable")
+    .description("Disable a skill or MCP")
+    .argument("<name>", "Name of the skill or MCP to disable")
+    .option("-t, --tool <tool>", "Disable only for a specific tool")
+    .option("-g, --global", "Disable in global configuration (~/.mycelium/)")
+    .action(async (name, options) => {
+    const result = await disableSkillOrMcp({
+        name,
+        tool: options.tool,
+        global: options.global,
+    });
+    if (result.success) {
+        if (result.alreadyDisabled) {
+            console.log(result.message);
+        }
+        else {
+            console.log(`\u2713 ${result.message}`);
+        }
+    }
+    else {
+        console.error(`\u2717 Error: ${result.error}`);
+        process.exit(1);
+    }
+});
+//# sourceMappingURL=disable.js.map

package/dist/commands/disable.js.map

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package/dist/commands/disable.test.d.ts

@@ -0,0 +1,6 @@
+/**
+ * Tests for disable command module
+ * Tests written FIRST following TDD
+ */
+export {};
+//# sourceMappingURL=disable.test.d.ts.map

package/dist/commands/disable.test.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/disable.test.js

@@ -0,0 +1,290 @@
+/**
+ * Tests for disable command module
+ * Tests written FIRST following TDD
+ */
+import { describe, it, expect, beforeEach, afterEach } from "vitest";
+import * as fs from "node:fs/promises";
+import * as path from "node:path";
+import * as os from "node:os";
+import { parse as yamlParse, stringify as yamlStringify } from "yaml";
+// Import the module under test (doesn't exist yet - tests will fail)
+import { disableSkillOrMcp, } from "./disable.js";
+describe("Disable Command", () => {
+    let tempDir;
+    let globalMyceliumPath;
+    // Sample manifest configuration
+    const sampleManifest = {
+        version: "1.0",
+        tools: {
+            "claude-code": { enabled: true },
+            codex: { enabled: true },
+            "gemini-cli": { enabled: true },
+            opencode: { enabled: true },
+            openclaw: { enabled: true },
+            aider: { enabled: true },
+        },
+        skills: {
+            superpowers: {
+                enabled: true,
+            },
+            "disabled-skill": {
+                enabled: false,
+            },
+            "tool-specific-skill": {
+                enabled: true,
+                tools: ["claude-code", "codex"],
+            },
+        },
+        mcps: {
+            "whark-trading": {
+                enabled: true,
+            },
+            "disabled-mcp": {
+                enabled: false,
+            },
+            "tool-specific-mcp": {
+                enabled: true,
+                tools: ["claude-code", "codex"],
+            },
+        },
+        memory: {
+            scopes: {
+                shared: { sync_to: ["claude-code"], path: "global/memory/shared/", files: [] },
+                coding: { sync_to: ["claude-code"], path: "global/memory/coding/", files: [] },
+                personal: { sync_to: ["openclaw"], path: "global/memory/personal/", files: [] },
+            },
+        },
+    };
+    beforeEach(async () => {
+        // Create temp directory for tests
+        tempDir = await fs.mkdtemp(path.join(os.tmpdir(), "mycelium-disable-test-"));
+        globalMyceliumPath = path.join(tempDir, ".mycelium");
+        await fs.mkdir(globalMyceliumPath, { recursive: true });
+        // Write sample manifest
+        await fs.writeFile(path.join(globalMyceliumPath, "manifest.yaml"), yamlStringify(sampleManifest), "utf-8");
+    });
+    afterEach(async () => {
+        await fs.rm(tempDir, { recursive: true, force: true });
+    });
+    describe("disableSkillOrMcp", () => {
+        describe("global disabling", () => {
+            it("disables skill globally", async () => {
+                const options = {
+                    name: "superpowers",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("skill");
+                // Verify manifest was updated
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.skills["superpowers"].enabled).toBe(false);
+            });
+            it("disables MCP globally", async () => {
+                const options = {
+                    name: "whark-trading",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.type).toBe("mcp");
+                // Verify manifest was updated
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.mcps["whark-trading"].enabled).toBe(false);
+            });
+        });
+        describe("tool-specific disabling", () => {
+            it("disables skill for specific tool only", async () => {
+                const options = {
+                    name: "tool-specific-skill",
+                    tool: "claude-code",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.tool).toBe("claude-code");
+                // Verify manifest was updated with tool-specific disablement
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                // Should have excludeTools array or tools array without claude-code
+                const skillConfig = updatedManifest.skills["tool-specific-skill"];
+                const isExcluded = skillConfig.excludeTools?.includes("claude-code") ||
+                    (skillConfig.tools && !skillConfig.tools.includes("claude-code"));
+                expect(isExcluded).toBe(true);
+            });
+            it("disables MCP for specific tool only", async () => {
+                const options = {
+                    name: "tool-specific-mcp",
+                    tool: "codex",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.tool).toBe("codex");
+                // Verify manifest was updated with tool-specific disablement
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                // Should have excludeTools array or tools array without codex
+                const mcpConfig = updatedManifest.mcps["tool-specific-mcp"];
+                const isExcluded = mcpConfig.excludeTools?.includes("codex") ||
+                    (mcpConfig.tools && !mcpConfig.tools.includes("codex"));
+                expect(isExcluded).toBe(true);
+            });
+        });
+        describe("manifest updates", () => {
+            it("updates manifest.yaml with disabled state", async () => {
+                const options = {
+                    name: "superpowers",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                await disableSkillOrMcp(options);
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.skills["superpowers"].enabled).toBe(false);
+            });
+            it("preserves other manifest settings when updating", async () => {
+                const options = {
+                    name: "superpowers",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                await disableSkillOrMcp(options);
+                const manifestContent = await fs.readFile(path.join(globalMyceliumPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                // Other settings should be preserved
+                expect(updatedManifest.version).toBe("1.0");
+                expect(updatedManifest.tools["claude-code"].enabled).toBe(true);
+                expect(updatedManifest.skills["disabled-skill"].enabled).toBe(false);
+                expect(updatedManifest.mcps["whark-trading"].enabled).toBe(true);
+            });
+        });
+        describe("success messages", () => {
+            it("shows success message for skill", async () => {
+                const options = {
+                    name: "superpowers",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.message).toContain("disabled");
+                expect(result.message).toContain("superpowers");
+            });
+            it("shows success message for MCP", async () => {
+                const options = {
+                    name: "whark-trading",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.message).toContain("disabled");
+                expect(result.message).toContain("whark-trading");
+            });
+            it("shows tool-specific success message when --tool is used", async () => {
+                const options = {
+                    name: "tool-specific-skill",
+                    tool: "claude-code",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.message).toContain("claude-code");
+            });
+        });
+        describe("already disabled handling", () => {
+            it("handles already disabled skill case", async () => {
+                const options = {
+                    name: "disabled-skill",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.alreadyDisabled).toBe(true);
+                expect(result.message).toContain("already disabled");
+            });
+            it("handles already disabled MCP case", async () => {
+                const options = {
+                    name: "disabled-mcp",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.alreadyDisabled).toBe(true);
+                expect(result.message).toContain("already disabled");
+            });
+        });
+        describe("project-level disabling", () => {
+            it("disables skill at project level when --global is not set", async () => {
+                // Create project .mycelium directory
+                const projectPath = path.join(tempDir, "project", ".mycelium");
+                await fs.mkdir(projectPath, { recursive: true });
+                // Write project manifest
+                const projectManifest = {
+                    version: "1.0",
+                    skills: {
+                        "project-skill": { enabled: true },
+                    },
+                    mcps: {},
+                };
+                await fs.writeFile(path.join(projectPath, "manifest.yaml"), yamlStringify(projectManifest), "utf-8");
+                const options = {
+                    name: "project-skill",
+                    global: false,
+                    projectPath: projectPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(true);
+                expect(result.level).toBe("project");
+                // Verify project manifest was updated
+                const manifestContent = await fs.readFile(path.join(projectPath, "manifest.yaml"), "utf-8");
+                const updatedManifest = yamlParse(manifestContent);
+                expect(updatedManifest.skills["project-skill"].enabled).toBe(false);
+            });
+        });
+        describe("error handling", () => {
+            it("returns error when manifest file does not exist", async () => {
+                const options = {
+                    name: "some-skill",
+                    global: true,
+                    globalPath: path.join(tempDir, "non-existent"),
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(false);
+                expect(result.error).toContain("manifest");
+            });
+            it("validates name exists in manifest", async () => {
+                const options = {
+                    name: "non-existent-skill",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(false);
+                expect(result.error).toContain("not found");
+            });
+            it("returns error for invalid tool name", async () => {
+                const options = {
+                    name: "superpowers",
+                    tool: "invalid-tool",
+                    global: true,
+                    globalPath: globalMyceliumPath,
+                };
+                const result = await disableSkillOrMcp(options);
+                expect(result.success).toBe(false);
+                expect(result.error).toContain("Invalid tool");
+            });
+        });
+    });
+});
+//# sourceMappingURL=disable.test.js.map

package/dist/commands/disable.test.js.map

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package/dist/commands/doctor.d.ts

@@ -0,0 +1,11 @@
+/**
+ * Doctor Command for Mycelium CLI
+ *
+ * Checks system health and offers to fix issues.
+ * Implementation split into health-checks/ modules.
+ */
+import { Command } from "commander";
+export type { DiagnosticResult, DoctorResult } from "./health-checks/index.js";
+export { checkGlobalMyceliumExists, checkManifestValid, checkToolPathExists, checkBrokenSymlinks, checkMcpConfigJson, checkMcpConfigYaml, checkOrphanedConfigs, checkMcpServerConnectivity, checkMemoryFilesExist, checkMemoryFileSize, checkToolVersions, runAllChecks, formatDoctorOutput, formatDoctorJson, } from "./health-checks/index.js";
+export declare const doctorCommand: Command;
+//# sourceMappingURL=doctor.d.ts.map

package/dist/commands/doctor.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/doctor.js

@@ -0,0 +1,33 @@
+/**
+ * Doctor Command for Mycelium CLI
+ *
+ * Checks system health and offers to fix issues.
+ * Implementation split into health-checks/ modules.
+ */
+import { Command } from "commander";
+import { runAllChecks, formatDoctorOutput, formatDoctorJson, } from "./health-checks/index.js";
+export { checkGlobalMyceliumExists, checkManifestValid, checkToolPathExists, checkBrokenSymlinks, checkMcpConfigJson, checkMcpConfigYaml, checkOrphanedConfigs, checkMcpServerConnectivity, checkMemoryFilesExist, checkMemoryFileSize, checkToolVersions, runAllChecks, formatDoctorOutput, formatDoctorJson, } from "./health-checks/index.js";
+export const doctorCommand = new Command("doctor")
+    .description("Check system health and diagnose issues")
+    .option("-j, --json", "Output as JSON")
+    .option("-f, --fix", "Attempt to fix issues automatically")
+    .action(async (options) => {
+    try {
+        const result = await runAllChecks();
+        if (options.json) {
+            console.log(formatDoctorJson(result));
+        }
+        else {
+            console.log(formatDoctorOutput(result));
+        }
+        // Exit with non-zero if checks failed
+        if (!result.success) {
+            process.exit(1);
+        }
+    }
+    catch (error) {
+        console.error("Error running doctor:", error instanceof Error ? error.message : String(error));
+        process.exit(1);
+    }
+});
+//# sourceMappingURL=doctor.js.map

package/dist/commands/doctor.js.map

@@ -0,0 +1 @@
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package/dist/commands/doctor.test.d.ts

@@ -0,0 +1,17 @@
+/**
+ * Tests for doctor command - written FIRST following TDD
+ *
+ * The doctor command checks system health and offers to fix issues:
+ * - Checks if global mycelium dir exists
+ * - Checks if manifest.yaml is valid
+ * - Checks if each configured tool path exists
+ * - Detects broken symlinks
+ * - Validates MCP config JSON syntax
+ * - Validates MCP config YAML syntax
+ * - Reports all issues found
+ * - Shows green checkmarks for passing checks
+ * - Shows red X for failing checks
+ * - Offers fix suggestions
+ */
+export {};
+//# sourceMappingURL=doctor.test.d.ts.map

package/dist/commands/doctor.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor.test.d.ts","sourceRoot":"","sources":["../../src/commands/doctor.test.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG"}