@murphai/hosted-execution 0.1.15 → 0.1.18

package/node_modules/@murphai/core/dist/family/api.js

@@ -0,0 +1,221 @@
+import { CONTRACT_SCHEMA_VERSION, FRONTMATTER_DOC_TYPES, extractHealthEntityRegistryLinks, familyRegistryEntityDefinition, contractIdMaxLength, FAMILY_MEMBER_LIMITS, ID_PREFIXES, } from "@murphai/contracts";
+import { VaultError } from "../errors.js";
+import { generateRecordId } from "../ids.js";
+import { createMarkdownRegistryApi } from "../registry/api.js";
+import { bulletList, maybeSection, normalizeId, normalizeSlug, optionalBoolean, optionalString, requireString, validateSortedStringList, } from "../history/shared.js";
+const FAMILY_DIRECTORY = familyRegistryEntityDefinition.registry.directory;
+const FAMILY_TITLE_MAX_LENGTH = FAMILY_MEMBER_LIMITS.title;
+const FAMILY_RELATIONSHIP_MAX_LENGTH = FAMILY_MEMBER_LIMITS.relationship;
+const FAMILY_NOTE_MAX_LENGTH = FAMILY_MEMBER_LIMITS.note;
+const FAMILY_CONDITION_MAX_LENGTH = FAMILY_MEMBER_LIMITS.condition;
+const FAMILY_VARIANT_ID_MAX_LENGTH = contractIdMaxLength(ID_PREFIXES.variant);
+function parseFamilyMemberFrontmatter(attributes) {
+    const schema = familyRegistryEntityDefinition.registry.frontmatterSchema;
+    if (!schema) {
+        throw new Error("Family registry definition is missing a frontmatter schema.");
+    }
+    const result = schema.safeParse(attributes);
+    if (!result.success) {
+        throw new VaultError("VAULT_INVALID_FAMILY_MEMBER", "Family registry document has an unexpected shape.");
+    }
+    return result.data;
+}
+function sortFamilyRecords(records) {
+    records.sort((left, right) => left.entity.title.localeCompare(right.entity.title) ||
+        left.entity.familyMemberId.localeCompare(right.entity.familyMemberId));
+}
+function buildBody(record) {
+    const relations = canonicalizeFamilyRelations(record);
+    return [
+        `# ${record.title}`,
+        "",
+        `Relationship: ${record.relationship}`,
+        "",
+        "## Conditions",
+        "",
+        bulletList(record.conditions),
+        "",
+        "## Related Variants",
+        "",
+        bulletList(relations.relatedVariantIds),
+        "",
+        maybeSection("Notes", record.note),
+        "",
+    ].join("\n");
+}
+function normalizeFamilyLinkType(value) {
+    return value === "related_variant" ? value : null;
+}
+function compareFamilyLinks(left, right) {
+    return left.targetId.localeCompare(right.targetId);
+}
+function buildFamilyLinksFromFields(input) {
+    return (input.relatedVariantIds ?? []).map((targetId) => ({
+        type: "related_variant",
+        targetId,
+    }));
+}
+function normalizeFamilyLinks(rawLinks) {
+    const sortedLinks = [...rawLinks].sort(compareFamilyLinks);
+    const links = [];
+    const seen = new Set();
+    for (const link of sortedLinks) {
+        const dedupeKey = `${link.type}:${link.targetId}`;
+        if (seen.has(dedupeKey)) {
+            continue;
+        }
+        seen.add(dedupeKey);
+        links.push(link);
+    }
+    return links;
+}
+function parseFamilyLinks(attributes) {
+    return normalizeFamilyLinks(extractHealthEntityRegistryLinks("family", attributes).flatMap((link) => {
+        const type = normalizeFamilyLinkType(link.type);
+        return type ? [{ type, targetId: link.targetId }] : [];
+    }));
+}
+function familyRelationsFromLinks(links) {
+    const relatedVariantIds = links.map((link) => link.targetId);
+    return {
+        relatedVariantIds: relatedVariantIds.length > 0 ? relatedVariantIds : undefined,
+        links: [...links],
+    };
+}
+function canonicalizeFamilyRelations(input) {
+    const links = normalizeFamilyLinks(input.links !== undefined
+        ? [...input.links]
+        : buildFamilyLinksFromFields({
+            relatedVariantIds: input.relatedVariantIds,
+        }));
+    return familyRelationsFromLinks(links);
+}
+function recordFromParts(attributes, relativePath, markdown) {
+    const frontmatter = parseFamilyMemberFrontmatter(attributes);
+    const relations = canonicalizeFamilyRelations({
+        links: parseFamilyLinks(attributes),
+    });
+    const entity = {
+        ...frontmatter,
+        conditions: validateSortedStringList(frontmatter.conditions, "conditions", "condition", 24, FAMILY_CONDITION_MAX_LENGTH),
+        deceased: optionalBoolean(frontmatter.deceased, "deceased"),
+        note: optionalString(frontmatter.note, "note", FAMILY_NOTE_MAX_LENGTH),
+        relatedVariantIds: relations.relatedVariantIds,
+        links: relations.links,
+    };
+    return {
+        entity,
+        document: {
+            relativePath,
+            markdown,
+        },
+    };
+}
+const familyRegistryApi = createMarkdownRegistryApi({
+    directory: FAMILY_DIRECTORY,
+    recordFromParts,
+    isExpectedRecord: () => true,
+    invalidCode: "VAULT_INVALID_FAMILY_MEMBER",
+    invalidMessage: "Family registry document has an unexpected shape.",
+    sortRecords: sortFamilyRecords,
+    getRecordId: (record) => record.entity.familyMemberId,
+    getRecordSlug: (record) => record.entity.slug,
+    getRecordRelativePath: (record) => record.document.relativePath,
+    conflictCode: "VAULT_FAMILY_MEMBER_CONFLICT",
+    conflictMessage: "familyMemberId and slug resolve to different family members.",
+    readMissingCode: "VAULT_FAMILY_MEMBER_MISSING",
+    readMissingMessage: "Family member was not found.",
+    createRecordId: () => generateRecordId("fam"),
+    operationType: "family_upsert",
+    summary: (recordId) => `Upsert family member ${recordId}`,
+    audit: {
+        action: "family_upsert",
+        commandName: "core.upsertFamilyMember",
+        summary: (created) => `${created ? "Created" : "Updated"} family member registry record.`,
+    },
+});
+function buildAttributes(input) {
+    const relations = canonicalizeFamilyRelations(input);
+    return Object.fromEntries(Object.entries({
+        schemaVersion: CONTRACT_SCHEMA_VERSION.familyMemberFrontmatter,
+        docType: FRONTMATTER_DOC_TYPES.familyMember,
+        familyMemberId: input.familyMemberId,
+        slug: input.slug,
+        title: input.title,
+        relationship: input.relationship,
+        conditions: input.conditions,
+        deceased: input.deceased,
+        note: input.note,
+        relatedVariantIds: relations.relatedVariantIds,
+        links: relations.links.length > 0 ? relations.links : undefined,
+    }).filter(([, value]) => value !== undefined));
+}
+export async function upsertFamilyMember(input) {
+    const normalizedFamilyMemberId = normalizeId(input.familyMemberId, "familyMemberId", "fam");
+    const selectorSlug = (input.slug ? normalizeSlug(input.slug, "slug") : undefined) ??
+        (input.title ? normalizeSlug(undefined, "slug", input.title) : undefined);
+    const existingRecord = await familyRegistryApi.resolveExistingRecord({
+        vaultRoot: input.vaultRoot,
+        recordId: normalizedFamilyMemberId,
+        slug: selectorSlug,
+    });
+    const existingEntity = existingRecord?.entity;
+    const title = requireString(input.title ?? existingEntity?.title, "title", FAMILY_TITLE_MAX_LENGTH);
+    const relationship = requireString(input.relationship ?? existingEntity?.relationship, "relationship", FAMILY_RELATIONSHIP_MAX_LENGTH);
+    const conditions = input.conditions === undefined
+        ? existingEntity?.conditions
+        : validateSortedStringList(input.conditions, "conditions", "condition", 24, FAMILY_CONDITION_MAX_LENGTH);
+    const note = input.note === undefined
+        ? existingEntity?.note
+        : optionalString(input.note, "note", FAMILY_NOTE_MAX_LENGTH);
+    const relatedVariantIds = input.relatedVariantIds === undefined
+        ? existingEntity?.relatedVariantIds
+        : validateSortedStringList(input.relatedVariantIds, "relatedVariantIds", "variantId", 24, FAMILY_VARIANT_ID_MAX_LENGTH);
+    const usesRelationInputs = input.links !== undefined ||
+        input.relatedVariantIds !== undefined;
+    const relations = canonicalizeFamilyRelations({
+        links: input.links !== undefined ? input.links : usesRelationInputs ? undefined : existingEntity?.links,
+        relatedVariantIds,
+    });
+    return familyRegistryApi.upsertRecord({
+        vaultRoot: input.vaultRoot,
+        existingRecord,
+        recordId: normalizedFamilyMemberId,
+        requestedSlug: selectorSlug,
+        defaultSlug: normalizeSlug(undefined, "slug", title),
+        buildDocument: (target) => ({
+            attributes: buildAttributes({
+                familyMemberId: target.recordId,
+                slug: target.slug,
+                title,
+                relationship,
+                conditions,
+                deceased: input.deceased === undefined ? existingEntity?.deceased : optionalBoolean(input.deceased, "deceased"),
+                note,
+                relatedVariantIds: relations.relatedVariantIds,
+                links: relations.links,
+            }),
+            body: buildBody({
+                title,
+                relationship,
+                conditions,
+                note,
+                relatedVariantIds: relations.relatedVariantIds,
+                links: relations.links,
+            }),
+        }),
+    });
+}
+export async function listFamilyMembers(vaultRoot) {
+    return familyRegistryApi.listRecords(vaultRoot);
+}
+export async function readFamilyMember({ vaultRoot, familyMemberId, slug, }) {
+    const normalizedFamilyMemberId = normalizeId(familyMemberId, "familyMemberId", "fam");
+    const normalizedSlug = slug ? normalizeSlug(slug, "slug") : undefined;
+    return familyRegistryApi.readRecord({
+        vaultRoot,
+        recordId: normalizedFamilyMemberId,
+        slug: normalizedSlug,
+    });
+}
+//# sourceMappingURL=api.js.map

package/node_modules/@murphai/core/dist/family/api.js.map

@@ -0,0 +1 @@
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package/node_modules/@murphai/core/dist/family/index.d.ts

@@ -0,0 +1,3 @@
+export * from "./api.ts";
+export * from "./types.ts";
+//# sourceMappingURL=index.d.ts.map

package/node_modules/@murphai/core/dist/family/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/family/index.ts"],"names":[],"mappings":"AAAA,cAAc,UAAU,CAAC;AACzB,cAAc,YAAY,CAAC"}

package/node_modules/@murphai/core/dist/family/index.js

@@ -0,0 +1,3 @@
+export * from "./api.js";
+export * from "./types.js";
+//# sourceMappingURL=index.js.map

package/node_modules/@murphai/core/dist/family/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/family/index.ts"],"names":[],"mappings":"AAAA,cAAc,UAAU,CAAC;AACzB,cAAc,YAAY,CAAC"}

package/node_modules/@murphai/core/dist/family/types.d.ts

@@ -0,0 +1,34 @@
+import type { FamilyMemberFrontmatter } from "@murphai/contracts";
+import type { StoredMarkdownRegistryEntity } from "../bank/types.ts";
+export type FamilyMemberLinkType = "related_variant";
+export interface FamilyMemberLink {
+    type: FamilyMemberLinkType;
+    targetId: string;
+}
+export interface FamilyMemberEntity extends FamilyMemberFrontmatter {
+    links: FamilyMemberLink[];
+}
+export type FamilyMemberStoredDocument = StoredMarkdownRegistryEntity<FamilyMemberEntity>;
+export interface UpsertFamilyMemberInput {
+    vaultRoot: string;
+    familyMemberId?: string;
+    slug?: string;
+    title?: string;
+    relationship?: string;
+    conditions?: string[];
+    deceased?: boolean;
+    note?: string;
+    relatedVariantIds?: string[];
+    links?: FamilyMemberLink[];
+}
+export interface UpsertFamilyMemberResult {
+    created: boolean;
+    auditPath: string;
+    record: FamilyMemberStoredDocument;
+}
+export interface ReadFamilyMemberInput {
+    vaultRoot: string;
+    familyMemberId?: string;
+    slug?: string;
+}
+//# sourceMappingURL=types.d.ts.map

package/node_modules/@murphai/core/dist/family/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../src/family/types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,uBAAuB,EAAE,MAAM,oBAAoB,CAAC;AAElE,OAAO,KAAK,EAAE,4BAA4B,EAAE,MAAM,kBAAkB,CAAC;AAErE,MAAM,MAAM,oBAAoB,GAAG,iBAAiB,CAAC;AAErD,MAAM,WAAW,gBAAgB;IAC/B,IAAI,EAAE,oBAAoB,CAAC;IAC3B,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,kBAAmB,SAAQ,uBAAuB;IACjE,KAAK,EAAE,gBAAgB,EAAE,CAAC;CAC3B;AAED,MAAM,MAAM,0BAA0B,GAAG,4BAA4B,CAAC,kBAAkB,CAAC,CAAC;AAE1F,MAAM,WAAW,uBAAuB;IACtC,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;IACtB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,iBAAiB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC7B,KAAK,CAAC,EAAE,gBAAgB,EAAE,CAAC;CAC5B;AAED,MAAM,WAAW,wBAAwB;IACvC,OAAO,EAAE,OAAO,CAAC;IACjB,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,0BAA0B,CAAC;CACpC;AAED,MAAM,WAAW,qBAAqB;IACpC,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf"}

package/node_modules/@murphai/core/dist/family/types.js

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=types.js.map

package/node_modules/@murphai/core/dist/family/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/family/types.ts"],"names":[],"mappings":""}

package/node_modules/@murphai/core/dist/frontmatter.d.ts

@@ -0,0 +1,4 @@
+import type { FrontmatterDocument } from "./types.ts";
+export declare function stringifyFrontmatterDocument({ attributes, body }?: Partial<FrontmatterDocument>): string;
+export declare function parseFrontmatterDocument(documentText: string): FrontmatterDocument;
+//# sourceMappingURL=frontmatter.d.ts.map

package/node_modules/@murphai/core/dist/frontmatter.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"frontmatter.d.ts","sourceRoot":"","sources":["../src/frontmatter.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EACV,mBAAmB,EAGpB,MAAM,YAAY,CAAC;AAwGpB,wBAAgB,4BAA4B,CAC1C,EAAE,UAAe,EAAE,IAAS,EAAE,GAAE,OAAO,CAAC,mBAAmB,CAAM,GAChE,MAAM,CAQR;AAED,wBAAgB,wBAAwB,CAAC,YAAY,EAAE,MAAM,GAAG,mBAAmB,CAWlF"}

package/node_modules/@murphai/core/dist/frontmatter.js

@@ -0,0 +1,99 @@
+import { parseFrontmatterDocument as parseSharedFrontmatterDocument, } from "@murphai/contracts";
+import { VaultError } from "./errors.js";
+import { isPlainRecord } from "./types.js";
+function isFrontmatterObject(value) {
+    return isPlainRecord(value);
+}
+function stringifyScalar(value) {
+    if (value === null) {
+        return "null";
+    }
+    if (typeof value === "boolean") {
+        return value ? "true" : "false";
+    }
+    if (typeof value === "number" && Number.isFinite(value)) {
+        return String(value);
+    }
+    if (typeof value === "string") {
+        if (!value) {
+            return "\"\"";
+        }
+        if (/^[A-Za-z0-9_./:-]+$/.test(value)) {
+            return value;
+        }
+        return JSON.stringify(value);
+    }
+    throw new VaultError("VAULT_UNSUPPORTED_FRONTMATTER", "Frontmatter supports only scalars, arrays, and plain objects.", {
+        valueType: typeof value,
+    });
+}
+function serializeNode(value, indent = 0) {
+    const padding = " ".repeat(indent);
+    if (Array.isArray(value)) {
+        if (value.length === 0) {
+            return `${padding}[]`;
+        }
+        return value
+            .map((item) => {
+            if (Array.isArray(item) || isFrontmatterObject(item)) {
+                const nested = serializeNode(item, indent + 2);
+                return `${padding}-\n${nested}`;
+            }
+            return `${padding}- ${stringifyScalar(item)}`;
+        })
+            .join("\n");
+    }
+    if (isFrontmatterObject(value)) {
+        const entries = Object.entries(value);
+        if (entries.length === 0) {
+            return `${padding}{}`;
+        }
+        return entries
+            .map(([key, entryValue]) => {
+            if (!/^[A-Za-z0-9_-]+$/.test(key)) {
+                throw new VaultError("VAULT_INVALID_FRONTMATTER_KEY", `Invalid frontmatter key "${key}".`, {
+                    key,
+                });
+            }
+            if (Array.isArray(entryValue) || isFrontmatterObject(entryValue)) {
+                const nested = serializeNode(entryValue, indent + 2);
+                if (nested.trim() === "[]") {
+                    return `${padding}${key}: []`;
+                }
+                if (nested.trim() === "{}") {
+                    return `${padding}${key}: {}`;
+                }
+                return `${padding}${key}:\n${nested}`;
+            }
+            return `${padding}${key}: ${stringifyScalar(entryValue)}`;
+        })
+            .join("\n");
+    }
+    return `${padding}${stringifyScalar(value)}`;
+}
+function toVaultError(problem) {
+    return new VaultError("VAULT_INVALID_FRONTMATTER", problem.message, {
+        ...(problem.line === undefined ? {} : { line: problem.line }),
+        ...(problem.index === undefined ? {} : { index: problem.index }),
+    });
+}
+export function stringifyFrontmatterDocument({ attributes = {}, body = "" } = {}) {
+    if (!isFrontmatterObject(attributes)) {
+        throw new VaultError("VAULT_INVALID_FRONTMATTER", "Frontmatter attributes must be a plain object.");
+    }
+    const header = Object.keys(attributes).length === 0 ? "" : serializeNode(attributes);
+    const normalizedBody = String(body ?? "");
+    return header ? `---\n${header}\n---\n${normalizedBody}` : `---\n---\n${normalizedBody}`;
+}
+export function parseFrontmatterDocument(documentText) {
+    const parsed = parseSharedFrontmatterDocument(documentText, {
+        mode: "strict",
+        bodyNormalization: "preserve",
+        createError: toVaultError,
+    });
+    return {
+        attributes: parsed.attributes,
+        body: parsed.body,
+    };
+}
+//# sourceMappingURL=frontmatter.js.map

package/node_modules/@murphai/core/dist/frontmatter.js.map

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package/node_modules/@murphai/core/dist/fs.d.ts

@@ -0,0 +1,22 @@
+interface WriteVaultTextFileOptions {
+    overwrite?: boolean;
+}
+interface ImmutableRawWriteOptions {
+    allowExistingMatch?: boolean;
+}
+interface WalkVaultFilesOptions {
+    extension?: string | null;
+}
+export declare function pathExists(absolutePath: string): Promise<boolean>;
+export declare function ensureDirectory(absolutePath: string): Promise<void>;
+export declare function ensureVaultDirectory(vaultRoot: string, relativePath: string): Promise<string>;
+export declare function readUtf8File(vaultRoot: string, relativePath: string): Promise<string>;
+export declare function readJsonFile(vaultRoot: string, relativePath: string): Promise<unknown>;
+export declare function writeVaultTextFile(vaultRoot: string, relativePath: string, content: string, options?: WriteVaultTextFileOptions): Promise<string>;
+export declare function writeVaultJsonFile(vaultRoot: string, relativePath: string, value: unknown, options?: WriteVaultTextFileOptions): Promise<string>;
+export declare function appendVaultTextFile(vaultRoot: string, relativePath: string, content: string): Promise<string>;
+export declare function copyImmutableFileIntoVaultRaw(vaultRoot: string, sourcePath: string, relativePath: string, options?: ImmutableRawWriteOptions): Promise<string>;
+export declare function writeImmutableJsonFileIntoVaultRaw(vaultRoot: string, relativePath: string, value: unknown, options?: ImmutableRawWriteOptions): Promise<string>;
+export declare function walkVaultFiles(vaultRoot: string, relativeDirectory: string, options?: WalkVaultFilesOptions): Promise<string[]>;
+export {};
+//# sourceMappingURL=fs.d.ts.map

package/node_modules/@murphai/core/dist/fs.d.ts.map

@@ -0,0 +1 @@
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package/node_modules/@murphai/core/dist/fs.js

@@ -0,0 +1,172 @@
+import path from "node:path";
+import { promises as fs } from "node:fs";
+import { copyFileAtomicExclusive, writeTextFileAtomic, writeTextFileAtomicExclusive, } from "./atomic-write.js";
+import { VaultError } from "./errors.js";
+import { assertPathWithinVaultOnDisk, normalizeVaultRoot, normalizeRelativeVaultPath, resolveVaultPath, } from "./path-safety.js";
+import { applyImmutableWriteTarget, applyJsonlAppendTarget, applyTextWriteTarget, fileContentsEqual, prepareVerifiedWriteTarget, } from "./write-policy.js";
+import { isErrnoException } from "./types.js";
+async function readUtf8FileMatches(absolutePath, expectedContent) {
+    const existingContent = await fs.readFile(absolutePath, "utf8");
+    return existingContent === expectedContent;
+}
+export async function pathExists(absolutePath) {
+    try {
+        await fs.access(absolutePath);
+        return true;
+    }
+    catch (error) {
+        if (isErrnoException(error) && error.code === "ENOENT") {
+            return false;
+        }
+        throw error;
+    }
+}
+export async function ensureDirectory(absolutePath) {
+    await fs.mkdir(absolutePath, { recursive: true });
+}
+export async function ensureVaultDirectory(vaultRoot, relativePath) {
+    const resolved = resolveVaultPath(vaultRoot, relativePath);
+    await assertPathWithinVaultOnDisk(resolved.vaultRoot, resolved.absolutePath);
+    await ensureDirectory(resolved.absolutePath);
+    await assertPathWithinVaultOnDisk(resolved.vaultRoot, resolved.absolutePath);
+    return resolved.relativePath;
+}
+export async function readUtf8File(vaultRoot, relativePath) {
+    const resolved = resolveVaultPath(vaultRoot, relativePath);
+    await assertPathWithinVaultOnDisk(resolved.vaultRoot, resolved.absolutePath);
+    try {
+        return await fs.readFile(resolved.absolutePath, "utf8");
+    }
+    catch (error) {
+        if (isErrnoException(error) && error.code === "ENOENT") {
+            throw new VaultError("VAULT_FILE_MISSING", `Missing required file "${resolved.relativePath}".`, {
+                relativePath: resolved.relativePath,
+            });
+        }
+        throw error;
+    }
+}
+export async function readJsonFile(vaultRoot, relativePath) {
+    const resolved = resolveVaultPath(vaultRoot, relativePath);
+    const content = await readUtf8File(vaultRoot, resolved.relativePath);
+    try {
+        return JSON.parse(content);
+    }
+    catch (error) {
+        throw new VaultError("VAULT_INVALID_JSON", `Invalid JSON in "${resolved.relativePath}".`, {
+            relativePath: resolved.relativePath,
+            cause: error instanceof Error ? error.message : String(error),
+        });
+    }
+}
+export async function writeVaultTextFile(vaultRoot, relativePath, content, options = {}) {
+    const overwrite = options.overwrite ?? true;
+    const resolved = await prepareVerifiedWriteTarget(vaultRoot, relativePath, {
+        kind: "text",
+        messages: {
+            appendOnlyDisallowed: "Use appendJsonlRecord for ledger and audit shards.",
+            rawDisallowed: "Use copyRawArtifact for raw writes.",
+        },
+    });
+    await applyTextWriteTarget({
+        createTarget: () => writeTextFileAtomicExclusive(resolved.absolutePath, content),
+        matchesExistingContent: () => readUtf8FileMatches(resolved.absolutePath, content),
+        overwrite,
+        replaceTarget: () => writeTextFileAtomic(resolved.absolutePath, content),
+        target: resolved,
+    });
+    return resolved.relativePath;
+}
+export async function writeVaultJsonFile(vaultRoot, relativePath, value, options = {}) {
+    const content = `${JSON.stringify(value, null, 2)}\n`;
+    return writeVaultTextFile(vaultRoot, relativePath, content, options);
+}
+export async function appendVaultTextFile(vaultRoot, relativePath, content) {
+    const resolved = await prepareVerifiedWriteTarget(vaultRoot, relativePath, {
+        kind: "jsonl_append",
+        messages: {
+            appendOnlyDisallowed: "Append-only writes are restricted to JSONL ledger and audit shards.",
+            rawDisallowed: "Raw files are immutable once written.",
+        },
+    });
+    await applyJsonlAppendTarget({
+        appendPayload: (payload) => fs.appendFile(resolved.absolutePath, payload, "utf8"),
+        readPayload: async () => content,
+        target: resolved,
+    });
+    return resolved.relativePath;
+}
+export async function copyImmutableFileIntoVaultRaw(vaultRoot, sourcePath, relativePath, options = {}) {
+    const sourceAbsolutePath = path.resolve(String(sourcePath ?? "").trim());
+    if (!(await pathExists(sourceAbsolutePath))) {
+        throw new VaultError("VAULT_SOURCE_MISSING", "Raw source file does not exist.");
+    }
+    const sourceStats = await fs.stat(sourceAbsolutePath);
+    if (!sourceStats.isFile()) {
+        throw new VaultError("VAULT_SOURCE_INVALID", "Raw source path must point to a file.");
+    }
+    const resolved = await prepareVerifiedWriteTarget(vaultRoot, relativePath, {
+        kind: "raw",
+        messages: {
+            rawRequired: "Raw copies must target the raw/ tree.",
+        },
+    });
+    await applyImmutableWriteTarget({
+        allowExistingMatch: options.allowExistingMatch,
+        createEffect: "copy",
+        createTarget: () => copyFileAtomicExclusive(sourceAbsolutePath, resolved.absolutePath),
+        existsErrorMessage: "Raw target already exists and may not be overwritten.",
+        matchesExistingContent: () => fileContentsEqual(sourceAbsolutePath, resolved.absolutePath),
+        target: resolved,
+    });
+    return resolved.relativePath;
+}
+export async function writeImmutableJsonFileIntoVaultRaw(vaultRoot, relativePath, value, options = {}) {
+    const content = `${JSON.stringify(value, null, 2)}\n`;
+    const resolved = await prepareVerifiedWriteTarget(vaultRoot, relativePath, {
+        kind: "raw",
+        messages: {
+            rawRequired: "Raw writes must target the raw/ tree.",
+        },
+    });
+    await applyImmutableWriteTarget({
+        allowExistingMatch: options.allowExistingMatch,
+        createTarget: () => writeTextFileAtomicExclusive(resolved.absolutePath, content),
+        existsErrorMessage: "Raw target already exists and may not be overwritten.",
+        matchesExistingContent: () => readUtf8FileMatches(resolved.absolutePath, content),
+        target: resolved,
+    });
+    return resolved.relativePath;
+}
+export async function walkVaultFiles(vaultRoot, relativeDirectory, options = {}) {
+    const absoluteRoot = normalizeVaultRoot(vaultRoot);
+    const resolved = resolveVaultPath(vaultRoot, relativeDirectory);
+    const extension = options.extension ?? null;
+    const matches = [];
+    if (!(await pathExists(resolved.absolutePath))) {
+        return matches;
+    }
+    await assertPathWithinVaultOnDisk(absoluteRoot, resolved.absolutePath);
+    async function walk(currentAbsolutePath) {
+        const entries = await fs.readdir(currentAbsolutePath, { withFileTypes: true });
+        entries.sort((left, right) => left.name.localeCompare(right.name));
+        for (const entry of entries) {
+            const nextAbsolutePath = path.join(currentAbsolutePath, entry.name);
+            if (entry.isDirectory()) {
+                await walk(nextAbsolutePath);
+                continue;
+            }
+            if (extension && !entry.name.endsWith(extension)) {
+                continue;
+            }
+            const nextRelativePath = path
+                .relative(absoluteRoot, nextAbsolutePath)
+                .split(path.sep)
+                .join("/");
+            matches.push(normalizeRelativeVaultPath(nextRelativePath));
+        }
+    }
+    await walk(resolved.absolutePath);
+    return matches;
+}
+//# sourceMappingURL=fs.js.map

package/node_modules/@murphai/core/dist/fs.js.map

@@ -0,0 +1 @@
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package/node_modules/@murphai/core/dist/genetics/api.d.ts

@@ -0,0 +1,5 @@
+import type { GeneticVariantStoredDocument, ReadGeneticVariantInput, UpsertGeneticVariantInput, UpsertGeneticVariantResult } from "./types.ts";
+export declare function upsertGeneticVariant(input: UpsertGeneticVariantInput): Promise<UpsertGeneticVariantResult>;
+export declare function listGeneticVariants(vaultRoot: string): Promise<GeneticVariantStoredDocument[]>;
+export declare function readGeneticVariant({ vaultRoot, variantId, slug, }: ReadGeneticVariantInput): Promise<GeneticVariantStoredDocument>;
+//# sourceMappingURL=api.d.ts.map

package/node_modules/@murphai/core/dist/genetics/api.d.ts.map

@@ -0,0 +1 @@
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