@mrpatronz/nexusflow 0.2.19 → 1.3.1

package/dist/utils/multi-git.js

@@ -71,10 +71,15 @@ export async function getRepoStatus(repoPath) {
             cwd: repoPath,
         });
         const lines = stdout.trim().split('\n').filter(Boolean);
-        const changedFiles = lines.map((line) => line.slice(3).trim());
+        const files = lines.map((line) => ({
+            code: line.slice(0, 2),
+            path: line.slice(3).trim(),
+        }));
+        const changedFiles = files.map((f) => f.path);
         return {
             hasChanges: changedFiles.length > 0,
             changedFiles,
+            files,
             summary: changedFiles.length === 0
                 ? 'Clean'
                 : `${changedFiles.length} file${changedFiles.length === 1 ? '' : 's'} changed`,
@@ -84,10 +89,29 @@ export async function getRepoStatus(repoPath) {
         return {
             hasChanges: false,
             changedFiles: [],
+            files: [],
             summary: `Error: ${error instanceof Error ? error.message : String(error)}`,
         };
     }
 }
+/**
+ * Counts commits on the current branch that have not been pushed to
+ * `origin/<branchName>` yet.
+ *
+ * @param repoPath   - Absolute path to the repo root.
+ * @param branchName - Branch to compare against on origin.
+ * @returns Number of unpushed commits, or null when the remote branch does
+ *          not exist (never pushed) or git fails.
+ */
+export async function getUnpushedCount(repoPath, branchName) {
+    try {
+        const { stdout } = await execa('git', ['rev-list', '--count', `origin/${branchName}..HEAD`], { cwd: repoPath });
+        return parseInt(stdout.trim(), 10);
+    }
+    catch {
+        return null;
+    }
+}
 /**
  * Extracts the stderr (falling back to the message) from a thrown execa error.
  */
@@ -159,8 +183,17 @@ export async function rebaseRepo(repoPath, baseBranch) {
         }
     }
     catch (error) {
-        // Genuine merge conflict (or other rebase failure). Abort so the repo is
-        // never left mid-rebase, then restore the user's stashed work.
+        // Genuine merge conflict (or other rebase failure). Capture the conflicted
+        // paths while the rebase is still in progress, then abort so the repo is
+        // never left mid-rebase, and restore the user's stashed work.
+        let conflictFiles = [];
+        try {
+            const { stdout } = await execa('git', ['diff', '--name-only', '--diff-filter=U'], { cwd: repoPath });
+            conflictFiles = stdout.split('\n').filter(Boolean);
+        }
+        catch {
+            // Best-effort capture; the conflict text still carries the details.
+        }
         try {
             await execa('git', ['rebase', '--abort'], { cwd: repoPath });
         }
@@ -179,8 +212,11 @@ export async function rebaseRepo(repoPath, baseBranch) {
         return {
             success: false,
             status: 'conflict',
-            message: 'Conflict during rebase',
+            message: conflictFiles.length > 0
+                ? `Conflict during rebase (${conflictFiles.length} file${conflictFiles.length === 1 ? '' : 's'})`
+                : 'Conflict during rebase',
             conflict: errText(error),
+            conflictFiles,
             stashed,
         };
     }

package/dist/utils/multi-git.js.map

@@ -1 +1 @@
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package/dist/utils/prompts.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"prompts.d.ts","sourceRoot":"","sources":["../../src/utils/prompts.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAKH,OAAO,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,cAAc,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AAGrF;;GAEG;AACH,wBAAsB,gBAAgB,IAAI,OAAO,CAAC,MAAM,CAAC,CAcxD;AAED;;;GAGG;AACH,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,MAAM,CAAC,CA0BzD;AAED;;;GAGG;AACH,wBAAsB,iBAAiB,CAAC,KAAK,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,CA4F9E;AAED;;GAEG;AACH,wBAAsB,cAAc,CAClC,QAAQ,EAAE,UAAU,EAAE,GACrB,OAAO,CAAC,WAAW,EAAE,CAAC,CAexB;AAED;;GAEG;AACH,wBAAsB,kBAAkB,CACtC,QAAQ,EAAE,cAAc,EAAE,GACzB,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC,CA0BhC"}

package/dist/utils/prompts.js

@@ -4,6 +4,7 @@
  */
 import { input, checkbox, confirm, search } from '@inquirer/prompts';
 import chalk from 'chalk';
+import { isValidBranchName } from './git.js';
 /**
  * Prompts the user for a feature branch name.
  */
@@ -11,10 +12,15 @@ export async function promptBranchName() {
     const branchName = await input({
         message: 'Feature branch name:',
         validate: (value) => {
-            if (!value.trim())
+            const trimmed = value.trim();
+            if (!trimmed)
                 return 'Branch name cannot be empty';
-            if (/\s/.test(value))
+            if (/\s/.test(trimmed))
                 return 'Branch name cannot contain spaces';
+            // Reject git-illegal names up front so worktree creation doesn't fail
+            // deep inside createWorkspace after the workspace dir already exists.
+            if (!isValidBranchName(trimmed))
+                return 'Not a valid git branch name';
             return true;
         },
     });

package/dist/utils/prompts.js.map

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package/package.json

@@ -1,14 +1,26 @@
 {
   "name": "@mrpatronz/nexusflow",
-  "version": "0.2.19",
+  "version": "1.3.1",
   "description": "Combine multiple repos into a workspace with rich AI assistant context",
   "type": "module",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/antan87/NexusFlow.git"
+  },
   "main": "dist/index.js",
   "bin": {
     "nexusflow": "dist/index.js"
   },
+  "files": [
+    "dist"
+  ],
+  "publishConfig": {
+    "access": "public",
+    "provenance": true
+  },
   "scripts": {
     "build": "tsc && npm run build --prefix gui",
+    "version": "node scripts/sync-version.mjs && git add -A",
     "dev": "tsc --watch",
     "start": "node dist/index.js",
     "ui": "node dist/index.js ui",

package/.agents/skills/ccc/SKILL.md

@@ -1,71 +0,0 @@
----
-name: ccc
-description: "This skill should be used when code search is needed (whether explicitly requested or as part of completing a task), when indexing the codebase after changes, or when the user asks about ccc, cocoindex-code, or the codebase index. Trigger phrases include 'search the codebase', 'find code related to', 'update the index', 'ccc', 'cocoindex-code'."
----
-
-# ccc - Semantic Code Search & Indexing
-
-`ccc` is the CLI for CocoIndex Code, providing semantic search over the current codebase and index management.
-
-## Ownership
-
-The agent owns the `ccc` lifecycle for the current project — initialization, indexing, and searching. Do not ask the user to perform these steps; handle them automatically.
-
-- **Initialization**: If `ccc search` or `ccc index` fails with an initialization error (e.g., "Not in an initialized project directory"), run `ccc init` from the project root directory, then `ccc index` to build the index, then retry the original command.
-- **Index freshness**: Keep the index up to date by running `ccc index` (or `ccc search --refresh`) when the index may be stale — e.g., at the start of a session, or after making significant code changes (new files, refactors, renamed modules). There is no need to re-index between consecutive searches if no code was changed in between.
-- **Installation**: If `ccc` itself is not found (command not found), refer to [management.md](references/management.md) for installation instructions and inform the user.
-
-## Searching the Codebase
-
-To perform a semantic search:
-
-```bash
-ccc search <query terms>
-```
-
-The query should describe the concept, functionality, or behavior to find, not exact code syntax. For example:
-
-```bash
-ccc search database connection pooling
-ccc search user authentication flow
-ccc search error handling retry logic
-```
-
-### Filtering Results
-
-- **By language** (`--lang`, repeatable): restrict results to specific languages.
-
-  ```bash
-  ccc search --lang python --lang markdown database schema
-  ```
-
-- **By path** (`--path`): restrict results to a glob pattern relative to project root. If omitted, defaults to the current working directory (only results under that subdirectory are returned).
-
-  ```bash
-  ccc search --path 'src/api/*' request validation
-  ```
-
-### Pagination
-
-Results default to the first page. To retrieve additional results:
-
-```bash
-ccc search --offset 5 --limit 5 database schema
-```
-
-If all returned results look relevant, use `--offset` to fetch the next page — there are likely more useful matches beyond the first page.
-
-### Working with Search Results
-
-Search results include file paths and line ranges. To explore a result in more detail:
-
-- Use the editor's built-in file reading capabilities (e.g., the `Read` tool) to load the matched file and read lines around the returned range for full context.
-- When working in a terminal without a file-reading tool, use `sed -n '<start>,<end>p' <file>` to extract a specific line range.
-
-## Settings
-
-To view or edit embedding model configuration, include/exclude patterns, or language overrides, see [settings.md](references/settings.md).
-
-## Management & Troubleshooting
-
-For installation, initialization, daemon management, troubleshooting, and cleanup commands, see [management.md](references/management.md).

package/.agents/skills/ccc/references/management.md

@@ -1,110 +0,0 @@
-# ccc Management
-
-## Installation
-
-Install CocoIndex Code via pipx. Two install styles:
-
-```bash
-pipx install 'cocoindex-code[full]'      # batteries included (local embeddings via sentence-transformers)
-pipx install cocoindex-code              # slim (LiteLLM-only; requires a cloud embedding provider + API key)
-```
-
-The `[full]` extra pulls in `sentence-transformers` so the first-run default (local embeddings, no API key) works out of the box. The slim install is for environments where you don't want the torch/transformers deps and plan to use a LiteLLM-supported cloud provider instead.
-
-To upgrade to the latest version:
-
-```bash
-pipx upgrade cocoindex-code
-```
-
-After installation, the `ccc` command is available globally.
-
-## Project Initialization
-
-Run from the root directory of the project to index:
-
-```bash
-ccc init
-```
-
-**First run (global settings don't exist yet)** — `ccc init` prompts interactively for the embedding provider (sentence-transformers / litellm) and model, then runs a one-off test embed via the daemon to confirm the model works. Accept the defaults for the sentence-transformers path, or pick litellm and enter a model identifier.
-
-**Subsequent runs** (global settings already exist) — prompts are skipped; only project settings and `.gitignore` are set up.
-
-To skip the interactive prompts on the first run (e.g. in a script or container), pass `--litellm-model MODEL`:
-
-```bash
-ccc init --litellm-model openai/text-embedding-3-small
-```
-
-This is also the only way to pick a LiteLLM model when stdin isn't a TTY and you've done a slim install.
-
-`ccc init` creates:
-- `~/.cocoindex_code/global_settings.yml` (user-level, embedding config + env vars).
-- `.cocoindex_code/settings.yml` (project-level, include/exclude patterns).
-
-If `.git` exists in the directory, `.cocoindex_code/` is automatically added to `.gitignore`.
-
-Use `-f` to skip the confirmation prompt if `ccc init` detects a potential parent project root.
-
-After initialization, edit the settings files if needed (see [settings.md](settings.md) for format details), then run `ccc index` to build the initial index. If the model test printed `[FAIL]` during `init`, edit `global_settings.yml` (and optionally add API keys under the commented `envs:` block) and verify with `ccc doctor` before indexing.
-
-## Troubleshooting
-
-### Diagnostics
-
-Run `ccc doctor` to check system health end-to-end:
-
-```bash
-ccc doctor
-```
-
-This checks global settings, daemon status, embedding model (runs a test embedding), and — if run from within a project — file matching (walks files using the same logic as the indexer) and index status. Results stream incrementally. Always points to `daemon.log` at the end for further investigation.
-
-### Checking Project Status
-
-To view the current project's index status:
-
-```bash
-ccc status
-```
-
-This shows whether indexing is ongoing and index statistics.
-
-### Daemon Management
-
-The daemon starts automatically on first use. To check its status:
-
-```bash
-ccc daemon status
-```
-
-This shows whether the daemon is running, its version, uptime, and loaded projects.
-
-To restart the daemon (useful if it gets into a bad state):
-
-```bash
-ccc daemon restart
-```
-
-To stop the daemon:
-
-```bash
-ccc daemon stop
-```
-
-## Cleanup
-
-To reset a project's index (removes databases, keeps settings):
-
-```bash
-ccc reset
-```
-
-To fully remove all CocoIndex Code data for a project (including settings):
-
-```bash
-ccc reset --all
-```
-
-Both commands prompt for confirmation. Use `-f` to skip.

package/.agents/skills/ccc/references/settings.md

@@ -1,126 +0,0 @@
-# ccc Settings
-
-Configuration lives in two YAML files, both created automatically by `ccc init`.
-
-## User-Level Settings (`~/.cocoindex_code/global_settings.yml`)
-
-Shared across all projects. Controls the embedding model and extra environment variables for the daemon.
-
-```yaml
-embedding:
-  provider: sentence-transformers   # or "litellm" (default when provider is omitted)
-  model: Snowflake/snowflake-arctic-embed-xs
-  device: mps                       # optional: cpu, cuda, mps (auto-detected if omitted)
-  min_interval_ms: 300              # optional: pace LiteLLM embedding requests to reduce 429s; defaults to 5 for LiteLLM
-
-envs:                               # extra environment variables for the daemon
-  OPENAI_API_KEY: your-key          # only needed if not already in the shell environment
-```
-
-### Fields
-
-| Field | Description |
-|-------|-------------|
-| `embedding.provider` | `sentence-transformers` for local models, `litellm` (or omit) for cloud/remote models |
-| `embedding.model` | Model identifier — format depends on provider (see examples below) |
-| `embedding.device` | Optional. `cpu`, `cuda`, or `mps`. Auto-detected if omitted. Only relevant for `sentence-transformers`. |
-| `embedding.min_interval_ms` | Optional. Minimum delay between LiteLLM embedding requests in milliseconds. Defaults to `5` for LiteLLM and is ignored by `sentence-transformers`. Set explicitly to override the default. |
-| `envs` | Key-value map of environment variables injected into the daemon. Use for API keys not already in the shell environment. |
-
-### Embedding Model Examples
-
-**Local (sentence-transformers, no API key needed):**
-
-```yaml
-embedding:
-  provider: sentence-transformers
-  model: Snowflake/snowflake-arctic-embed-xs        # default, lightweight
-```
-
-```yaml
-embedding:
-  provider: sentence-transformers
-  model: nomic-ai/CodeRankEmbed                     # better code retrieval, needs GPU (~1 GB VRAM)
-```
-
-**Ollama (local):**
-
-```yaml
-embedding:
-  model: ollama/nomic-embed-text
-```
-
-**OpenAI:**
-
-```yaml
-embedding:
-  model: text-embedding-3-small
-  min_interval_ms: 300
-envs:
-  OPENAI_API_KEY: your-api-key
-```
-
-**Gemini:**
-
-```yaml
-embedding:
-  model: gemini/gemini-embedding-001
-envs:
-  GEMINI_API_KEY: your-api-key
-```
-
-**Voyage (code-optimized):**
-
-```yaml
-embedding:
-  model: voyage/voyage-code-3
-envs:
-  VOYAGE_API_KEY: your-api-key
-```
-
-For the full list of supported cloud providers and model identifiers, see [LiteLLM Embedding Models](https://docs.litellm.ai/docs/embedding/supported_embedding).
-
-### Important
-
-Switching embedding models changes vector dimensions — you must re-index after changing the model:
-
-```bash
-ccc reset && ccc index
-```
-
-## Project-Level Settings (`<project>/.cocoindex_code/settings.yml`)
-
-Per-project. Controls which files to index. Created by `ccc init` and automatically added to `.gitignore`.
-
-```yaml
-include_patterns:
-  - "**/*.py"
-  - "**/*.js"
-  - "**/*.ts"
-  # ... (sensible defaults for 28+ file types)
-
-exclude_patterns:
-  - "**/.*"              # hidden directories
-  - "**/__pycache__"
-  - "**/node_modules"
-  - "**/dist"
-  # ...
-
-language_overrides:
-  - ext: inc             # treat .inc files as PHP
-    lang: php
-```
-
-### Fields
-
-| Field | Description |
-|-------|-------------|
-| `include_patterns` | Glob patterns for files to index. Defaults cover common languages (Python, JS/TS, Rust, Go, Java, C/C++, C#, SQL, Shell, Markdown, PHP, Lua, etc.). |
-| `exclude_patterns` | Glob patterns for files/directories to skip. Defaults exclude hidden dirs, `node_modules`, `dist`, `__pycache__`, `vendor`, etc. |
-| `language_overrides` | List of `{ext, lang}` pairs to override language detection for specific file extensions. |
-
-### Editing Tips
-
-- To index additional file types, append glob patterns to `include_patterns` (e.g. `"**/*.proto"`).
-- To exclude a directory, append to `exclude_patterns` (e.g. `"**/generated"`).
-- After editing, run `ccc index` to re-index with the new settings.

package/.github/dependabot.yml

@@ -1,52 +0,0 @@
-version: 2
-updates:
-  # 1. Root npm dependencies
-  - package-ecosystem: "npm"
-    directory: "/"
-    schedule:
-      interval: "daily"
-      time: "03:00"
-    open-pull-requests-limit: 10
-    reviewers:
-      - "antan87"
-    groups:
-      root-minor-patch:
-        patterns:
-          - "*"
-        update-types:
-          - "minor"
-          - "patch"
-
-  # 2. GUI npm dependencies
-  - package-ecosystem: "npm"
-    directory: "/gui"
-    schedule:
-      interval: "daily"
-      time: "03:00"
-    open-pull-requests-limit: 10
-    reviewers:
-      - "antan87"
-    groups:
-      gui-minor-patch:
-        patterns:
-          - "*"
-        update-types:
-          - "minor"
-          - "patch"
-
-  # 3. VS Code Extension npm dependencies
-  - package-ecosystem: "npm"
-    directory: "/extension"
-    schedule:
-      interval: "daily"
-      time: "03:00"
-    open-pull-requests-limit: 10
-    reviewers:
-      - "antan87"
-    groups:
-      extension-minor-patch:
-        patterns:
-          - "*"
-        update-types:
-          - "minor"
-          - "patch"

package/.github/workflows/ci.yml

@@ -1,44 +0,0 @@
-name: CI
-
-on:
-  push:
-    branches: [main]
-  pull_request:
-    branches: [main]
-
-jobs:
-  build-and-test:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout Repository
-        uses: actions/checkout@v4
-
-      - name: Setup Node.js
-        uses: actions/setup-node@v4
-        with:
-          node-version: 22
-
-      - name: Install Dependencies
-        run: npm ci
-
-      - name: Install GUI Dependencies
-        run: npm ci --prefix gui
-
-      - name: Install Extension Dependencies
-        run: npm ci --prefix extension
-
-      - name: Build Project
-        run: npm run build
-
-      - name: Compile VS Code Extension
-        run: npm run extension:compile
-
-      - name: Run Tests
-        run: npm test
-
-      - name: Install Playwright Browsers
-        run: npx playwright install chromium --with-deps
-        working-directory: gui
-
-      - name: Run GUI E2E Tests
-        run: npm run test:gui

package/.github/workflows/dependabot-merge.yml

@@ -1,53 +0,0 @@
-name: Dependabot Auto-Merge and Version Bump
-
-on:
-  pull_request_target:
-    types: [opened, reopened, synchronize]
-    branches: [main]
-
-permissions:
-  contents: write
-  pull-requests: write
-
-jobs:
-  dependabot:
-    runs-on: ubuntu-latest
-    if: github.actor == 'dependabot[bot]'
-    steps:
-      - name: Checkout PR branch
-        uses: actions/checkout@v4
-        with:
-          ref: ${{ github.event.pull_request.head.ref }}
-          fetch-depth: 0
-
-      - name: Setup Node.js
-        uses: actions/setup-node@v4
-        with:
-          node-version: 20
-
-      - name: Bump Version
-        run: |
-          # Configure Git
-          git config user.name "github-actions[bot]"
-          git config user.email "github-actions[bot]@users.noreply.github.com"
-          
-          # Fetch main to compare versions
-          git fetch origin main:main
-          
-          MAIN_VERSION=$(git show main:package.json | node -e "console.log(JSON.parse(require('fs').readFileSync(0, 'utf-8')).version)")
-          PR_VERSION=$(node -e "console.log(JSON.parse(require('fs').readFileSync('package.json', 'utf-8')).version)")
-          
-          if [ "$PR_VERSION" = "$MAIN_VERSION" ]; then
-            echo "Version has not been bumped yet. Bumping patch version..."
-            npm version patch --no-git-tag-version
-            git add package.json package-lock.json
-            git commit -m "chore: bump version for dependabot update"
-            git push origin HEAD:${{ github.event.pull_request.head.ref }}
-          else
-            echo "Version is already bumped ($PR_VERSION vs main $MAIN_VERSION). Skipping bump."
-          fi
-
-      - name: Enable Auto-Merge
-        run: gh pr merge --auto --merge "${{ github.event.pull_request.html_url }}"
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}