@morscherlab/mint-sdk 1.1.8 → 1.1.10

package/dist/composables/index.d.ts

@@ -44,7 +44,7 @@ export { detectDelimiter, parseDelimitedText, readFileAsText, useFileImport, val
 export { useSelectionLimit, type SelectionLimitSource, type UseSelectionLimitOptions, type UseSelectionLimitReturn, } from './useSelectionLimit';
 export { useListSelection, type ListSelectionSource, type ListSelectionValue, type UseListSelectionOptions, type UseListSelectionReturn, type WidenListSelectionValue, } from './useListSelection';
 export { useGroupAssignment, type GroupAssignmentSource, type GroupAssignmentState, type GroupAssignmentZone, type UseGroupAssignmentOptions, type UseGroupAssignmentReturn, } from './useGroupAssignment';
-export { useSampleGroups, type DisplaySampleSubGroup, type SampleGroupSource, type SampleMajorGroup, type UseSampleGroupsOptions, type UseSampleGroupsReturn, } from './useSampleGroups';
+export { useSampleGroups, type DisplaySampleSubGroup, type SampleGroupNode, type SampleGroupSource, type SampleMajorGroup, type UseSampleGroupsOptions, type UseSampleGroupsReturn, } from './useSampleGroups';
 export { useExpansionSet, type ExpansionSetSource, type UseExpansionSetOptions, type UseExpansionSetReturn, } from './useExpansionSet';
 export { compareSortValues, useSortedItems, type CompareSortValuesOptions, type SortComparator, type SortComparatorContext, type SortDescriptor, type SortedItemsSource, type SortOrder, type UseSortedItemsOptions, type UseSortedItemsReturn, } from './useSortedItems';
 export { candidateMatchesSearch, normalizeSearchQuery, useTextSearch, type TextSearchCandidate, type TextSearchSource, type UseTextSearchOptions, type UseTextSearchReturn, } from './useTextSearch';

package/dist/composables/index.js

@@ -1,7 +1,7 @@
 import { a as SORT_OPTIONS, c as formatExperimentDate, d as resolveExperimentCode, i as EXPERIMENT_STATUS_VARIANT_MAP, l as formatExperimentStatus, n as EXPERIMENT_STATUS_LABELS, o as datePresetToISO, p as useEventListener, r as EXPERIMENT_STATUS_OPTIONS, s as experimentIdFromRoute, t as DATE_PRESET_OPTIONS, u as getExperimentStatusVariant } from "../experiment-utils-CLnzPPq5.js";
 import { r as useRequestSyncState } from "../EmptyState-p90quq8Z.js";
 import { A as useConcentrationUnits, B as useAnalysisArtifacts, C as controlsToViewIds, D as getTypeDefault, E as getFieldRegistryEntry, Et as useSelectionLimit, F as ATOMIC_WEIGHTS, G as resolveCurrentPluginId, I as useChemicalFormula, J as usePluginJobs, K as createGeneratedAnalysisTransport, N as useSequenceUtils, S as controlsToTopBarSettingsConfig, St as useTimeUtils, T as getDefaultControlView, Tt as useListSelection, _ as controlsToFormSchema, _t as isTimeInRange, a as defineDoseCalculatorControlProps, b as controlsToSettingsSchema, bt as snapToSlot, c as defineWellPlateDoseComponentBindings, ct as compareTime, d as defineControlModel, dt as findNearestTimeSlotIndex, ft as formatDuration, gt as generateTimeSlots, h as controlValuesToComponentProps, ht as fromMinutes, i as useControlSchema, l as defineWellPlateDoseControlProps, lt as durationMinutes, m as controlValuesToComponentBindingsById, mt as formatTimeSlot, n as defineControls, o as defineDoseDesignControlModel, p as controlValuesToComponentBindings, pt as formatTime, q as useGeneratedAnalysis, r as getControlDefaults, s as defineWellPlateControlProps, st as addMinutes, t as defineControlComponentBindings, u as useControlWorkspace, ut as findAvailableSlots, v as controlsToSectionFormSchema, vt as parseTime, w as controlsToViewItems, x as controlsToSidebarPanels, xt as toMinutes, y as controlsToSectionFormSchemas, yt as rangesOverlap } from "../useControlSchema-BMVb2XIQ.js";
-import { A as extractSamplesFromDesignData, B as useJobsStatusTray, D as readFileAsText, E as parseDelimitedText, F as unwrapExperimentDesignData, G as useAppExperiment, H as DEFAULT_MOBILE_VIEWPORT_QUERY, I as DEFAULT_COLORS, J as candidateMatchesSearch, K as useTheme, L as useWellPlateEditor, N as extractSampleNamesFromDesignData, O as useFileImport, P as extractSampleOptionsFromDesignData, Q as useSortedItems, R as useDoseCalculator, T as detectDelimiter, U as useMobileSupportGate, V as usePluginJobCenter, W as APP_EXPERIMENT_KEY, X as useTextSearch, Y as normalizeSearchQuery, Z as compareSortValues, _ as useScheduleDrag, a as useReagentSeries, b as useExpansionSet, c as useBioTemplatePresetWorkspace, d as getBioTemplateComponentProps, f as toBioTemplateComponentPropsByComponent, g as useExperimentSave, h as useTemplateCollection, i as generateDilutionSeries, j as useAutoGroup, k as validateImportFile, l as useBioTemplatePackWorkspace, m as useBioTemplateControls, n as DEFAULT_PRESETS, o as useGroupAssignment, p as useBioTemplateComponents, q as useToast, r as DEFAULT_UNITS, s as useRackEditor, t as useProtocolTemplates, u as useBioTemplateWorkspace, v as useExperimentSamples, x as useSampleGroups, y as useExperimentData, z as combinePluginJobSources } from "../useProtocolTemplates-BMt0LlXf.js";
+import { $ as compareSortValues, A as useFileImport, B as useDoseCalculator, D as detectDelimiter, F as extractSampleNamesFromDesignData, G as useMobileSupportGate, H as useJobsStatusTray, I as extractSampleOptionsFromDesignData, J as useTheme, K as APP_EXPERIMENT_KEY, L as unwrapExperimentDesignData, M as extractSamplesFromDesignData, N as useAutoGroup, O as parseDelimitedText, Q as useTextSearch, R as DEFAULT_COLORS, U as usePluginJobCenter, V as combinePluginJobSources, W as DEFAULT_MOBILE_VIEWPORT_QUERY, X as candidateMatchesSearch, Y as useToast, Z as normalizeSearchQuery, _ as useScheduleDrag, a as useReagentSeries, b as useExpansionSet, c as useBioTemplatePresetWorkspace, d as getBioTemplateComponentProps, et as useSortedItems, f as toBioTemplateComponentPropsByComponent, g as useExperimentSave, h as useTemplateCollection, i as generateDilutionSeries, j as validateImportFile, k as readFileAsText, l as useBioTemplatePackWorkspace, m as useBioTemplateControls, n as DEFAULT_PRESETS, o as useGroupAssignment, p as useBioTemplateComponents, q as useAppExperiment, r as DEFAULT_UNITS, s as useRackEditor, t as useProtocolTemplates, u as useBioTemplateWorkspace, v as useExperimentSamples, x as useSampleGroups, y as useExperimentData, z as useWellPlateEditor } from "../useProtocolTemplates-D3IZKLqr.js";
 import { r as useApi, t as AuthenticationRequiredError } from "../useApi-CDBq6z23.js";
 import { i as usePlatformContext, n as evaluateCondition, r as useForm, t as useFormBuilder } from "../useFormBuilder-DG3HOFGA.js";
 import { t as ANALYSIS_FILE_ARTIFACT_SCHEMA } from "../analysisArtifactTypes-DQ0MjwHZ.js";

package/dist/composables/useAutoGroup.d.ts

@@ -77,6 +77,9 @@ export declare function useAutoGroup(): {
     setClassDisposition: (key: string, disposition: ClassDisposition) => void;
     setClassDispositions: (predicate: (c: SampleClass) => boolean, disposition: ClassDisposition) => void;
     toggleGroupBy: (key: string, idx: number) => void;
+    moveGroupBy: (key: string, idx: number, direction: "up" | "down") => void;
+    toggleGroupByField: (fieldKey: string) => void;
+    moveGroupByField: (fieldKey: string, direction: "up" | "down") => void;
     setRole: (key: string, idx: number, role: ColumnRole) => void;
     setColumnName: (key: string, idx: number, name: string) => void;
     setValueOps: (key: string, idx: number, ops: ValueOps) => void;

package/dist/composables/usePlatformContext.d.ts

@@ -32,6 +32,7 @@ export declare function usePlatformContext(options?: PlatformContextOptions): {
             id: string;
             name: string;
             version: string;
+            plugin_type?: string | undefined;
             description?: string | undefined;
             icon?: string | undefined;
             color?: string | undefined;
@@ -92,6 +93,7 @@ export declare function usePlatformContext(options?: PlatformContextOptions): {
             id: string;
             name: string;
             version: string;
+            plugin_type?: string | undefined;
             description?: string | undefined;
             icon?: string | undefined;
             color?: string | undefined;
@@ -152,6 +154,7 @@ export declare function usePlatformContext(options?: PlatformContextOptions): {
         id: string;
         name: string;
         version: string;
+        plugin_type?: string | undefined;
         description?: string | undefined;
         icon?: string | undefined;
         color?: string | undefined;

package/dist/composables/useSampleGroups.d.ts

@@ -12,6 +12,27 @@ export interface SampleMajorGroup {
     subGroups: DisplaySampleSubGroup[];
     allSamples: string[];
 }
+/**
+ * One node of the sample-group display hierarchy. Interior nodes are path
+ * prefixes of the group names (`Liver`, `Liver / High`); leaves carry the
+ * concrete group. A group's `name` stays the full path on its leaf because
+ * every mutation — drag, delete, colour, selection — resolves groups by name.
+ */
+export interface SampleGroupNode {
+    /** Unique across the tree; use for `:key` and expansion state. */
+    key: string;
+    /** This node's own path segment, not the full path. */
+    label: string;
+    color: string;
+    displayBg: string;
+    displayBorder: string;
+    /** Every sample beneath this node, in group order. */
+    allSamples: string[];
+    /** Empty for leaves. */
+    children: SampleGroupNode[];
+    /** Present only on leaves. */
+    group?: DisplaySampleSubGroup;
+}
 export interface UseSampleGroupsOptions {
     groups: SampleGroupSource<readonly SampleGroup[]>;
     samples?: SampleGroupSource<readonly string[]>;
@@ -21,6 +42,10 @@ export interface UseSampleGroupsOptions {
 export interface UseSampleGroupsReturn {
     groups: ComputedRef<SampleGroup[]>;
     separator: ComputedRef<string>;
+    /** Full N-layer display hierarchy; one level per group-name segment. */
+    groupTree: ComputedRef<SampleGroupNode[]>;
+    /** Deepest layer count across the tree (1 when groups are flat). */
+    maxDepth: ComputedRef<number>;
     hierarchicalGroups: ComputedRef<SampleMajorGroup[]>;
     showHierarchy: ComputedRef<boolean>;
     groupedSamples: ComputedRef<Set<string>>;

package/dist/index.js

@@ -1,9 +1,9 @@
 import { a as SORT_OPTIONS, c as formatExperimentDate, d as resolveExperimentCode, f as BaseModal_default, i as EXPERIMENT_STATUS_VARIANT_MAP, l as formatExperimentStatus, m as BaseButton_default, n as EXPERIMENT_STATUS_LABELS, o as datePresetToISO, p as useEventListener, r as EXPERIMENT_STATUS_OPTIONS, s as experimentIdFromRoute, t as DATE_PRESET_OPTIONS, u as getExperimentStatusVariant } from "./experiment-utils-CLnzPPq5.js";
 import { a as BaseSelect_default, i as BasePill_default, n as Skeleton_default, r as useRequestSyncState, s as BaseInput_default, t as EmptyState_default } from "./EmptyState-p90quq8Z.js";
 import { $ as normalizeJobState, A as useConcentrationUnits, At as BaseCheckbox_default, B as useAnalysisArtifacts, C as controlsToViewIds, Ct as DatePicker_default, D as getTypeDefault, Dt as BaseSlider_default, E as getFieldRegistryEntry, Et as useSelectionLimit, F as ATOMIC_WEIGHTS, G as resolveCurrentPluginId, I as useChemicalFormula, It as BaseTextarea_default, J as usePluginJobs, K as createGeneratedAnalysisTransport, L as GeneratedPathInput_default, M as SequenceInput_default, N as useSequenceUtils, O as ConcentrationInput_default, Ot as BaseRadioGroup_default, P as FormulaInput_default, Q as normalizeJobPercent, S as controlsToTopBarSettingsConfig, St as useTimeUtils, T as getDefaultControlView, Tt as useListSelection, X as isTerminalJobStatus, Y as isActiveJobStatus, Z as jobStatusLabel, _ as controlsToFormSchema, _t as isTimeInRange, a as defineDoseCalculatorControlProps, at as TagsInput_default, b as controlsToSettingsSchema, bt as snapToSlot, c as defineWellPlateDoseComponentBindings, ct as compareTime, d as defineControlModel, dt as findNearestTimeSlotIndex, et as resolveJobCapabilities, ft as formatDuration, gt as generateTimeSlots, h as controlValuesToComponentProps, ht as fromMinutes, i as useControlSchema, it as NumberInput_default, j as MoleculeInput_default, jt as Tooltip_default, k as UnitInput_default, kt as BaseToggle_default, l as defineWellPlateDoseControlProps, lt as durationMinutes, m as controlValuesToComponentBindingsById, mt as formatTimeSlot, n as defineControls, nt as AlertBox_default, o as defineDoseDesignControlModel, ot as TimePicker_default, p as controlValuesToComponentBindings, pt as formatTime, q as useGeneratedAnalysis, r as getControlDefaults, rt as FileUploader_default, s as defineWellPlateControlProps, st as addMinutes, t as defineControlComponentBindings, tt as DateTimePicker_default, u as useControlWorkspace, ut as findAvailableSlots, v as controlsToSectionFormSchema, vt as parseTime, w as controlsToViewItems, wt as MultiSelect_default, x as controlsToSidebarPanels, xt as toMinutes, y as controlsToSectionFormSchemas, yt as rangesOverlap, z as ArtifactSelectorModal_default } from "./useControlSchema-BMVb2XIQ.js";
-import { $ as SmartGroupFieldRecipe_default, A as ProtocolStepEditor_default, At as AppToastContainer_default, B as Breadcrumb_default, C as estimateSequenceRemainingSeconds, Ct as AppPluginSwitcher_default, D as sequenceSamplesRemaining, Dt as ThemeToggle_default, E as sequenceProgressPercent, Et as CollapsibleCard_default, F as RackEditor_default, Ft as BaseTabs_default, G as AppContainer_default, H as ProgressBar_default, I as BioTemplatePresetWorkspaceView_default, It as ColorSlider_default, J as ComponentBindingRenderer_default, K as DoseDesignWorkspaceView_default, L as BioTemplatePackWorkspaceView_default, M as ReagentEditor_default, Mt as Calendar_default, N as SmartGroupModal_default, Nt as DropdownButton_default, O as ChemicalFormula_default, Ot as ActionMenu_default, P as GroupAssigner_default, Pt as SegmentedControl_default, Q as SmartGroupManual_default, R as BioTemplateExperimentWorkspaceView_default, S as estimateSequenceFinishDate, St as AppTopBar_default, T as formatSequenceRemaining, Tt as PluginIcon_default, U as StatusIndicator_default, V as Avatar_default, W as Divider_default, X as SampleSelector_default, Y as ScheduleCalendar_default, Z as AutoGroupModal_default, _ as reconstructLcmsPlateCellsFromSequenceItems, _t as AppLayout_default, a as ResourceCard_default, at as DoseCalculator_default, b as InstrumentAlertLog_default, bt as FormActions_default, c as BatchProgressList_default, ct as GeneratedResultRenderer_default, d as DEFAULT_LCMS_SEQUENCE_COLUMNS, dt as LoadingSpinner_default, et as ReagentList_default, f as basenameFromWindowsPath, ft as generatedJobDefaults, g as lcmsWellIdFromPosition, gt as MobileSupportGate_default, h as inferLcmsPlateTypeFromWellIds, ht as PluginWorkspaceView_default, i as SectionCard_default, it as ExperimentTimeline_default, j as SampleHierarchyTree_default, jt as DataFrame_default, k as ScientificNumber_default, kt as IconButton_default, l as AuditTrail_default, lt as GeneratedPlotlyResult_default, m as extractLcmsSampleName, mt as normalizeGeneratedJobInput, n as FitPanel_default, nt as SampleLegend_default, o as TimeRangeInput_default, ot as GeneratedPluginView_default, p as extractLcmsCommonPrefix, pt as generatedJobFormSchema, q as ControlWorkspaceView_default, r as ArtifactSaveDialog_default, rt as WellPlate_default, s as ExperimentDataViewer_default, st as JobsStatusTray_default, tt as PlateMapEditor_default, u as LcmsSequenceTable_default, ut as ChartContainer_default, v as InstrumentStatusCard_default, vt as AppSidebar_default, w as formatSequenceEta, wt as AppAvatarMenu_default, x as SequenceProgressBar_default, xt as StepWizard_default, y as InstrumentStateBadge_default, yt as FormBuilder_default, z as BioTemplateRenderer_default } from "./components-CDomhGSj.js";
+import { $ as SmartGroupFieldRecipe_default, A as ProtocolStepEditor_default, At as AppToastContainer_default, B as Breadcrumb_default, C as estimateSequenceRemainingSeconds, Ct as AppPluginSwitcher_default, D as sequenceSamplesRemaining, Dt as ThemeToggle_default, E as sequenceProgressPercent, Et as CollapsibleCard_default, F as RackEditor_default, Ft as BaseTabs_default, G as AppContainer_default, H as ProgressBar_default, I as BioTemplatePresetWorkspaceView_default, It as ColorSlider_default, J as ComponentBindingRenderer_default, K as DoseDesignWorkspaceView_default, L as BioTemplatePackWorkspaceView_default, M as ReagentEditor_default, Mt as Calendar_default, N as SmartGroupModal_default, Nt as DropdownButton_default, O as ChemicalFormula_default, Ot as ActionMenu_default, P as GroupAssigner_default, Pt as SegmentedControl_default, Q as SmartGroupManual_default, R as BioTemplateExperimentWorkspaceView_default, S as estimateSequenceFinishDate, St as AppTopBar_default, T as formatSequenceRemaining, Tt as PluginIcon_default, U as StatusIndicator_default, V as Avatar_default, W as Divider_default, X as SampleSelector_default, Y as ScheduleCalendar_default, Z as AutoGroupModal_default, _ as reconstructLcmsPlateCellsFromSequenceItems, _t as AppLayout_default, a as ResourceCard_default, at as DoseCalculator_default, b as InstrumentAlertLog_default, bt as FormActions_default, c as BatchProgressList_default, ct as GeneratedResultRenderer_default, d as DEFAULT_LCMS_SEQUENCE_COLUMNS, dt as LoadingSpinner_default, et as ReagentList_default, f as basenameFromWindowsPath, ft as generatedJobDefaults, g as lcmsWellIdFromPosition, gt as MobileSupportGate_default, h as inferLcmsPlateTypeFromWellIds, ht as PluginWorkspaceView_default, i as SectionCard_default, it as ExperimentTimeline_default, j as SampleHierarchyTree_default, jt as DataFrame_default, k as ScientificNumber_default, kt as IconButton_default, l as AuditTrail_default, lt as GeneratedPlotlyResult_default, m as extractLcmsSampleName, mt as normalizeGeneratedJobInput, n as FitPanel_default, nt as SampleLegend_default, o as TimeRangeInput_default, ot as GeneratedPluginView_default, p as extractLcmsCommonPrefix, pt as generatedJobFormSchema, q as ControlWorkspaceView_default, r as ArtifactSaveDialog_default, rt as WellPlate_default, s as ExperimentDataViewer_default, st as JobsStatusTray_default, tt as PlateMapEditor_default, u as LcmsSequenceTable_default, ut as ChartContainer_default, v as InstrumentStatusCard_default, vt as AppSidebar_default, w as formatSequenceEta, wt as AppAvatarMenu_default, x as SequenceProgressBar_default, xt as StepWizard_default, y as InstrumentStateBadge_default, yt as FormBuilder_default, z as BioTemplateRenderer_default } from "./components-HXV-ZkBg.js";
 import { s as FormField_default, t as SettingsModal_default } from "./SettingsModal-D7LFUokT.js";
-import { A as extractSamplesFromDesignData, B as useJobsStatusTray, C as hexToHsl, D as readFileAsText, E as parseDelimitedText, F as unwrapExperimentDesignData, G as useAppExperiment, H as DEFAULT_MOBILE_VIEWPORT_QUERY, I as DEFAULT_COLORS, J as candidateMatchesSearch, K as useTheme, L as useWellPlateEditor, N as extractSampleNamesFromDesignData, O as useFileImport, P as extractSampleOptionsFromDesignData, Q as useSortedItems, R as useDoseCalculator, S as deriveShade, T as detectDelimiter, U as useMobileSupportGate, V as usePluginJobCenter, W as APP_EXPERIMENT_KEY, X as useTextSearch, Y as normalizeSearchQuery, Z as compareSortValues, _ as useScheduleDrag, a as useReagentSeries, b as useExpansionSet, c as useBioTemplatePresetWorkspace, d as getBioTemplateComponentProps, f as toBioTemplateComponentPropsByComponent, g as useExperimentSave, h as useTemplateCollection, i as generateDilutionSeries, j as useAutoGroup, k as validateImportFile, l as useBioTemplatePackWorkspace, m as useBioTemplateControls, n as DEFAULT_PRESETS, o as useGroupAssignment, p as useBioTemplateComponents, q as useToast, r as DEFAULT_UNITS, s as useRackEditor, t as useProtocolTemplates, u as useBioTemplateWorkspace, v as useExperimentSamples, w as hslToHex, x as useSampleGroups, y as useExperimentData, z as combinePluginJobSources } from "./useProtocolTemplates-BMt0LlXf.js";
+import { $ as compareSortValues, A as useFileImport, B as useDoseCalculator, D as detectDelimiter, E as hslToHex, F as extractSampleNamesFromDesignData, G as useMobileSupportGate, H as useJobsStatusTray, I as extractSampleOptionsFromDesignData, J as useTheme, K as APP_EXPERIMENT_KEY, L as unwrapExperimentDesignData, M as extractSamplesFromDesignData, N as useAutoGroup, O as parseDelimitedText, Q as useTextSearch, R as DEFAULT_COLORS, T as hexToHsl, U as usePluginJobCenter, V as combinePluginJobSources, W as DEFAULT_MOBILE_VIEWPORT_QUERY, X as candidateMatchesSearch, Y as useToast, Z as normalizeSearchQuery, _ as useScheduleDrag, a as useReagentSeries, b as useExpansionSet, c as useBioTemplatePresetWorkspace, d as getBioTemplateComponentProps, et as useSortedItems, f as toBioTemplateComponentPropsByComponent, g as useExperimentSave, h as useTemplateCollection, i as generateDilutionSeries, j as validateImportFile, k as readFileAsText, l as useBioTemplatePackWorkspace, m as useBioTemplateControls, n as DEFAULT_PRESETS, o as useGroupAssignment, p as useBioTemplateComponents, q as useAppExperiment, r as DEFAULT_UNITS, s as useRackEditor, t as useProtocolTemplates, u as useBioTemplateWorkspace, v as useExperimentSamples, w as deriveShade, x as useSampleGroups, y as useExperimentData, z as useWellPlateEditor } from "./useProtocolTemplates-D3IZKLqr.js";
 import { a as colorPalettes, i as useAuthStore, o as useSettingsStore, r as useApi, t as AuthenticationRequiredError } from "./useApi-CDBq6z23.js";
 import { i as usePlatformContext, n as evaluateCondition, r as useForm, t as useFormBuilder } from "./useFormBuilder-DG3HOFGA.js";
 import { ADMIN_PANEL_PERMISSIONS, ADMIN_ROLE, canAccessAdmin, canAccessByPolicy, canAccessPlugin, getAccessAudience, getRoleInfo, getUserPermissions, hasAllPermissions, hasAnyPermission, isAdminRole, isAdminUser, normalizeAccessPolicy } from "./permissions.js";

package/dist/install.js

@@ -1,7 +1,7 @@
 import "./experiment-utils-CLnzPPq5.js";
 import "./EmptyState-p90quq8Z.js";
 import "./useControlSchema-BMVb2XIQ.js";
-import { t as components_exports } from "./components-CDomhGSj.js";
+import { t as components_exports } from "./components-HXV-ZkBg.js";
 import "./SettingsModal-D7LFUokT.js";
 import "./ExperimentPopover-tLwJ7XF4.js";
 import "./ExperimentSelectorModal-B6P2msT4.js";