@morscherlab/mint-sdk 1.0.0-beta.7 → 1.0.0-rc.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +9 -1
- package/dist/__tests__/components/LcmsSequenceTable.test.d.ts +1 -0
- package/dist/__tests__/components/ProgressBar.test.d.ts +1 -0
- package/dist/__tests__/components/RackEditor.test.d.ts +1 -0
- package/dist/__tests__/components/SequenceProgressBar.test.d.ts +1 -0
- package/dist/__tests__/composables/useExperimentSamples.test.d.ts +1 -0
- package/dist/__tests__/composables/useProtocolTemplates.test.d.ts +1 -0
- package/dist/__tests__/stores/settings.test.d.ts +1 -0
- package/dist/__tests__/utils/instrument.test.d.ts +1 -0
- package/dist/__tests__/utils/lcms.test.d.ts +1 -0
- package/dist/__tests__/utils/permissions.test.d.ts +1 -0
- package/dist/__tests__/utils/rack.test.d.ts +1 -0
- package/dist/{auth-QQj2kkze.js → auth-B7g4J4ZF.js} +148 -24
- package/dist/auth-B7g4J4ZF.js.map +1 -0
- package/dist/components/AutoGroupModal.vue.d.ts +1 -1
- package/dist/components/BaseCheckbox.vue.d.ts +1 -1
- package/dist/components/BaseToggle.vue.d.ts +2 -2
- package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts +1 -1
- package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts +1 -1
- package/dist/components/BioTemplatePresetWorkspaceView.vue.d.ts +1 -1
- package/dist/components/DoseDesignWorkspaceView.vue.d.ts +1 -1
- package/dist/components/FormulaInput.vue.d.ts +1 -1
- package/dist/components/InstrumentAlertLog.vue.d.ts +22 -0
- package/dist/components/InstrumentStateBadge.vue.d.ts +11 -0
- package/dist/components/InstrumentStatusCard.vue.d.ts +13 -0
- package/dist/components/LcmsSequenceTable.vue.d.ts +26 -0
- package/dist/components/ProgressBar.vue.d.ts +1 -0
- package/dist/components/RackEditor.vue.d.ts +41 -3
- package/dist/components/ReagentList.vue.d.ts +1 -1
- package/dist/components/SampleSelector.vue.d.ts +5 -2
- package/dist/components/SegmentedControl.vue.d.ts +2 -0
- package/dist/components/SequenceInput.vue.d.ts +1 -1
- package/dist/components/SequenceProgressBar.vue.d.ts +15 -0
- package/dist/components/SettingsModal.vue.d.ts +8 -1
- package/dist/components/TagsInput.vue.d.ts +1 -1
- package/dist/components/WellPlate.vue.d.ts +42 -3
- package/dist/components/index.d.ts +5 -0
- package/dist/components/index.js +3 -3
- package/dist/{components-DihbSJjU.js → components-BhK-dW99.js} +2135 -1075
- package/dist/components-BhK-dW99.js.map +1 -0
- package/dist/composables/experimentDesignData.d.ts +17 -0
- package/dist/composables/index.d.ts +2 -0
- package/dist/composables/index.js +4 -4
- package/dist/composables/useControlSchema.d.ts +11 -0
- package/dist/composables/useExperimentData.d.ts +11 -3
- package/dist/composables/useExperimentSamples.d.ts +42 -0
- package/dist/composables/usePlatformContext.d.ts +54 -0
- package/dist/{composables-BcgZ6diz.js → composables-Bg7CFuNz.js} +5 -3
- package/dist/composables-Bg7CFuNz.js.map +1 -0
- package/dist/index.d.ts +4 -0
- package/dist/index.js +168 -6
- package/dist/index.js.map +1 -0
- package/dist/install.js +2 -2
- package/dist/instrument.d.ts +7 -0
- package/dist/lcms.d.ts +27 -0
- package/dist/permissions.d.ts +46 -0
- package/dist/stores/auth.d.ts +74 -2
- package/dist/stores/index.js +1 -1
- package/dist/styles.css +3186 -1070
- package/dist/templates/builders.d.ts +7 -3
- package/dist/templates/index.d.ts +2 -2
- package/dist/templates/index.js +2 -2
- package/dist/templates/presets.d.ts +12 -0
- package/dist/templates/types.d.ts +16 -1
- package/dist/{templates-Cyt0Suwf.js → templates-BorLR_7p.js} +324 -10
- package/dist/templates-BorLR_7p.js.map +1 -0
- package/dist/types/auth.d.ts +2 -0
- package/dist/types/components.d.ts +32 -3
- package/dist/types/form-builder.d.ts +2 -1
- package/dist/types/index.d.ts +4 -1
- package/dist/types/instrument.d.ts +56 -0
- package/dist/types/platform.d.ts +3 -0
- package/dist/{useExperimentData-CM6Y0u5L.js → useProtocolTemplates-n6AJqSqv.js} +627 -380
- package/dist/useProtocolTemplates-n6AJqSqv.js.map +1 -0
- package/dist/utils/rack.d.ts +47 -0
- package/package.json +1 -1
- package/src/__tests__/components/AppTopBar.test.ts +15 -0
- package/src/__tests__/components/BaseTabs.test.ts +15 -0
- package/src/__tests__/components/GroupAssigner.test.ts +18 -0
- package/src/__tests__/components/LcmsSequenceTable.test.ts +57 -0
- package/src/__tests__/components/ProgressBar.test.ts +18 -0
- package/src/__tests__/components/RackEditor.test.ts +125 -0
- package/src/__tests__/components/SampleSelector.test.ts +25 -0
- package/src/__tests__/components/SegmentedControl.test.ts +45 -0
- package/src/__tests__/components/SequenceProgressBar.test.ts +39 -0
- package/src/__tests__/components/SettingsModal.test.ts +83 -2
- package/src/__tests__/composables/useApi.test.ts +45 -0
- package/src/__tests__/composables/useAuth.test.ts +20 -0
- package/src/__tests__/composables/useControlSchema.test.ts +4 -0
- package/src/__tests__/composables/useExperimentData.test.ts +23 -0
- package/src/__tests__/composables/useExperimentSamples.test.ts +91 -0
- package/src/__tests__/composables/useProtocolTemplates.test.ts +64 -0
- package/src/__tests__/stores/settings.test.ts +78 -0
- package/src/__tests__/templates/templates.test.ts +86 -0
- package/src/__tests__/utils/instrument.test.ts +47 -0
- package/src/__tests__/utils/lcms.test.ts +73 -0
- package/src/__tests__/utils/permissions.test.ts +50 -0
- package/src/__tests__/utils/rack.test.ts +120 -0
- package/src/components/AppAvatarMenu.vue +6 -3
- package/src/components/AppTopBar.vue +16 -10
- package/src/components/AuditTrail.vue +1 -1
- package/src/components/BaseTabs.vue +22 -1
- package/src/components/Calendar.vue +6 -2
- package/src/components/ConcentrationInput.vue +3 -2
- package/src/components/GroupAssigner.vue +8 -3
- package/src/components/InstrumentAlertLog.vue +191 -0
- package/src/components/InstrumentStateBadge.vue +50 -0
- package/src/components/InstrumentStatusCard.vue +188 -0
- package/src/components/LcmsSequenceTable.vue +191 -0
- package/src/components/NumberInput.vue +5 -3
- package/src/components/ProgressBar.vue +3 -0
- package/src/components/RackEditor.vue +73 -2
- package/src/components/SampleHierarchyTree.vue +3 -2
- package/src/components/SampleSelector.vue +28 -9
- package/src/components/SegmentedControl.story.vue +17 -0
- package/src/components/SegmentedControl.vue +14 -3
- package/src/components/SequenceProgressBar.vue +71 -0
- package/src/components/SettingsModal.vue +49 -2
- package/src/components/UnitInput.vue +6 -2
- package/src/components/WellPlate.vue +145 -24
- package/src/components/index.ts +5 -0
- package/src/components/internal/WellEditPopupInternal.vue +1 -0
- package/src/composables/experimentDesignData.ts +182 -0
- package/src/composables/index.ts +14 -0
- package/src/composables/useApi.ts +113 -16
- package/src/composables/useAuth.ts +4 -0
- package/src/composables/useAutoGroup.ts +18 -9
- package/src/composables/useControlSchema.ts +21 -0
- package/src/composables/useExperimentData.ts +57 -16
- package/src/composables/useExperimentSamples.ts +142 -0
- package/src/composables/useProtocolTemplates.ts +13 -1
- package/src/composables/useRackEditor.ts +3 -2
- package/src/index.ts +27 -0
- package/src/instrument.ts +90 -0
- package/src/lcms.ts +108 -0
- package/src/permissions.ts +143 -0
- package/src/stores/auth.ts +79 -26
- package/src/stores/settings.ts +10 -0
- package/src/styles/components/instrument-monitor.css +478 -0
- package/src/styles/components/lcms-sequence-table.css +189 -0
- package/src/styles/components/sequence-progress-bar.css +63 -0
- package/src/styles/components/settings-modal.css +9 -0
- package/src/styles/components/tabs.css +9 -0
- package/src/styles/components/well-edit-popup.css +7 -1
- package/src/styles/components/well-plate.css +5 -0
- package/src/styles/index.css +3 -0
- package/src/templates/builders.ts +201 -0
- package/src/templates/controlSchemas.ts +68 -0
- package/src/templates/index.ts +2 -0
- package/src/templates/presets.ts +23 -0
- package/src/templates/types.ts +17 -0
- package/src/types/auth.ts +3 -0
- package/src/types/components.ts +45 -3
- package/src/types/form-builder.ts +2 -1
- package/src/types/index.ts +35 -0
- package/src/types/instrument.ts +61 -0
- package/src/types/platform.ts +4 -0
- package/src/utils/rack.ts +209 -0
- package/dist/auth-QQj2kkze.js.map +0 -1
- package/dist/components-DihbSJjU.js.map +0 -1
- package/dist/composables-BcgZ6diz.js.map +0 -1
- package/dist/templates-Cyt0Suwf.js.map +0 -1
- package/dist/useExperimentData-CM6Y0u5L.js.map +0 -1
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import { AssayMatrixTemplate, AssayMatrixTemplateData, BioTemplateEnvelope, CalibrationCurveTemplate, CalibrationCurveTemplateData, CreateBioTemplatePackCollectionOptions, CreateElisaAssayCollectionOptions, CreateLcmsBatchCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseResponseTemplate, DoseResponseTemplateData, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, InstrumentRunTemplate, InstrumentRunTemplateData, PlateMapTemplate, PlateMapTemplateData, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrPlateTemplate, QpcrPlateTemplateData, ReagentListTemplate, ReagentListTemplateData, TimeCourseTemplate, TimeCourseTemplateData, SampleSheetTemplate, SampleSheetTemplateData, SamplePrepTemplate, SamplePrepTemplateData, TemplateCollection, TemplateCollectionEnvelope, TemplateId, TemplatePackId, TemplatePresetId } from './types';
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import { AssayMatrixTemplate, AssayMatrixTemplateData, BioTemplateEnvelope, CalibrationCurveTemplate, CalibrationCurveTemplateData, CreateBioTemplatePackCollectionOptions, CreateElisaAssayCollectionOptions, CreateLcmsBatchCollectionOptions, CreateTargetedMetabolomicsCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseResponseTemplate, DoseResponseTemplateData, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, InstrumentRunTemplate, InstrumentRunTemplateData, PlateMapTemplate, PlateMapTemplateData, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrPlateTemplate, QpcrPlateTemplateData, ReagentListTemplate, ReagentListTemplateData, TimeCourseTemplate, TimeCourseTemplateData, SampleSheetTemplate, SampleSheetTemplateData, SamplePrepTemplate, SamplePrepTemplateData, TemplateCollection, TemplateCollectionEnvelope, TemplateId, TemplatePackId, TemplatePresetId } from './types';
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export declare const TEMPLATE_COLLECTION_KEY = "templates";
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export declare function createTemplateEnvelope<TData>(templateId: TemplateId, data: TData, metadata?: Record<string, unknown>, templateVersion?: string): BioTemplateEnvelope<TData>;
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export declare function createPlateMapTemplate(options?: CreatePlateMapTemplateOptions): PlateMapTemplate;
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@@ -18,27 +18,31 @@ export declare function createBioTemplatePackCollection(name: TemplatePackId | s
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export declare function createWellPlateScreenCollection(options?: CreateWellPlateScreenCollectionOptions): TemplateCollectionEnvelope;
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export declare function createQpcrExpressionCollection(options?: CreateQpcrExpressionCollectionOptions): TemplateCollectionEnvelope;
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export declare function createLcmsBatchCollection(options?: CreateLcmsBatchCollectionOptions): TemplateCollectionEnvelope;
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export declare function createTargetedMetabolomicsCollection(options?: CreateTargetedMetabolomicsCollectionOptions): TemplateCollectionEnvelope;
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export declare function createElisaAssayCollection(options?: CreateElisaAssayCollectionOptions): TemplateCollectionEnvelope;
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export declare function createFlowCytometryAssayCollection(options?: CreateFlowCytometryAssayCollectionOptions): TemplateCollectionEnvelope;
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export declare function createWesternBlotAssayCollection(options?: CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollection(name: 'wellplate-screen', options?: CreateWellPlateScreenCollectionOptions): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollection(name: 'qpcr-expression', options?: CreateQpcrExpressionCollectionOptions): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollection(name: 'lcms-batch', options?: CreateLcmsBatchCollectionOptions): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollection(name: 'targeted-metabolomics', options?: CreateTargetedMetabolomicsCollectionOptions): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollection(name: 'elisa-assay', options?: CreateElisaAssayCollectionOptions): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollection(name: 'flow-cytometry-assay', options?: CreateFlowCytometryAssayCollectionOptions): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollection(name: 'western-blot-assay', options?: CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollection(name: string, options?: CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollection(name: string, options?: CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateTargetedMetabolomicsCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions): TemplateCollectionEnvelope;
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export type BioTemplateControlValues = Record<string, unknown>;
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export declare function bioTemplatePresetControlValuesToOptions(name: 'wellplate-screen', values: BioTemplateControlValues): CreateWellPlateScreenCollectionOptions;
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export declare function bioTemplatePresetControlValuesToOptions(name: 'qpcr-expression', values: BioTemplateControlValues): CreateQpcrExpressionCollectionOptions;
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export declare function bioTemplatePresetControlValuesToOptions(name: 'lcms-batch', values: BioTemplateControlValues): CreateLcmsBatchCollectionOptions;
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export declare function bioTemplatePresetControlValuesToOptions(name: 'targeted-metabolomics', values: BioTemplateControlValues): CreateTargetedMetabolomicsCollectionOptions;
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export declare function bioTemplatePresetControlValuesToOptions(name: 'elisa-assay', values: BioTemplateControlValues): CreateElisaAssayCollectionOptions;
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export declare function bioTemplatePresetControlValuesToOptions(name: 'flow-cytometry-assay', values: BioTemplateControlValues): CreateFlowCytometryAssayCollectionOptions;
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export declare function bioTemplatePresetControlValuesToOptions(name: 'western-blot-assay', values: BioTemplateControlValues): CreateWesternBlotAssayCollectionOptions;
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export declare function bioTemplatePresetControlValuesToOptions(name: TemplatePresetId | string, values: BioTemplateControlValues): CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions;
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export declare function bioTemplatePresetControlValuesToOptions(name: TemplatePresetId | string, values: BioTemplateControlValues): CreateWellPlateScreenCollectionOptions | CreateQpcrExpressionCollectionOptions | CreateLcmsBatchCollectionOptions | CreateTargetedMetabolomicsCollectionOptions | CreateElisaAssayCollectionOptions | CreateFlowCytometryAssayCollectionOptions | CreateWesternBlotAssayCollectionOptions;
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export declare function createBioTemplatePresetCollectionFromControls(name: 'wellplate-screen', values: BioTemplateControlValues): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollectionFromControls(name: 'qpcr-expression', values: BioTemplateControlValues): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollectionFromControls(name: 'lcms-batch', values: BioTemplateControlValues): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollectionFromControls(name: 'targeted-metabolomics', values: BioTemplateControlValues): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollectionFromControls(name: 'elisa-assay', values: BioTemplateControlValues): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollectionFromControls(name: 'flow-cytometry-assay', values: BioTemplateControlValues): TemplateCollectionEnvelope;
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export declare function createBioTemplatePresetCollectionFromControls(name: 'western-blot-assay', values: BioTemplateControlValues): TemplateCollectionEnvelope;
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export { assertTemplateEnvelope, bioTemplatePresetControlValuesToOptions, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createAssayMatrixTemplate, createCalibrationCurveTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createWesternBlotAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSampleSheetTemplate, createSamplePrepTemplate, createTemplateCollection, createDefaultBioTemplate, createTimeCourseTemplate, createTemplateEnvelope, createWellPlateScreenCollection, ensureTemplateFromCollection, ensureTemplateEnvelope, extractTemplateCollection, getTemplateData, TEMPLATE_COLLECTION_KEY, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSampleSheetData, validateSamplePrepData, validateTimeCourseData, } from './builders';
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export { assertTemplateEnvelope, bioTemplatePresetControlValuesToOptions, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createAssayMatrixTemplate, createCalibrationCurveTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createWesternBlotAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSampleSheetTemplate, createSamplePrepTemplate, createTargetedMetabolomicsCollection, createTemplateCollection, createDefaultBioTemplate, createTimeCourseTemplate, createTemplateEnvelope, createWellPlateScreenCollection, ensureTemplateFromCollection, ensureTemplateEnvelope, extractTemplateCollection, getTemplateData, TEMPLATE_COLLECTION_KEY, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSampleSheetData, validateSamplePrepData, validateTimeCourseData, } from './builders';
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export type { BioTemplateControlValues, } from './builders';
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export { bioTemplateCatalog, getBioTemplateInfo, listBioTemplateCatalog, searchBioTemplateCatalog, } from './catalog';
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export { bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, createBioTemplateControlToolkit, getBioTemplateControlDefaults, getBioTemplateControlSchema, listBioTemplateControlSchemas, listBioTemplatePresetControlSchemas, requireBioTemplateControlSchema, } from './controlSchemas';
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export { bioTemplatePresets, getBioTemplatePresetInfo, listBioTemplatePresets, searchBioTemplatePresets, } from './presets';
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export { bioTemplatePacks, getBioTemplatePackInfo, listBioTemplatePacks, searchBioTemplatePacks, } from './packs';
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export { toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, } from './adapters';
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export type { AssayFeature, AssayFeatureType, AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixSampleOptionsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData, AssayMeasurement, AssaySample, BioTemplateEnvelope, CalibrationAcceptance, CalibrationAcceptanceInput, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData, CalibrationModel, CalibrationPoint, CalibrationPointInput, CalibrationPointRole, CalibrationPointStatus, CompoundDoseSeries, ControlDefinition, ControlRole, CreateBioTemplatePackCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreateLcmsBatchCollectionOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData, FlowControlKind, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowMarkerPurpose, FlowPanelColumnsAdapterResult, FlowPanelControl, FlowPanelDataFrameAdapterResult, FlowPanelMarker, FlowPanelRowsAdapterResult, InstrumentMethod, InstrumentMethodInput, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunItem, InstrumentRunItemInput, InstrumentRunItemKind, InstrumentRunRowsAdapterResult, InstrumentRunScheduleEventsAdapterResult, InstrumentRunStepsAdapterResult, InstrumentRunStatus, InstrumentRunTemplate, InstrumentRunTemplateData, DataFrameAdapterResult, DataFrameTemplate, PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepRecord, ProtocolStepsAdapterResult, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrChemistry, QpcrColumnsAdapterResult, QpcrControlKind, QpcrDataFrameAdapterResult, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrReaction, QpcrRowsAdapterResult, QpcrSample, QpcrTarget, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentKind, ReagentListItemsAdapterResult, ReagentListTemplate, ReagentListTemplateData, ReagentRecord, ReagentTemplateInput, ReagentRowsAdapterResult, SampleColumn, SampleColumnType, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleGroupDefinition, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SamplePrepStatus, SamplePrepStep, SamplePrepStepInput, SamplePrepStepType, SamplePrepTemplate, SamplePrepTemplateData, SampleRecord, SampleRowsAdapterResult, SampleSheetTemplate, SampleSheetTemplateData, TimeCourseColumnsAdapterResult, TimeCourseCondition, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseSample, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData, TimePoint, TimeUnit, TemplateId, TemplatePackId, TemplatePresetId, TemplateCollection, TemplateCollectionEnvelope, TemplateDataFrameAdapterResult, TemplateKind, TemplatePlateMap, TemplateSample, TemplateWell, WellMapAdapterResult, } from './types';
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export type { AssayFeature, AssayFeatureType, AssayMatrixColumnsAdapterResult, AssayMatrixDataFrameAdapterResult, AssayMatrixRowsAdapterResult, AssayMatrixSampleOptionsAdapterResult, AssayMatrixTemplate, AssayMatrixTemplateData, AssayMeasurement, AssaySample, BioTemplateEnvelope, CalibrationAcceptance, CalibrationAcceptanceInput, CalibrationCurveColumnsAdapterResult, CalibrationCurveDataFrameAdapterResult, CalibrationCurveRowsAdapterResult, CalibrationCurveTemplate, CalibrationCurveTemplateData, CalibrationModel, CalibrationPoint, CalibrationPointInput, CalibrationPointRole, CalibrationPointStatus, CompoundDoseSeries, ControlDefinition, ControlRole, CreateBioTemplatePackCollectionOptions, CreateAssayMatrixTemplateOptions, CreateCalibrationCurveTemplateOptions, CreateDoseResponseTemplateOptions, CreateElisaAssayCollectionOptions, CreateFlowCytometryAssayCollectionOptions, CreateWesternBlotAssayCollectionOptions, CreateFlowCytometryPanelTemplateOptions, CreateInstrumentRunTemplateOptions, CreateLcmsBatchCollectionOptions, CreateTargetedMetabolomicsCollectionOptions, CreatePlateMapTemplateOptions, CreateProtocolStepsTemplateOptions, CreateQpcrExpressionCollectionOptions, CreateQpcrPlateTemplateOptions, CreateReagentListTemplateOptions, CreateSampleSheetTemplateOptions, CreateSamplePrepTemplateOptions, CreateTimeCourseTemplateOptions, CreateWellPlateScreenCollectionOptions, DoseConditionsAdapterResult, DoseResponseTemplate, DoseResponseTemplateData, FlowControlKind, FlowCytometryPanelTemplate, FlowCytometryPanelTemplateData, FlowMarkerPurpose, FlowPanelColumnsAdapterResult, FlowPanelControl, FlowPanelDataFrameAdapterResult, FlowPanelMarker, FlowPanelRowsAdapterResult, InstrumentMethod, InstrumentMethodInput, InstrumentRunColumnsAdapterResult, InstrumentRunDataFrameAdapterResult, InstrumentRunItem, InstrumentRunItemInput, InstrumentRunItemKind, InstrumentRunRowsAdapterResult, InstrumentRunScheduleEventsAdapterResult, InstrumentRunStepsAdapterResult, InstrumentRunStatus, InstrumentRunTemplate, InstrumentRunTemplateData, DataFrameAdapterResult, DataFrameTemplate, PlateMapEditorAdapterResult, PlateMapTemplate, PlateMapTemplateData, ProtocolColumnsAdapterResult, ProtocolDataFrameAdapterResult, ProtocolRowsAdapterResult, ProtocolStepRecord, ProtocolStepsAdapterResult, ProtocolStepsTemplate, ProtocolStepsTemplateData, QpcrChemistry, QpcrColumnsAdapterResult, QpcrControlKind, QpcrDataFrameAdapterResult, QpcrPlateTemplate, QpcrPlateTemplateData, QpcrReaction, QpcrRowsAdapterResult, QpcrSample, QpcrTarget, QpcrWellMapAdapterResult, ReagentColumnsAdapterResult, ReagentDataFrameAdapterResult, ReagentKind, ReagentListItemsAdapterResult, ReagentListTemplate, ReagentListTemplateData, ReagentRecord, ReagentTemplateInput, ReagentRowsAdapterResult, SampleColumn, SampleColumnType, SampleColumnsAdapterResult, SampleDataFrameAdapterResult, SampleGroupDefinition, SampleOptionsAdapterResult, SamplePrepColumnsAdapterResult, SamplePrepDataFrameAdapterResult, SamplePrepRowsAdapterResult, SamplePrepStatus, SamplePrepStep, SamplePrepStepInput, SamplePrepStepType, SamplePrepTemplate, SamplePrepTemplateData, SampleRecord, SampleRowsAdapterResult, SampleSheetTemplate, SampleSheetTemplateData, TimeCourseColumnsAdapterResult, TimeCourseCondition, TimeCourseDataFrameAdapterResult, TimeCourseRowsAdapterResult, TimeCourseSample, TimeCourseStepsAdapterResult, TimeCourseTemplate, TimeCourseTemplateData, TimePoint, TimeUnit, TemplateId, TemplatePackId, TemplatePresetId, TemplateCollection, TemplateCollectionEnvelope, TemplateDataFrameAdapterResult, TemplateKind, TemplatePlateMap, TemplateSample, TemplateWell, WellMapAdapterResult, } from './types';
|
|
11
11
|
export type { BioTemplateCatalogEntry, } from './catalog';
|
|
12
12
|
export type { BioTemplateComponentBinding, BioTemplateComponentImport, BioTemplateComponentPropsBinding, BioTemplateResolvedComponentBinding, BioTemplateComponentSnippet, BioTemplateComponentSnippetOptions, BioTemplateComponentTarget, BioTemplateComponentUsage, BioTemplateComponentUsageOptions, } from './componentBindings';
|
|
13
13
|
export type { BioTemplateControlSchema, BioTemplateControlTarget, } from './controlSchemas';
|
package/dist/templates/index.js
CHANGED
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
import { $ as toSampleOptions, $t as
|
|
2
|
-
export { TEMPLATE_COLLECTION_KEY, assertTemplateEnvelope, bioTemplateCatalog, bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, bioTemplatePacks, bioTemplatePresetControlValuesToOptions, bioTemplatePresets, createAssayMatrixTemplate, createBioTemplateControlToolkit, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createCalibrationCurveTemplate, createDefaultBioTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSamplePrepTemplate, createSampleSheetTemplate, createTemplateCollection, createTemplateEnvelope, createTimeCourseTemplate, createWellPlateScreenCollection, createWesternBlotAssayCollection, ensureTemplateEnvelope, ensureTemplateFromCollection, extractTemplateCollection, getBioTemplateComponentBindings, getBioTemplateComponentProps, getBioTemplateControlDefaults, getBioTemplateControlSchema, getBioTemplateInfo, getBioTemplatePackInfo, getBioTemplatePresetInfo, getTemplateData, listBioTemplateCatalog, listBioTemplateComponentBindings, listBioTemplateControlSchemas, listBioTemplatePacks, listBioTemplatePresetControlSchemas, listBioTemplatePresets, requireBioTemplateControlSchema, searchBioTemplateCatalog, searchBioTemplatePacks, searchBioTemplatePresets, toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toBioTemplateComponentBindings, toBioTemplateComponentBindingsById, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSamplePrepData, validateSampleSheetData, validateTimeCourseData };
|
|
1
|
+
import { $ as toSampleOptions, $t as validateSampleSheetData, A as toFlowPanelColumns, At as createReagentListTemplate, B as toProtocolDataFrame, Bt as ensureTemplateFromCollection, C as toAssayMatrixRows, Ct as createFlowCytometryPanelTemplate, D as toCalibrationCurveRows, Dt as createProtocolStepsTemplate, E as toCalibrationCurveDataFrame, Et as createPlateMapTemplate, F as toInstrumentRunRows, Ft as createTemplateEnvelope, G as toQpcrRows, Gt as validateDoseResponseData, H as toProtocolSteps, Ht as getTemplateData, I as toInstrumentRunScheduleEvents, It as createTimeCourseTemplate, J as toReagentDataFrame, Jt as validatePlateMapData, K as toQpcrWellPlateWells, Kt as validateFlowCytometryPanelData, L as toInstrumentRunSteps, Lt as createWellPlateScreenCollection, M as toFlowPanelRows, Mt as createSampleSheetTemplate, N as toInstrumentRunColumns, Nt as createTargetedMetabolomicsCollection, O as toDoseConditions, Ot as createQpcrExpressionCollection, P as toInstrumentRunDataFrame, Pt as createTemplateCollection, Q as toSampleDataFrame, Qt as validateSamplePrepData, R as toPlateMapEditorState, Rt as createWesternBlotAssayCollection, S as toAssayMatrixDataFrame, St as createFlowCytometryAssayCollection, T as toCalibrationCurveColumns, Tt as createLcmsBatchCollection, U as toQpcrColumns, Ut as validateAssayMatrixData, V as toProtocolRows, Vt as extractTemplateCollection, W as toQpcrDataFrame, Wt as validateCalibrationCurveData, X as toReagentRows, Xt as validateQpcrPlateData, Y as toReagentListItems, Yt as validateProtocolStepsData, Z as toSampleColumns, Zt as validateReagentListData, _ as toBioTemplateComponentPropsByComponent, _t as createBioTemplatePresetCollectionFromControls, a as getBioTemplateControlDefaults, an as bioTemplatePacks, at as toTimeCourseColumns, b as toBioTemplateComponentUsage, bt as createDoseResponseTemplate, c as listBioTemplatePresetControlSchemas, cn as searchBioTemplatePacks, ct as toTimeCourseSteps, d as getBioTemplateComponentProps, dn as listBioTemplateCatalog, dt as TEMPLATE_COLLECTION_KEY, en as validateTimeCourseData, et as toSamplePrepColumns, f as listBioTemplateComponentBindings, fn as searchBioTemplateCatalog, ft as assertTemplateEnvelope, g as toBioTemplateComponentProps, gt as createBioTemplatePresetCollection, h as toBioTemplateComponentImports, ht as createBioTemplatePackCollection, i as createBioTemplateControlToolkit, in as searchBioTemplatePresets, it as toTemplateDataFrame, j as toFlowPanelDataFrame, jt as createSamplePrepTemplate, k as toDoseLayoutState, kt as createQpcrPlateTemplate, l as requireBioTemplateControlSchema, ln as bioTemplateCatalog, lt as toWellMapArray, m as toBioTemplateComponentBindingsById, mt as createAssayMatrixTemplate, n as bioTemplateControlsToSectionFormSchemas, nn as getBioTemplatePresetInfo, nt as toSamplePrepRows, o as getBioTemplateControlSchema, on as getBioTemplatePackInfo, ot as toTimeCourseDataFrame, p as toBioTemplateComponentBindings, pt as bioTemplatePresetControlValuesToOptions, q as toReagentColumns, qt as validateInstrumentRunData, r as bioTemplateControlsToSidebarPanels, rn as listBioTemplatePresets, rt as toSampleRows, s as listBioTemplateControlSchemas, sn as listBioTemplatePacks, st as toTimeCourseRows, t as bioTemplateControlsToFormSchema, tn as bioTemplatePresets, tt as toSamplePrepDataFrame, u as getBioTemplateComponentBindings, un as getBioTemplateInfo, ut as toWellPlateWells, v as toBioTemplateComponentPropsById, vt as createCalibrationCurveTemplate, w as toAssayMatrixSampleOptions, wt as createInstrumentRunTemplate, x as toAssayMatrixColumns, xt as createElisaAssayCollection, y as toBioTemplateComponentSnippets, yt as createDefaultBioTemplate, z as toProtocolColumns, zt as ensureTemplateEnvelope } from "../templates-BorLR_7p.js";
|
|
2
|
+
export { TEMPLATE_COLLECTION_KEY, assertTemplateEnvelope, bioTemplateCatalog, bioTemplateControlsToFormSchema, bioTemplateControlsToSectionFormSchemas, bioTemplateControlsToSidebarPanels, bioTemplatePacks, bioTemplatePresetControlValuesToOptions, bioTemplatePresets, createAssayMatrixTemplate, createBioTemplateControlToolkit, createBioTemplatePackCollection, createBioTemplatePresetCollection, createBioTemplatePresetCollectionFromControls, createCalibrationCurveTemplate, createDefaultBioTemplate, createDoseResponseTemplate, createElisaAssayCollection, createFlowCytometryAssayCollection, createFlowCytometryPanelTemplate, createInstrumentRunTemplate, createLcmsBatchCollection, createPlateMapTemplate, createProtocolStepsTemplate, createQpcrExpressionCollection, createQpcrPlateTemplate, createReagentListTemplate, createSamplePrepTemplate, createSampleSheetTemplate, createTargetedMetabolomicsCollection, createTemplateCollection, createTemplateEnvelope, createTimeCourseTemplate, createWellPlateScreenCollection, createWesternBlotAssayCollection, ensureTemplateEnvelope, ensureTemplateFromCollection, extractTemplateCollection, getBioTemplateComponentBindings, getBioTemplateComponentProps, getBioTemplateControlDefaults, getBioTemplateControlSchema, getBioTemplateInfo, getBioTemplatePackInfo, getBioTemplatePresetInfo, getTemplateData, listBioTemplateCatalog, listBioTemplateComponentBindings, listBioTemplateControlSchemas, listBioTemplatePacks, listBioTemplatePresetControlSchemas, listBioTemplatePresets, requireBioTemplateControlSchema, searchBioTemplateCatalog, searchBioTemplatePacks, searchBioTemplatePresets, toAssayMatrixColumns, toAssayMatrixDataFrame, toAssayMatrixRows, toAssayMatrixSampleOptions, toBioTemplateComponentBindings, toBioTemplateComponentBindingsById, toBioTemplateComponentImports, toBioTemplateComponentProps, toBioTemplateComponentPropsByComponent, toBioTemplateComponentPropsById, toBioTemplateComponentSnippets, toBioTemplateComponentUsage, toCalibrationCurveColumns, toCalibrationCurveDataFrame, toCalibrationCurveRows, toDoseConditions, toDoseLayoutState, toFlowPanelColumns, toFlowPanelDataFrame, toFlowPanelRows, toInstrumentRunColumns, toInstrumentRunDataFrame, toInstrumentRunRows, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toPlateMapEditorState, toProtocolColumns, toProtocolDataFrame, toProtocolRows, toProtocolSteps, toQpcrColumns, toQpcrDataFrame, toQpcrRows, toQpcrWellPlateWells, toReagentColumns, toReagentDataFrame, toReagentListItems, toReagentRows, toSampleColumns, toSampleDataFrame, toSampleOptions, toSamplePrepColumns, toSamplePrepDataFrame, toSamplePrepRows, toSampleRows, toTemplateDataFrame, toTimeCourseColumns, toTimeCourseDataFrame, toTimeCourseRows, toTimeCourseSteps, toWellMapArray, toWellPlateWells, validateAssayMatrixData, validateCalibrationCurveData, validateDoseResponseData, validateFlowCytometryPanelData, validateInstrumentRunData, validatePlateMapData, validateProtocolStepsData, validateQpcrPlateData, validateReagentListData, validateSamplePrepData, validateSampleSheetData, validateTimeCourseData };
|
|
@@ -48,6 +48,18 @@ export declare const bioTemplatePresets: readonly [{
|
|
|
48
48
|
readonly frontend_import: "import { createLcmsBatchCollection, toAssayMatrixSampleOptions, toInstrumentRunDataFrame, toInstrumentRunScheduleEvents, toInstrumentRunSteps, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
|
|
49
49
|
readonly frontend_adapters: readonly ["toTemplateDataFrame", "toInstrumentRunDataFrame", "toInstrumentRunSteps", "toInstrumentRunScheduleEvents", "toAssayMatrixDataFrame", "toAssayMatrixSampleOptions"];
|
|
50
50
|
readonly components: readonly ["DataFrame", "ExperimentTimeline", "ScheduleCalendar", "ChartContainer", "SampleSelector"];
|
|
51
|
+
}, {
|
|
52
|
+
readonly name: "targeted-metabolomics";
|
|
53
|
+
readonly label: "Targeted metabolomics";
|
|
54
|
+
readonly category: "bio-template-preset";
|
|
55
|
+
readonly purpose: "Sample metadata, extraction prep, internal standards, LC/GC-MS sequence, calibration curve, and metabolite readout matrix for quantitative metabolomics.";
|
|
56
|
+
readonly templates: readonly ["sample-sheet", "sample-prep", "reagent-list", "instrument-run", "calibration-curve", "assay-matrix"];
|
|
57
|
+
readonly aliases: readonly ["targeted metabolomics", "quantitative metabolomics", "lc-ms metabolomics", "gc-ms metabolomics", "targeted lcms", "metabolite quantitation", "mass spec quantitation", "internal standards", "peak area ratio"];
|
|
58
|
+
readonly python_import: "from mint_sdk.templates import create_targeted_metabolomics_collection, save_template_collection";
|
|
59
|
+
readonly python_example: "create_targeted_metabolomics_collection(samples=[\"S001\", \"S002\"], metabolites=[\"Glucose\", \"Lactate\"], internal_standards=[\"13C Glucose\"], instrument=\"LC-MS\")";
|
|
60
|
+
readonly frontend_import: "import { createTargetedMetabolomicsCollection, toInstrumentRunDataFrame, toCalibrationCurveDataFrame, toAssayMatrixDataFrame, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'";
|
|
61
|
+
readonly frontend_adapters: readonly ["toTemplateDataFrame", "toSamplePrepDataFrame", "toReagentDataFrame", "toInstrumentRunDataFrame", "toInstrumentRunSteps", "toInstrumentRunScheduleEvents", "toCalibrationCurveDataFrame", "toAssayMatrixDataFrame", "toAssayMatrixSampleOptions"];
|
|
62
|
+
readonly components: readonly ["DataFrame", "ReagentList", "ExperimentTimeline", "ScheduleCalendar", "FitPanel", "ChartContainer", "SampleSelector"];
|
|
51
63
|
}, {
|
|
52
64
|
readonly name: "elisa-assay";
|
|
53
65
|
readonly label: "ELISA assay";
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import { DataFrameColumn, PlateCondition, PlateMap, PlateMapEditorState, ProtocolStep, Reagent, ScheduleEvent, SampleType, SelectOption, Well, WellPlateFormat } from '../types';
|
|
2
2
|
export type TemplateKind = 'experiment-design';
|
|
3
3
|
export type TemplateId = 'plate-map' | 'sample-sheet' | 'sample-prep' | 'dose-response' | 'calibration-curve' | 'time-course' | 'protocol-steps' | 'assay-matrix' | 'reagent-list' | 'flow-cytometry-panel' | 'instrument-run' | 'qpcr-plate';
|
|
4
|
-
export type TemplatePresetId = 'wellplate-screen' | 'qpcr-expression' | 'lcms-batch' | 'elisa-assay' | 'flow-cytometry-assay' | 'western-blot-assay';
|
|
4
|
+
export type TemplatePresetId = 'wellplate-screen' | 'qpcr-expression' | 'lcms-batch' | 'targeted-metabolomics' | 'elisa-assay' | 'flow-cytometry-assay' | 'western-blot-assay';
|
|
5
5
|
export type TemplatePackId = 'cell-culture-screen' | 'omics-assay' | 'longitudinal-study' | 'molecular-assay';
|
|
6
6
|
export interface CreateBioTemplatePackCollectionOptions {
|
|
7
7
|
metadata?: Record<string, unknown>;
|
|
@@ -461,6 +461,21 @@ export interface CreateLcmsBatchCollectionOptions {
|
|
|
461
461
|
includeQc?: boolean;
|
|
462
462
|
metadata?: Record<string, unknown>;
|
|
463
463
|
}
|
|
464
|
+
export interface CreateTargetedMetabolomicsCollectionOptions {
|
|
465
|
+
samples?: Array<string | SampleRecord>;
|
|
466
|
+
metabolites?: Array<string | AssayFeature>;
|
|
467
|
+
internalStandards?: Array<string | ReagentTemplateInput>;
|
|
468
|
+
standardConcentrations?: number[];
|
|
469
|
+
concentrationUnit?: string;
|
|
470
|
+
responseUnit?: string;
|
|
471
|
+
calibrationAnalyte?: string;
|
|
472
|
+
instrument?: string;
|
|
473
|
+
method?: string | InstrumentMethodInput;
|
|
474
|
+
prepType?: SamplePrepStepType;
|
|
475
|
+
outputVolume?: number;
|
|
476
|
+
includeQc?: boolean;
|
|
477
|
+
metadata?: Record<string, unknown>;
|
|
478
|
+
}
|
|
464
479
|
export interface CreateElisaAssayCollectionOptions {
|
|
465
480
|
samples?: Array<string | SampleRecord>;
|
|
466
481
|
analyte?: string;
|
|
@@ -1957,10 +1957,12 @@ var NumberInput_default = /* @__PURE__ */ defineComponent({
|
|
|
1957
1957
|
const emit = __emit;
|
|
1958
1958
|
const isSliderMode = computed(() => props.min !== void 0 && props.max !== void 0);
|
|
1959
1959
|
const sliderPercent = computed(() => {
|
|
1960
|
-
|
|
1961
|
-
const
|
|
1960
|
+
const min = props.min;
|
|
1961
|
+
const max = props.max;
|
|
1962
|
+
if (min === void 0 || max === void 0 || props.modelValue === void 0) return 0;
|
|
1963
|
+
const range = max - min;
|
|
1962
1964
|
if (range === 0) return 0;
|
|
1963
|
-
return (props.modelValue -
|
|
1965
|
+
return (props.modelValue - min) / range * 100;
|
|
1964
1966
|
});
|
|
1965
1967
|
const canDecrement = computed(() => {
|
|
1966
1968
|
if (props.modelValue === void 0) return true;
|
|
@@ -3855,8 +3857,9 @@ var UnitInput_default = /* @__PURE__ */ defineComponent({
|
|
|
3855
3857
|
const groups = /* @__PURE__ */ new Map();
|
|
3856
3858
|
const ungrouped = [];
|
|
3857
3859
|
for (const u of props.units) if (u.group) {
|
|
3858
|
-
|
|
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|
-
|
|
3860
|
+
const group = groups.get(u.group);
|
|
3861
|
+
if (group) group.push(u);
|
|
3862
|
+
else groups.set(u.group, [u]);
|
|
3860
3863
|
} else ungrouped.push(u);
|
|
3861
3864
|
return {
|
|
3862
3865
|
groups,
|
|
@@ -4010,10 +4013,11 @@ var ConcentrationInput_default = /* @__PURE__ */ defineComponent({
|
|
|
4010
4013
|
const emit = __emit;
|
|
4011
4014
|
const { unitCategories, getConversionHint } = useConcentrationUnits();
|
|
4012
4015
|
const filteredCategories = computed(() => {
|
|
4013
|
-
|
|
4016
|
+
const allowedUnits = props.allowedUnits;
|
|
4017
|
+
if (!allowedUnits || allowedUnits.length === 0) return unitCategories.value;
|
|
4014
4018
|
return unitCategories.value.map((cat) => ({
|
|
4015
4019
|
label: cat.label,
|
|
4016
|
-
units: cat.units.filter((u) =>
|
|
4020
|
+
units: cat.units.filter((u) => allowedUnits.includes(u))
|
|
4017
4021
|
})).filter((cat) => cat.units.length > 0);
|
|
4018
4022
|
});
|
|
4019
4023
|
const availableUnits = computed(() => {
|
|
@@ -4500,7 +4504,12 @@ function controlsToSettingsSchema(controls, options = {}) {
|
|
|
4500
4504
|
icon: typeof config.icon === "string" ? config.icon : void 0,
|
|
4501
4505
|
fields: sectionControls.map(controlToFormField),
|
|
4502
4506
|
columns: config.columns ?? options.columns ?? 1,
|
|
4503
|
-
condition: config.condition
|
|
4507
|
+
condition: config.condition,
|
|
4508
|
+
access: config.access,
|
|
4509
|
+
visibleFor: config.visibleFor,
|
|
4510
|
+
requiresAdmin: config.requiresAdmin,
|
|
4511
|
+
permissions: config.permissions,
|
|
4512
|
+
anyPermissions: config.anyPermissions
|
|
4504
4513
|
};
|
|
4505
4514
|
}) };
|
|
4506
4515
|
}
|
|
@@ -4792,6 +4801,11 @@ function controlToFormField(control) {
|
|
|
4792
4801
|
readonly: definition.readonly,
|
|
4793
4802
|
validation: validationForControl(definition),
|
|
4794
4803
|
condition: definition.condition,
|
|
4804
|
+
access: definition.access,
|
|
4805
|
+
visibleFor: definition.visibleFor,
|
|
4806
|
+
requiresAdmin: definition.requiresAdmin,
|
|
4807
|
+
permissions: definition.permissions,
|
|
4808
|
+
anyPermissions: definition.anyPermissions,
|
|
4795
4809
|
colSpan: definition.colSpan,
|
|
4796
4810
|
props
|
|
4797
4811
|
};
|
|
@@ -5591,6 +5605,54 @@ var bioTemplatePresets = [
|
|
|
5591
5605
|
"SampleSelector"
|
|
5592
5606
|
]
|
|
5593
5607
|
},
|
|
5608
|
+
{
|
|
5609
|
+
name: "targeted-metabolomics",
|
|
5610
|
+
label: "Targeted metabolomics",
|
|
5611
|
+
category: "bio-template-preset",
|
|
5612
|
+
purpose: "Sample metadata, extraction prep, internal standards, LC/GC-MS sequence, calibration curve, and metabolite readout matrix for quantitative metabolomics.",
|
|
5613
|
+
templates: [
|
|
5614
|
+
"sample-sheet",
|
|
5615
|
+
"sample-prep",
|
|
5616
|
+
"reagent-list",
|
|
5617
|
+
"instrument-run",
|
|
5618
|
+
"calibration-curve",
|
|
5619
|
+
"assay-matrix"
|
|
5620
|
+
],
|
|
5621
|
+
aliases: [
|
|
5622
|
+
"targeted metabolomics",
|
|
5623
|
+
"quantitative metabolomics",
|
|
5624
|
+
"lc-ms metabolomics",
|
|
5625
|
+
"gc-ms metabolomics",
|
|
5626
|
+
"targeted lcms",
|
|
5627
|
+
"metabolite quantitation",
|
|
5628
|
+
"mass spec quantitation",
|
|
5629
|
+
"internal standards",
|
|
5630
|
+
"peak area ratio"
|
|
5631
|
+
],
|
|
5632
|
+
python_import: "from mint_sdk.templates import create_targeted_metabolomics_collection, save_template_collection",
|
|
5633
|
+
python_example: "create_targeted_metabolomics_collection(samples=[\"S001\", \"S002\"], metabolites=[\"Glucose\", \"Lactate\"], internal_standards=[\"13C Glucose\"], instrument=\"LC-MS\")",
|
|
5634
|
+
frontend_import: "import { createTargetedMetabolomicsCollection, toInstrumentRunDataFrame, toCalibrationCurveDataFrame, toAssayMatrixDataFrame, toTemplateDataFrame } from '@morscherlab/mint-sdk/templates'",
|
|
5635
|
+
frontend_adapters: [
|
|
5636
|
+
"toTemplateDataFrame",
|
|
5637
|
+
"toSamplePrepDataFrame",
|
|
5638
|
+
"toReagentDataFrame",
|
|
5639
|
+
"toInstrumentRunDataFrame",
|
|
5640
|
+
"toInstrumentRunSteps",
|
|
5641
|
+
"toInstrumentRunScheduleEvents",
|
|
5642
|
+
"toCalibrationCurveDataFrame",
|
|
5643
|
+
"toAssayMatrixDataFrame",
|
|
5644
|
+
"toAssayMatrixSampleOptions"
|
|
5645
|
+
],
|
|
5646
|
+
components: [
|
|
5647
|
+
"DataFrame",
|
|
5648
|
+
"ReagentList",
|
|
5649
|
+
"ExperimentTimeline",
|
|
5650
|
+
"ScheduleCalendar",
|
|
5651
|
+
"FitPanel",
|
|
5652
|
+
"ChartContainer",
|
|
5653
|
+
"SampleSelector"
|
|
5654
|
+
]
|
|
5655
|
+
},
|
|
5594
5656
|
{
|
|
5595
5657
|
name: "elisa-assay",
|
|
5596
5658
|
label: "ELISA assay",
|
|
@@ -6396,6 +6458,72 @@ function createLcmsBatchCollection(options = {}) {
|
|
|
6396
6458
|
...options.metadata ?? {}
|
|
6397
6459
|
});
|
|
6398
6460
|
}
|
|
6461
|
+
function createTargetedMetabolomicsCollection(options = {}) {
|
|
6462
|
+
const sampleRecords = presetSampleRecords(options.samples ?? ["S001", "S002"]);
|
|
6463
|
+
const responseUnit = options.responseUnit ?? "peak area ratio";
|
|
6464
|
+
const concentrationUnit = options.concentrationUnit ?? "uM";
|
|
6465
|
+
const metaboliteFeatures = normalizeMetaboliteFeatures(options.metabolites ?? [
|
|
6466
|
+
"Glucose",
|
|
6467
|
+
"Lactate",
|
|
6468
|
+
"Pyruvate"
|
|
6469
|
+
], responseUnit);
|
|
6470
|
+
const sampleSheet = createSampleSheetTemplate({ samples: sampleRecords });
|
|
6471
|
+
const samplePrep = createSamplePrepTemplate({
|
|
6472
|
+
samples: sampleRecords.map((sample) => sample.sampleId),
|
|
6473
|
+
prepType: options.prepType ?? "extraction",
|
|
6474
|
+
protocolName: "Metabolomics sample preparation",
|
|
6475
|
+
outputVolume: options.outputVolume ?? 50,
|
|
6476
|
+
metadata: { assay: "targeted-metabolomics" }
|
|
6477
|
+
});
|
|
6478
|
+
const reagents = createReagentListTemplate({
|
|
6479
|
+
reagents: normalizeInternalStandardReagents(options.internalStandards ?? ["Stable isotope internal standard mix"]),
|
|
6480
|
+
metadata: { assay: "targeted-metabolomics" }
|
|
6481
|
+
});
|
|
6482
|
+
const calibrationCurve = createCalibrationCurveTemplate({
|
|
6483
|
+
concentrations: options.standardConcentrations ?? [
|
|
6484
|
+
.1,
|
|
6485
|
+
1,
|
|
6486
|
+
10,
|
|
6487
|
+
100
|
|
6488
|
+
],
|
|
6489
|
+
analyte: options.calibrationAnalyte ?? firstFeatureName(metaboliteFeatures, "Metabolite panel"),
|
|
6490
|
+
unit: concentrationUnit,
|
|
6491
|
+
responseUnit,
|
|
6492
|
+
model: "linear-weighted-1-x",
|
|
6493
|
+
includeQc: options.includeQc,
|
|
6494
|
+
metadata: { assay: "targeted-metabolomics" }
|
|
6495
|
+
});
|
|
6496
|
+
return createTemplateCollection([
|
|
6497
|
+
sampleSheet,
|
|
6498
|
+
samplePrep,
|
|
6499
|
+
reagents,
|
|
6500
|
+
createInstrumentRunTemplate({
|
|
6501
|
+
items: targetedMetabolomicsRunItems(sampleRecords, calibrationCurve.data.points, options.includeQc !== false),
|
|
6502
|
+
method: options.method ?? "Targeted metabolomics",
|
|
6503
|
+
instrument: options.instrument ?? "LC-MS",
|
|
6504
|
+
includeBlanks: false,
|
|
6505
|
+
includeQc: false,
|
|
6506
|
+
metadata: { assay: "targeted-metabolomics" }
|
|
6507
|
+
}),
|
|
6508
|
+
calibrationCurve,
|
|
6509
|
+
createAssayMatrixTemplate({
|
|
6510
|
+
samples: sampleRecords.map((sample) => ({
|
|
6511
|
+
sampleId: sample.sampleId,
|
|
6512
|
+
name: sample.name,
|
|
6513
|
+
group: sample.group,
|
|
6514
|
+
metadata: sample.metadata ?? {}
|
|
6515
|
+
})),
|
|
6516
|
+
features: metaboliteFeatures,
|
|
6517
|
+
metadata: {
|
|
6518
|
+
assay: "targeted-metabolomics",
|
|
6519
|
+
responseUnit
|
|
6520
|
+
}
|
|
6521
|
+
})
|
|
6522
|
+
], {
|
|
6523
|
+
preset: "targeted-metabolomics",
|
|
6524
|
+
...options.metadata ?? {}
|
|
6525
|
+
});
|
|
6526
|
+
}
|
|
6399
6527
|
function createElisaAssayCollection(options = {}) {
|
|
6400
6528
|
const sampleRecords = presetSampleRecords(options.samples ?? ["Control", "Treatment"]);
|
|
6401
6529
|
const analyte = options.analyte ?? "Analyte";
|
|
@@ -6625,6 +6753,7 @@ function createBioTemplatePresetCollection(name, options = {}) {
|
|
|
6625
6753
|
if (preset.name === "wellplate-screen") return createWellPlateScreenCollection(options);
|
|
6626
6754
|
if (preset.name === "qpcr-expression") return createQpcrExpressionCollection(options);
|
|
6627
6755
|
if (preset.name === "lcms-batch") return createLcmsBatchCollection(options);
|
|
6756
|
+
if (preset.name === "targeted-metabolomics") return createTargetedMetabolomicsCollection(options);
|
|
6628
6757
|
if (preset.name === "elisa-assay") return createElisaAssayCollection(options);
|
|
6629
6758
|
if (preset.name === "flow-cytometry-assay") return createFlowCytometryAssayCollection(options);
|
|
6630
6759
|
if (preset.name === "western-blot-assay") return createWesternBlotAssayCollection(options);
|
|
@@ -6656,6 +6785,29 @@ function bioTemplatePresetControlValuesToOptions(name, values) {
|
|
|
6656
6785
|
method: readString(values.method, "Default method"),
|
|
6657
6786
|
includeQc: readBoolean(values.includeQc, true)
|
|
6658
6787
|
};
|
|
6788
|
+
if (preset.name === "targeted-metabolomics") return {
|
|
6789
|
+
samples: readStringList(values.sampleNames, ["S001", "S002"]),
|
|
6790
|
+
metabolites: readStringList(values.metaboliteNames, [
|
|
6791
|
+
"Glucose",
|
|
6792
|
+
"Lactate",
|
|
6793
|
+
"Pyruvate"
|
|
6794
|
+
]),
|
|
6795
|
+
internalStandards: readStringList(values.internalStandards, ["Stable isotope internal standard mix"]),
|
|
6796
|
+
standardConcentrations: readNumberList(values.standardConcentrations, [
|
|
6797
|
+
.1,
|
|
6798
|
+
1,
|
|
6799
|
+
10,
|
|
6800
|
+
100
|
|
6801
|
+
]),
|
|
6802
|
+
concentrationUnit: readString(values.concentrationUnit, "uM"),
|
|
6803
|
+
responseUnit: readString(values.responseUnit, "peak area ratio"),
|
|
6804
|
+
calibrationAnalyte: readOptionalString(values.calibrationAnalyte),
|
|
6805
|
+
instrument: readString(values.instrument, "LC-MS"),
|
|
6806
|
+
method: readString(values.method, "Targeted metabolomics"),
|
|
6807
|
+
prepType: readString(values.prepType, "extraction"),
|
|
6808
|
+
outputVolume: readNumber(values.outputVolume, 50),
|
|
6809
|
+
includeQc: readBoolean(values.includeQc, true)
|
|
6810
|
+
};
|
|
6659
6811
|
if (preset.name === "elisa-assay") return {
|
|
6660
6812
|
samples: readStringList(values.sampleNames, ["Control", "Treatment"]),
|
|
6661
6813
|
analyte: readString(values.analyte, "Analyte"),
|
|
@@ -7034,6 +7186,71 @@ function normalizeReagent(reagent) {
|
|
|
7034
7186
|
metadata: reagent.metadata ?? {}
|
|
7035
7187
|
};
|
|
7036
7188
|
}
|
|
7189
|
+
function normalizeMetaboliteFeatures(metabolites, responseUnit) {
|
|
7190
|
+
return metabolites.map((metabolite, index) => {
|
|
7191
|
+
if (typeof metabolite === "string") return {
|
|
7192
|
+
id: idFromName(metabolite, `metabolite-${index + 1}`),
|
|
7193
|
+
name: metabolite,
|
|
7194
|
+
type: "metabolite",
|
|
7195
|
+
unit: responseUnit,
|
|
7196
|
+
metadata: { quantitation: "targeted" }
|
|
7197
|
+
};
|
|
7198
|
+
const feature = normalizeAssayFeature(metabolite);
|
|
7199
|
+
return {
|
|
7200
|
+
...feature,
|
|
7201
|
+
type: feature.type ?? "metabolite",
|
|
7202
|
+
unit: feature.unit ?? responseUnit,
|
|
7203
|
+
metadata: {
|
|
7204
|
+
quantitation: "targeted",
|
|
7205
|
+
...feature.metadata
|
|
7206
|
+
}
|
|
7207
|
+
};
|
|
7208
|
+
});
|
|
7209
|
+
}
|
|
7210
|
+
function normalizeInternalStandardReagents(internalStandards) {
|
|
7211
|
+
return internalStandards.map((standard, index) => {
|
|
7212
|
+
if (typeof standard === "string") return {
|
|
7213
|
+
id: idFromName(standard, `internal-standard-${index + 1}`),
|
|
7214
|
+
name: standard,
|
|
7215
|
+
kind: "compound",
|
|
7216
|
+
metadata: { role: "internal-standard" }
|
|
7217
|
+
};
|
|
7218
|
+
const reagent = normalizeReagent(standard);
|
|
7219
|
+
return {
|
|
7220
|
+
...reagent,
|
|
7221
|
+
kind: standard.kind ?? "compound",
|
|
7222
|
+
metadata: {
|
|
7223
|
+
role: "internal-standard",
|
|
7224
|
+
...reagent.metadata
|
|
7225
|
+
}
|
|
7226
|
+
};
|
|
7227
|
+
});
|
|
7228
|
+
}
|
|
7229
|
+
function targetedMetabolomicsRunItems(samples, calibrationPoints, includeQc) {
|
|
7230
|
+
const calibrationItems = calibrationPoints.filter((point) => point.role !== "qc" || includeQc).filter((point) => point.role === "blank" || point.role === "standard" || point.role === "qc").map((point) => ({
|
|
7231
|
+
id: `${point.id}-run`,
|
|
7232
|
+
kind: calibrationRunItemKind(point.role),
|
|
7233
|
+
name: point.level,
|
|
7234
|
+
metadata: {
|
|
7235
|
+
concentration: point.concentration,
|
|
7236
|
+
unit: point.unit,
|
|
7237
|
+
role: point.role
|
|
7238
|
+
}
|
|
7239
|
+
}));
|
|
7240
|
+
const sampleItems = samples.map((sample) => ({
|
|
7241
|
+
sampleId: sample.sampleId,
|
|
7242
|
+
name: sample.name ?? sample.sampleId,
|
|
7243
|
+
kind: "sample"
|
|
7244
|
+
}));
|
|
7245
|
+
return [...calibrationItems, ...sampleItems];
|
|
7246
|
+
}
|
|
7247
|
+
function calibrationRunItemKind(role) {
|
|
7248
|
+
if (role === "blank" || role === "standard" || role === "qc") return role;
|
|
7249
|
+
return "standard";
|
|
7250
|
+
}
|
|
7251
|
+
function firstFeatureName(features, fallback) {
|
|
7252
|
+
return features.find((feature) => feature.name)?.name ?? fallback;
|
|
7253
|
+
}
|
|
7037
7254
|
function normalizeDateString(value) {
|
|
7038
7255
|
if (value === void 0 || value === null) return void 0;
|
|
7039
7256
|
return value instanceof Date ? value.toISOString() : value;
|
|
@@ -7208,6 +7425,10 @@ function readInteger(value, fallback) {
|
|
|
7208
7425
|
const parsed = typeof value === "number" ? value : typeof value === "string" ? Number(value) : NaN;
|
|
7209
7426
|
return Number.isFinite(parsed) ? Math.max(1, Math.round(parsed)) : fallback;
|
|
7210
7427
|
}
|
|
7428
|
+
function readNumber(value, fallback) {
|
|
7429
|
+
const parsed = typeof value === "number" ? value : typeof value === "string" ? Number(value) : NaN;
|
|
7430
|
+
return Number.isFinite(parsed) ? parsed : fallback;
|
|
7431
|
+
}
|
|
7211
7432
|
function readBoolean(value, fallback) {
|
|
7212
7433
|
return typeof value === "boolean" ? value : fallback;
|
|
7213
7434
|
}
|
|
@@ -9261,6 +9482,99 @@ var presetControlSchemas = {
|
|
|
9261
9482
|
...templateControlSchemas["instrument-run"],
|
|
9262
9483
|
...templateControlSchemas["assay-matrix"]
|
|
9263
9484
|
},
|
|
9485
|
+
"targeted-metabolomics": {
|
|
9486
|
+
sampleNames: {
|
|
9487
|
+
type: "tags",
|
|
9488
|
+
label: "Samples",
|
|
9489
|
+
default: ["S001", "S002"],
|
|
9490
|
+
section: "samples",
|
|
9491
|
+
sectionLabel: "Samples",
|
|
9492
|
+
sectionSubtitle: "Unknowns and QC pool",
|
|
9493
|
+
view: "run",
|
|
9494
|
+
sidebar: {
|
|
9495
|
+
icon: ICONS.samples,
|
|
9496
|
+
iconColor: "#10b981",
|
|
9497
|
+
iconBg: "#d1fae5"
|
|
9498
|
+
}
|
|
9499
|
+
},
|
|
9500
|
+
metaboliteNames: {
|
|
9501
|
+
type: "tags",
|
|
9502
|
+
label: "Metabolites",
|
|
9503
|
+
default: [
|
|
9504
|
+
"Glucose",
|
|
9505
|
+
"Lactate",
|
|
9506
|
+
"Pyruvate"
|
|
9507
|
+
],
|
|
9508
|
+
section: "features",
|
|
9509
|
+
sectionLabel: "Metabolites",
|
|
9510
|
+
sectionSubtitle: "Quantitation panel",
|
|
9511
|
+
view: "analysis",
|
|
9512
|
+
sidebar: {
|
|
9513
|
+
icon: ICONS.table,
|
|
9514
|
+
iconColor: "#0ea5e9",
|
|
9515
|
+
iconBg: "#e0f2fe"
|
|
9516
|
+
}
|
|
9517
|
+
},
|
|
9518
|
+
internalStandards: {
|
|
9519
|
+
type: "tags",
|
|
9520
|
+
label: "Internal standards",
|
|
9521
|
+
default: ["Stable isotope internal standard mix"],
|
|
9522
|
+
section: "standards",
|
|
9523
|
+
sectionLabel: "Standards",
|
|
9524
|
+
sectionSubtitle: "Calibration and internal standards",
|
|
9525
|
+
view: "analysis",
|
|
9526
|
+
sidebar: {
|
|
9527
|
+
icon: ICONS.dose,
|
|
9528
|
+
iconColor: "#8b5cf6",
|
|
9529
|
+
iconBg: "#ede9fe"
|
|
9530
|
+
}
|
|
9531
|
+
},
|
|
9532
|
+
standardConcentrations: {
|
|
9533
|
+
type: "tags",
|
|
9534
|
+
label: "Calibration levels",
|
|
9535
|
+
default: [
|
|
9536
|
+
"0.1",
|
|
9537
|
+
"1",
|
|
9538
|
+
"10",
|
|
9539
|
+
"100"
|
|
9540
|
+
],
|
|
9541
|
+
section: "standards",
|
|
9542
|
+
view: "analysis"
|
|
9543
|
+
},
|
|
9544
|
+
concentrationUnit: {
|
|
9545
|
+
label: "Concentration unit",
|
|
9546
|
+
default: "uM",
|
|
9547
|
+
options: CONCENTRATION_UNITS,
|
|
9548
|
+
section: "standards",
|
|
9549
|
+
view: "analysis"
|
|
9550
|
+
},
|
|
9551
|
+
responseUnit: {
|
|
9552
|
+
label: "Response unit",
|
|
9553
|
+
default: "peak area ratio",
|
|
9554
|
+
section: "readout",
|
|
9555
|
+
sectionLabel: "Readout",
|
|
9556
|
+
view: "analysis",
|
|
9557
|
+
sidebar: {
|
|
9558
|
+
icon: ICONS.table,
|
|
9559
|
+
iconColor: "#0ea5e9",
|
|
9560
|
+
iconBg: "#e0f2fe"
|
|
9561
|
+
}
|
|
9562
|
+
},
|
|
9563
|
+
instrument: {
|
|
9564
|
+
...templateControlSchemas["instrument-run"].instrument,
|
|
9565
|
+
default: "LC-MS"
|
|
9566
|
+
},
|
|
9567
|
+
method: {
|
|
9568
|
+
...templateControlSchemas["instrument-run"].method,
|
|
9569
|
+
default: "Targeted metabolomics"
|
|
9570
|
+
},
|
|
9571
|
+
prepType: {
|
|
9572
|
+
...templateControlSchemas["sample-prep"].prepType,
|
|
9573
|
+
default: "extraction"
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9574
|
+
},
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9575
|
+
outputVolume: templateControlSchemas["sample-prep"].outputVolume,
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9576
|
+
includeQc: templateControlSchemas["instrument-run"].includeQc
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|
9577
|
+
},
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9264
9578
|
"elisa-assay": {
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|
9265
9579
|
sampleNames: {
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|
9266
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|
type: "tags",
|
|
@@ -9577,6 +9891,6 @@ function capitalize(value) {
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|
return value.charAt(0).toUpperCase() + value.slice(1);
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|
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|
}
|
|
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|
//#endregion
|
|
9580
|
-
export { toSampleOptions as $,
|
|
9894
|
+
export { toSampleOptions as $, addMinutes$1 as $n, validateSampleSheetData as $t, toFlowPanelColumns as A, defineWellPlateDoseComponentBindings as An, createReagentListTemplate as At, toProtocolDataFrame as B, UnitInput_default as Bn, ensureTemplateFromCollection as Bt, toAssayMatrixRows as C, controlsToViewItems as Cn, BaseToggle_default as Cr, createFlowCytometryPanelTemplate as Ct, toCalibrationCurveRows as D, defineDoseCalculatorControlProps as Dn, BaseTextarea_default as Dr, createProtocolStepsTemplate as Dt, toCalibrationCurveDataFrame as E, defineControls as En, normalizeOptionInput as Er, createPlateMapTemplate as Et, toInstrumentRunRows as F, useControlSchema as Fn, createTemplateEnvelope as Ft, toQpcrRows as G, FormulaInput_default as Gn, validateDoseResponseData as Gt, toProtocolSteps as H, MoleculeInput_default as Hn, getTemplateData as Ht, toInstrumentRunScheduleEvents as I, useControlWorkspace as In, createTimeCourseTemplate as It, toReagentDataFrame as J, DateTimePicker_default as Jn, validatePlateMapData as Jt, toQpcrWellPlateWells as K, ATOMIC_WEIGHTS as Kn, validateFlowCytometryPanelData as Kt, toInstrumentRunSteps as L, getFieldRegistryEntry as Ln, createWellPlateScreenCollection as Lt, toFlowPanelRows as M, getControlDefaults as Mn, createSampleSheetTemplate as Mt, toInstrumentRunColumns as N, getDefaultControlView as Nn, createTargetedMetabolomicsCollection as Nt, toDoseConditions as O, defineDoseDesignControlModel as On, BaseInput_default as Or, createQpcrExpressionCollection as Ot, toInstrumentRunDataFrame as P, mergeControlWorkspaceOptions as Pn, createTemplateCollection as Pt, toSampleDataFrame as Q, TimePicker_default as Qn, validateSamplePrepData as Qt, toPlateMapEditorState as R, getTypeDefault as Rn, createWesternBlotAssayCollection as Rt, toAssayMatrixDataFrame as S, controlsToViewIds as Sn, BaseRadioGroup_default as Sr, createFlowCytometryAssayCollection as St, toCalibrationCurveColumns as T, defineControlModel as Tn, BaseSelect_default as Tr, createLcmsBatchCollection as Tt, toQpcrColumns as U, SequenceInput_default as Un, validateAssayMatrixData as Ut, toProtocolRows as V, useConcentrationUnits as Vn, extractTemplateCollection as Vt, toQpcrDataFrame as W, useSequenceUtils as Wn, validateCalibrationCurveData as Wt, toReagentRows as X, NumberInput_default as Xn, validateQpcrPlateData as Xt, toReagentListItems as Y, FileUploader_default as Yn, validateProtocolStepsData as Yt, toSampleColumns as Z, TagsInput_default as Zn, validateReagentListData as Zt, toBioTemplateComponentPropsByComponent as _, controlsToSectionFormSchema as _n, MultiSelect_default as _r, createBioTemplatePresetCollectionFromControls as _t, getBioTemplateControlDefaults as a, bioTemplatePacks as an, formatTime as ar, toTimeCourseColumns as at, toBioTemplateComponentUsage as b, controlsToSidebarPanels as bn, useEventListener as br, createDoseResponseTemplate as bt, listBioTemplatePresetControlSchemas as c, searchBioTemplatePacks as cn, generateTimeSlots as cr, toTimeCourseSteps as ct, getBioTemplateComponentProps as d, listBioTemplateCatalog as dn, rangesOverlap as dr, TEMPLATE_COLLECTION_KEY as dt, validateTimeCourseData as en, compareTime as er, toSamplePrepColumns as et, listBioTemplateComponentBindings as f, searchBioTemplateCatalog as fn, snapToSlot as fr, assertTemplateEnvelope as ft, toBioTemplateComponentProps as g, controlsToFormSchema as gn, useDropdownState as gr, createBioTemplatePresetCollection as gt, toBioTemplateComponentImports as h, controlValuesToComponentProps as hn, DatePicker_default as hr, createBioTemplatePackCollection as ht, createBioTemplateControlToolkit as i, searchBioTemplatePresets as in, formatDuration as ir, toTemplateDataFrame as it, toFlowPanelDataFrame as j, defineWellPlateDoseControlProps as jn, createSamplePrepTemplate as jt, toDoseLayoutState as k, defineWellPlateControlProps as kn, createQpcrPlateTemplate as kt, requireBioTemplateControlSchema as l, bioTemplateCatalog as ln, isTimeInRange as lr, toWellMapArray as lt, toBioTemplateComponentBindingsById as m, controlValuesToComponentBindingsById as mn, useTimeUtils as mr, createAssayMatrixTemplate as mt, bioTemplateControlsToSectionFormSchemas as n, getBioTemplatePresetInfo as nn, findAvailableSlots as nr, toSamplePrepRows as nt, getBioTemplateControlSchema as o, getBioTemplatePackInfo as on, formatTimeSlot as or, toTimeCourseDataFrame as ot, toBioTemplateComponentBindings as p, controlValuesToComponentBindings as pn, toMinutes as pr, bioTemplatePresetControlValuesToOptions as pt, toReagentColumns as q, useChemicalFormula as qn, validateInstrumentRunData as qt, bioTemplateControlsToSidebarPanels as r, listBioTemplatePresets as rn, findNearestTimeSlotIndex as rr, toSampleRows as rt, listBioTemplateControlSchemas as s, listBioTemplatePacks as sn, fromMinutes as sr, toTimeCourseRows as st, bioTemplateControlsToFormSchema as t, bioTemplatePresets as tn, durationMinutes as tr, toSamplePrepDataFrame as tt, getBioTemplateComponentBindings as u, getBioTemplateInfo as un, parseTime as ur, toWellPlateWells as ut, toBioTemplateComponentPropsById as v, controlsToSectionFormSchemas as vn, useListSelection as vr, createCalibrationCurveTemplate as vt, toAssayMatrixSampleOptions as w, defineControlComponentBindings as wn, BaseCheckbox_default as wr, createInstrumentRunTemplate as wt, toAssayMatrixColumns as x, controlsToTopBarSettingsConfig as xn, BaseSlider_default as xr, createElisaAssayCollection as xt, toBioTemplateComponentSnippets as y, controlsToSettingsSchema as yn, useSelectionLimit as yr, createDefaultBioTemplate as yt, toProtocolColumns as z, ConcentrationInput_default as zn, ensureTemplateEnvelope as zt };
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|
9581
9895
|
|
|
9582
|
-
//# sourceMappingURL=templates-
|
|
9896
|
+
//# sourceMappingURL=templates-BorLR_7p.js.map
|