@murphai/murph 1.2.0 → 1.2.4

package/node_modules/@murphai/query/dist/experiment-progress-card.js

@@ -1,5 +1,7 @@
 import { EXPERIMENT_PROGRESS_CARD_DAY_CODES, EXPERIMENT_PROGRESS_CARD_MAX_CONFOUNDERS, EXPERIMENT_PROGRESS_CARD_MAX_MOVERS, EXPERIMENT_PROGRESS_CARD_MAX_WEEKS, EXPERIMENT_PROGRESS_CARD_VERSION, experimentProgressCardSchema, } from "@murphai/contracts";
+import { resolveBiomarkerChangeSentiment } from "./biomarker-change-sentiment.js";
 import { resolveExperimentAdherenceRollupTarget } from "./experiment-adherence.js";
+import { resolveExperimentMetricIdentity } from "./experiment-metrics.js";
 import { collectExperimentAdherenceCalendar, summarizeExperimentProgress, } from "./experiments.js";
 const DAY_CODES = EXPERIMENT_PROGRESS_CARD_DAY_CODES;
 export function buildExperimentProgressCard(vault, slug, options = {}) {
@@ -26,7 +28,7 @@ export function buildExperimentProgressCard(vault, slug, options = {}) {
         phase: buildCardPhase(runStart, windowEnd, asOf),
         sessions: buildCardSessions(progress.adherence),
         weeks: buildCardWeeks({ asOf, calendar, runStart, warnings, windowEnd, windows }),
-        movers: buildCardMovers(progress.signals, warnings),
+        movers: buildCardMovers(progress.signals, options.biomarkerDesiredDirections ?? [], warnings),
         confounders: clampCardConfounders(options.confounders ?? [], warnings),
     });
     return { card, warnings };
@@ -43,8 +45,12 @@ function buildCardPhase(runStart, windowEnd, asOf) {
     return { day, totalDays };
 }
 function buildCardSessions(adherence) {
+    const loggedSessions = adherence.loggedSessions ??
+        adherence.completedSessions + (adherence.partialSessions ?? 0);
+    const assumedSessions = adherence.assumedSessions ?? 0;
     return {
-        logged: Math.max(0, adherence.completedSessions),
+        logged: Math.max(0, loggedSessions),
+        ...(assumedSessions > 0 ? { assumed: assumedSessions } : {}),
         target: adherence.targetSessions !== null && adherence.targetSessions >= 1
             ? adherence.targetSessions
             : null,
@@ -108,12 +114,16 @@ function resolveDayCode(input) {
         return input.date > input.asOf ? DAY_CODES.scheduled : DAY_CODES.noEvidence;
     }
     const satisfied = countStatuses(statuses, "satisfied");
+    const assumed = countStatuses(statuses, "assumed");
     const partial = countStatuses(statuses, "partial");
     const missedOrFailed = countStatuses(statuses, "missed") + countStatuses(statuses, "failed");
     if (satisfied === statuses.length) {
         return DAY_CODES.completed;
     }
-    if (satisfied > 0 || partial > 0) {
+    if (assumed === statuses.length) {
+        return DAY_CODES.assumed;
+    }
+    if (satisfied > 0 || assumed > 0 || partial > 0) {
         return DAY_CODES.partial;
     }
     if (missedOrFailed > 0) {
@@ -127,9 +137,17 @@ function resolveDayCode(input) {
 function countStatuses(statuses, status) {
     return statuses.filter((candidate) => candidate === status).length;
 }
-function buildCardMovers(signals, warnings) {
+function buildCardMovers(signals, biomarkerDesiredDirections, warnings) {
     const candidates = [];
+    const seenMetricIdentities = new Set();
+    let duplicateMetricCount = 0;
     for (const signal of signals) {
+        const metricIdentity = resolveExperimentMetricIdentity(signal.biomarkerKey).metricKey;
+        if (seenMetricIdentities.has(metricIdentity)) {
+            duplicateMetricCount += 1;
+            continue;
+        }
+        seenMetricIdentities.add(metricIdentity);
         if (signal.completeness === "insufficient" ||
             signal.baselineMean === null ||
             signal.baselineMean === 0 ||
@@ -148,39 +166,56 @@ function buildCardMovers(signals, warnings) {
             signal,
         });
     }
-    const skippedCount = signals.length - candidates.length;
+    const skippedCount = signals.length - candidates.length - duplicateMetricCount;
     if (skippedCount > 0) {
         warnings.push(`${skippedCount} metric(s) skipped as movers (missing baseline mean or insufficient data)`);
     }
+    if (duplicateMetricCount > 0) {
+        warnings.push(`${duplicateMetricCount} alias-equivalent metric(s) skipped as duplicate movers`);
+    }
     const ranked = [...candidates].sort((left, right) => right.normalizedMove - left.normalizedMove);
     if (ranked.length > EXPERIMENT_PROGRESS_CARD_MAX_MOVERS) {
         warnings.push(`movers clamped to top ${EXPERIMENT_PROGRESS_CARD_MAX_MOVERS} of ${ranked.length} qualifying metrics`);
     }
     return ranked
         .slice(0, EXPERIMENT_PROGRESS_CARD_MAX_MOVERS)
-        .map((candidate) => buildCardMover(candidate, warnings));
+        .map((candidate) => buildCardMover(candidate, biomarkerDesiredDirections, warnings));
 }
-function buildCardMover(candidate, warnings) {
+function buildCardMover(candidate, biomarkerDesiredDirections, warnings) {
     const { signal } = candidate;
     let unit = signal.unit ?? null;
     if (unit !== null && unit.length > 12) {
         warnings.push(`mover unit "${unit}" dropped (longer than 12 characters)`);
         unit = null;
     }
+    const direction = candidate.deltaAbs > 0
+        ? "up"
+        : candidate.deltaAbs < 0
+            ? "down"
+            : "neutral";
     return {
         label: clampCardText(signal.label, 40, `mover label "${signal.label}"`, warnings),
         changePct: formatPercentMagnitude(candidate.normalizedMove),
         value: formatCompactNumber(candidate.interventionMean).slice(0, 16),
         unit,
         delta: formatSignedDelta(candidate.deltaAbs, unit),
-        direction: candidate.deltaAbs > 0 ? "up" : candidate.deltaAbs < 0 ? "down" : "neutral",
-        sentiment: signal.movedAsExpected === true
-            ? "positive"
-            : signal.movedAsExpected === false
-                ? "negative"
-                : "neutral",
+        direction,
+        sentiment: resolveBiomarkerChangeSentiment(direction, signal.completeness === "good"
+            ? findBiomarkerDesiredDirection(biomarkerDesiredDirections, signal.biomarkerKey)
+            : null),
     };
 }
+function findBiomarkerDesiredDirection(entries, biomarkerKey) {
+    const metricIdentity = resolveExperimentMetricIdentity(biomarkerKey).metricKey;
+    for (let index = entries.length - 1; index >= 0; index -= 1) {
+        const entry = entries[index];
+        if (entry &&
+            resolveExperimentMetricIdentity(entry.biomarkerKey).metricKey === metricIdentity) {
+            return entry.desiredDirection;
+        }
+    }
+    return null;
+}
 function clampCardConfounders(confounders, warnings) {
     let entries = [...confounders];
     if (entries.length > EXPERIMENT_PROGRESS_CARD_MAX_CONFOUNDERS) {

package/node_modules/@murphai/query/dist/experiment-progress-card.js.map

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package/node_modules/@murphai/query/dist/experiments.d.ts

@@ -11,7 +11,7 @@ export type ExperimentOutcomeConfidenceLevel = "low" | "medium" | "high";
 export type ExperimentProgressReadinessReason = "missing_run_plan" | "missing_baseline_window" | "missing_intervention_window" | "missing_analysis_plan" | "missing_primary_biomarker" | "missing_metric_window";
 export type ExperimentFollowupKind = "missed-log" | "weekly-digest";
 export type ExperimentFollowupAction = "notify" | "skip";
-export type ExperimentFollowupReason = "experiment_not_active" | "not_in_intervention_window" | "missed_log_followup_disabled" | "reminders_disabled" | "session_already_logged" | "planned_session_log_missing" | "unsupported_session_schedule" | "weekly_digest_disabled" | "weekly_digest_not_due" | "weekly_digest_due";
+export type ExperimentFollowupReason = "experiment_not_active" | "not_in_intervention_window" | "missed_log_followup_disabled" | "reminders_disabled" | "session_already_logged" | "session_assumed" | "planned_session_log_missing" | "unsupported_session_schedule" | "weekly_digest_disabled" | "weekly_digest_not_due" | "weekly_digest_due";
 export interface ExperimentMetricPeriodSummary {
     daysWithData: number;
     mean: number | null;
@@ -39,14 +39,24 @@ export interface ExperimentProgressSummary extends ExperimentProgressSnapshot {
     asOf: string;
     adherence: {
         completedSessions: number;
+        assumedSessions?: number;
+        evidence?: {
+            eventKind: "activity_session" | "intervention_session";
+            activityKind?: string;
+        };
+        confirmedSessions?: number;
         expectedSessionsByNow: number | null;
+        loggedSessions?: number;
         minimumUsefulSessions: number | null;
+        partialSessions?: number;
+        sensedSessions?: number;
         sessionEventIds?: string[];
         status: ExperimentAdherenceStatus;
         targetSessions: number | null;
     };
     confounders: string[];
     dataCoverage: {
+        activityProviders: string[];
         baselineDaysAvailable: number;
         interventionDaysAvailable: number;
         primaryBiomarkerKey?: string | null;

package/node_modules/@murphai/query/dist/experiments.d.ts.map

@@ -1 +1 @@
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