@morscherlab/mint-sdk 1.3.0-beta.4 → 1.3.0-beta.5

package/src/components/index.ts

@@ -48,7 +48,8 @@ export { default as GeneratedResultRenderer } from './GeneratedResultRenderer.vu
 export { default as GeneratedPlotlyResult } from './GeneratedPlotlyResult.vue'
 export { default as ComponentBindingRenderer } from './ComponentBindingRenderer.vue'
 export { default as ControlWorkspaceView } from './ControlWorkspaceView.vue'
-export { default as DoseDesignWorkspaceView } from './DoseDesignWorkspaceView.vue'
+/** Complete ControlWorkspaceView page shell for WellPlate + DoseCalculator dose design. @deprecated Scheduled for removal in MINT 1.4; use `ControlWorkspaceView` instead, with `defineDoseDesignControlModel()`. */
+export { /** @deprecated Removed in MINT 1.4. */ default as DoseDesignWorkspaceView } from './DoseDesignWorkspaceView.vue'
 export { default as AppContainer } from './AppContainer.vue'
 export { default as PluginIcon } from './PluginIcon.vue'
 export { default as LayoutResizeHandle } from './LayoutResizeHandle.vue'
@@ -69,30 +70,43 @@ export { default as AdductText } from './AdductText.vue'
 export { default as SettingsModal } from './SettingsModal.vue'
 
 // Biological experiment components
-export { default as BioTemplateRenderer } from './BioTemplateRenderer.vue'
-export { default as BioTemplateExperimentWorkspaceView } from './BioTemplateExperimentWorkspaceView.vue'
-export { default as BioTemplatePackWorkspaceView } from './BioTemplatePackWorkspaceView.vue'
-export { default as BioTemplatePresetWorkspaceView } from './BioTemplatePresetWorkspaceView.vue'
+/** Render biology template envelopes with matching SDK components such as WellPlate, DoseCalculator, and DataFrame. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as BioTemplateRenderer } from './BioTemplateRenderer.vue'
+/** Current-experiment template workspace with load/save/reset controls and WellPlate/DataFrame/DoseCalculator previews. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as BioTemplateExperimentWorkspaceView } from './BioTemplateExperimentWorkspaceView.vue'
+/** Complete current-experiment workspace for a curated biology template pack with save/load controls and component-prop slots. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as BioTemplatePackWorkspaceView } from './BioTemplatePackWorkspaceView.vue'
+/** Complete editable biology template preset workspace for WellPlate/DoseCalculator, LC-MS, qPCR, generated controls, preview components, and current-experiment save wiring. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as BioTemplatePresetWorkspaceView } from './BioTemplatePresetWorkspaceView.vue'
 export { default as WellPlate } from './WellPlate.vue'
 export { default as PlateEditor } from './PlateEditor.vue'
-export { default as SampleLegend } from './SampleLegend.vue'
-export { default as ExperimentTimeline } from './ExperimentTimeline.vue'
+/** Clickable color-swatch legend for plate sample types, supporting selection, count display, add/remove, and custom color assignment. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as SampleLegend } from './SampleLegend.vue'
+/** Horizontal or vertical timeline of ordered protocol steps with status indicators, drag-to-reorder, and step-type iconography. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as ExperimentTimeline } from './ExperimentTimeline.vue'
 
 // Sample management components
-export { default as SampleSelector } from './SampleSelector.vue'
-/** Smart Group modal wired to the `useAutoGroup` engine. @deprecated Scheduled for removal in MINT 1.4; use `SmartGroupModal` instead. */
-export { default as AutoGroupModal } from './AutoGroupModal.vue'
-export { default as GroupAssigner } from './GroupAssigner.vue'
-export { default as SmartGroupModal } from './SmartGroupModal.vue'
-export { default as SmartGroupFieldRecipe } from './SmartGroupFieldRecipe.vue'
-export { default as SmartGroupManual } from './SmartGroupManual.vue'
+/** Interactive sample list with drag-and-drop group assignment, color labeling, and smart-group support. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as SampleSelector } from './SampleSelector.vue'
+/** Smart Group modal wired to the `useAutoGroup` engine. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as AutoGroupModal } from './AutoGroupModal.vue'
+/** Drag-and-drop two-zone assigner for splitting sample groups into control and treatment arms. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as GroupAssigner } from './GroupAssigner.vue'
+/** Smart Group modal with the auto Field Recipe and the manual cohort builder. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as SmartGroupModal } from './SmartGroupModal.vue'
+/** Smart Group auto mode: groups samples by a field recipe. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as SmartGroupFieldRecipe } from './SmartGroupFieldRecipe.vue'
+/** Smart Group manual mode: builds cohorts from selected samples. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as SmartGroupManual } from './SmartGroupManual.vue'
 
 // Lab/Experiment components
 export { default as MoleculeInput } from './MoleculeInput.vue'
 export { default as ConcentrationInput } from './ConcentrationInput.vue'
 export { default as DoseCalculator } from './DoseCalculator.vue'
-export { default as ReagentEditor, type ReagentDefinition } from './ReagentEditor.vue'
-export { default as ReagentList } from './ReagentList.vue'
+/** Editor for a single reagent definition with axis orientation, dilution-series generator, and position-count validation for 96/384-well plates. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as ReagentEditor, type ReagentDefinition } from './ReagentEditor.vue'
+/** Sortable, searchable table of experiment reagents showing lot number, expiry, storage conditions, and stock level with low-stock warnings. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as ReagentList } from './ReagentList.vue'
 export { default as SampleHierarchyTree } from './SampleHierarchyTree.vue'
 export { default as ProtocolStepEditor } from './ProtocolStepEditor.vue'
 
@@ -138,6 +152,7 @@ export { default as ArtifactSelectorModal } from './ArtifactSelectorModal.vue'
 export { default as GeneratedPathInput } from './GeneratedPathInput.vue'
 export { default as ArtifactSaveDialog } from './ArtifactSaveDialog.vue'
 export { default as ExperimentPopover } from './ExperimentPopover.vue'
-export { default as FitPanel } from './FitPanel.vue'
+/** Control panel for running a curve-fit job with progress bar, results table, and error display. @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
+export { /** @deprecated Removed in MINT 1.4. */ default as FitPanel } from './FitPanel.vue'
 
 export { default as FilePicker } from './FilePicker.vue'

package/src/composables/autoGroup/index.ts

@@ -1,5 +1,5 @@
 // Internal engine for `useAutoGroup` / `AutoGroupModal`. Deprecated: scheduled
-// for removal in MINT 1.4 together with `useAutoGroup`; `SmartGroupModal` replaces it.
+// for removal in MINT 1.4 together with `useAutoGroup`; no SDK replacement.
 
 export { splitMulti, pickPrimaryDelimiter } from './tokenize'
 export type { Delimiter } from './tokenize'

package/src/composables/index.ts

@@ -4,8 +4,6 @@ export {
   type ApiClientOptions,
   type UseApiReturn,
 } from './useApi'
-export { useAuth } from './useAuth'
-export { usePasskey } from './usePasskey'
 export { useTheme } from './useTheme'
 export { useToast } from './useToast'
 export { usePlatformContext } from './usePlatformContext'
@@ -32,11 +30,6 @@ export {
   type FieldState,
   type UseFormReturn,
 } from './useForm'
-export {
-  useWellPlateEditor,
-  type UseWellPlateEditorOptions,
-  type UseWellPlateEditorReturn,
-} from './useWellPlateEditor'
 export {
   useConcentrationUnits,
   type ConcentrationValue,

package/src/composables/useAutoGroup.ts

@@ -62,7 +62,7 @@ export { parseCSV } from './autoGroup/csv-shim'
 /**
  * Sample-grouping engine behind `AutoGroupModal`.
  *
- * @deprecated Scheduled for removal in MINT 1.4; use `SmartGroupModal` instead.
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
  */
 export function useAutoGroup() {
   const inputMode = ref<InputMode>('paste')

package/src/composables/useBioTemplateComponents.ts

@@ -67,14 +67,22 @@ export interface UseBioTemplateComponentsReturn {
   ) => Record<string, unknown> | undefined
 }
 
-/** Return component props grouped by SDK component name for direct WellPlate/DoseCalculator binding. */
+/**
+ * Return component props grouped by SDK component name for direct WellPlate/DoseCalculator binding.
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
+ */
 export function toBioTemplateComponentPropsByComponent(
   target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope,
 ): BioTemplateComponentPropsByComponent {
   return toTemplateComponentPropsByComponent(target)
 }
 
-/** Return the first props object for an SDK component, optionally restricted by template id or binding id. */
+/**
+ * Return the first props object for an SDK component, optionally restricted by template id or binding id.
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
+ */
 export function getBioTemplateComponentProps(
   target: BioTemplateEnvelope<unknown> | TemplateCollectionEnvelope,
   component: string,
@@ -83,7 +91,11 @@ export function getBioTemplateComponentProps(
   return getTemplateComponentProps(target, component, options)
 }
 
-/** Map built-in biology templates to SDK components such as WellPlate, DataFrame, DoseCalculator, and PlateEditor. */
+/**
+ * Map built-in biology templates to SDK components such as WellPlate, DataFrame, DoseCalculator, and PlateEditor.
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
+ */
 export function useBioTemplateComponents(
   target: BioTemplateComponentTarget
 ): UseBioTemplateComponentsReturn {

package/src/composables/useBioTemplateControls.ts

@@ -21,7 +21,11 @@ export type {
   BioTemplateControlTarget,
 }
 
-/** Build FormBuilder schema, AppSidebar panels, and defaults for a built-in biology template or preset. */
+/**
+ * Build FormBuilder schema, AppSidebar panels, and defaults for a built-in biology template or preset.
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
+ */
 export function useBioTemplateControls(
   target: BioTemplateControlTarget,
   options: ControlWorkspaceOptions = {},

package/src/composables/useBioTemplatePackWorkspace.ts

@@ -90,6 +90,8 @@ export interface UseBioTemplatePackWorkspaceReturn {
  * const pack = useBioTemplatePackWorkspace('cell-culture-screen')
  * await pack.loadCurrent()
  * ```
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
  */
 export function useBioTemplatePackWorkspace(
   packId: TemplatePackId | string,

package/src/composables/useBioTemplatePresetWorkspace.ts

@@ -119,7 +119,11 @@ export interface BioTemplatePresetWorkspaceBindings {
   getComponentProps: UseBioTemplateWorkspaceReturn['getComponentProps']
 }
 
-/** Create a complete editable WellPlate/DoseCalculator workspace for dose design from a built-in biology template preset with current-experiment save wiring. */
+/**
+ * Create a complete editable WellPlate/DoseCalculator workspace for dose design from a built-in biology template preset with current-experiment save wiring.
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
+ */
 export function useBioTemplatePresetWorkspace(
   presetId: TemplatePresetId,
   options: UseBioTemplatePresetWorkspaceOptions = {},

package/src/composables/useBioTemplateWorkspace.ts

@@ -60,7 +60,11 @@ export interface UseBioTemplateWorkspaceReturn extends BioTemplateWorkspaceCompo
   renderer: BioTemplateRendererBinding | null
 }
 
-/** One-stop wiring for BioTemplateRenderer, FormBuilder, AppSidebar, and template-aware SDK components. */
+/**
+ * One-stop wiring for BioTemplateRenderer, FormBuilder, AppSidebar, and template-aware SDK components.
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
+ */
 export function useBioTemplateWorkspace(
   target: BioTemplateWorkspaceTarget,
   options: ControlWorkspaceOptions = {}

package/src/composables/useExperimentSave.ts

@@ -86,7 +86,11 @@ export interface UseExperimentSaveReturn {
   requireCurrentExperimentId: () => number
 }
 
-/** Persists experiment design, analysis, and built-in template preset data through the platform API. */
+/**
+ * Persists experiment design, analysis, and built-in template preset data through the platform API.
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
+ */
 export function useExperimentSave(
   options: UseExperimentSaveOptions = {},
 ): UseExperimentSaveReturn {

package/src/composables/useGroupAssignment.ts

@@ -37,7 +37,11 @@ export interface UseGroupAssignmentReturn {
   clearAll: () => GroupAssignmentState
 }
 
-/** Shared two-zone group assignment model for control/treatment style workflows. */
+/**
+ * Shared two-zone group assignment model for control/treatment style workflows.
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
+ */
 export function useGroupAssignment(options: UseGroupAssignmentOptions): UseGroupAssignmentReturn {
   const groups = computed(() => [...toValue(options.groups)])
   const group1 = computed(() => [...toValue(options.group1)])

package/src/composables/useTemplateCollection.ts

@@ -72,7 +72,11 @@ export interface UseTemplateCollectionReturn {
   requireCurrentExperimentId: () => number
 }
 
-/** Manages a biology template collection in the current experiment's design_data. */
+/**
+ * Manages a biology template collection in the current experiment's design_data.
+ *
+ * @deprecated Scheduled for removal in MINT 1.4; no SDK replacement.
+ */
 export function useTemplateCollection(
   options: UseTemplateCollectionOptions = {},
 ): UseTemplateCollectionReturn {

package/src/index.ts

@@ -34,7 +34,7 @@ export * from './jobs'
 // Experimental generated analysis workspace
 export * from './generated/schema'
 
-// LCMS sequence helpers. Deprecated: scheduled for removal in MINT 1.4 (moves to the mld-ms plugins).
+// LCMS sequence helpers. Deprecated: scheduled for removal in MINT 1.4, no SDK replacement.
 export * from './lcms'
 
 // Utils

package/src/lcms.ts

@@ -1,11 +1,11 @@
 import type { LcmsPlateCell, LcmsPlateType } from './utils/rack'
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export type LcmsPolarity = 'POS' | 'NEG' | 'BOTH'
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export type LcmsContainerType = 'VIAL' | 'PLATE'
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export interface LcmsSequenceItem {
   sample_type: string
   file_name: string
@@ -16,14 +16,14 @@ export interface LcmsSequenceItem {
   injection_volume: number
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export interface LcmsSequenceTableColumn {
   key: keyof LcmsSequenceItem | 'index' | 'actions'
   label: string
   align?: 'left' | 'right'
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export const DEFAULT_LCMS_SEQUENCE_COLUMNS: LcmsSequenceTableColumn[] = [
   { key: 'index', label: '#' },
   { key: 'sample_type', label: 'Type' },
@@ -33,7 +33,7 @@ export const DEFAULT_LCMS_SEQUENCE_COLUMNS: LcmsSequenceTableColumn[] = [
   { key: 'injection_volume', label: 'Inj Vol', align: 'right' },
 ]
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export function extractLcmsCommonPrefix(fileNames: readonly string[]): string {
   if (fileNames.length === 0) return ''
   const stripped = fileNames.map(fileName => fileName.replace(/_\d{3}$/, ''))
@@ -52,7 +52,7 @@ export function extractLcmsCommonPrefix(fileNames: readonly string[]): string {
   return common
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export function extractLcmsSampleName(fileName: string, prefix = ''): string {
   let name = fileName.replace(/_\d{3}$/, '')
   if (prefix && name.startsWith(prefix)) {
@@ -62,12 +62,12 @@ export function extractLcmsSampleName(fileName: string, prefix = ''): string {
   return name || fileName
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export function lcmsWellIdFromPosition(position: string): string {
   return position.includes(':') ? position.split(':').pop() ?? position : position
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export function inferLcmsPlateTypeFromWellIds(wellIds: readonly string[]): LcmsPlateType | null {
   let maxCol = 0
   let maxRow = 0
@@ -81,7 +81,7 @@ export function inferLcmsPlateTypeFromWellIds(wellIds: readonly string[]): LcmsP
   return maxCol <= 9 && maxRow <= 6 ? '54vial' : '96well'
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export function reconstructLcmsPlateCellsFromSequenceItems(
   items: readonly LcmsSequenceItem[],
 ): { cells: LcmsPlateCell[]; plateType: LcmsPlateType } | null {
@@ -112,7 +112,7 @@ export function reconstructLcmsPlateCellsFromSequenceItems(
   return { cells, plateType }
 }
 
-/** @deprecated Scheduled for removal in MINT 1.4; LC-MS helpers move to the mld-ms plugins. */
+/** @deprecated Scheduled for removal in MINT 1.4; no SDK replacement. */
 export function basenameFromWindowsPath(path: string | null | undefined): string {
   if (!path) return ''
   return path.split(/[\\/]/).pop() ?? path

package/src/styles/components/app-top-bar.css

@@ -39,29 +39,18 @@
   flex-shrink: 0;
 }
 
+/* Slotted logos sized above 32px shrink to fit instead of turning into a 32x36 tile. */
+.mint-topbar__identity > * {
+  max-width: 100%;
+  max-height: 100%;
+}
+
 /* The 36px plugin tile would push the bar past 52px; the bar uses the 32px control height. */
 .mint-topbar__identity .mint-plugin-icon--topbar {
   width: 2rem;
   height: 2rem;
 }
 
-/* Integrated: the tile joins the static identity as a 20px mark (icon + name + version). */
-.mint-topbar__brand:has(+ .mint-topbar__plugin-identity) .mint-topbar__identity {
-  width: auto;
-  padding-left: 0.125rem;
-}
-
-.mint-topbar__brand:has(+ .mint-topbar__plugin-identity) .mint-plugin-icon--topbar {
-  width: 1.25rem;
-  height: 1.25rem;
-  border-radius: var(--radius-sm);
-}
-
-.mint-topbar__brand:has(+ .mint-topbar__plugin-identity) .mint-plugin-icon--topbar :is(.mint-plugin-icon__svg, .mint-plugin-icon__img) {
-  width: 0.75rem;
-  height: 0.75rem;
-}
-
 /* Centered section — absolute so asymmetric left/right weight never shifts the
    pill-nav off the topbar midline. Pointer-events: none lets the pill-nav
    overlay the background while remaining interactive via its own children. */
@@ -118,7 +107,7 @@
   color: var(--text-primary);
 }
 
-/* Static plugin identity: name + mono version, not a control (5a) */
+/* Static plugin identity: name only, not a control (5a) */
 .mint-topbar__plugin-identity {
   display: inline-flex;
   align-items: baseline;
@@ -136,19 +125,6 @@
   text-overflow: ellipsis;
 }
 
-.mint-topbar__plugin-version {
-  font-family: var(--font-mono);
-  font-size: 0.6875rem;
-  color: var(--text-secondary);
-}
-
-.mint-topbar__divider {
-  width: 1px;
-  height: 1.25rem;
-  flex-shrink: 0;
-  background-color: var(--border-color);
-}
-
 /* Variant: card - inline card with margins and rounded corners */
 .mint-topbar--card {
   width: calc(100% - 2rem);

package/src/styles/components/empty-state.css

@@ -115,8 +115,9 @@
   color: var(--text-muted);
 }
 
-/* Action */
-.mint-empty-state--illustrated .mint-empty-state__action {
+/* Action — slotted content sits in a block so a child's own larger top margin collapses into this one. */
+.mint-empty-state--illustrated .mint-empty-state__action,
+.mint-empty-state--illustrated .mint-empty-state__content {
   margin-top: 0.625rem;
 }
 

package/src/styles/components/well-plate.css

@@ -59,10 +59,9 @@
 /* Header cells */
 .mint-well-plate__col-header,
 .mint-well-plate__row-header {
-  font-family: var(--font-mono);
-  font-weight: 400;
+  font-weight: 500;
   text-align: center;
-  color: var(--text-secondary);
+  color: var(--text-muted);
 }
 
 .mint-well-plate__row-header {
@@ -83,9 +82,8 @@
   font-weight: 500;
   cursor: pointer;
   transition: background-color 0.15s ease, border-color 0.15s ease, box-shadow 0.15s ease, opacity 0.15s ease;
-  /* Empty well: solid hairline, no dash — dozens of dashed rings read as noise (2b). */
-  background-color: var(--bg-card);
-  border: 1px solid color-mix(in srgb, var(--text-secondary) 35%, var(--border-color));
+  background-color: var(--bg-tertiary);
+  border: 1px dashed var(--border-color);
 }
 
 .mint-well-plate__well--rounded {
@@ -97,7 +95,7 @@
 }
 
 .mint-well-plate__well--filled {
-  background-color: var(--bg-tertiary);
+  border-style: solid;
 }
 
 .mint-well-plate__well--disabled {
@@ -106,29 +104,27 @@
 }
 
 /* Well states */
-/* Neutral ring + shape only, so a ring never vanishes into a sample color (2b). */
 .mint-well-plate__well--selected {
-  box-shadow: 0 0 0 2px var(--bg-card), 0 0 0 3.5px var(--text-primary);
+  box-shadow: 0 0 0 2px var(--mint-success), 0 0 0 3px var(--bg-card);
 }
 
 .mint-well-plate__well--drag-over {
   box-shadow: 0 0 0 2px var(--color-primary);
-  background-color: var(--color-primary-soft);
+  background-color: color-mix(in srgb, var(--color-primary) 20%, transparent);
 }
 
 .mint-well-plate__well--hovered {
-  box-shadow: 0 0 0 1px var(--text-secondary);
+  box-shadow: 0 0 0 2px color-mix(in srgb, var(--mint-success) 50%, transparent);
 }
 
-/* !important: wellStyle() sets an inline solid `border` on every draggable well. */
 .mint-well-plate__well--drag-source {
-  border-style: dashed !important;
+  box-shadow: 0 0 0 2px var(--mint-warning);
   opacity: 0.5;
 }
 
 .mint-well-plate__well--drag-target {
-  box-shadow: 0 0 0 2px var(--bg-card), 0 0 0 3.5px var(--color-primary);
-  background-color: var(--color-primary-soft);
+  box-shadow: 0 0 0 2px var(--mint-success), 0 0 0 3px var(--bg-card);
+  background-color: color-mix(in srgb, var(--mint-success) 20%, transparent);
 }
 
 /* Optional semantic classes for `wellClass` callbacks. */
@@ -168,18 +164,6 @@
   color: var(--text-primary);
 }
 
-/* Q / i marker glyph when the centre holds a label or well ID (iQC has no other cue) */
-.mint-well-plate__corner-glyph {
-  position: absolute;
-  top: 3px;
-  left: 6px;
-  font-size: 10px;
-  font-weight: 700;
-  line-height: 1;
-  pointer-events: none;
-  color: var(--text-primary);
-}
-
 /* Well ID text */
 .mint-well-plate__well-id {
   font-weight: 500;
@@ -268,34 +252,21 @@
 /* Badge (injection count / custom method indicator) */
 .mint-well-plate__badge {
   position: absolute;
-  top: -5px;
-  right: -5px;
-  box-sizing: border-box;
-  min-width: 14px;
-  height: 14px;
-  padding: 0 3px;
+  top: -4px;
+  right: -4px;
+  width: 16px;
+  height: 16px;
   border-radius: 9999px;
-  box-shadow: 0 0 0 2px var(--bg-card);
-  font-family: var(--font-mono);
-  font-size: 9px;
+  font-size: 10px;
   font-weight: 700;
   display: flex;
   align-items: center;
   justify-content: center;
-  color: var(--bg-card);
+  color: white;
   pointer-events: none;
   line-height: 1;
 }
 
-/* Custom method: a plain dot (7a) */
-.mint-well-plate__badge--dot {
-  top: -2px;
-  right: -2px;
-  min-width: 8px;
-  height: 8px;
-  padding: 0;
-}
-
 /* Sample type legend bar */
 .mint-well-plate__sample-legend {
   margin-top: 0.5rem;
@@ -312,23 +283,15 @@
 }
 
 .mint-well-plate__sample-legend-dot {
-  display: inline-flex;
-  align-items: center;
-  justify-content: center;
-  box-sizing: border-box;
   width: 0.875rem;
   height: 0.875rem;
   border-radius: var(--radius-sm);
   flex-shrink: 0;
-  font-family: var(--font-mono);
-  font-size: 0.625rem;
-  font-weight: 600;
-  line-height: 1;
 }
 
 .mint-well-plate__sample-legend-text {
   font-size: 0.75rem;
-  color: var(--text-secondary);
+  color: var(--text-muted);
 }
 
 /* Empty / loading / error placeholder host (content comes from EmptyState) */

package/src/types/auth.ts

@@ -20,44 +20,3 @@ export interface UserInfo {
   roleObj?: RoleInfo | null
   isActive: boolean
 }
-
-// Login response from API
-export interface LoginResponse {
-  access_token: string
-  token_type: string
-  expires_in: number
-}
-
-// Token verification response
-export interface TokenVerifyResponse {
-  valid: boolean
-  username: string | null
-  expires_at: string | null
-  /** Platform 1.3+: `access_token` for a personal access token. */
-  token_type?: 'session' | 'access_token'
-  /** Platform 1.3+: true for a read-only personal access token. */
-  read_only?: boolean
-}
-
-// Registration request
-export interface RegisterRequest {
-  username: string
-  password: string
-  email?: string
-  shortname?: string
-}
-
-// Profile update request
-export interface UpdateProfileRequest {
-  email?: string
-  shortname?: string
-  current_password?: string
-  new_password?: string
-}
-
-// Passkey credential info
-export interface CredentialInfo {
-  credential_id: string
-  device_name: string | null
-  created_at: string
-}

package/src/types/index.ts

@@ -298,11 +298,6 @@ export type {
 export type {
   AuthConfig,
   UserInfo,
-  LoginResponse,
-  TokenVerifyResponse,
-  RegisterRequest,
-  UpdateProfileRequest,
-  CredentialInfo,
 } from './auth'
 
 // Platform types