@mutagent/helix 0.1.0-alpha.14

package/mutagent-evaluator/CLAUDE.md

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+# mutagent-evaluator/ — skill navigation map
+
+> Lean map of THIS agent's internals. Repo-wide conventions live in `../CLAUDE.md`.
+> **PUBLISHED (alpha):** `@mutagent/evaluator` is live on npm (0.1.0-alpha.4, tag `evaluator-v0.1.0-alpha.4`, 2026-07-10). Pre-release/alpha — still hardening; real-run verification gate (KP-009) ongoing.
+
+**What it is:** a generic, subject-agnostic AUDITOR agent. Given a YAML "subject profile",
+it scores two requirement families — **conformance** (eval matrix) + **methodology-fitness**
+(MR-1..9: signal-selection, confidence-derivation, focus, …) — and emits a 4-tab report.
+Self-contained: workflows ported IN; own Mutagent brand.
+
+## Where things live
+
+| Path | What |
+|---|---|
+| `.claude/skills/mutagent-evaluator/SKILL.md` | Canonical operational contract — frontmatter + §0 setup + §0.1 the 8 `*commands` + §3.1 verdict/scorecard shape + §9 criterion taxonomy. **Read first.** |
+| `.claude/skills/mutagent-evaluator/assets/agents/evaluator.md` | The unified v2 eval-DEVELOPMENT cell (pure_subagent_executor) — ONE agent, three dispatch modes: `#mode-discover` (fan-out worker) · `#mode-judge-trajectory` (headline) · `#mode-judge-criterion` (per-criterion judge). |
+| `.claude/skills/mutagent-evaluator/assets/agents/dataset-builder.md` | The `*build-dataset` GENERATOR (EV-046, pure_subagent_executor) — tuples → NL queries → realism filter; not a judge. |
+| `.claude/skills/mutagent-evaluator/assets/agents/audit-executor.md` | The v1 `*audit` SURFACE executor (re-homed from the former mis-placed `.claude/agents/`; executor ≠ reviewer; pinned LLM-judge). |
+| `references/{error-analysis,write-judge-prompt,validate-evaluator}.md` | The 3 CORE eval-dev references (each cites its evals-skills-source). Load-on-demand. |
+| `references/methodology.md` | The v1 two requirement families + MR-1..9 + two-track rollup (GATE + variance TREND). Under `*audit`. |
+| `.claude/skills/mutagent-evaluator/.meta/requirements.yaml` | Intent registry (EV-REQ-001..025 hub). **INTERNAL** — Design/Build log, stripped on publish. Moved here from `references/`. |
+| `schemas/*.schema.yaml` | Subject-profile + eval-matrix + behavior-tree + methodology-review shapes. |
+| `lenses/*.md` | Per-dimension judging lenses (the "how to score" rubrics). |
+| `subjects/<name>/{eval-matrix,behavior-tree,methodology-review}.yaml` | A concrete subject's criteria. `mutagent-diagnostics/` is the worked example (132 criteria). |
+| `workflows/{audit,data-leak,variance}.workflow.js` | Self-contained orchestration (ported IN — no cross-skill ref). |
+| `scripts/*` | Deterministic scorers + rollup (v1 audit world) + the v2 eval-dev engine. |
+| `scripts/{read-unitf-traces,unitf-to-evaltrace}.ts` | **P1 (intake)** — THE trace intake. Read the handed-over UniTF `.jsonl` (`mutagent-cli trace fetch --export` output) → `EvalTrace[]` via `projectUnitfToEvalTrace`. The skill NEVER fetches (fetch/normalize live in `mutagent-cli`; `mutagent-cli trace --help`). |
+| `scripts/{source-map,aggregate-discover}.ts` | **P2 (§5a)** — `*discover` topology artifact + real PREP→AGGREGATE (leaf verdicts → `MinedCriterion` §5b metadata + §5c DR-2 → living suite). |
+| `scripts/{code-eval,check-method-router}.ts` | **P3 (EX-2)** — code-track primitive lib + the `check_method` router (deterministic→code · llm-judge→judge · hybrid→code-then-judge; zero judge tokens on code rows). |
+| `scripts/config/{schema.ts,load.ts}` | **Config-loader (v0.2.0)** — reads the unified `.mutagent/config.yaml`: SOURCE bound BY ROLE from `global.sources[]` (single auto-binds), judge model from `global.models.{judge_model,default}`, `lifecycle.evaluator.{context,judge_runtime}`, `global.context[]`. Legacy → `migration-required`. Source/target schema is a PARITY PORT of the orchestrator's (never cross-imported). `substrate`→`judge_runtime`, `models.pinned_judge`→`models.judge_model` (v0.2.0). |
+| `scripts/memory/{read,append}.ts` + `references/memory-format.md` | **Project-level AutoMemory** — read `.mutagent/memory/` filtered by `lifecycle ∈ {evaluate, general}` at run start; append dated + classified entries on operator feedback. Claude-Code AutoMemory format (dated, lifecycle-tagged); COMMITTED, no subject-private data. |
+| `scripts/substrate.ts` | Judge-runtime selection — `resolveJudgeRuntime`/`judgeForRuntime` (renamed from `resolveSubstrate`/`judgeForSubstrate` in v0.2.0; enum VALUES unchanged). DEFAULT agent-dispatch. |
+| `scripts/run-evaluate.ts` | **P5** — the real `*evaluate` end-to-end composer (prep packet → dispatch → fail-loud readiness gate → GATE+variance → EV-051 route → **render `evaluation-report.html`**; masked scorecard byte-identical). `writeRunReport` invokes the renderer post-aggregate. Composes `matrix-judge.ts`/`evaluate.ts` (untouched). |
+| `scripts/render-eval-report.ts` | **P4 (D-1/2/3)** — v2 reporting: terminal eval-cards + the operator-APPROVED 5-tab HTML eval-report (Overview · Trajectory‖Judge side-by-side · Eval Scorecard heatmap+calibration · Findings verbatim-evidence · Self-Eval [INTERNAL]). `buildEvalReportInput` derives the rich tabs from real run data; consumes the §9.4 judge-walk fields when present, degrades gracefully otherwise. v1 `render-report.ts` untouched. |
+| `assets/brand/` | Mutagent brand (shared visual identity with diagnostics). |
+| `scripts/release/sim-all.ts` + `scripts/release/SIM-HARNESS.md` | **Dev SIM harness (not shipped).** Re-runnable smoke/integration sim of the 5 AUTONOMOUS commands (`*discover`/`*evaluate`/`*validate`/`*audit`/`*self-audit`) over a small synthetic fixture: PREP+AGGREGATE real, LLM judge-leaf stubbed (real-leaf-shaped verdict files), both HTML renders render-checked (static always · headless playwright when resolvable). Excludes the interactive `*build-evals`/`*build-datasets`/`*review`. Guard test: `tests/sim-all.test.ts`. Run: `bash scripts/cli/run.sh scripts/release/sim-all.ts`. |
+
+## How a run flows
+`subject profile (YAML) → audit.workflow (conformance + methodology lenses, pinned judge) → two-track rollup (severity-gated GATE · 15-dim variance TREND) → 4-tab report`.
+
+## Invariants
+- **C-PIN**: LLM-judge model+temp pinned (determinism); behavioral rows judged, the rest deterministic.
+- Executor ≠ reviewer (no self-grading).
+- Generic: behavior lives in the subject YAML, never hard-coded in the agent.
+- NDA: synthetic subjects only. · Authored dev artifacts moved into the internal `.meta/` log (stripped on publish): `.claude/skills/mutagent-evaluator/.meta/` holds `mutagent-evaluator-PRD.{html,gen.mjs}` + `requirements.yaml`. The shared `eval-suite-design.*` set lives in the diagnostics skill's `.meta/`. Generated skill-map / skill-overview / wave-dashboard / requirements HTML are EPHEMERAL renders → gitignored under `../.memory/features/mutagent-evaluator/` (+ `.gen-scratch/`); regenerate, never commit.

package/mutagent-evaluator/LICENSE

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package/mutagent-evaluator/NOTICE

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+@mutagent/evaluator
+Copyright 2026 MutagenT
+
+This product is licensed under the Apache License, Version 2.0 (the "License");
+you may not use this product except in compliance with the License. You may
+obtain a copy of the License in the accompanying LICENSE file or at:
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+specific language governing permissions and limitations under the License.
+
+----------------------------------------------------------------------------
+
+This package is SELF-CONTAINED: it bundles the audit + variance-reduction
+workflows it needs (workflows/), the generic pinned-judge lenses (lenses/), the
+distilled methodology (references/methodology.md), the Mutagent brand asset
+(assets/brand/), and the first subject profile (subjects/mutagent-diagnostics/)
+— all authored by MutagenT and distributed under the same Apache-2.0 License.
+The bundled subject profile contains SYNTHETIC subject identifiers only; no
+production dataset is named in any shipped file.

package/mutagent-evaluator/README.md

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+# @mutagent/evaluator
+
+A **generic, subject-agnostic** AI-agent **auditor** — a **reviewer, never the
+executor**. It verifies that a skill or agent did what it should, **repeatably**,
+operator-out-of-loop, and emits a **4-tab master-audit report**.
+
+The evaluator ships **zero** subject-specific logic. Everything skill-specific
+lives in a generated **subject profile** under `subjects/<name>/`. The
+`mutagent-diagnostics` profile (132 criteria · 70 components) is simply the
+first one; the same agent profiles and audits any other subject the same way.
+
+---
+
+## Install
+
+```bash
+pnpx @mutagent/evaluator --help
+```
+
+## The three modes
+
+| Mode | Command | What |
+|------|---------|------|
+| **A — Audit Run** | `pnpx @mutagent/evaluator audit-run <runId> --subject <name>` | Loads `subjects/<name>/` + a run-bundle → the 4-tab report + a two-track scorecard. |
+| **B — Profile Subject** | `pnpx @mutagent/evaluator profile-subject <def> <traces> --name <name>` | GENERATES `subjects/<name>/{eval-matrix,behavior-tree,methodology-review}.yaml` + an interesting-dataset shortlist. This is how a matrix is born — generated, not embedded. |
+| **C — Methodology Review** | `pnpx @mutagent/evaluator methodology-review <runId> --subject <name>` | Process self-feedback — is the methodology the right/efficient choice + how to rearrange (advisory). |
+| **coordinator** | `pnpx @mutagent/evaluator variance-check <bundleA> <bundleB>` | Compare 2 variants → delta + 15-dim determinism trend. Executor ≠ reviewer. |
+
+## How it works
+
+### Two-track rollup (never merged)
+
+- **Track-1 GATE** — binary, severity-gated. Component PASS iff **0 CRIT/HIGH
+  fail**; run PASS iff all components pass.
+- **Track-2 TREND** — the 15-dimension determinism variance score, **separate**.
+
+### Deterministic vs pinned judge
+
+The split is a pure function of each criterion's `checkMethod`:
+
+- **Deterministic** (no model): `deterministic-script` · `typebox-schema` ·
+  `gate`.
+- **Pinned judge** (model id + temperature=0, recorded; output masked):
+  `trace-cross-ref` · `trajectory-diff` — reads the transcript against the
+  subject's `behavior-tree.yaml`.
+
+### Byte-identity
+
+The audit is itself deterministic. `runId` / timestamps / absolute paths are
+masked (`scripts/mask.ts`, a versioned set) so two audits on one bundle produce a
+**byte-identical** scorecard.
+
+## Package layout
+
+```
+mutagent-evaluator/
+├─ .claude/skills/mutagent-evaluator/
+│  ├─ SKILL.md                            # operational contract (eval-dev engine + *audit surface; standalone OR borrowed by skill-builder SIMULATE)
+│  ├─ assets/agents/
+│  │  ├─ evaluator.md                     # unified v2 cell — discover / judge-trajectory / judge-criterion modes (critique-before-verdict, C-PIN)
+│  │  ├─ dataset-builder.md               # *build-dataset GENERATOR (EV-046) — tuples → NL queries → realism filter
+│  │  └─ audit-executor.md                # v1 *audit surface executor (re-homed from the former .claude/agents/)
+│  └─ .meta/design-principles.md          # the Constitution — block-organized Design Principles
+├─ references/
+│  ├─ error-analysis.md                   # *discover — 7-step error analysis → emergent criteria
+│  ├─ write-judge-prompt.md               # *build-evals — 4-component judge, critique-before-verdict, binary
+│  ├─ validate-evaluator.md               # *validate — TPR/TNR · Rogan-Gladen · bootstrap CI
+│  └─ methodology.md                      # v1 determinism-control reference (under *audit; principles.md redirects → .meta)
+├─ schemas/                               # the 4 shape contracts (YAML)
+├─ lenses/                                # generic pinned-judge prompts
+├─ workflows/                             # audit · data-leak · variance (self-contained)
+├─ scripts/                               # the generic engine (TypeScript)
+├─ subjects/mutagent-diagnostics/         # the FIRST subject profile (data, not code)
+└─ assets/brand/                          # self-contained Mutagent brand (theme + wordmark)
+```
+
+## Self-containment
+
+The evaluator takes IN everything it needs: the ported audit + variance
+workflows, the distilled methodology, and the Mutagent brand asset all live
+inside this package. It references **no SOURCE file** under `mutagent-diagnostics/`
+(or any other `mutagent-system/*` package) — the source stays sealed. It does, however,
+**ACCEPT `.mutagent/diagnostics/{runId}/` as a runtime INPUT bundle directory** (the
+run-bundle data it audits) — that is data fed in at audit time, not a source reference.
+
+## License
+
+Apache-2.0. See `LICENSE` + `NOTICE`.