@monoes/monomindcli 2.9.22 → 2.9.23

package/dist/src/mcp-tools/transfer-tools.d.ts

@@ -1,20 +1,16 @@
 /**
  * Transfer MCP Tools
  *
- * Only the PII scanner remains. The IPFS pattern-marketplace tools that used to
- * live here (`transfer_ipfs-resolve`, `transfer_store-search`, `-info`,
- * `-download`, `-featured`, `-trending`) were deleted along with the ~4,600-line
- * `src/transfer/{store,ipfs,storage,models,serialization}` subtree they wrapped.
- *
- * They were unreachable three ways over: gated out of the default MCP surface,
- * exposed on a CLI path the dispatcher cannot reach (`hooks transfer store …`
- * is four levels deep; the dispatcher handles three), and pointed at a registry
- * whose bootstrap config carried the placeholder `publicKey:
- * 'ed25519:monomind-registry-key'` rather than a real key.
+ * Only the PII scanner remains. A larger set of pattern-sharing tools
+ * that used to live here was deleted along with the ~4,600-line subtree they
+ * wrapped: they were unreachable three ways over — gated out of the default
+ * MCP surface, exposed on a CLI path the dispatcher cannot reach (four levels
+ * deep; the dispatcher handles three), and pointed at a registry whose
+ * bootstrap config carried a placeholder public key rather than a real one.
  *
  * `transfer_detect-pii` is unrelated to all of that — it is a real regex PII
- * scanner over `src/transfer/anonymization/`, which has no store or IPFS
- * dependency, and it stays visible by default.
+ * scanner over `src/transfer/anonymization/`, which has no dependency on the
+ * deleted subtree, and it stays visible by default.
  *
  * @module @monomind/cli/mcp-tools/transfer-tools
  * @version 4.0.0

package/dist/src/mcp-tools/transfer-tools.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"transfer-tools.d.ts","sourceRoot":"","sources":["../../../src/mcp-tools/transfer-tools.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;GAgBG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAiB,MAAM,YAAY,CAAC;AAiBzD,+EAA+E;AAC/E,eAAO,MAAM,gBAAgB,EAAE,OAAO,EAgCrC,CAAC;AAKF,eAAO,MAAM,aAAa,EAAE,OAAO,EAAqB,CAAC;eAE1C,aAAa"}

package/dist/src/mcp-tools/transfer-tools.js

@@ -1,20 +1,16 @@
 /**
  * Transfer MCP Tools
  *
- * Only the PII scanner remains. The IPFS pattern-marketplace tools that used to
- * live here (`transfer_ipfs-resolve`, `transfer_store-search`, `-info`,
- * `-download`, `-featured`, `-trending`) were deleted along with the ~4,600-line
- * `src/transfer/{store,ipfs,storage,models,serialization}` subtree they wrapped.
- *
- * They were unreachable three ways over: gated out of the default MCP surface,
- * exposed on a CLI path the dispatcher cannot reach (`hooks transfer store …`
- * is four levels deep; the dispatcher handles three), and pointed at a registry
- * whose bootstrap config carried the placeholder `publicKey:
- * 'ed25519:monomind-registry-key'` rather than a real key.
+ * Only the PII scanner remains. A larger set of pattern-sharing tools
+ * that used to live here was deleted along with the ~4,600-line subtree they
+ * wrapped: they were unreachable three ways over — gated out of the default
+ * MCP surface, exposed on a CLI path the dispatcher cannot reach (four levels
+ * deep; the dispatcher handles three), and pointed at a registry whose
+ * bootstrap config carried a placeholder public key rather than a real one.
  *
  * `transfer_detect-pii` is unrelated to all of that — it is a real regex PII
- * scanner over `src/transfer/anonymization/`, which has no store or IPFS
- * dependency, and it stays visible by default.
+ * scanner over `src/transfer/anonymization/`, which has no dependency on the
+ * deleted subtree, and it stays visible by default.
  *
  * @module @monomind/cli/mcp-tools/transfer-tools
  * @version 4.0.0
@@ -68,7 +64,7 @@ export const allTransferTools = [
         },
     },
 ];
-// Nothing here is gated any more — the speculative IPFS tools this flag used to
+// Nothing here is gated any more — the speculative tools this flag used to
 // hide have been deleted outright. The export shape is kept so callers and the
 // category loader continue to work unchanged.
 export const transferTools = allTransferTools;

package/dist/src/mcp-tools/transfer-tools.js.map

@@ -1 +1 @@
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package/dist/src/memory/embedding-operations.d.ts.map

@@ -1 +1 @@
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package/dist/src/memory/embedding-operations.js

@@ -165,43 +165,6 @@ export async function loadEmbeddingModel(options) {
                 }
             }
         }
-        // Fallback: Check for monovector ONNX embedder (bundled MiniLM-L6-v2 since v0.2.15)
-        // v0.2.16: LoRA B=0 fix makes AdaptiveEmbedder safe (identity when untrained)
-        // Note: isReady() returns false until first embed() call (lazy init), so we
-        // skip the isReady() gate and verify with a probe embed instead.
-        const monovector = await import('monovector').catch(() => null);
-        if (monovector?.initOnnxEmbedder) {
-            try {
-                await monovector.initOnnxEmbedder();
-                // Fallback: OptimizedOnnxEmbedder (raw ONNX, lazy-inits on first embed)
-                const onnxEmb = monovector.getOptimizedOnnxEmbedder?.();
-                if (onnxEmb?.embed) {
-                    // Probe embed to trigger lazy ONNX init and verify it works
-                    const probe = await onnxEmb.embed('test');
-                    const probeArr = ArrayBuffer.isView(probe) ? Array.from(probe) : (Array.isArray(probe) ? probe : []);
-                    if (probe && probe.length > 0 && probeArr.some((v) => v !== 0)) {
-                        if (verbose) {
-                            console.log(`Loading monovector ONNX embedder (all-MiniLM-L6-v2, ${probe.length}d)...`);
-                        }
-                        embeddingModelState = {
-                            loaded: true,
-                            model: (text) => onnxEmb.embed(text),
-                            tokenizer: null,
-                            dimensions: probe.length || 384
-                        };
-                        return {
-                            success: true,
-                            dimensions: probe.length || 384,
-                            modelName: 'monovector/onnx',
-                            loadTime: Date.now() - startTime
-                        };
-                    }
-                }
-            }
-            catch {
-                // monovector ONNX init failed, continue to next fallback
-            }
-        }
         // No ONNX model available - use fallback
         embeddingModelState = {
             loaded: true,

package/dist/src/memory/embedding-operations.js.map

@@ -1 +1 @@
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package/dist/src/memory/hnsw-operations.d.ts

@@ -1,79 +1,19 @@
 /**
- * HNSW Operations + INT8 Quantization + Flash Attention
+ * INT8 Quantization + batched cosine similarity search
  * Extracted from memory-initializer.ts (ARCH-4)
  *
+ * The HNSW ANN index itself now lives inside @monoes/memory's
+ * SqlBackend.search() (size-gated, built from the real memory_embeddings
+ * table, persisted to disk next to the SQLite file) — see
+ * memory-bridge.ts's bridgeGetHNSWStatus()/bridgeForceBuildHNSW(). This file
+ * used to also maintain a second, separate pure-JS HNSW index reaching
+ * directly into a `.swarm/memory.db` that nothing writes to post-rename;
+ * that layer queried the wrong database with the wrong schema and was
+ * removed rather than fixed in place, since the real search path already
+ * covers the same need at the correct layer.
+ *
  * @module v1/cli/hnsw-operations
  */
-interface HNSWEntry {
-    id: string;
-    key: string;
-    namespace: string;
-    content: string;
-}
-/** Minimal shape of the real @monoes/memory HNSWIndex class relied on here. */
-interface RealHNSWIndex {
-    addPoint(id: string, vector: Float32Array): Promise<void>;
-    search(query: Float32Array, k: number, ef?: number): Promise<Array<{
-        id: string;
-        distance: number;
-    }>>;
-    rebuild(entries: Array<{
-        id: string;
-        vector: Float32Array;
-    }>): Promise<void>;
-}
-interface HNSWIndex {
-    instance: RealHNSWIndex;
-    entries: Map<string, HNSWEntry>;
-    dimensions: number;
-    initialized: boolean;
-}
-/**
- * Get or create the HNSW index singleton
- * Lazily initializes from SQLite data on first use
- */
-export declare function getHNSWIndex(options?: {
-    dbPath?: string;
-    dimensions?: number;
-    forceRebuild?: boolean;
-}): Promise<HNSWIndex | null>;
-/**
- * Add entry to HNSW index (with automatic persistence)
- */
-export declare function addToHNSWIndex(id: string, embedding: number[], entry: HNSWEntry): Promise<boolean>;
-/**
- * Search HNSW index (0 faster than brute-force)
- * Returns results sorted by similarity (highest first)
- */
-export declare function searchHNSWIndex(queryEmbedding: number[], options?: {
-    k?: number;
-    namespace?: string;
-}): Promise<Array<{
-    id: string;
-    key: string;
-    content: string;
-    score: number;
-    namespace: string;
-}> | null>;
-/**
- * Get HNSW index status
- */
-export declare function getHNSWStatus(): {
-    available: boolean;
-    initialized: boolean;
-    entryCount: number;
-    dimensions: number;
-};
-/**
- * Clear the HNSW index (for rebuilding)
- */
-export declare function clearHNSWIndex(): void;
-/**
- * Invalidate the in-memory HNSW cache so the next search rebuilds from DB.
- * Call this after deleting entries that had embeddings to prevent ghost
- * vectors from appearing in search results.
- */
-export declare function rebuildSearchIndex(): void;
 /**
  * Quantize a Float32 embedding to Int8 (4x memory reduction)
  * Uses symmetric quantization with scale factor stored per-vector
@@ -125,9 +65,10 @@ export declare function softmaxAttention(scores: Float32Array, temperature?: num
  */
 export declare function topKIndices(scores: Float32Array, k: number): number[];
 /**
- * Flash Attention-style search
+ * Batched cosine similarity search with softmax-weighted scoring.
  * Combines batch similarity, softmax, and top-k in one pass.
- * Returns indices and attention weights.
+ * Returns indices and normalized weights (not a Flash Attention kernel —
+ * see the module-level note above).
  */
 export declare function flashAttentionSearch(query: Float32Array | number[], vectors: (Float32Array | number[])[], options?: {
     k?: number;
@@ -138,5 +79,4 @@ export declare function flashAttentionSearch(query: Float32Array | number[], vec
     scores: Float32Array;
     weights: Float32Array;
 };
-export {};
 //# sourceMappingURL=hnsw-operations.d.ts.map

package/dist/src/memory/hnsw-operations.d.ts.map

@@ -1 +1 @@
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package/dist/src/memory/hnsw-operations.js

@@ -1,267 +1,19 @@
 /**
- * HNSW Operations + INT8 Quantization + Flash Attention
+ * INT8 Quantization + batched cosine similarity search
  * Extracted from memory-initializer.ts (ARCH-4)
  *
+ * The HNSW ANN index itself now lives inside @monoes/memory's
+ * SqlBackend.search() (size-gated, built from the real memory_embeddings
+ * table, persisted to disk next to the SQLite file) — see
+ * memory-bridge.ts's bridgeGetHNSWStatus()/bridgeForceBuildHNSW(). This file
+ * used to also maintain a second, separate pure-JS HNSW index reaching
+ * directly into a `.swarm/memory.db` that nothing writes to post-rename;
+ * that layer queried the wrong database with the wrong schema and was
+ * removed rather than fixed in place, since the real search path already
+ * covers the same need at the correct layer.
+ *
  * @module v1/cli/hnsw-operations
  */
-import * as fs from 'fs';
-import * as path from 'path';
-import { BRIDGE_EMBEDDING_DIMS } from './memory-bridge.js';
-// ADR-053: Lazy import of SQLite-backed memory bridge
-let _bridge;
-async function getBridge() {
-    if (_bridge === null)
-        return null;
-    if (_bridge)
-        return _bridge;
-    try {
-        _bridge = await import('./memory-bridge.js');
-        return _bridge;
-    }
-    catch {
-        _bridge = null;
-        return null;
-    }
-}
-let hnswIndex = null;
-let hnswInitializing = false;
-/** Lazily import the pure-JS HNSWIndex class from the optional @monoes/memory package. */
-async function loadHNSWIndexClass() {
-    try {
-        const mod = await import('@monoes/memory');
-        return mod?.HNSWIndex ?? null;
-    }
-    catch {
-        return null;
-    }
-}
-/** Read entries with parseable embeddings of the expected dimension from SQLite. */
-async function loadEntriesFromDb(dbPath, dimensions) {
-    if (!fs.existsSync(dbPath))
-        return [];
-    const { safeParseEmbedding } = await import('./memory-bridge.js');
-    const results = [];
-    // Prefer better-sqlite3 (mmap-backed, doesn't load full DB into memory)
-    try {
-        const Database = (await import('better-sqlite3')).default;
-        const db = new Database(dbPath, { readonly: true });
-        try {
-            const rows = db.prepare(`SELECT id, key, namespace, content, embedding FROM memory_entries WHERE status = 'active' AND embedding IS NOT NULL ORDER BY rowid DESC LIMIT 10000`).all();
-            for (const row of rows) {
-                const parsed = safeParseEmbedding(row.embedding);
-                if (!parsed || parsed.length !== dimensions)
-                    continue;
-                results.push({
-                    id: row.id,
-                    vector: new Float32Array(parsed),
-                    entry: { id: row.id, key: row.key || row.id, namespace: row.namespace || 'default', content: row.content || '' },
-                });
-            }
-        }
-        finally {
-            db.close();
-        }
-        return results;
-    }
-    catch {
-        // better-sqlite3 native binding unavailable — fall back to sql.js (WASM)
-    }
-    try {
-        const initSqlJs = (await import('sql.js')).default;
-        const SQL = await initSqlJs();
-        const fileBuffer = fs.readFileSync(dbPath);
-        const db = new SQL.Database(fileBuffer);
-        try {
-            const stmt = db.prepare(`SELECT id, key, namespace, content, embedding FROM memory_entries WHERE status = 'active' AND embedding IS NOT NULL ORDER BY rowid DESC LIMIT 10000`);
-            while (stmt.step()) {
-                const [id, key, namespace, content, embeddingJson] = stmt.get();
-                const parsed = safeParseEmbedding(embeddingJson);
-                if (!parsed || parsed.length !== dimensions)
-                    continue;
-                results.push({
-                    id,
-                    vector: new Float32Array(parsed),
-                    entry: { id, key: key || id, namespace: namespace || 'default', content: content || '' },
-                });
-            }
-            stmt.free();
-        }
-        finally {
-            db.close();
-        }
-    }
-    catch {
-        // Neither SQLite driver available
-    }
-    return results;
-}
-/**
- * Get or create the HNSW index singleton
- * Lazily initializes from SQLite data on first use
- */
-export async function getHNSWIndex(options) {
-    const dimensions = options?.dimensions ?? BRIDGE_EMBEDDING_DIMS;
-    // Return existing index if already initialized for the same dimensionality.
-    // A cached index built for a different embedding size must be rebuilt —
-    // otherwise addPoint()/search() silently fail (or corrupt) on the mismatch.
-    if (hnswIndex?.initialized && hnswIndex.dimensions === dimensions && !options?.forceRebuild) {
-        return hnswIndex;
-    }
-    // Prevent concurrent initialization
-    if (hnswInitializing) {
-        // Wait for initialization to complete (max 5s)
-        let waitIterations = 0;
-        while (hnswInitializing && waitIterations < 500) {
-            await new Promise(resolve => setTimeout(resolve, 10));
-            waitIterations++;
-        }
-        if (hnswInitializing) {
-            throw new Error('HNSW initialization timed out after 5s');
-        }
-        // Init may have failed — return null rather than a non-initialized index object
-        return hnswIndex?.initialized ? hnswIndex : null;
-    }
-    hnswInitializing = true;
-    try {
-        const HNSWIndexClass = await loadHNSWIndexClass();
-        if (!HNSWIndexClass) {
-            // @monoes/memory isn't installed — no pure-JS fallback available;
-            // callers fall through to brute-force search.
-            hnswInitializing = false;
-            return null;
-        }
-        const dbPath = options?.dbPath ?? path.join(process.cwd(), '.swarm', 'memory.db');
-        const loaded = await loadEntriesFromDb(dbPath, dimensions);
-        const instance = new HNSWIndexClass({ dimensions });
-        await instance.rebuild(loaded.map((l) => ({ id: l.id, vector: l.vector })));
-        const entries = new Map();
-        for (const l of loaded)
-            entries.set(l.id, l.entry);
-        hnswIndex = { instance, entries, dimensions, initialized: true };
-        hnswInitializing = false;
-        return hnswIndex;
-    }
-    catch {
-        hnswInitializing = false;
-        return null;
-    }
-}
-/**
- * Save HNSW metadata to disk for persistence
- */
-function saveHNSWMetadata() {
-    if (!hnswIndex?.entries)
-        return;
-    try {
-        const swarmDir = path.join(process.cwd(), '.swarm');
-        const metadataPath = path.join(swarmDir, 'hnsw.metadata.json');
-        const metadata = Array.from(hnswIndex.entries.entries());
-        const tmp = metadataPath + '.tmp';
-        fs.writeFileSync(tmp, JSON.stringify(metadata));
-        fs.renameSync(tmp, metadataPath);
-    }
-    catch {
-        // Silently fail - metadata save is best-effort
-    }
-}
-/**
- * Add entry to HNSW index (with automatic persistence)
- */
-export async function addToHNSWIndex(id, embedding, entry) {
-    const index = await getHNSWIndex({ dimensions: embedding.length });
-    if (!index)
-        return false;
-    try {
-        const vector = new Float32Array(embedding);
-        await index.instance.addPoint(id, vector);
-        index.entries.set(id, entry);
-        // Save metadata for persistence (debounced would be better for high-volume)
-        saveHNSWMetadata();
-        return true;
-    }
-    catch {
-        return false;
-    }
-}
-/**
- * Search HNSW index (0 faster than brute-force)
- * Returns results sorted by similarity (highest first)
- */
-export async function searchHNSWIndex(queryEmbedding, options) {
-    const index = await getHNSWIndex({ dimensions: queryEmbedding.length });
-    if (!index)
-        return null;
-    try {
-        const vector = new Float32Array(queryEmbedding);
-        const k = options?.k ?? 10;
-        // HNSW search returns results with cosine distance (lower = more similar)
-        const results = await index.instance.search(vector, k * 2); // Get extra for filtering
-        const filtered = [];
-        for (const result of results) {
-            const entry = index.entries.get(result.id);
-            if (!entry)
-                continue;
-            // Filter by namespace if specified
-            if (options?.namespace && options.namespace !== 'all' && entry.namespace !== options.namespace) {
-                continue;
-            }
-            // Convert cosine distance to similarity score (1 - distance)
-            // Cosine distance convention: 0 = identical, 2 = opposite
-            const score = 1 - (result.distance / 2);
-            filtered.push({
-                id: entry.id.substring(0, 12),
-                key: entry.key || entry.id.substring(0, 15),
-                content: entry.content.substring(0, 60) + (entry.content.length > 60 ? '...' : ''),
-                score,
-                namespace: entry.namespace
-            });
-            if (filtered.length >= k)
-                break;
-        }
-        // Sort by score descending (highest similarity first)
-        filtered.sort((a, b) => b.score - a.score);
-        return filtered;
-    }
-    catch {
-        return null;
-    }
-}
-/**
- * Get HNSW index status
- */
-export function getHNSWStatus() {
-    // ADR-053: If bridge was previously loaded, report availability
-    if (_bridge && _bridge !== null) {
-        // Bridge is loaded — HNSW-equivalent is available via the SQLite backend
-        return {
-            available: true,
-            initialized: true,
-            entryCount: hnswIndex?.entries.size ?? 0,
-            dimensions: hnswIndex?.dimensions ?? BRIDGE_EMBEDDING_DIMS
-        };
-    }
-    return {
-        available: hnswIndex !== null,
-        initialized: hnswIndex?.initialized ?? false,
-        entryCount: hnswIndex?.entries.size ?? 0,
-        dimensions: hnswIndex?.dimensions ?? BRIDGE_EMBEDDING_DIMS
-    };
-}
-/**
- * Clear the HNSW index (for rebuilding)
- */
-export function clearHNSWIndex() {
-    hnswIndex = null;
-}
-/**
- * Invalidate the in-memory HNSW cache so the next search rebuilds from DB.
- * Call this after deleting entries that had embeddings to prevent ghost
- * vectors from appearing in search results.
- */
-export function rebuildSearchIndex() {
-    hnswIndex = null;
-    hnswInitializing = false;
-}
 // ============================================================================
 // INT8 VECTOR QUANTIZATION (4x memory reduction)
 // ============================================================================
@@ -338,7 +90,14 @@ export function getQuantizationStats(embedding) {
     return { originalBytes, quantizedBytes, compressionRatio };
 }
 // ============================================================================
-// FLASH ATTENTION-STYLE BATCH OPERATIONS (V8-Optimized)
+// BATCHED COSINE SIMILARITY OPERATIONS (V8-Optimized)
+//
+// Despite the historical function names below, this is plain batched cosine
+// similarity + softmax-weighted top-k selection — not an implementation of
+// Flash Attention (a specific fused/tiled GPU kernel technique for
+// transformer attention). Naming kept for now to avoid a breaking export
+// rename across memory-initializer.ts/index.ts/performance.ts; the comments
+// here describe what the code actually does.
 // ============================================================================
 /**
  * Batch cosine similarity - compute query against multiple vectors
@@ -451,9 +210,10 @@ export function topKIndices(scores, k) {
     return heap.sort((a, b) => b.score - a.score).map(h => h.idx);
 }
 /**
- * Flash Attention-style search
+ * Batched cosine similarity search with softmax-weighted scoring.
  * Combines batch similarity, softmax, and top-k in one pass.
- * Returns indices and attention weights.
+ * Returns indices and normalized weights (not a Flash Attention kernel —
+ * see the module-level note above).
  */
 export function flashAttentionSearch(query, vectors, options = {}) {
     const { k = 10, temperature = 1.0, threshold = 0 } = options;