@morscherlab/mint-sdk 1.0.0-beta.7 → 1.0.0-rc.2

package/README.md

@@ -318,7 +318,7 @@ template presets such as `createWellPlateScreenCollection()`,
 - `FileUploader` - Drag-and-drop file upload with file/folder mode support
 
 ### Sample Management Components
-- `SampleSelector` - Hierarchical sample grouping with auto-group and CSV metadata import
+- `SampleSelector` - Hierarchical sample grouping with auto-group, CSV metadata import, and optional experiment `design_data` sample loading
 - `AutoGroupModal` - Smart sample grouping wizard for names and design metadata
 - `GroupAssigner` - Drag-and-drop group assignment for comparisons (e.g., Control vs Treatment)
 
@@ -416,6 +416,14 @@ if (isIntegrated.value) {
 }
 ```
 
+### `useExperimentSamples(options?)`
+Load experiment `design_data` and derive `SampleSelector`-compatible sample values.
+
+```typescript
+const { samples, sampleOptions, fetch } = useExperimentSamples({ experimentId: 42 })
+await fetch()
+```
+
 ## Stores
 
 ### `useAuthStore`

package/dist/__tests__/components/LcmsSequenceTable.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/components/ProgressBar.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/components/RackEditor.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/components/SequenceProgressBar.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/composables/useExperimentSamples.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/composables/useProtocolTemplates.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/stores/settings.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/utils/instrument.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/utils/lcms.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/utils/permissions.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/__tests__/utils/rack.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/{auth-QQj2kkze.js → auth-B7g4J4ZF.js}

@@ -2,6 +2,7 @@ import { computed, ref, watch } from "vue";
 import { defineStore } from "pinia";
 //#region src/stores/settings.ts
 var STORAGE_KEY = "mint-settings";
+var LEGACY_STORAGE_KEY = "mld-settings";
 function getDefaultServerHost() {
 	if (typeof window !== "undefined" && window.location.hostname !== "localhost") return window.location.hostname;
 	return "localhost";
@@ -51,6 +52,17 @@ function loadSettings() {
 				...parsed
 			};
 		}
+		const legacyStored = localStorage.getItem(LEGACY_STORAGE_KEY);
+		if (legacyStored) {
+			const parsed = JSON.parse(legacyStored);
+			const migrated = {
+				...defaultSettings,
+				...parsed
+			};
+			localStorage.setItem(STORAGE_KEY, JSON.stringify(migrated));
+			localStorage.removeItem(LEGACY_STORAGE_KEY);
+			return migrated;
+		}
 	} catch (e) {
 		console.warn("Failed to load settings from localStorage:", e);
 	}
@@ -187,10 +199,112 @@ var useSettingsStore = defineStore("mint-settings", () => {
 	};
 });
 //#endregion
+//#region src/permissions.ts
+var ADMIN_ROLE = "admin";
+var ADMIN_PANEL_PERMISSIONS = [
+	"users.view",
+	"users.invite",
+	"users.manage",
+	"platform.configure",
+	"platform.view_logs",
+	"plugins.configure",
+	"plugins.install"
+];
+function getRoleInfo(user) {
+	return user?.roleObj ?? user?.role_obj ?? null;
+}
+function isAdminRole(role) {
+	return role === ADMIN_ROLE;
+}
+function isAdminUser(user) {
+	return isAdminRole(user?.role) || getRoleInfo(user)?.slug === "admin";
+}
+function getAccessAudience(user) {
+	return isAdminUser(user) ? "admin" : "user";
+}
+function getUserPermissions(user) {
+	const rolePermissions = getRoleInfo(user)?.permissions;
+	if (rolePermissions?.length) return [...rolePermissions];
+	return [...user?.permissions ?? []];
+}
+function hasAllPermissions(user, permissions = []) {
+	if (permissions.length === 0) return true;
+	if (isAdminUser(user)) return true;
+	const granted = new Set(getUserPermissions(user));
+	return permissions.every((permission) => granted.has(permission));
+}
+function hasAnyPermission(user, permissions = []) {
+	if (permissions.length === 0) return true;
+	if (isAdminUser(user)) return true;
+	const granted = new Set(getUserPermissions(user));
+	return permissions.some((permission) => granted.has(permission));
+}
+function canAccessAdmin(user) {
+	return isAdminUser(user) || hasAnyPermission(user, ADMIN_PANEL_PERMISSIONS);
+}
+function canAccessPlugin(user, pluginName) {
+	if (!pluginName) return true;
+	const access = getRoleInfo(user)?.plugin_access;
+	if (!access || access === "all") return true;
+	return Array.isArray(access) && access.includes(pluginName);
+}
+function normalizeAccessPolicy(rule) {
+	if (!rule) return {};
+	const { access: nested, ...direct } = rule;
+	return {
+		...nested ?? {},
+		...direct,
+		..."visibleFor" in rule && rule.visibleFor !== void 0 ? { visibleFor: rule.visibleFor } : {},
+		..."requiresAdmin" in rule && rule.requiresAdmin !== void 0 ? { requiresAdmin: rule.requiresAdmin } : {},
+		..."permissions" in rule && rule.permissions !== void 0 ? { permissions: rule.permissions } : {},
+		..."anyPermissions" in rule && rule.anyPermissions !== void 0 ? { anyPermissions: rule.anyPermissions } : {}
+	};
+}
+function canAccessByPolicy(user, rule, isAuthenticated = user !== null && user !== void 0) {
+	const policy = normalizeAccessPolicy(rule);
+	if (policy.requiresAuth && !isAuthenticated) return false;
+	if (policy.requiresAdmin && !isAdminUser(user)) return false;
+	if (!audienceAllowsUser(policy.visibleFor ?? policy.audience, user)) return false;
+	if (!hasAllPermissions(user, policy.permissions)) return false;
+	if (!hasAnyPermission(user, policy.anyPermissions)) return false;
+	if (policy.plugin && !canAccessPlugin(user, policy.plugin)) return false;
+	return true;
+}
+function audienceAllowsUser(audience, user) {
+	if (audience === void 0) return true;
+	const allowed = Array.isArray(audience) ? audience : [audience];
+	if (allowed.includes("all")) return true;
+	return allowed.includes(getAccessAudience(user));
+}
+//#endregion
 //#region src/stores/auth.ts
 var AUTH_TOKEN_KEY = "mint-auth-token";
 var AUTH_EXPIRES_KEY = "mint-auth-expires";
-var hasLocalStorage = typeof localStorage !== "undefined" && typeof localStorage.getItem === "function";
+function getLocalStorage() {
+	try {
+		const storage = globalThis.localStorage;
+		return typeof storage?.getItem === "function" ? storage : null;
+	} catch {
+		return null;
+	}
+}
+function readStoredItem(key) {
+	try {
+		return getLocalStorage()?.getItem(key) ?? null;
+	} catch {
+		return null;
+	}
+}
+function writeStoredItem(key, value) {
+	try {
+		getLocalStorage()?.setItem(key, value);
+	} catch {}
+}
+function removeStoredItem(key) {
+	try {
+		getLocalStorage()?.removeItem(key);
+	} catch {}
+}
 var useAuthStore = defineStore("mint-auth", () => {
 	const token = ref(null);
 	const tokenExpires = ref(null);
@@ -215,23 +329,22 @@ var useAuthStore = defineStore("mint-auth", () => {
 	const needsAuth = computed(() => {
 		return authConfig.value.authRequired && !isAuthenticated.value;
 	});
-	const isAdmin = computed(() => {
-		return userInfo.value?.role === "admin";
-	});
+	const isAdmin = computed(() => isAdminUser(userInfo.value));
+	const userType = computed(() => getAccessAudience(userInfo.value));
+	const permissions = computed(() => getUserPermissions(userInfo.value));
+	const canAccessAdmin$1 = computed(() => canAccessAdmin(userInfo.value));
 	const canRegister = computed(() => {
 		return authConfig.value.registrationEnabled;
 	});
 	function initialize() {
-		if (hasLocalStorage) {
-			const storedToken = localStorage.getItem(AUTH_TOKEN_KEY);
-			const storedExpires = localStorage.getItem(AUTH_EXPIRES_KEY);
-			if (storedToken) {
-				token.value = storedToken;
-				if (storedExpires) {
-					const expires = new Date(storedExpires);
-					if (expires > /* @__PURE__ */ new Date()) tokenExpires.value = expires;
-					else clearToken();
-				}
+		const storedToken = readStoredItem(AUTH_TOKEN_KEY);
+		const storedExpires = readStoredItem(AUTH_EXPIRES_KEY);
+		if (storedToken) {
+			token.value = storedToken;
+			if (storedExpires) {
+				const expires = new Date(storedExpires);
+				if (expires > /* @__PURE__ */ new Date()) tokenExpires.value = expires;
+				else clearToken();
 			}
 		}
 		isInitialized.value = true;
@@ -240,25 +353,30 @@ var useAuthStore = defineStore("mint-auth", () => {
 		token.value = accessToken;
 		const expires = new Date(Date.now() + expiresIn * 1e3);
 		tokenExpires.value = expires;
-		if (hasLocalStorage) {
-			localStorage.setItem(AUTH_TOKEN_KEY, accessToken);
-			localStorage.setItem(AUTH_EXPIRES_KEY, expires.toISOString());
-		}
+		writeStoredItem(AUTH_TOKEN_KEY, accessToken);
+		writeStoredItem(AUTH_EXPIRES_KEY, expires.toISOString());
 	}
 	function clearToken() {
 		token.value = null;
 		tokenExpires.value = null;
 		username.value = null;
 		userInfo.value = null;
-		if (hasLocalStorage) {
-			localStorage.removeItem(AUTH_TOKEN_KEY);
-			localStorage.removeItem(AUTH_EXPIRES_KEY);
-		}
+		removeStoredItem(AUTH_TOKEN_KEY);
+		removeStoredItem(AUTH_EXPIRES_KEY);
 	}
 	function setUserInfo(info) {
 		userInfo.value = info;
 		username.value = info.username;
 	}
+	function hasPermission(...perms) {
+		return hasAllPermissions(userInfo.value, perms);
+	}
+	function hasAnyPermissionForUser(...perms) {
+		return hasAnyPermission(userInfo.value, perms);
+	}
+	function canAccessPlugin$1(pluginName) {
+		return canAccessPlugin(userInfo.value, pluginName);
+	}
 	function setAuthConfig(config) {
 		authConfig.value = config;
 	}
@@ -286,6 +404,9 @@ var useAuthStore = defineStore("mint-auth", () => {
 		isAuthenticated,
 		needsAuth,
 		isAdmin,
+		userType,
+		permissions,
+		canAccessAdmin: canAccessAdmin$1,
 		canRegister,
 		initialize,
 		setToken,
@@ -295,10 +416,13 @@ var useAuthStore = defineStore("mint-auth", () => {
 		setUserInfo,
 		setError,
 		setLoading,
+		hasPermission,
+		hasAnyPermission: hasAnyPermissionForUser,
+		canAccessPlugin: canAccessPlugin$1,
 		logout
 	};
 });
 //#endregion
-export { colorPalettes as n, useSettingsStore as r, useAuthStore as t };
+export { canAccessByPolicy as a, getRoleInfo as c, hasAnyPermission as d, isAdminRole as f, useSettingsStore as g, colorPalettes as h, canAccessAdmin as i, getUserPermissions as l, normalizeAccessPolicy as m, ADMIN_PANEL_PERMISSIONS as n, canAccessPlugin as o, isAdminUser as p, ADMIN_ROLE as r, getAccessAudience as s, useAuthStore as t, hasAllPermissions as u };
 
-//# sourceMappingURL=auth-QQj2kkze.js.map
+//# sourceMappingURL=auth-B7g4J4ZF.js.map

package/dist/auth-B7g4J4ZF.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"auth-B7g4J4ZF.js","names":[],"sources":["../src/stores/settings.ts","../src/permissions.ts","../src/stores/auth.ts"],"sourcesContent":["import { defineStore } from 'pinia'\nimport { ref, watch } from 'vue'\nimport type { ThemeMode, ColorPalette, TableDensity } from '../types'\n\ndeclare global {\n  interface ImportMetaEnv {\n    readonly VITE_API_PREFIX?: string\n  }\n\n  interface ImportMeta {\n    readonly env: ImportMetaEnv\n  }\n}\n\nexport interface SettingsState {\n  serverHost: string\n  serverPort: number\n  requestTimeout: number\n  wsAutoReconnect: boolean\n  wsReconnectInterval: number\n  theme: ThemeMode\n  colorPalette: ColorPalette\n  tableDensity: TableDensity\n}\n\nconst STORAGE_KEY = 'mint-settings'\nconst LEGACY_STORAGE_KEY = 'mld-settings'\n\nfunction getDefaultServerHost(): string {\n  if (typeof window !== 'undefined' && window.location.hostname !== 'localhost') {\n    return window.location.hostname\n  }\n  return 'localhost'\n}\n\nfunction getDefaultServerPort(): number {\n  if (typeof window !== 'undefined') {\n    if (window.location.port) {\n      return parseInt(window.location.port, 10)\n    }\n    // Standard ports: 443 for HTTPS, 80 for HTTP (browser omits from location.port)\n    return window.location.protocol === 'https:' ? 443 : 80\n  }\n  return 8000\n}\n\nconst defaultSettings: SettingsState = {\n  serverHost: getDefaultServerHost(),\n  serverPort: getDefaultServerPort(),\n  requestTimeout: 120000,\n  wsAutoReconnect: true,\n  wsReconnectInterval: 5000,\n  theme: 'system',\n  colorPalette: 'default',\n  tableDensity: 'normal',\n}\n\nexport const colorPalettes: Record<ColorPalette, { name: string; hues: [number, number] }> = {\n  default: { name: 'Default (Cyan-Pink)', hues: [180, 320] },\n  colorblind: { name: 'Colorblind-friendly', hues: [45, 260] },\n  viridis: { name: 'Viridis', hues: [280, 80] },\n  pastel: { name: 'Pastel', hues: [200, 340] },\n}\n\nfunction loadSettings(): SettingsState {\n  try {\n    const stored = localStorage.getItem(STORAGE_KEY)\n    if (stored) {\n      const parsed = JSON.parse(stored)\n      return { ...defaultSettings, ...parsed }\n    }\n\n    const legacyStored = localStorage.getItem(LEGACY_STORAGE_KEY)\n    if (legacyStored) {\n      const parsed = JSON.parse(legacyStored)\n      const migrated = { ...defaultSettings, ...parsed }\n      localStorage.setItem(STORAGE_KEY, JSON.stringify(migrated))\n      localStorage.removeItem(LEGACY_STORAGE_KEY)\n      return migrated\n    }\n  } catch (e) {\n    console.warn('Failed to load settings from localStorage:', e)\n  }\n  return { ...defaultSettings }\n}\n\nfunction saveSettings(settings: SettingsState): void {\n  try {\n    localStorage.setItem(STORAGE_KEY, JSON.stringify(settings))\n  } catch (e) {\n    console.warn('Failed to save settings to localStorage:', e)\n  }\n}\n\nfunction getSystemPrefersDark(): boolean {\n  if (typeof window === 'undefined' || typeof window.matchMedia !== 'function') return false\n  return window.matchMedia('(prefers-color-scheme: dark)').matches\n}\n\nexport const useSettingsStore = defineStore('mint-settings', () => {\n  // State\n  const serverHost = ref(defaultSettings.serverHost)\n  const serverPort = ref(defaultSettings.serverPort)\n  const requestTimeout = ref(defaultSettings.requestTimeout)\n  const wsAutoReconnect = ref(defaultSettings.wsAutoReconnect)\n  const wsReconnectInterval = ref(defaultSettings.wsReconnectInterval)\n  const theme = ref<ThemeMode>(defaultSettings.theme)\n  const systemPrefersDark = ref(getSystemPrefersDark())\n  const colorPalette = ref<ColorPalette>(defaultSettings.colorPalette)\n  const tableDensity = ref<TableDensity>(defaultSettings.tableDensity)\n\n  // API prefix - can be configured via env variable VITE_API_PREFIX\n  const apiPrefix: string = (import.meta.env?.VITE_API_PREFIX as string | undefined) ?? '/api'\n\n  function _isSameOrigin(): { same: boolean; currentHost: string; currentPort: string } {\n    const currentHost = typeof window !== 'undefined' ? window.location.hostname : 'localhost'\n    const currentPort = typeof window !== 'undefined' ? window.location.port : '8000'\n    const effectivePort = currentPort || (window.location.protocol === 'https:' ? '443' : '80')\n    const same =\n      (serverHost.value === currentHost && String(serverPort.value) === effectivePort) ||\n      (serverHost.value === 'localhost' && currentHost !== 'localhost')\n    return { same, currentHost, currentPort }\n  }\n\n  function getApiBaseUrl(): string {\n    const { same } = _isSameOrigin()\n    if (same) return apiPrefix\n    return `http://${serverHost.value}:${serverPort.value}${apiPrefix}`\n  }\n\n  function getWsBaseUrl(): string {\n    const { same, currentHost, currentPort } = _isSameOrigin()\n    const protocol = typeof window !== 'undefined' && window.location.protocol === 'https:' ? 'wss:' : 'ws:'\n    if (same) return `${protocol}//${currentHost}${currentPort ? ':' + currentPort : ''}${apiPrefix}`\n    return `ws://${serverHost.value}:${serverPort.value}${apiPrefix}`\n  }\n\n  let _initialized = false\n\n  function initialize() {\n    if (_initialized) return\n    _initialized = true\n\n    const loaded = loadSettings()\n    serverHost.value = loaded.serverHost\n    serverPort.value = loaded.serverPort\n    requestTimeout.value = loaded.requestTimeout\n    wsAutoReconnect.value = loaded.wsAutoReconnect\n    wsReconnectInterval.value = loaded.wsReconnectInterval\n    theme.value = loaded.theme\n    colorPalette.value = loaded.colorPalette\n    tableDensity.value = loaded.tableDensity\n\n    applyTheme()\n  }\n\n  function applyTheme() {\n    if (typeof document === 'undefined') return\n    const dark = theme.value === 'system' ? systemPrefersDark.value : theme.value === 'dark'\n    document.documentElement.classList.toggle('dark', dark)\n  }\n\n  watch(theme, () => {\n    applyTheme()\n    persistSettings()\n  })\n\n  if (typeof window !== 'undefined' && typeof window.matchMedia === 'function') {\n    window.matchMedia('(prefers-color-scheme: dark)').addEventListener('change', (event) => {\n      systemPrefersDark.value = event.matches\n      if (theme.value === 'system') {\n        applyTheme()\n      }\n    })\n  }\n\n  function persistSettings() {\n    saveSettings({\n      serverHost: serverHost.value,\n      serverPort: serverPort.value,\n      requestTimeout: requestTimeout.value,\n      wsAutoReconnect: wsAutoReconnect.value,\n      wsReconnectInterval: wsReconnectInterval.value,\n      theme: theme.value,\n      colorPalette: colorPalette.value,\n      tableDensity: tableDensity.value,\n    })\n  }\n\n  watch([serverHost, serverPort, requestTimeout, wsAutoReconnect, wsReconnectInterval, colorPalette, tableDensity], () => {\n    persistSettings()\n  })\n\n  function resetToDefaults() {\n    serverHost.value = defaultSettings.serverHost\n    serverPort.value = defaultSettings.serverPort\n    requestTimeout.value = defaultSettings.requestTimeout\n    wsAutoReconnect.value = defaultSettings.wsAutoReconnect\n    wsReconnectInterval.value = defaultSettings.wsReconnectInterval\n    theme.value = defaultSettings.theme\n    colorPalette.value = defaultSettings.colorPalette\n    tableDensity.value = defaultSettings.tableDensity\n  }\n\n  function getPaletteHues(): [number, number] {\n    return colorPalettes[colorPalette.value].hues\n  }\n\n  function isDark(): boolean {\n    return theme.value === 'system' ? systemPrefersDark.value : theme.value === 'dark'\n  }\n\n  return {\n    serverHost,\n    serverPort,\n    requestTimeout,\n    wsAutoReconnect,\n    wsReconnectInterval,\n    theme,\n    systemPrefersDark,\n    colorPalette,\n    tableDensity,\n    initialize,\n    applyTheme,\n    persistSettings,\n    resetToDefaults,\n    getPaletteHues,\n    isDark,\n    getApiBaseUrl,\n    getWsBaseUrl,\n  }\n})\n","export const ADMIN_ROLE = 'admin'\n\nexport const ADMIN_PANEL_PERMISSIONS = [\n  'users.view',\n  'users.invite',\n  'users.manage',\n  'platform.configure',\n  'platform.view_logs',\n  'plugins.configure',\n  'plugins.install',\n] as const\n\nexport type AccessAudience = 'all' | 'admin' | 'user'\nexport type AccessAudienceInput = AccessAudience | readonly AccessAudience[]\n\nexport interface RoleInfo {\n  id?: number\n  slug: string\n  name?: string\n  color?: string\n  permissions?: readonly string[] | null\n  project_scope?: 'all' | 'assigned' | string\n  plugin_access?: readonly string[] | 'all' | null\n}\n\nexport interface PermissionUser {\n  role?: string | null\n  role_obj?: RoleInfo | null\n  roleObj?: RoleInfo | null\n  permissions?: readonly string[] | null\n}\n\nexport interface AccessPolicy {\n  audience?: AccessAudienceInput\n  visibleFor?: AccessAudienceInput\n  requiresAuth?: boolean\n  requiresAdmin?: boolean\n  permissions?: readonly string[]\n  anyPermissions?: readonly string[]\n  plugin?: string\n}\n\nexport interface AccessControlled {\n  access?: AccessPolicy\n  visibleFor?: AccessAudienceInput\n  requiresAdmin?: boolean\n  permissions?: readonly string[]\n  anyPermissions?: readonly string[]\n}\n\nexport function getRoleInfo(user: PermissionUser | null | undefined): RoleInfo | null {\n  return user?.roleObj ?? user?.role_obj ?? null\n}\n\nexport function isAdminRole(role: string | null | undefined): boolean {\n  return role === ADMIN_ROLE\n}\n\nexport function isAdminUser(user: PermissionUser | null | undefined): boolean {\n  return isAdminRole(user?.role) || getRoleInfo(user)?.slug === ADMIN_ROLE\n}\n\nexport function getAccessAudience(user: PermissionUser | null | undefined): Exclude<AccessAudience, 'all'> {\n  return isAdminUser(user) ? 'admin' : 'user'\n}\n\nexport function getUserPermissions(user: PermissionUser | null | undefined): string[] {\n  const rolePermissions = getRoleInfo(user)?.permissions\n  if (rolePermissions?.length) return [...rolePermissions]\n  return [...(user?.permissions ?? [])]\n}\n\nexport function hasAllPermissions(\n  user: PermissionUser | null | undefined,\n  permissions: readonly string[] = [],\n): boolean {\n  if (permissions.length === 0) return true\n  if (isAdminUser(user)) return true\n  const granted = new Set(getUserPermissions(user))\n  return permissions.every(permission => granted.has(permission))\n}\n\nexport function hasAnyPermission(\n  user: PermissionUser | null | undefined,\n  permissions: readonly string[] = [],\n): boolean {\n  if (permissions.length === 0) return true\n  if (isAdminUser(user)) return true\n  const granted = new Set(getUserPermissions(user))\n  return permissions.some(permission => granted.has(permission))\n}\n\nexport function canAccessAdmin(user: PermissionUser | null | undefined): boolean {\n  return isAdminUser(user) || hasAnyPermission(user, ADMIN_PANEL_PERMISSIONS)\n}\n\nexport function canAccessPlugin(\n  user: PermissionUser | null | undefined,\n  pluginName: string | null | undefined,\n): boolean {\n  if (!pluginName) return true\n  const access = getRoleInfo(user)?.plugin_access\n  if (!access || access === 'all') return true\n  return Array.isArray(access) && access.includes(pluginName)\n}\n\nexport function normalizeAccessPolicy(rule: AccessControlled | AccessPolicy | undefined): AccessPolicy {\n  if (!rule) return {}\n  const { access: nested, ...direct } = rule as AccessPolicy & { access?: AccessPolicy }\n  return {\n    ...(nested ?? {}),\n    ...direct,\n    ...('visibleFor' in rule && rule.visibleFor !== undefined ? { visibleFor: rule.visibleFor } : {}),\n    ...('requiresAdmin' in rule && rule.requiresAdmin !== undefined ? { requiresAdmin: rule.requiresAdmin } : {}),\n    ...('permissions' in rule && rule.permissions !== undefined ? { permissions: rule.permissions } : {}),\n    ...('anyPermissions' in rule && rule.anyPermissions !== undefined ? { anyPermissions: rule.anyPermissions } : {}),\n  }\n}\n\nexport function canAccessByPolicy(\n  user: PermissionUser | null | undefined,\n  rule: AccessControlled | AccessPolicy | undefined,\n  isAuthenticated = user !== null && user !== undefined,\n): boolean {\n  const policy = normalizeAccessPolicy(rule)\n  if (policy.requiresAuth && !isAuthenticated) return false\n  if (policy.requiresAdmin && !isAdminUser(user)) return false\n  if (!audienceAllowsUser(policy.visibleFor ?? policy.audience, user)) return false\n  if (!hasAllPermissions(user, policy.permissions)) return false\n  if (!hasAnyPermission(user, policy.anyPermissions)) return false\n  if (policy.plugin && !canAccessPlugin(user, policy.plugin)) return false\n  return true\n}\n\nfunction audienceAllowsUser(\n  audience: AccessAudienceInput | undefined,\n  user: PermissionUser | null | undefined,\n): boolean {\n  if (audience === undefined) return true\n  const allowed = Array.isArray(audience) ? audience : [audience]\n  if (allowed.includes('all')) return true\n  return allowed.includes(getAccessAudience(user))\n}\n","import { defineStore } from 'pinia'\nimport { ref, computed } from 'vue'\nimport type { AuthConfig, UserInfo } from '../types'\nimport {\n  canAccessAdmin as canUserAccessAdmin,\n  canAccessPlugin as canUserAccessPlugin,\n  getAccessAudience,\n  getUserPermissions,\n  hasAllPermissions,\n  hasAnyPermission,\n  isAdminUser,\n} from '../permissions'\n\nconst AUTH_TOKEN_KEY = 'mint-auth-token'\nconst AUTH_EXPIRES_KEY = 'mint-auth-expires'\n\nfunction getLocalStorage(): Storage | null {\n  try {\n    const storage = globalThis.localStorage\n    return typeof storage?.getItem === 'function' ? storage : null\n  } catch {\n    return null\n  }\n}\n\nfunction readStoredItem(key: string): string | null {\n  try {\n    return getLocalStorage()?.getItem(key) ?? null\n  } catch {\n    return null\n  }\n}\n\nfunction writeStoredItem(key: string, value: string): void {\n  try {\n    getLocalStorage()?.setItem(key, value)\n  } catch {\n    // Keep auth usable in-memory when browser storage is blocked.\n  }\n}\n\nfunction removeStoredItem(key: string): void {\n  try {\n    getLocalStorage()?.removeItem(key)\n  } catch {\n    // Keep auth cleanup usable in-memory when browser storage is blocked.\n  }\n}\n\nexport const useAuthStore = defineStore('mint-auth', () => {\n  // State\n  const token = ref<string | null>(null)\n  const tokenExpires = ref<Date | null>(null)\n  const username = ref<string | null>(null)\n  const userInfo = ref<UserInfo | null>(null)\n  const authConfig = ref<AuthConfig>({\n    authRequired: true,\n    passkeyEnabled: false,\n    passkeyRegistered: false,\n    registrationEnabled: false,\n    databaseMode: 'none',\n  })\n  const isInitialized = ref(false)\n  const isLoading = ref(false)\n  const error = ref<string | null>(null)\n\n  // Computed\n  const isAuthenticated = computed(() => {\n    if (!authConfig.value.authRequired) {\n      return true\n    }\n    if (!token.value) {\n      return false\n    }\n    if (tokenExpires.value && tokenExpires.value < new Date()) {\n      return false\n    }\n    return true\n  })\n\n  const needsAuth = computed(() => {\n    return authConfig.value.authRequired && !isAuthenticated.value\n  })\n\n  const isAdmin = computed(() => isAdminUser(userInfo.value))\n  const userType = computed(() => getAccessAudience(userInfo.value))\n  const permissions = computed(() => getUserPermissions(userInfo.value))\n  const canAccessAdmin = computed(() => canUserAccessAdmin(userInfo.value))\n\n  const canRegister = computed(() => {\n    return authConfig.value.registrationEnabled\n  })\n\n  // Actions\n  function initialize() {\n    const storedToken = readStoredItem(AUTH_TOKEN_KEY)\n    const storedExpires = readStoredItem(AUTH_EXPIRES_KEY)\n\n    if (storedToken) {\n      token.value = storedToken\n\n      if (storedExpires) {\n        const expires = new Date(storedExpires)\n        if (expires > new Date()) {\n          tokenExpires.value = expires\n        } else {\n          clearToken()\n        }\n      }\n    }\n\n    isInitialized.value = true\n  }\n\n  function setToken(accessToken: string, expiresIn: number) {\n    token.value = accessToken\n    const expires = new Date(Date.now() + expiresIn * 1000)\n    tokenExpires.value = expires\n\n    writeStoredItem(AUTH_TOKEN_KEY, accessToken)\n    writeStoredItem(AUTH_EXPIRES_KEY, expires.toISOString())\n  }\n\n  function clearToken() {\n    token.value = null\n    tokenExpires.value = null\n    username.value = null\n    userInfo.value = null\n\n    removeStoredItem(AUTH_TOKEN_KEY)\n    removeStoredItem(AUTH_EXPIRES_KEY)\n  }\n\n  function setUserInfo(info: UserInfo) {\n    userInfo.value = info\n    username.value = info.username\n  }\n\n  function hasPermission(...perms: string[]): boolean {\n    return hasAllPermissions(userInfo.value, perms)\n  }\n\n  function hasAnyPermissionForUser(...perms: string[]): boolean {\n    return hasAnyPermission(userInfo.value, perms)\n  }\n\n  function canAccessPlugin(pluginName: string): boolean {\n    return canUserAccessPlugin(userInfo.value, pluginName)\n  }\n\n  function setAuthConfig(config: AuthConfig) {\n    authConfig.value = config\n  }\n\n  function setUsername(name: string) {\n    username.value = name\n  }\n\n  function setError(message: string | null) {\n    error.value = message\n  }\n\n  function setLoading(loading: boolean) {\n    isLoading.value = loading\n  }\n\n  function logout() {\n    clearToken()\n  }\n\n  return {\n    // State\n    token,\n    tokenExpires,\n    username,\n    userInfo,\n    authConfig,\n    isInitialized,\n    isLoading,\n    error,\n\n    // Computed\n    isAuthenticated,\n    needsAuth,\n    isAdmin,\n    userType,\n    permissions,\n    canAccessAdmin,\n    canRegister,\n\n    // Actions\n    initialize,\n    setToken,\n    clearToken,\n    setAuthConfig,\n    setUsername,\n    setUserInfo,\n    setError,\n    setLoading,\n    hasPermission,\n    hasAnyPermission: hasAnyPermissionForUser,\n    canAccessPlugin,\n    logout,\n  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package/dist/components/AutoGroupModal.vue.d.ts

@@ -16,8 +16,8 @@ declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, imp
     onApply?: ((result: AutoGroupResult) => any) | undefined;
 }>, {
     samples: string[];
-    experimentId: number;
     designData: Record<string, unknown>;
+    experimentId: number;
 }, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {
     wizardRef: ({
         $: import('vue').ComponentInternalInstance;

package/dist/components/BaseCheckbox.vue.d.ts

@@ -11,7 +11,7 @@ declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, imp
     "onUpdate:modelValue"?: ((value: boolean) => any) | undefined;
 }>, {
     size: "sm" | "md" | "lg";
-    modelValue: boolean;
     disabled: boolean;
+    modelValue: boolean;
 }, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLLabelElement>;
 export default _default;

package/dist/components/BaseToggle.vue.d.ts

@@ -11,9 +11,9 @@ declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, imp
 }, string, import('vue').PublicProps, Readonly<Props> & Readonly<{
     "onUpdate:modelValue"?: ((value: boolean) => any) | undefined;
 }>, {
-    size: "sm" | "md" | "lg";
     reverse: boolean;
-    modelValue: boolean;
+    size: "sm" | "md" | "lg";
     disabled: boolean;
+    modelValue: boolean;
 }, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLDivElement>;
 export default _default;

package/dist/components/BioTemplateExperimentWorkspaceView.vue.d.ts

@@ -96,8 +96,8 @@ declare const __VLS_component: import('vue').DefineComponent<Props, {}, {}, {},
     error: string | null;
     message: string;
     status: TemplateWorkspaceStatus;
-    loading: boolean;
     actions: TemplateWorkspaceActions;
+    loading: boolean;
     dense: boolean;
     currentExperimentId: number;
     kind: WorkspaceKind;

package/dist/components/BioTemplatePackWorkspaceView.vue.d.ts

@@ -69,8 +69,8 @@ declare function __VLS_template(): {
 };
 type __VLS_TemplateResult = ReturnType<typeof __VLS_template>;
 declare const __VLS_component: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<Props> & Readonly<{}>, {
-    readonly: boolean;
     label: string;
+    readonly: boolean;
     message: string;
     status: PackWorkspaceStatus;
     actions: PackWorkspaceActions;

package/dist/components/BioTemplatePresetWorkspaceView.vue.d.ts

@@ -63,8 +63,8 @@ declare const __VLS_component: import('vue').DefineComponent<Props, {}, {}, {},
     "onUpdate:values"?: ((values: BioTemplateControlValues) => any) | undefined;
 }>, {
     values: BioTemplateControlValues;
-    modelValue: BioTemplateControlValues;
     readonly: boolean;
+    modelValue: BioTemplateControlValues;
     initialValues: BioTemplateControlValues;
     dense: boolean;
     sidebarWidth: string;

package/dist/components/DoseDesignWorkspaceView.vue.d.ts

@@ -133,9 +133,9 @@ declare const __VLS_component: import('vue').DefineComponent<Props, {}, {}, {},
     sidebarSubtitle: string;
     sidebarBadge: string | number;
     sidebarVariant: DoseDesignSidebarVariant;
+    plateId: string;
     workspace: UseControlWorkspaceReturn<ControlSchema>;
     doseDesignOptions: DoseDesignControlModelOptions;
-    plateId: string;
     doseId: string;
     wellPlateProps: ComponentProps;
     doseCalculatorProps: ComponentProps;

package/dist/components/FormulaInput.vue.d.ts

@@ -15,9 +15,9 @@ declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, imp
     onMw?: ((mw: number | null) => any) | undefined;
 }>, {
     size: "sm" | "md" | "lg";
-    modelValue: string;
     placeholder: string;
     disabled: boolean;
+    modelValue: string;
     error: boolean;
     showPreview: boolean;
     showMW: boolean;

package/dist/components/InstrumentAlertLog.vue.d.ts

@@ -0,0 +1,22 @@
+import { InstrumentAlert } from '../types';
+interface Props {
+    alerts?: InstrumentAlert[];
+    title?: string;
+    acknowledgeable?: boolean;
+    emptyMessage?: string;
+    filteredEmptyMessage?: string;
+    locale?: string;
+}
+declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {
+    acknowledge: (alert: InstrumentAlert) => any;
+}, string, import('vue').PublicProps, Readonly<Props> & Readonly<{
+    onAcknowledge?: ((alert: InstrumentAlert) => any) | undefined;
+}>, {
+    title: string;
+    locale: string;
+    emptyMessage: string;
+    alerts: InstrumentAlert[];
+    acknowledgeable: boolean;
+    filteredEmptyMessage: string;
+}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLDivElement>;
+export default _default;

package/dist/components/InstrumentStateBadge.vue.d.ts

@@ -0,0 +1,11 @@
+import { InstrumentState } from '../types';
+interface Props {
+    state: InstrumentState | string;
+    label?: string;
+    pulseWhenRunning?: boolean;
+}
+declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<Props> & Readonly<{}>, {
+    label: string;
+    pulseWhenRunning: boolean;
+}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLSpanElement>;
+export default _default;

package/dist/components/InstrumentStatusCard.vue.d.ts

@@ -0,0 +1,13 @@
+import { InstrumentStatus } from '../types';
+interface Props {
+    status: InstrumentStatus;
+    name?: string;
+    showPlaceholders?: boolean;
+    locale?: string;
+}
+declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<Props> & Readonly<{}>, {
+    name: string;
+    locale: string;
+    showPlaceholders: boolean;
+}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLDivElement>;
+export default _default;

package/dist/components/LcmsSequenceTable.vue.d.ts

@@ -0,0 +1,26 @@
+import { LcmsSequenceItem, LcmsSequenceTableColumn } from '../lcms';
+interface Props {
+    items?: LcmsSequenceItem[];
+    columns?: LcmsSequenceTableColumn[];
+    editable?: boolean;
+    maxRows?: number;
+    showMoreLabel?: boolean;
+    emptyMessage?: string;
+}
+declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {
+    remove: (index: number) => any;
+    reorder: (fromIndex: number, toIndex: number) => any;
+    duplicate: (index: number) => any;
+}, string, import('vue').PublicProps, Readonly<Props> & Readonly<{
+    onRemove?: ((index: number) => any) | undefined;
+    onReorder?: ((fromIndex: number, toIndex: number) => any) | undefined;
+    onDuplicate?: ((index: number) => any) | undefined;
+}>, {
+    items: LcmsSequenceItem[];
+    columns: LcmsSequenceTableColumn[];
+    editable: boolean;
+    emptyMessage: string;
+    maxRows: number;
+    showMoreLabel: boolean;
+}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLDivElement>;
+export default _default;

package/dist/components/ProgressBar.vue.d.ts

@@ -8,6 +8,7 @@ interface Props {
     indeterminate?: boolean;
     steps?: string[];
     currentStep?: number;
+    ariaLabel?: string;
 }
 declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<Props> & Readonly<{}>, {
     size: "sm" | "md" | "lg";

package/dist/components/RackEditor.vue.d.ts

@@ -1,4 +1,4 @@
-import { Rack, WellPlateSize, WellEditData } from '../types';
+import { Rack, WellPlateSize, WellEditData, Well, WellEditField, WellSampleDropData, RackSampleDropMapper } from '../types';
 interface Props {
     modelValue?: Rack[];
     activeRackId?: string;
@@ -10,10 +10,39 @@ interface Props {
     wellPlateSize?: WellPlateSize;
     showLegend?: boolean;
     showBadges?: boolean;
+    allowSampleDrop?: boolean;
+    sampleDropMapper?: RackSampleDropMapper;
 }
-declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {
+interface RackWellEditorSlotProps {
+    rack?: Rack;
+    rackId: string;
+    wellId: string;
+    wellData?: Partial<Well>;
+    editFields: WellEditField[];
+    defaultInjectionVolume: number;
+    position: {
+        x: number;
+        y: number;
+    };
+    save: (data: WellEditData) => void;
+    clear: () => void;
+    close: () => void;
+}
+declare function __VLS_template(): {
+    attrs: Partial<{}>;
+    slots: Readonly<{
+        'well-editor'?: (props: RackWellEditorSlotProps) => unknown;
+    }> & {
+        'well-editor'?: (props: RackWellEditorSlotProps) => unknown;
+    };
+    refs: {};
+    rootEl: HTMLDivElement;
+};
+type __VLS_TemplateResult = ReturnType<typeof __VLS_template>;
+declare const __VLS_component: import('vue').DefineComponent<Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {
     "update:modelValue": (racks: Rack[]) => any;
     "well-edit": (rackId: string, wellId: string, data: WellEditData) => any;
+    "sample-drop": (rackId: string, wellId: string, data: WellSampleDropData, event: DragEvent) => any;
     "update:activeRackId": (rackId: string) => any;
     "rack-add": (rack: Rack) => any;
     "rack-remove": (rackId: string) => any;
@@ -21,20 +50,29 @@ declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, imp
 }, string, import('vue').PublicProps, Readonly<Props> & Readonly<{
     "onUpdate:modelValue"?: ((racks: Rack[]) => any) | undefined;
     "onWell-edit"?: ((rackId: string, wellId: string, data: WellEditData) => any) | undefined;
+    "onSample-drop"?: ((rackId: string, wellId: string, data: WellSampleDropData, event: DragEvent) => any) | undefined;
     "onUpdate:activeRackId"?: ((rackId: string) => any) | undefined;
     "onRack-add"?: ((rack: Rack) => any) | undefined;
     "onRack-remove"?: ((rackId: string) => any) | undefined;
     "onRack-reorder"?: ((rackIds: string[]) => any) | undefined;
 }>, {
-    modelValue: Rack[];
     readonly: boolean;
+    modelValue: Rack[];
     showLegend: boolean;
     editable: boolean;
     showBadges: boolean;
+    allowSampleDrop: boolean;
     activeRackId: string;
     maxRacks: number;
     minRacks: number;
     allowReorder: boolean;
     wellPlateSize: WellPlateSize;
+    sampleDropMapper: RackSampleDropMapper;
 }, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLDivElement>;
+declare const _default: __VLS_WithTemplateSlots<typeof __VLS_component, __VLS_TemplateResult["slots"]>;
 export default _default;
+type __VLS_WithTemplateSlots<T, S> = T & {
+    new (): {
+        $slots: S;
+    };
+};

package/dist/components/ReagentList.vue.d.ts

@@ -21,8 +21,8 @@ declare const _default: import('vue').DefineComponent<Props, {}, {}, {}, {}, imp
     onEdit?: ((reagent: Reagent) => any) | undefined;
     onReorder?: ((reagentId: string, fromIndex: number, toIndex: number) => any) | undefined;
 }>, {
-    modelValue: Reagent[];
     readonly: boolean;
+    modelValue: Reagent[];
     columns: ReagentColumn[];
     sortable: boolean;
     searchable: boolean;