@morscherlab/mint-sdk 1.1.8 → 1.1.10

package/dist/__tests__/components/RetiredStyles.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/composables/autoGroup/groupByOrder.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/composables/useSampleGroups.tree.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/components/AppTopBar.vue.d.ts

@@ -20,7 +20,7 @@ interface Props {
     pillNav?: PillNavItemInput[];
     /** Active id for the preferred centered pill navigation. */
     currentPillId?: string;
-    /** Account dropdown entries. Takes precedence over the classic profile button. */
+    /** Account dropdown entries. */
     accountMenu?: AccountMenuItem[];
     /** Show the notifications icon button. */
     showNotifications?: boolean;
@@ -36,17 +36,15 @@ interface Props {
     showStandaloneLabel?: boolean;
     /** Custom standalone badge label. */
     standaloneLabel?: string;
-    /** Show the classic admin shortcut. */
+    /** Show the admin shortcut. */
     showAdmin?: boolean;
-    /** Route used by the classic admin shortcut. */
+    /** Route used by the admin shortcut. */
     adminPath?: string;
-    /** Show the classic profile button when accountMenu is not provided. */
-    showProfile?: boolean;
-    /** Classic profile display name. */
+    /** Account display name. */
     userName?: string;
-    /** Explicit classic profile initial. */
+    /** Explicit account avatar initial. */
     userInitial?: string;
-    /** Classic profile email, used by avatar/account layouts. */
+    /** Account email shown in the avatar menu. */
     userEmail?: string;
 }
 declare function __VLS_template(): {
@@ -81,7 +79,6 @@ declare function __VLS_template(): {
 type __VLS_TemplateResult = ReturnType<typeof __VLS_template>;
 declare const __VLS_component: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {
     "sign-out": () => any;
-    "profile-click": () => any;
     "admin-click": () => any;
     "page-selector-select": (page: PageSelectorItem) => any;
     "pill-select": (item: PillNavItem) => any;
@@ -93,7 +90,6 @@ declare const __VLS_component: import('vue').DefineComponent<Props, {}, {}, {},
     "settings-values-change": (data: Record<string, unknown>) => any;
 }, string, import('vue').PublicProps, Readonly<Props> & Readonly<{
     "onSign-out"?: (() => any) | undefined;
-    "onProfile-click"?: (() => any) | undefined;
     "onAdmin-click"?: (() => any) | undefined;
     "onPage-selector-select"?: ((page: PageSelectorItem) => any) | undefined;
     "onPill-select"?: ((item: PillNavItem) => any) | undefined;
@@ -115,7 +111,6 @@ declare const __VLS_component: import('vue').DefineComponent<Props, {}, {}, {},
     standaloneLabel: string;
     showAdmin: boolean;
     adminPath: string;
-    showProfile: boolean;
 }, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, any>;
 declare const _default: __VLS_WithTemplateSlots<typeof __VLS_component, __VLS_TemplateResult["slots"]>;
 export default _default;

package/dist/components/AutoGroupModal.adapter.d.ts

@@ -1,4 +1,4 @@
-import { AutoGroupResult, ColumnInfo, ColumnRole } from '../types/auto-group';
+import { AutoGroupResult, ClassSchema, ColumnInfo, ColumnRole } from '../types/auto-group';
 import { SampleGroup } from '../types';
 import { FieldRecipeGroup, QcRoute, SmartGroupField } from './SmartGroupFieldRecipe.groups';
 import { ManualSample } from './SmartGroupManual.cohorts';
@@ -8,15 +8,30 @@ export declare function roleLabel(role?: ColumnRole): string;
 /**
  * Columns worth offering as grouping toggles: factors and replicates, plus any
  * column already enabled in `groupBy` (so a manual group-by choice still shows).
- * Preserves the engine's column order.
+ * Preserves the engine's column order. `groupBy` is the schema's ORDERED layer
+ * list — entry N is hierarchy layer N of the composed group names.
  */
-export declare function candidateColumns(columns: ColumnInfo[], enabled: ReadonlySet<number>): ColumnInfo[];
-/** The candidate column indices in display order, so card index → engine column. */
-export declare function candidateColumnIndices(columns: ColumnInfo[], enabled: ReadonlySet<number>): number[];
-/** Map engine columns to Field Recipe cards + their on/off state (same order). */
-export declare function engineFieldsToCards(columns: ColumnInfo[], enabled: ReadonlySet<number>): {
+export declare function candidateColumns(columns: ColumnInfo[], groupBy: readonly number[]): ColumnInfo[];
+/**
+ * Map engine columns to Field Recipe cards + their on/off state (same order).
+ * `layers` aligns with the cards: the column's 1-based position in the
+ * `groupBy` layer order, or `null` when the column is not grouped by.
+ */
+export declare function engineFieldsToCards(columns: ColumnInfo[], groupBy: readonly number[]): {
+    fields: SmartGroupField[];
+    enabled: boolean[];
+    layers: (number | null)[];
+};
+/**
+ * Build the batch-wide field recipe from every class schema. The active schema
+ * stays first for a stable card order; fields and enabled hierarchy layers that
+ * only exist in another token-length/class split are appended instead of being
+ * hidden from the controlled UI.
+ */
+export declare function engineSchemasToCards(schemas: Record<string, ClassSchema>, activeClassKey: string): {
     fields: SmartGroupField[];
     enabled: boolean[];
+    layers: (number | null)[];
 };
 /** Map engine sample groups to the live preview rail shape. */
 export declare function engineGroupsToRail(groups: SampleGroup[]): FieldRecipeGroup[];

package/dist/components/PluginIcon.vue.d.ts

@@ -1,11 +1,11 @@
 interface Props {
     icon?: string;
-    size?: 'sm' | 'md' | 'lg';
+    size?: 'sm' | 'md' | 'topbar' | 'lg';
     variant?: 'solid' | 'tinted';
     tone?: string;
 }
 declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<Props> & Readonly<{}>, {
-    size: "sm" | "md" | "lg";
+    size: "sm" | "md" | "topbar" | "lg";
     variant: "solid" | "tinted";
 }, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLSpanElement>;
 export default _default;

package/dist/components/PluginWorkspaceView.props.d.ts

@@ -39,17 +39,15 @@ export interface PluginWorkspaceViewProps {
     showNotifications?: boolean;
     /** Draw a notification dot on the notifications icon. */
     hasNotificationDot?: boolean;
-    /** Show the classic admin shortcut. */
+    /** Show the admin shortcut. */
     showAdmin?: boolean;
-    /** Route used by the classic admin shortcut. */
+    /** Route used by the admin shortcut. */
     adminPath?: string;
-    /** Show the classic profile button when accountMenu is not provided. */
-    showProfile?: boolean;
-    /** Classic profile display name. */
+    /** Account display name. */
     userName?: string;
-    /** Explicit classic profile initial. */
+    /** Explicit account avatar initial. */
     userInitial?: string;
-    /** Classic profile email. */
+    /** Account email shown in the avatar menu. */
     userEmail?: string;
     /** Enable the built-in AppTopBar experiment popover and selector flow. The current experiment comes from the shared experiment store, not from a prop. Keep this comment on one line — the docs extractor drops multi-line JSDoc. */
     experimentShell?: boolean;

package/dist/components/PluginWorkspaceView.vue.d.ts

@@ -47,7 +47,6 @@ declare const __VLS_component: import('vue').DefineComponent<PluginWorkspaceView
     "update:modelValue": (values: Record<string, unknown>) => any;
     "sign-out": () => any;
     "update:values": (values: Record<string, unknown>) => any;
-    "profile-click": () => any;
     "admin-click": () => any;
     "page-selector-select": (page: PageSelectorItem) => any;
     "pill-select": (item: PillNavItem) => any;
@@ -69,7 +68,6 @@ declare const __VLS_component: import('vue').DefineComponent<PluginWorkspaceView
     "onUpdate:modelValue"?: ((values: Record<string, unknown>) => any) | undefined;
     "onSign-out"?: (() => any) | undefined;
     "onUpdate:values"?: ((values: Record<string, unknown>) => any) | undefined;
-    "onProfile-click"?: (() => any) | undefined;
     "onAdmin-click"?: (() => any) | undefined;
     "onPage-selector-select"?: ((page: PageSelectorItem) => any) | undefined;
     "onPill-select"?: ((item: PillNavItem) => any) | undefined;
@@ -123,7 +121,6 @@ declare const __VLS_component: import('vue').DefineComponent<PluginWorkspaceView
     standaloneLabel: string;
     showAdmin: boolean;
     adminPath: string;
-    showProfile: boolean;
     formEnhancements: import('..').FormEnhancements<Record<string, unknown>>;
     showFormActions: boolean;
     formLoading: boolean;

package/dist/components/SampleSelector.groups.d.ts

@@ -1,15 +1,15 @@
 import { SampleGroup } from '../types';
+export { getSampleGroupMajorPrefix, getSampleGroupParentPath, splitSampleGroupPath, } from '../utils/sampleGroupPath';
 export type GroupDragKind = 'major' | 'sub' | 'flat';
 export type GroupReorderPosition = 'before' | 'after';
 export declare function detectSampleGroupSeparator(groups: SampleGroup[]): string;
-export declare function getSampleGroupMajorPrefix(groupName: string, separator: string): string;
 export declare function moveSampleToGroup(groups: SampleGroup[], sample: string, sourceGroup: string | null, targetGroup: string): SampleGroup[];
-export declare function removeSampleGroup(groups: SampleGroup[], groupName: string): SampleGroup[];
-export declare function removeSampleMajorGroup(groups: SampleGroup[], majorGroup: {
-    subGroups: Array<{
-        name: string;
-    }>;
-}): SampleGroup[];
+/**
+ * Drop every named group. Callers pass the concrete group names beneath the
+ * node being removed, so one helper covers a single group, a whole family, or
+ * any intermediate hierarchy level.
+ */
+export declare function removeSampleGroups(groups: SampleGroup[], groupNames: string[]): SampleGroup[];
 export declare function removeSampleFromGroup(groups: SampleGroup[], sample: string, groupName: string): SampleGroup[];
 export declare function reorderSampleGroup(groups: SampleGroup[], source: string, target: string, position: GroupReorderPosition): SampleGroup[];
 export declare function reorderSampleMajorGroup(groups: SampleGroup[], source: string, target: string, position: GroupReorderPosition): SampleGroup[];

package/dist/components/SampleSelector.selection.d.ts

@@ -1,26 +1,20 @@
 import { ComputedRef } from 'vue';
-import { SampleMajorGroup } from '../composables/useSampleGroups';
-interface SampleGroupSelectionSource {
-    samples: string[];
-}
 export interface UseSampleSelectorSelectionOptions {
     selected: () => string[];
     samples: () => string[];
-    findGroup: (groupName: string) => SampleGroupSelectionSource | undefined;
     emitSelected: (samples: string[]) => void;
 }
 export interface UseSampleSelectorSelectionReturn {
     isAllSelected: ComputedRef<boolean>;
     toggleSelectAll: () => void;
     toggleSample: (sample: string) => void;
-    toggleGroupSamples: (groupName: string) => void;
-    toggleMajorGroupSamples: (majorGroup: SampleMajorGroup) => void;
+    toggleSamplesSelection: (samples: string[]) => void;
     isFullySelected: (samples: string[]) => boolean;
     isPartiallySelected: (samples: string[]) => boolean;
-    isGroupFullySelected: (groupName: string) => boolean;
-    isGroupPartiallySelected: (groupName: string) => boolean;
-    isMajorGroupFullySelected: (majorGroup: SampleMajorGroup) => boolean;
-    isMajorGroupPartiallySelected: (majorGroup: SampleMajorGroup) => boolean;
 }
+/**
+ * Selection state for the sample selector. Works on plain sample arrays rather
+ * than group names, so any level of the group hierarchy can drive it by handing
+ * over the samples beneath that node.
+ */
 export declare function useSampleSelectorSelection(options: UseSampleSelectorSelectionOptions): UseSampleSelectorSelectionReturn;
-export {};

package/dist/components/SampleSelector.tree.d.ts

@@ -0,0 +1,39 @@
+import { SampleGroupNode } from '../composables/useSampleGroups';
+import { GroupDragKind, GroupReorderPosition } from './SampleSelector.groups';
+/**
+ * Handlers and state predicates shared by every level of the group tree.
+ * Passed down as a single prop so the recursive row component does not have to
+ * re-emit each event at every nesting level.
+ */
+export interface SampleGroupTreeContext {
+    isExpanded: (key: string) => boolean;
+    toggleExpanded: (key: string) => void;
+    isSampleSelected: (sample: string) => boolean;
+    isFullySelected: (samples: string[]) => boolean;
+    isPartiallySelected: (samples: string[]) => boolean;
+    toggleSamples: (samples: string[]) => void;
+    toggleSample: (sample: string) => void;
+    removeGroups: (groupNames: string[]) => void;
+    removeSampleFromGroup: (sample: string, groupName: string) => void;
+    openColorPicker: (groupNames: string[], event: Event) => void;
+    draggingSample: () => string | null;
+    dragOverGroup: () => string | null;
+    draggingGroup: () => string | null;
+    draggingGroupKind: () => GroupDragKind | null;
+    reorderTarget: () => string | null;
+    reorderPosition: () => GroupReorderPosition | null;
+    onSampleDragStart: (sample: string, groupName: string | null, event: DragEvent) => void;
+    onSampleDragEnd: () => void;
+    onSampleDragOver: (groupName: string, event: DragEvent) => void;
+    onSampleDragLeave: () => void;
+    onSampleDrop: (groupName: string, event: DragEvent) => void;
+    onGroupDragStart: (name: string, kind: GroupDragKind, event: DragEvent) => void;
+    onGroupDragEnd: () => void;
+    onGroupDragOver: (name: string, kind: GroupDragKind, event: DragEvent) => void;
+    onGroupDragLeave: (event: DragEvent) => void;
+    onGroupDrop: (name: string, kind: GroupDragKind, event: DragEvent) => void;
+}
+/** Every concrete group name beneath a node, in tree order. */
+export declare function collectLeafGroupNames(node: SampleGroupNode): string[];
+/** Expansion keys for a whole tree, used by "expand all". */
+export declare function collectNodeKeys(nodes: SampleGroupNode[]): string[];

package/dist/components/SampleSelectorGroupNode.vue.d.ts

@@ -0,0 +1,9 @@
+import { SampleGroupNode } from '../composables/useSampleGroups';
+import { SampleGroupTreeContext } from './SampleSelector.tree';
+interface Props {
+    node: SampleGroupNode;
+    depth: number;
+    ctx: SampleGroupTreeContext;
+}
+declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<Props> & Readonly<{}>, {}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLDivElement>;
+export default _default;

package/dist/components/SmartGroup.types.d.ts

@@ -39,6 +39,11 @@ export interface SmartGroupFieldRecipeProps {
     qcColor?: string;
     /** Controls the field toggles; when set, clicking a toggle emits `toggle`. */
     enabled?: boolean[];
+    /**
+     * Per-card 1-based hierarchy layer (1 = the sample selector's major group),
+     * `null` for cards not grouped by. When set, reorder clicks emit `move`.
+     */
+    layers?: (number | null)[];
     /** Pre-computed resulting groups; when set, the rail renders these directly. */
     groups?: FieldRecipeGroup[];
     /** QC summary chip to show in the rail; `null` hides it (e.g. when mixed). */

package/dist/components/SmartGroupFieldRecipe.groups.d.ts

@@ -35,9 +35,10 @@ export interface FieldRecipeSummary {
 }
 /**
  * Build the ordered group list from whichever fields are switched on.
- * Returns an empty list when no field is active.
+ * Returns an empty list when no field is active. `layerOrder` (field indices
+ * in layer order) overrides the default field-order joining of the group name.
  */
-export declare function computeFieldGroups(samples: SmartGroupSampleRecord[], fields: SmartGroupField[], on: boolean[], palette: string[]): FieldRecipeGroup[];
+export declare function computeFieldGroups(samples: SmartGroupSampleRecord[], fields: SmartGroupField[], on: boolean[], palette: string[], layerOrder?: readonly number[]): FieldRecipeGroup[];
 /**
  * Append the QC pool group when QC is mixed into the biological groups.
  * `Overlay only` and `Exclude` leave the group list untouched.

package/dist/components/SmartGroupFieldRecipe.vue.d.ts

@@ -4,6 +4,7 @@ declare const _default: import('vue').DefineComponent<SmartGroupFieldRecipeProps
     toggle: (index: number) => any;
     cancel: () => any;
     close: () => any;
+    move: (index: number, direction: "up" | "down") => any;
     manual: () => any;
     apply: (payload: FieldRecipeApplyPayload) => any;
     "update:route": (route: QcRoute) => any;
@@ -14,6 +15,7 @@ declare const _default: import('vue').DefineComponent<SmartGroupFieldRecipeProps
     onToggle?: ((index: number) => any) | undefined;
     onCancel?: (() => any) | undefined;
     onClose?: (() => any) | undefined;
+    onMove?: ((index: number, direction: "up" | "down") => any) | undefined;
     onManual?: (() => any) | undefined;
     onApply?: ((payload: FieldRecipeApplyPayload) => any) | undefined;
     "onUpdate:route"?: ((route: QcRoute) => any) | undefined;

package/dist/components/index.js

@@ -1,7 +1,7 @@
 import { f as BaseModal_default, m as BaseButton_default } from "../experiment-utils-CLnzPPq5.js";
 import { a as BaseSelect_default, i as BasePill_default, n as Skeleton_default, s as BaseInput_default, t as EmptyState_default } from "../EmptyState-p90quq8Z.js";
 import { At as BaseCheckbox_default, Ct as DatePicker_default, Dt as BaseSlider_default, It as BaseTextarea_default, L as GeneratedPathInput_default, M as SequenceInput_default, O as ConcentrationInput_default, Ot as BaseRadioGroup_default, P as FormulaInput_default, at as TagsInput_default, it as NumberInput_default, j as MoleculeInput_default, jt as Tooltip_default, k as UnitInput_default, kt as BaseToggle_default, nt as AlertBox_default, ot as TimePicker_default, rt as FileUploader_default, tt as DateTimePicker_default, wt as MultiSelect_default, z as ArtifactSelectorModal_default } from "../useControlSchema-BMVb2XIQ.js";
-import { $ as SmartGroupFieldRecipe_default, A as ProtocolStepEditor_default, At as AppToastContainer_default, B as Breadcrumb_default, Ct as AppPluginSwitcher_default, Dt as ThemeToggle_default, Et as CollapsibleCard_default, F as RackEditor_default, Ft as BaseTabs_default, G as AppContainer_default, H as ProgressBar_default, I as BioTemplatePresetWorkspaceView_default, It as ColorSlider_default, J as ComponentBindingRenderer_default, K as DoseDesignWorkspaceView_default, L as BioTemplatePackWorkspaceView_default, M as ReagentEditor_default, Mt as Calendar_default, N as SmartGroupModal_default, Nt as DropdownButton_default, O as ChemicalFormula_default, Ot as ActionMenu_default, P as GroupAssigner_default, Pt as SegmentedControl_default, Q as SmartGroupManual_default, R as BioTemplateExperimentWorkspaceView_default, St as AppTopBar_default, Tt as PluginIcon_default, U as StatusIndicator_default, V as Avatar_default, W as Divider_default, X as SampleSelector_default, Y as ScheduleCalendar_default, Z as AutoGroupModal_default, _t as AppLayout_default, a as ResourceCard_default, at as DoseCalculator_default, b as InstrumentAlertLog_default, bt as FormActions_default, c as BatchProgressList_default, ct as GeneratedResultRenderer_default, dt as LoadingSpinner_default, et as ReagentList_default, gt as MobileSupportGate_default, ht as PluginWorkspaceView_default, i as SectionCard_default, it as ExperimentTimeline_default, j as SampleHierarchyTree_default, jt as DataFrame_default, k as ScientificNumber_default, kt as IconButton_default, l as AuditTrail_default, lt as GeneratedPlotlyResult_default, n as FitPanel_default, nt as SampleLegend_default, o as TimeRangeInput_default, ot as GeneratedPluginView_default, q as ControlWorkspaceView_default, r as ArtifactSaveDialog_default, rt as WellPlate_default, s as ExperimentDataViewer_default, st as JobsStatusTray_default, tt as PlateMapEditor_default, u as LcmsSequenceTable_default, ut as ChartContainer_default, v as InstrumentStatusCard_default, vt as AppSidebar_default, wt as AppAvatarMenu_default, x as SequenceProgressBar_default, xt as StepWizard_default, y as InstrumentStateBadge_default, yt as FormBuilder_default, z as BioTemplateRenderer_default } from "../components-CDomhGSj.js";
+import { $ as SmartGroupFieldRecipe_default, A as ProtocolStepEditor_default, At as AppToastContainer_default, B as Breadcrumb_default, Ct as AppPluginSwitcher_default, Dt as ThemeToggle_default, Et as CollapsibleCard_default, F as RackEditor_default, Ft as BaseTabs_default, G as AppContainer_default, H as ProgressBar_default, I as BioTemplatePresetWorkspaceView_default, It as ColorSlider_default, J as ComponentBindingRenderer_default, K as DoseDesignWorkspaceView_default, L as BioTemplatePackWorkspaceView_default, M as ReagentEditor_default, Mt as Calendar_default, N as SmartGroupModal_default, Nt as DropdownButton_default, O as ChemicalFormula_default, Ot as ActionMenu_default, P as GroupAssigner_default, Pt as SegmentedControl_default, Q as SmartGroupManual_default, R as BioTemplateExperimentWorkspaceView_default, St as AppTopBar_default, Tt as PluginIcon_default, U as StatusIndicator_default, V as Avatar_default, W as Divider_default, X as SampleSelector_default, Y as ScheduleCalendar_default, Z as AutoGroupModal_default, _t as AppLayout_default, a as ResourceCard_default, at as DoseCalculator_default, b as InstrumentAlertLog_default, bt as FormActions_default, c as BatchProgressList_default, ct as GeneratedResultRenderer_default, dt as LoadingSpinner_default, et as ReagentList_default, gt as MobileSupportGate_default, ht as PluginWorkspaceView_default, i as SectionCard_default, it as ExperimentTimeline_default, j as SampleHierarchyTree_default, jt as DataFrame_default, k as ScientificNumber_default, kt as IconButton_default, l as AuditTrail_default, lt as GeneratedPlotlyResult_default, n as FitPanel_default, nt as SampleLegend_default, o as TimeRangeInput_default, ot as GeneratedPluginView_default, q as ControlWorkspaceView_default, r as ArtifactSaveDialog_default, rt as WellPlate_default, s as ExperimentDataViewer_default, st as JobsStatusTray_default, tt as PlateMapEditor_default, u as LcmsSequenceTable_default, ut as ChartContainer_default, v as InstrumentStatusCard_default, vt as AppSidebar_default, wt as AppAvatarMenu_default, x as SequenceProgressBar_default, xt as StepWizard_default, y as InstrumentStateBadge_default, yt as FormBuilder_default, z as BioTemplateRenderer_default } from "../components-HXV-ZkBg.js";
 import { s as FormField_default, t as SettingsModal_default } from "../SettingsModal-D7LFUokT.js";
 import { r as ConfirmDialog_default, t as ExperimentPopover_default } from "../ExperimentPopover-tLwJ7XF4.js";
 import { r as ExperimentCodeBadge_default, t as ExperimentSelectorModal_default } from "../ExperimentSelectorModal-B6P2msT4.js";