@mrpatronz/nexusflow 0.2.19 → 1.3.1

package/dist/commands/commit.test.js

@@ -0,0 +1,54 @@
+import { describe, it, expect, vi, beforeEach } from 'vitest';
+import * as path from 'node:path';
+import * as fs from 'node:fs/promises';
+import { commitCommand } from './commit.js';
+import * as workspace from '../core/workspace.js';
+import * as multiGit from '../utils/multi-git.js';
+vi.mock('node:fs/promises');
+vi.mock('../core/config.js');
+vi.mock('../core/workspace.js');
+vi.mock('../utils/multi-git.js');
+describe('commitCommand --no-push handling (A1.1)', () => {
+    const workspacePath = path.resolve('/mock/workspace');
+    const repoPath = path.join(workspacePath, 'repo-1');
+    beforeEach(() => {
+        vi.clearAllMocks();
+        vi.spyOn(fs, 'access').mockResolvedValue(undefined);
+        vi.spyOn(workspace, 'loadFeatureConfig').mockResolvedValue({
+            id: 'feature',
+            branchName: 'feature-branch',
+            description: 'test',
+            repos: [repoPath],
+            assistants: ['claude'],
+            workspacePath,
+        });
+        vi.spyOn(multiGit, 'getWorkspaceRepos').mockResolvedValue([
+            { name: 'repo-1', path: repoPath, branchName: 'feature-branch' },
+        ]);
+        vi.spyOn(multiGit, 'getRepoStatus').mockResolvedValue({
+            hasChanges: true,
+            changedFiles: ['src/a.ts'],
+            files: [{ code: ' M', path: 'src/a.ts' }],
+            summary: '1 file changed',
+        });
+        vi.spyOn(multiGit, 'getDiffSummary').mockResolvedValue({ additions: 1, deletions: 0 });
+        vi.spyOn(multiGit, 'commitAndPush').mockResolvedValue({
+            success: true,
+            commitHash: 'abc1234',
+            message: 'ok',
+        });
+    });
+    it('suppresses push when commander reports push=false (--no-push)', async () => {
+        await commitCommand('wip', workspacePath, { push: false });
+        expect(multiGit.commitAndPush).toHaveBeenCalledWith(repoPath, 'wip', 'feature-branch', { noPush: true });
+    });
+    it('pushes by default when the flag is absent (push defaults to true)', async () => {
+        await commitCommand('wip', workspacePath, { push: true });
+        expect(multiGit.commitAndPush).toHaveBeenCalledWith(repoPath, 'wip', 'feature-branch', { noPush: false });
+    });
+    it('does not push during a dry run and never commits', async () => {
+        await commitCommand('wip', workspacePath, { push: false, dryRun: true });
+        expect(multiGit.commitAndPush).not.toHaveBeenCalled();
+    });
+});
+//# sourceMappingURL=commit.test.js.map

package/dist/commands/commit.test.js.map

@@ -0,0 +1 @@
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package/dist/commands/diff.d.ts

@@ -1,11 +1,18 @@
 /**
  * @module commands/diff
- * Displays diff summaries across all repositories in a workspace.
+ * Displays diff summaries across all repositories in a workspace, including
+ * commits that exist locally but have not been pushed yet.
  */
+interface DiffOptions {
+    /** Restrict the diff to these repos (by directory name). */
+    repo?: string[];
+}
 /**
  * Executes the diff command.
  *
  * @param workspaceArg - Optional workspace path.
+ * @param options - Optional flags.
  */
-export declare function diffCommand(workspaceArg?: string): Promise<void>;
+export declare function diffCommand(workspaceArg?: string, options?: DiffOptions): Promise<void>;
+export {};
 //# sourceMappingURL=diff.d.ts.map

package/dist/commands/diff.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"diff.d.ts","sourceRoot":"","sources":["../../src/commands/diff.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAWH,UAAU,WAAW;IACnB,4DAA4D;IAC5D,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;CACjB;AAED;;;;;GAKG;AACH,wBAAsB,WAAW,CAAC,YAAY,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,CAgG7F"}

package/dist/commands/diff.js

@@ -1,6 +1,7 @@
 /**
  * @module commands/diff
- * Displays diff summaries across all repositories in a workspace.
+ * Displays diff summaries across all repositories in a workspace, including
+ * commits that exist locally but have not been pushed yet.
  */
 import chalk from 'chalk';
 import { select } from '@inquirer/prompts';
@@ -8,13 +9,14 @@ import * as path from 'node:path';
 import * as fs from 'node:fs/promises';
 import { loadConfig } from '../core/config.js';
 import { listWorkspaces, loadFeatureConfig } from '../core/workspace.js';
-import { getWorkspaceRepos, getRepoStatus, getDiffSummary } from '../utils/multi-git.js';
+import { getWorkspaceRepos, getRepoStatus, getDiffSummary, getUnpushedCount } from '../utils/multi-git.js';
 /**
  * Executes the diff command.
  *
  * @param workspaceArg - Optional workspace path.
+ * @param options - Optional flags.
  */
-export async function diffCommand(workspaceArg) {
+export async function diffCommand(workspaceArg, options) {
     console.log(chalk.bold.cyan('\n🔍 NexusFlow — Workspace Diff Summary\n'));
     const workspacePath = await resolveWorkspace(workspaceArg);
     if (!workspacePath)
@@ -24,44 +26,66 @@ export async function diffCommand(workspaceArg) {
         console.error(chalk.red('✖ Failed to load workspace configuration.'));
         return;
     }
-    const repos = await getWorkspaceRepos(workspacePath);
-    let cleanCount = 0;
+    let repos = await getWorkspaceRepos(workspacePath);
+    if (options?.repo && options.repo.length > 0) {
+        const unknown = options.repo.filter((name) => !repos.some((r) => r.name === name));
+        if (unknown.length > 0) {
+            console.error(chalk.red(`✖ Repositor${unknown.length === 1 ? 'y' : 'ies'} not in this workspace: ${unknown.join(', ')}`));
+            console.log(chalk.dim(`  Available repos: ${repos.map((r) => r.name).join(', ')}`));
+            return;
+        }
+        repos = repos.filter((r) => options.repo.includes(r.name));
+    }
     const results = [];
     for (const repo of repos) {
         const status = await getRepoStatus(repo.path);
-        if (!status.hasChanges) {
-            cleanCount++;
+        const unpushed = await getUnpushedCount(repo.path, repo.branchName);
+        // A repo with no working-tree changes still matters when it has local
+        // commits that were never pushed — otherwise "all clean" hides them.
+        if (!status.hasChanges && !(unpushed && unpushed > 0)) {
             continue;
         }
-        const diff = await getDiffSummary(repo.path);
+        const diff = status.hasChanges
+            ? await getDiffSummary(repo.path)
+            : { summary: 'No working-tree changes', additions: 0, deletions: 0 };
         results.push({
             name: repo.name,
             filesChanged: status.changedFiles.length,
             additions: diff.additions,
             deletions: diff.deletions,
+            unpushed,
             summary: diff.summary,
         });
     }
     if (results.length === 0) {
-        console.log(chalk.green('✅ All repositories are clean.\n'));
+        console.log(chalk.green('✅ All repositories are clean and pushed.\n'));
         return;
     }
     // Print unified table
-    console.log(chalk.bold('Repository'.padEnd(25) + ' | ' + 'Files'.padEnd(6) + ' | ' + 'Additions'.padEnd(10) + ' | ' + 'Deletions'.padEnd(10)));
-    console.log(chalk.dim('─'.repeat(61)));
+    console.log(chalk.bold('Repository'.padEnd(25) + ' | ' +
+        'Files'.padEnd(6) + ' | ' +
+        'Additions'.padEnd(10) + ' | ' +
+        'Deletions'.padEnd(10) + ' | ' +
+        'Unpushed'.padEnd(8)));
+    console.log(chalk.dim('─'.repeat(72)));
     for (const res of results) {
         const fileStr = res.filesChanged.toString().padEnd(6);
         const addStr = `+${res.additions}`.padEnd(10);
         const delStr = `-${res.deletions}`.padEnd(10);
+        const unpushedStr = res.unpushed === null ? '?'.padEnd(8) : String(res.unpushed).padEnd(8);
         console.log(chalk.bold(res.name.padEnd(25)) + ' | ' +
             fileStr + ' | ' +
             chalk.green(addStr) + ' | ' +
-            chalk.red(delStr));
+            chalk.red(delStr) + ' | ' +
+            (res.unpushed ? chalk.yellow(unpushedStr) : chalk.dim(unpushedStr)));
     }
     console.log('\n' + chalk.bold('Detailed Diff Stats:'));
     for (const res of results) {
         console.log(`\n📂 ${chalk.bold.cyan(res.name)}:`);
         console.log(chalk.dim(res.summary.split('\n').map(l => `  ${l}`).join('\n')));
+        if (res.unpushed && res.unpushed > 0) {
+            console.log(chalk.yellow(`  ⬆ ${res.unpushed} commit${res.unpushed === 1 ? '' : 's'} not pushed to origin — run "nexusflow commit" or "git push"`));
+        }
     }
     console.log();
 }

package/dist/commands/diff.js.map

@@ -1 +1 @@
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+{"version":3,"file":"diff.js","sourceRoot":"","sources":["../../src/commands/diff.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,MAAM,OAAO,CAAC;AAC1B,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAC3C,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,KAAK,EAAE,MAAM,kBAAkB,CAAC;AAEvC,OAAO,EAAE,UAAU,EAAE,MAAM,mBAAmB,CAAC;AAC/C,OAAO,EAAE,cAAc,EAAE,iBAAiB,EAAE,MAAM,sBAAsB,CAAC;AACzE,OAAO,EAAE,iBAAiB,EAAE,aAAa,EAAE,cAAc,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAO3G;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,WAAW,CAAC,YAAqB,EAAE,OAAqB;IAC5E,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,2CAA2C,CAAC,CAAC,CAAC;IAE1E,MAAM,aAAa,GAAG,MAAM,gBAAgB,CAAC,YAAY,CAAC,CAAC;IAC3D,IAAI,CAAC,aAAa;QAAE,OAAO;IAE3B,MAAM,OAAO,GAAG,MAAM,iBAAiB,CAAC,aAAa,CAAC,CAAC;IACvD,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,2CAA2C,CAAC,CAAC,CAAC;QACtE,OAAO;IACT,CAAC;IAED,IAAI,KAAK,GAAG,MAAM,iBAAiB,CAAC,aAAa,CAAC,CAAC;IAEnD,IAAI,OAAO,EAAE,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC7C,MAAM,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,IAAI,CAAC,CAAC,CAAC;QACnF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACvB,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,cAAc,OAAO,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,2BAA2B,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;YAC1H,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,sBAAsB,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;YACpF,OAAO;QACT,CAAC;QACD,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,IAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;IAC9D,CAAC;IAED,MAAM,OAAO,GAOR,EAAE,CAAC;IAER,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,MAAM,GAAG,MAAM,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC9C,MAAM,QAAQ,GAAG,MAAM,gBAAgB,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC;QAEpE,sEAAsE;QACtE,qEAAqE;QACrE,IAAI,CAAC,MAAM,CAAC,UAAU,IAAI,CAAC,CAAC,QAAQ,IAAI,QAAQ,GAAG,CAAC,CAAC,EAAE,CAAC;YACtD,SAAS;QACX,CAAC;QAED,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU;YAC5B,CAAC,CAAC,MAAM,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC;YACjC,CAAC,CAAC,EAAE,OAAO,EAAE,yBAAyB,EAAE,SAAS,EAAE,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,CAAC;QAEvE,OAAO,CAAC,IAAI,CAAC;YACX,IAAI,EAAE,IAAI,CAAC,IAAI;YACf,YAAY,EAAE,MAAM,CAAC,YAAY,CAAC,MAAM;YACxC,SAAS,EAAE,IAAI,CAAC,SAAS;YACzB,SAAS,EAAE,IAAI,CAAC,SAAS;YACzB,QAAQ;YACR,OAAO,EAAE,IAAI,CAAC,OAAO;SACtB,CAAC,CAAC;IACL,CAAC;IAED,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzB,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,4CAA4C,CAAC,CAAC,CAAC;QACvE,OAAO;IACT,CAAC;IAED,sBAAsB;IACtB,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CACpB,YAAY,CAAC,MAAM,CAAC,EAAE,CAAC,GAAG,KAAK;QAC/B,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,KAAK;QACzB,WAAW,CAAC,MAAM,CAAC,EAAE,CAAC,GAAG,KAAK;QAC9B,WAAW,CAAC,MAAM,CAAC,EAAE,CAAC,GAAG,KAAK;QAC9B,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,CAAC,CAAC;IACH,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAEvC,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;QAC1B,MAAM,OAAO,GAAG,GAAG,CAAC,YAAY,CAAC,QAAQ,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QACtD,MAAM,MAAM,GAAG,IAAI,GAAG,CAAC,SAAS,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QAC9C,MAAM,MAAM,GAAG,IAAI,GAAG,CAAC,SAAS,EAAE,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QAC9C,MAAM,WAAW,GAAG,GAAG,CAAC,QAAQ,KAAK,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;QAC3F,OAAO,CAAC,GAAG,CACT,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,GAAG,KAAK;YACvC,OAAO,GAAG,KAAK;YACf,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,KAAK;YAC3B,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,KAAK;YACzB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,WAAW,CAAC,CAAC,CACpE,CAAC;IACJ,CAAC;IAED,OAAO,CAAC,GAAG,CAAC,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC,sBAAsB,CAAC,CAAC,CAAC;IACvD,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;QAC1B,OAAO,CAAC,GAAG,CAAC,QAAQ,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAClD,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAC9E,IAAI,GAAG,CAAC,QAAQ,IAAI,GAAG,CAAC,QAAQ,GAAG,CAAC,EAAE,CAAC;YACrC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,GAAG,CAAC,QAAQ,UAAU,GAAG,CAAC,QAAQ,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,8DAA8D,CAAC,CAAC,CAAC;QACtJ,CAAC;IACH,CAAC;IAED,OAAO,CAAC,GAAG,EAAE,CAAC;AAChB,CAAC;AAED;;GAEG;AACH,KAAK,UAAU,gBAAgB,CAAC,YAAqB;IACnD,IAAI,YAAY,EAAE,CAAC;QACjB,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;QAChD,IAAI,CAAC;YACH,MAAM,EAAE,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,YAAY,EAAE,gBAAgB,CAAC,CAAC,CAAC;YAC3D,OAAO,YAAY,CAAC;QACtB,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,mDAAmD,YAAY,EAAE,CAAC,CAAC,CAAC;YAC5F,OAAO,IAAI,CAAC;QACd,CAAC;IACH,CAAC;IAED,MAAM,UAAU,GAAG,MAAM,iBAAiB,CAAC,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC;IAC1D,IAAI,UAAU;QAAE,OAAO,UAAU,CAAC,aAAa,CAAC;IAEhD,MAAM,MAAM,GAAG,MAAM,UAAU,EAAE,CAAC;IAClC,MAAM,UAAU,GAAG,MAAM,cAAc,CAAC,MAAM,CAAC,a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package/dist/commands/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../src/commands/doctor.ts"],"names":[],"mappings":"AAaA;;;;GAIG;AACH,wBAAsB,aAAa,CAAC,YAAY,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAuSxE"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../src/commands/doctor.ts"],"names":[],"mappings":"AAcA;;;;GAIG;AACH,wBAAsB,aAAa,CAAC,YAAY,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAgSxE"}

package/dist/commands/doctor.js

@@ -4,9 +4,10 @@ import * as path from 'node:path';
 import * as fs from 'node:fs/promises';
 import { execa } from 'execa';
 import { loadConfig } from '../core/config.js';
-import { listWorkspaces, loadFeatureConfig } from '../core/workspace.js';
+import { listWorkspaces, loadFeatureConfig, resolveRepoInfos } from '../core/workspace.js';
 import { getRepoStatus } from '../utils/multi-git.js';
-import { analyzeAllRepos } from '../analyzers/index.js';
+import { workspaceFileExists, baseFileExists } from '../core/storage.js';
+import { analyzeAllReposCached } from '../analyzers/index.js';
 import { globby } from 'globby';
 import { isOllamaModelAvailable, getOpenAiCompatibleUrl } from '../utils/local-ai.js';
 /**
@@ -24,14 +25,7 @@ export async function doctorCommand(workspaceArg) {
         console.error(chalk.red('✖ Failed to load workspace configuration. Ensure nexusflow.json exists.'));
         return;
     }
-    const allRepos = await Promise.all(feature.repos.map(async (r) => {
-        const repoName = path.basename(r);
-        return {
-            name: repoName,
-            path: r,
-            defaultBranch: 'main',
-        };
-    }));
+    const allRepos = await resolveRepoInfos(feature.repos);
     console.log(chalk.cyan('Running diagnostics...\n'));
     const warnings = [];
     const errors = [];
@@ -62,7 +56,7 @@ export async function doctorCommand(workspaceArg) {
         return;
     }
     // ── 2. Run Analysis for detailed checks ────────────────────────────────
-    const analysis = await analyzeAllRepos(allRepos);
+    const { analysis } = await analyzeAllReposCached(allRepos, workspacePath);
     console.log();
     // ── 3. Branch & Git Status Checks ──────────────────────────────────────
     console.log(chalk.bold('🌿 Branch Alignment & Git Status:'));
@@ -175,23 +169,25 @@ export async function doctorCommand(workspaceArg) {
     }
     console.log();
     // ── 6. Missing Core Files ──────────────────────────────────────────────
+    // Checks go through the storage adapter so they hold for non-local providers
+    // (vault/obsidian) where these artifacts don't live at the workspace root.
     console.log(chalk.bold('📄 Core Artifacts:'));
+    const featureId = path.basename(workspacePath);
     const coreFiles = [
-        { name: 'WORKSPACE.md', required: true },
-        { name: 'nexusflow-knowledge.md', required: true },
-        { name: 'nexusflow-plan.md', required: true },
+        { name: 'WORKSPACE.md', exists: () => workspaceFileExists(workspacePath, featureId, 'WORKSPACE.md') },
+        { name: 'nexusflow-knowledge.md', exists: () => workspaceFileExists(workspacePath, featureId, 'nexusflow-knowledge.md') },
+        { name: 'nexusflow-plan.md', exists: () => workspaceFileExists(workspacePath, featureId, 'nexusflow-plan.md') },
     ];
-    // Add expected maps
+    // Per-repo maps are base-namespace files.
     for (const repo of allRepos) {
-        coreFiles.push({ name: `nexusflow-map-${repo.name}.md`, required: true });
+        const name = `nexusflow-map-${repo.name}.md`;
+        coreFiles.push({ name, exists: () => baseFileExists(workspacePath, repo.name, name) });
     }
     for (const file of coreFiles) {
-        const filePath = path.join(workspacePath, file.name);
-        try {
-            await fs.access(filePath);
+        if (await file.exists()) {
             console.log(`  ${chalk.green('✔')} ${file.name} exists`);
         }
-        catch {
+        else {
             warnings.push(`Missing core workspace artifact: "${file.name}".`);
             console.log(`  ${chalk.yellow('⚠')} ${file.name} is missing`);
         }

package/dist/commands/doctor.js.map

@@ -1 +1 @@
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package/dist/commands/handoff.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"handoff.d.ts","sourceRoot":"","sources":["../../src/commands/handoff.ts"],"names":[],"mappings":"AAYA;;;;;GAKG;AACH,wBAAsB,cAAc,CAAC,YAAY,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAgIzE"}
+{"version":3,"file":"handoff.d.ts","sourceRoot":"","sources":["../../src/commands/handoff.ts"],"names":[],"mappings":"AAYA;;;;;GAKG;AACH,wBAAsB,cAAc,CAAC,YAAY,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAuHzE"}

package/dist/commands/handoff.js

@@ -4,9 +4,9 @@ import * as path from 'node:path';
 import * as fs from 'node:fs/promises';
 import { execa } from 'execa';
 import { loadConfig } from '../core/config.js';
-import { listWorkspaces, loadFeatureConfig } from '../core/workspace.js';
+import { listWorkspaces, loadFeatureConfig, resolveRepoInfos } from '../core/workspace.js';
 import { getRepoStatus } from '../utils/multi-git.js';
-import { analyzeAllRepos } from '../analyzers/index.js';
+import { analyzeAllReposCached } from '../analyzers/index.js';
 import { buildDependencyGraph } from '../generators/plan-generator.js';
 /**
  * Runs the handoff command.
@@ -24,16 +24,9 @@ export async function handoffCommand(workspaceArg) {
         console.error(chalk.red('✖ Failed to load workspace configuration. Ensure nexusflow.json exists.'));
         return;
     }
-    const allRepos = await Promise.all(feature.repos.map(async (r) => {
-        const repoName = path.basename(r);
-        return {
-            name: repoName,
-            path: r,
-            defaultBranch: 'main',
-        };
-    }));
+    const allRepos = await resolveRepoInfos(feature.repos);
     console.log(chalk.cyan('Retrieving repository statuses and running analysis...'));
-    const analysis = await analyzeAllRepos(allRepos);
+    const { analysis } = await analyzeAllReposCached(allRepos, workspacePath);
     const reposStatusInfo = await Promise.all(allRepos.map(async (repo) => {
         const status = await getRepoStatus(repo.path);
         const branch = await getRepoBranch(repo.path);
@@ -58,9 +51,9 @@ export async function handoffCommand(workspaceArg) {
     let extractedQuestions = '_None recorded yet._';
     try {
         const knowledgeContent = await fs.readFile(knowledgePath, 'utf-8');
-        extractedGotchas = extractSection(knowledgeContent, 'Known Gotchas');
+        extractedGotchas = extractSection(knowledgeContent, ['Known Gotchas', 'Discovered Gotchas & Watch-outs', 'Discovered Gotchas']);
         extractedDecisions = extractSection(knowledgeContent, 'Architecture Decisions');
-        extractedQuestions = extractSection(knowledgeContent, 'Clarifying Questions for the User');
+        extractedQuestions = extractSection(knowledgeContent, ['Clarifying Questions for the User', 'Clarifying Questions']);
     }
     catch { }
     // Build dependency description
@@ -175,11 +168,14 @@ function getTestCommand(repoPath, analysis) {
     return 'npm test'; // fallback
 }
 /**
- * Extracts a specific section from the knowledge file.
+ * Extracts a specific section from the knowledge file. Accepts one or more
+ * header aliases so it tolerates both the workspace doc's headers and the
+ * base-knowledge template's differently-worded equivalents.
  */
 function extractSection(content, header) {
+    const headers = Array.isArray(header) ? header : [header];
     const lines = content.split('\n');
-    const index = lines.findIndex(l => l.trim().startsWith(`## ${header}`));
+    const index = lines.findIndex(l => headers.some(h => l.trim().startsWith(`## ${h}`)));
     if (index === -1)
         return '_None recorded yet._';
     const resultLines = [];

package/dist/commands/handoff.js.map

@@ -1 +1 @@
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package/dist/commands/refresh.d.ts

@@ -1,12 +1,14 @@
 /**
  * Runs the refresh command.
- * Updates context files, maps, and plans.
+ * Updates context files, maps, and plans — re-analyzing only repos whose
+ * content changed since the last run (use --force to re-analyze everything).
  *
- * @param options - CLI options, e.g. { repo: 'API_CoworkerFacade' }.
+ * @param options - CLI options, e.g. { repo: 'API_CoworkerFacade', force: true }.
  * @param workspaceArg - Optional workspace path.
  */
 export declare function refreshCommand(options: {
     repo?: string;
     base?: boolean;
+    force?: boolean;
 }, workspaceArg?: string): Promise<void>;
 //# sourceMappingURL=refresh.d.ts.map

package/dist/commands/refresh.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"refresh.d.ts","sourceRoot":"","sources":["../../src/commands/refresh.ts"],"names":[],"mappings":"AAYA;;;;;;GAMG;AACH,wBAAsB,cAAc,CAClC,OAAO,EAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAA;CAAE,EAC1C,YAAY,CAAC,EAAE,MAAM,GACpB,OAAO,CAAC,IAAI,CAAC,CAqEf"}
+{"version":3,"file":"refresh.d.ts","sourceRoot":"","sources":["../../src/commands/refresh.ts"],"names":[],"mappings":"AASA;;;;;;;GAOG;AACH,wBAAsB,cAAc,CAClC,OAAO,EAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,OAAO,CAAA;CAAE,EAC3D,YAAY,CAAC,EAAE,MAAM,GACpB,OAAO,CAAC,IAAI,CAAC,CAiDf"}

package/dist/commands/refresh.js

@@ -4,13 +4,13 @@ import * as path from 'node:path';
 import * as fs from 'node:fs/promises';
 import { loadConfig } from '../core/config.js';
 import { listWorkspaces, loadFeatureConfig } from '../core/workspace.js';
-import { analyzeAllRepos } from '../analyzers/index.js';
-import { generateContextFiles } from '../generators/index.js';
+import { refreshWorkspace } from '../core/refresh.js';
 /**
  * Runs the refresh command.
- * Updates context files, maps, and plans.
+ * Updates context files, maps, and plans — re-analyzing only repos whose
+ * content changed since the last run (use --force to re-analyze everything).
  *
- * @param options - CLI options, e.g. { repo: 'API_CoworkerFacade' }.
+ * @param options - CLI options, e.g. { repo: 'API_CoworkerFacade', force: true }.
  * @param workspaceArg - Optional workspace path.
  */
 export async function refreshCommand(options, workspaceArg) {
@@ -36,40 +36,24 @@ export async function refreshCommand(options, workspaceArg) {
     else {
         console.log('Refreshing context for all repositories...');
     }
-    const allRepos = await Promise.all(feature.repos.map(async (r) => {
-        const repoName = path.basename(r);
-        return {
-            name: repoName,
-            path: r,
-            defaultBranch: 'main',
-        };
-    }));
-    console.log(chalk.cyan('Running project analysis...'));
-    const analysis = await analyzeAllRepos(allRepos);
-    const ctx = {
-        feature,
-        repos: allRepos,
-        analysis,
-    };
-    console.log(chalk.cyan('Regenerating context files and maps...'));
-    await generateContextFiles(ctx, feature.assistants, workspacePath, onlyRepo, options.base);
-    // If handoff file exists, refresh it automatically too!
-    const handoffPath = path.join(workspacePath, 'nexusflow-handoff.md');
-    let hasHandoff = false;
+    if (options.force) {
+        console.log(chalk.dim('Force mode: ignoring analysis cache.'));
+    }
+    let report;
     try {
-        await fs.access(handoffPath);
-        hasHandoff = true;
+        report = await refreshWorkspace(workspacePath, {
+            onlyRepo,
+            baseOnly: options.base,
+            force: options.force,
+        });
     }
-    catch { }
-    if (!options.base && hasHandoff) {
-        console.log(chalk.cyan('Refreshing handoff bundle...'));
-        try {
-            const { handoffCommand } = await import('./handoff.js');
-            await handoffCommand(workspacePath);
-        }
-        catch (error) {
-            console.warn(chalk.yellow(`  ⚠ Failed to refresh handoff bundle: ${error}`));
-        }
+    catch (error) {
+        console.error(chalk.red(`✖ Failed to refresh: ${error instanceof Error ? error.message : String(error)}`));
+        return;
+    }
+    if (report.reusedRepos.length > 0) {
+        console.log(chalk.dim(`\n♻️  Token-efficient refresh: ${report.reusedRepos.length} unchanged repo(s) reused cached analysis` +
+            (report.analyzedRepos.length > 0 ? `, ${report.analyzedRepos.length} re-analyzed.` : '.')));
     }
     console.log(chalk.bold.green('\n✅ Workspace context successfully refreshed!\n'));
 }

package/dist/commands/refresh.js.map

@@ -1 +1 @@
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