@monoes/monomindcli 2.9.22 → 2.9.23

package/dist/src/commands/tokens.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"tokens.d.ts","sourceRoot":"","sources":["../../../src/commands/tokens.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AA0M1E,eAAO,MAAM,aAAa,EAAE,OAI3B,CAAC;eAEa,aAAa"}
+{"version":3,"file":"tokens.d.ts","sourceRoot":"","sources":["../../../src/commands/tokens.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAiC,MAAM,aAAa,CAAC;AAyM1E,eAAO,MAAM,aAAa,EAAE,OAI3B,CAAC;eAEa,aAAa"}

package/dist/src/commands/tokens.js

@@ -127,12 +127,11 @@ const leanDeltaSubcommand = {
     options: [],
     action: async (_ctx) => {
         try {
-            const { join: pathJoin, dirname: pathDirname } = await import('path');
-            const { fileURLToPath } = await import('url');
+            const { join: pathJoin } = await import('path');
             const { readdirSync, readFileSync } = await import('fs');
-            // Locate capture directory
-            const __dirname = pathDirname(fileURLToPath(import.meta.url));
-            const projectRoot = pathJoin(__dirname, '..', '..', '..', '..', '..', '..');
+            // Locate capture directory relative to the invoking project (cwd),
+            // matching how the rest of the CLI resolves `.monomind` paths.
+            const projectRoot = process.cwd();
             const captureDir = pathJoin(projectRoot, '.monomind', 'capture');
             // Load all run capture logs
             let snapshots = [];

package/dist/src/commands/tokens.js.map

@@ -1 +1 @@
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package/dist/src/consensus/audit-writer.d.ts

@@ -1,5 +1,5 @@
-/** Supported consensus protocols. */
-export type ConsensusProtocol = 'byzantine' | 'raft' | 'gossip' | 'crdt' | 'quorum';
+/** Supported vote-threshold strategies (see monoswarm-tools.ts — not distributed consensus protocols). */
+export type ConsensusProtocol = 'majority' | 'supermajority' | 'unanimous' | 'threshold';
 /** A single signed vote cast by an agent. */
 export interface VoteRecord {
     agentId: string;

package/dist/src/consensus/audit-writer.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"audit-writer.d.ts","sourceRoot":"","sources":["../../../src/consensus/audit-writer.ts"],"names":[],"mappings":"AAyDA,0GAA0G;AAC1G,MAAM,MAAM,iBAAiB,GAAG,UAAU,GAAG,eAAe,GAAG,WAAW,GAAG,WAAW,CAAC;AAEzF,6CAA6C;AAC7C,MAAM,WAAW,UAAU;IACzB,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,mDAAmD;AACnD,MAAM,WAAW,WAAW;IAC1B,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,OAAO,CAAC;CACpB;AAED,kDAAkD;AAClD,MAAM,WAAW,oBAAoB;IACnC,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE,iBAAiB,CAAC;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,OAAO,CAAC;IAClB,KAAK,EAAE,UAAU,EAAE,CAAC;IACpB,WAAW,EAAE,WAAW,CAAC;IACzB,cAAc,EAAE,OAAO,CAAC;IACxB,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;IAC1B,wFAAwF;IACxF,eAAe,CAAC,EAAE,MAAM,CAAC;CAC1B;AAED,+DAA+D;AAC/D,MAAM,MAAM,YAAY,GAAG,IAAI,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;AAEzD,2CAA2C;AAC3C,MAAM,WAAW,WAAW;IAC1B,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE,iBAAiB,CAAC;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,OAAO,CAAC;IAClB,KAAK,EAAE,YAAY,EAAE,CAAC;IACtB,cAAc,EAAE,MAAM,CAAC;IACvB,eAAe,EAAE,MAAM,CAAC;IACxB,KAAK,EAAE,MAAM,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,0DAA0D;AAC1D,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,OAAO,CAAC;IACf,YAAY,EAAE,MAAM,EAAE,CAAC;CACxB;AAED,qBAAa,WAAW;IACtB,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAS;IACnC,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAS;IAEnC,YAAY,OAAO,EAAE,MAAM,EAY1B;IAED;;;OAGG;IACH,MAAM,CAAC,KAAK,EAAE,WAAW,GAAG,oBAAoB,CAqE/C;IAED;;OAEG;IACH,aAAa,CAAC,OAAO,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,oBAAoB,EAAE,CAMtE;IAED;;OAEG;IACH,cAAc,CAAC,UAAU,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,GAAG,YAAY,CAyBtE;IAID,OAAO,CAAC,UAAU;IAUlB,OAAO,CAAC,SAAS;CAelB"}

package/dist/src/consensus/audit-writer.js

@@ -181,7 +181,7 @@ export class AuditWriter {
         // log, a permissions error, an I/O failure — is an *unreadable* trail, and
         // must not be reported as an empty one: this file is the tamper-evidence
         // record, so "0 records" and "cannot read" have opposite meanings.
-        // Callers (hive-mind_audit_list / _verify) already surface a throw as
+        // Callers (monoswarm_audit_list / _verify) already surface a throw as
         // `success: false` with the message.
         if (!existsSync(filePath))
             return [];

package/dist/src/index.d.ts

@@ -49,7 +49,7 @@ export declare class CLI {
     private loadConfig;
     /**
      * Initialize optional subsystems at startup (non-blocking, all failures are silent).
-     * Starts the @monoes/hooks WorkerManager, wires SwarmCheckpointer, and builds
+     * Starts the @monoes/hooks WorkerManager, wires MonoswarmCheckpointer, and builds
      * the unified agent registry so that packages/@monomind/* actually contribute
      * to the live runtime.
      */
@@ -65,7 +65,7 @@ export { OutputFormatter, output, Progress, Spinner, type VerbosityLevel } from
 export * from './prompt.js';
 export * from './commands/index.js';
 export { MCPServerManager, createMCPServerManager, getServerManager, startMCPServer, stopMCPServer, getMCPServerStatus, type MCPServerOptions, type MCPServerStatus, } from './mcp-server.js';
-export { initializeMemoryDatabase, generateEmbedding, generateBatchEmbeddings, storeEntry, searchEntries, getHNSWIndex, addToHNSWIndex, searchHNSWIndex, getHNSWStatus, clearHNSWIndex, quantizeInt8, dequantizeInt8, quantizedCosineSim, getQuantizationStats, batchCosineSim, softmaxAttention, topKIndices, flashAttentionSearch, type MemoryInitResult, } from './memory/memory-initializer.js';
+export { initializeMemoryDatabase, generateEmbedding, generateBatchEmbeddings, storeEntry, searchEntries, getHNSWStatus, forceBuildHNSWIndex, quantizeInt8, dequantizeInt8, quantizedCosineSim, getQuantizationStats, batchCosineSim, softmaxAttention, topKIndices, flashAttentionSearch, type MemoryInitResult, } from './memory/memory-initializer.js';
 export { initializeIntelligence, recordStep, recordTrajectory, findSimilarPatterns, getIntelligenceStats, getSonaCoordinator, getReasoningBank, clearIntelligence, benchmarkAdaptation, endTrajectoryWithVerdict, distillLearning, getAllPatterns, getPatternsByType, flushPatterns, deletePattern, clearAllPatterns, getNeuralDataDir, getPersistenceStatus, type SonaConfig, type TrajectoryStep, type Pattern, type IntelligenceStats, } from './memory/intelligence.js';
 export default CLI;
 //# sourceMappingURL=index.d.ts.map

package/dist/src/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AA6BH,eAAO,MAAM,OAAO,QAAsB,CAAC;AAE3C,MAAM,WAAW,UAAU;IACzB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,OAAO,CAAC;CACvB;AAED;;GAEG;AACH,qBAAa,GAAG;IACd,OAAO,CAAC,IAAI,CAAS;IACrB,OAAO,CAAC,WAAW,CAAS;IAC5B,OAAO,CAAC,OAAO,CAAS;IACxB,OAAO,CAAC,MAAM,CAAgB;IAC9B,OAAO,CAAC,MAAM,CAAkB;IAChC,OAAO,CAAC,WAAW,CAAU;IAE7B,YAAY,OAAO,GAAE,UAAe,EAOnC;IAED;;OAEG;IACG,GAAG,CAAC,IAAI,GAAE,MAAM,EAA0B,GAAG,OAAO,CAAC,IAAI,CAAC,CA+M/D;IAED;;OAEG;YACW,QAAQ;IAyFtB;;OAEG;YACW,eAAe;IAsE7B;;OAEG;IACH,OAAO,CAAC,WAAW;IAKnB;;;OAGG;YACW,wBAAwB;IAoBtC;;OAEG;YACW,UAAU;IA6BxB;;;;;OAKG;YACW,cAAc;IA2D5B;;OAEG;IACH,OAAO,CAAC,WAAW;CAuBpB;AAOD,cAAc,YAAY,CAAC;AAG3B,OAAO,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAG3D,OAAO,EAAE,eAAe,EAAE,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,KAAK,cAAc,EAAE,MAAM,aAAa,CAAC;AAG9F,cAAc,aAAa,CAAC;AAG5B,cAAc,qBAAqB,CAAC;AAGpC,OAAO,EACL,gBAAgB,EAChB,sBAAsB,EACtB,gBAAgB,EAChB,cAAc,EACd,aAAa,EACb,kBAAkB,EAClB,KAAK,gBAAgB,EACrB,KAAK,eAAe,GACrB,MAAM,iBAAiB,CAAC;AAGzB,OAAO,EACL,wBAAwB,EACxB,iBAAiB,EACjB,uBAAuB,EACvB,UAAU,EACV,aAAa,EACb,aAAa,EACb,mBAAmB,EACnB,YAAY,EACZ,cAAc,EACd,kBAAkB,EAClB,oBAAoB,EAEpB,cAAc,EACd,gBAAgB,EAChB,WAAW,EACX,oBAAoB,EACpB,KAAK,gBAAgB,GACtB,MAAM,gCAAgC,CAAC;AAExC,OAAO,EACL,sBAAsB,EACtB,UAAU,EACV,gBAAgB,EAChB,mBAAmB,EACnB,oBAAoB,EACpB,kBAAkB,EAClB,gBAAgB,EAChB,iBAAiB,EACjB,mBAAmB,EAEnB,wBAAwB,EACxB,eAAe,EAEf,cAAc,EACd,iBAAiB,EACjB,aAAa,EACb,aAAa,EACb,gBAAgB,EAChB,gBAAgB,EAChB,oBAAoB,EACpB,KAAK,UAAU,EACf,KAAK,cAAc,EACnB,KAAK,OAAO,EACZ,KAAK,iBAAiB,GACvB,MAAM,0BAA0B,CAAC;eAGnB,GAAG"}

package/dist/src/index.js

@@ -325,7 +325,7 @@ export class CLI {
         this.output.writeln();
         this.output.writeln(this.output.bold('EXAMPLES:'));
         this.output.writeln(`  ${this.name} agent spawn -t coder              # Spawn a coder agent`);
-        this.output.writeln(`  ${this.name} swarm init --v1-mode              # Initialize swarm`);
+        this.output.writeln(`  ${this.name} monoswarm init --v1-mode          # Initialize monoswarm`);
         this.output.writeln(`  ${this.name} memory search -q "auth patterns"  # Semantic search`);
         this.output.writeln(`  ${this.name} mcp start                         # Start MCP server`);
         this.output.writeln();
@@ -383,6 +383,8 @@ export class CLI {
         if (target.options && target.options.length > 0) {
             this.output.writeln(this.output.bold('OPTIONS:'));
             for (const opt of target.options) {
+                if (opt.hidden)
+                    continue;
                 const flags = opt.short ? `-${opt.short}, --${opt.name}` : `    --${opt.name}`;
                 const required = opt.required ? this.output.error(' (required)') : '';
                 const defaultVal = opt.default !== undefined ? this.output.dim(` [default: ${opt.default}]`) : '';
@@ -459,7 +461,7 @@ export class CLI {
     }
     /**
      * Initialize optional subsystems at startup (non-blocking, all failures are silent).
-     * Starts the @monoes/hooks WorkerManager, wires SwarmCheckpointer, and builds
+     * Starts the @monoes/hooks WorkerManager, wires MonoswarmCheckpointer, and builds
      * the unified agent registry so that packages/@monomind/* actually contribute
      * to the live runtime.
      */
@@ -472,12 +474,12 @@ export class CLI {
         // outlived the stagger, so the consolidate worker fired mid-command,
         // loaded the onnxruntime embedding model, and its thread pool crashed the
         // process at exit ("mutex lock failed: Invalid argument" from libc++).
-        // GAP-007: SwarmCheckpointer — write checkpoint files so crashed swarms can resume
+        // GAP-007: MonoswarmCheckpointer — write checkpoint files so crashed monoswarms can resume
         try {
-            const { SwarmCheckpointer } = await import('@monoes/memory');
-            const _swarmCheckpointer = new SwarmCheckpointer({
-                dbPath: '.monomind/checkpoints/swarm.jsonl',
-                swarmId: 'default',
+            const { MonoswarmCheckpointer } = await import('@monoes/memory');
+            const _swarmCheckpointer = new MonoswarmCheckpointer({
+                dbPath: '.monomind/checkpoints/monoswarm.jsonl',
+                monoswarmId: 'default',
                 sessionId: `session-${Date.now()}`,
             });
             void _swarmCheckpointer;
@@ -485,7 +487,7 @@ export class CLI {
         catch (e) {
             // optional — monomind/memory may not be installed
             if (process.env.DEBUG || process.env.MONOMIND_DEBUG)
-                console.error('[index] SwarmCheckpointer init failed:', e);
+                console.error('[index] MonoswarmCheckpointer init failed:', e);
         }
         // Task 30: Build unified agent registry — extras (canonical) first, dev copies second.
         // Deduplication is slug-based; agency-agents wins on conflict.
@@ -560,8 +562,8 @@ export * from './commands/index.js';
 // MCP Server management
 export { MCPServerManager, createMCPServerManager, getServerManager, startMCPServer, stopMCPServer, getMCPServerStatus, } from './mcp-server.js';
 // Memory & Intelligence (V1 Performance Features)
-export { initializeMemoryDatabase, generateEmbedding, generateBatchEmbeddings, storeEntry, searchEntries, getHNSWIndex, addToHNSWIndex, searchHNSWIndex, getHNSWStatus, clearHNSWIndex, quantizeInt8, dequantizeInt8, quantizedCosineSim, getQuantizationStats, 
-// Flash Attention-style batch operations
+export { initializeMemoryDatabase, generateEmbedding, generateBatchEmbeddings, storeEntry, searchEntries, getHNSWStatus, forceBuildHNSWIndex, quantizeInt8, dequantizeInt8, quantizedCosineSim, getQuantizationStats, 
+// Batched cosine similarity operations
 batchCosineSim, softmaxAttention, topKIndices, flashAttentionSearch, } from './memory/memory-initializer.js';
 export { initializeIntelligence, recordStep, recordTrajectory, findSimilarPatterns, getIntelligenceStats, getSonaCoordinator, getReasoningBank, clearIntelligence, benchmarkAdaptation, 
 // RL loop API

package/dist/src/index.js.map

@@ -1 +1 @@
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package/dist/src/init/claudemd-generator.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"claudemd-generator.d.ts","sourceRoot":"","sources":["../../../src/init/claudemd-generator.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAGH,OAAO,KAAK,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AA+kBhE;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,CAAC,EAAE,gBAAgB,GAAG,MAAM,CAQ1F;AAED;;GAEG;AACH,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAEpE;AAED,8CAA8C;AAC9C,eAAO,MAAM,mBAAmB,EAAE,KAAK,CAAC;IAAE,IAAI,EAAE,gBAAgB,CAAC;IAAC,WAAW,EAAE,MAAM,CAAA;CAAE,CAOtF,CAAC;eAEa,gBAAgB"}

package/dist/src/init/claudemd-generator.js

@@ -103,7 +103,6 @@ function projectArchitecture(options) {
 - **Topology**: ${options.runtime.topology}
 - **Max Agents**: ${options.runtime.maxAgents}
 - **Memory**: ${options.runtime.memoryBackend}
-- **HNSW**: ${options.runtime.enableHNSW ? 'Available (fallback path)' : 'Disabled'}
 - **Neural**: Disabled (keyword routing only)`;
 }
 function concurrencyRules() {
@@ -117,49 +116,49 @@ function concurrencyRules() {
 - ALWAYS batch ALL Bash commands in ONE message`;
 }
 function swarmOrchestration() {
-    return `## Swarm Orchestration
+    return `## Monoswarm Orchestration
 
-- MUST initialize the swarm using CLI tools when starting complex tasks
+- MUST initialize the monoswarm using CLI tools when starting complex tasks
 - MUST spawn concurrent agents using Claude Code's Task tool
 - Never use CLI tools alone for execution — Task tool agents do the actual work
 - MUST call CLI tools AND Task tool in ONE message for complex work`;
 }
 // Consolidated spawn/anti-drift rule — emitted ONCE in the standard template
-// (previously repeated across Swarm Orchestration, Anti-Drift, and Execution
-// Rules). Kept out of the minimal template entirely.
+// (previously repeated across Monoswarm Orchestration, Anti-Drift, and
+// Execution Rules). Kept out of the minimal template entirely.
 function swarmRules() {
-    return `## Swarm Rules
+    return `## Monoswarm Rules
 
-- MUST initialize the swarm for complex tasks: \`npx monomind@latest swarm init --topology hierarchical --max-agents 8 --strategy specialized\`
+- MUST initialize the monoswarm for complex tasks: \`npx monomind@latest monoswarm init --topology hierarchical --max-agents 8 --strategy specialized\`
 - ALWAYS spawn ALL agents in ONE message via the Task tool with \`run_in_background: true\` — CLI tools coordinate, Task agents do the work
-- After spawning, STOP — never poll TaskOutput or check swarm status; trust agents to return
+- After spawning, STOP — never poll TaskOutput or check monoswarm status; trust agents to return
 - When agent results arrive, review ALL results before proceeding
 - Keep shared memory namespace for all agents; run frequent checkpoints via \`post-task\` hooks`;
 }
 function antiDriftConfig() {
-    return `## Swarm Configuration & Anti-Drift
+    return `## Monoswarm Configuration & Anti-Drift
 
 - ALWAYS use hierarchical topology for coding swarms
 - Keep maxAgents at 6-8 for tight coordination
 - Use specialized strategy for clear role boundaries
-- Use \`raft\` consensus for hive-mind (leader maintains authoritative state)
+- Use \`majority\` consensus for monoswarm
 - Run frequent checkpoints via \`post-task\` hooks
 - Keep shared memory namespace for all agents
 
 \`\`\`bash
-npx monomind@latest swarm init --topology hierarchical --max-agents 8 --strategy specialized
+npx monomind@latest monoswarm init --topology hierarchical --max-agents 8 --strategy specialized
 \`\`\``;
 }
 function autoStartProtocol() {
-    return `## Swarm Protocols & Routing
+    return `## Monoswarm Protocols & Routing
 
-### Auto-Start Swarm Protocol
+### Auto-Start Monoswarm Protocol
 
 When the user requests a complex task, spawn agents in background and WAIT:
 
 \`\`\`javascript
-// STEP 1: Initialize swarm coordination
-Bash("npx monomind@latest swarm init --topology hierarchical --max-agents 8 --strategy specialized")
+// STEP 1: Initialize monoswarm coordination
+Bash("npx monomind@latest monoswarm init --topology hierarchical --max-agents 8 --strategy specialized")
 
 // STEP 2: Spawn ALL agents IN BACKGROUND in a SINGLE message
 Task({prompt: "Research requirements...", subagent_type: "researcher", run_in_background: true})
@@ -181,16 +180,16 @@ Task({prompt: "Review code quality...", subagent_type: "reviewer", run_in_backgr
 
 ### Task Complexity Detection
 
-- AUTO-INVOKE SWARM when task involves: 3+ files, new features, cross-module refactoring, API changes, security, or performance work
-- SKIP SWARM for: single file edits, simple bug fixes (1-2 lines), documentation updates, configuration changes`;
+- AUTO-INVOKE MONOSWARM when task involves: 3+ files, new features, cross-module refactoring, API changes, security, or performance work
+- SKIP MONOSWARM for: single file edits, simple bug fixes (1-2 lines), documentation updates, configuration changes`;
 }
 function executionRules() {
-    return `## Swarm Execution Rules
+    return `## Monoswarm Execution Rules
 
 - ALWAYS use \`run_in_background: true\` for all agent Task calls
 - ALWAYS put ALL agent Task calls in ONE message for parallel execution
 - After spawning, STOP — do NOT add more tool calls or check status
-- Never poll TaskOutput or check swarm status — trust agents to return
+- Never poll TaskOutput or check monoswarm status — trust agents to return
 - When agent results arrive, review ALL results before proceeding`;
 }
 function cliCommandsTable() {
@@ -203,29 +202,31 @@ function cliCommandsTable() {
 |---------|-------------|-------------|
 | \`init\` | 5 | Project initialization |
 | \`agent\` | 7 | Agent lifecycle management |
-| \`swarm\` | 6 | Multi-agent swarm coordination |
+| \`monoswarm\` | 6 | Multi-agent coordination |
 | \`memory\` | 12 | SQLite memory with ANN search |
 | \`task\` | 5 | Task creation and lifecycle |
 | \`session\` | 6 | Session state management |
 | \`hooks\` | 29 | Self-learning hooks + 8 background workers${unavailNote(avail.hooks)} |
 
-> Note: there is no \`hive-mind\` or \`neural\` CLI command. Hive-mind
-> consensus (byzantine/raft/quorum) is available exclusively via MCP tools
-> (\`hive-mind_*\`), not the CLI. Neural pattern learning was merged into
-> \`hooks intelligence\`.
+> Note: there is no \`neural\` CLI command. Neural pattern learning was merged
+> into \`hooks intelligence\`. See \`doc/concepts/monoswarm.md\` for monoswarm
+> coordination and vote strategies.
 
 ### Quick CLI Examples
 
 \`\`\`bash
 npx monomind@latest init --wizard
 npx monomind@latest agent spawn -t coder --name my-coder
-npx monomind@latest swarm init --v1-mode
+npx monomind@latest monoswarm init --v1-mode
 npx monomind@latest memory search --query "authentication patterns"
 npx monomind@latest doctor --fix
 \`\`\``;
 }
 function agentTypes() {
-    return `## Available Agents (60+ Types)
+    return `## Available Agents (Curated Subset)
+
+The full roster ships as \`.claude/agents/**/*.md\` — this is a hand-picked
+subset worth routing to by name; it is not the complete set.
 
 ### Core Development
 \`coder\`, \`reviewer\`, \`tester\`, \`planner\`, \`researcher\`
@@ -233,7 +234,7 @@ function agentTypes() {
 ### Specialized
 \`security-architect\`
 
-### Swarm Coordination
+### Monoswarm Coordination
 \`mesh-coordinator\`
 
 ### GitHub & Repository
@@ -432,7 +433,7 @@ function setupAndBoundary() {
     return `## Quick Setup
 
 \`\`\`bash
-# Add MCP server — includes monograph, swarm, memory, hooks, all 66+ tools
+# Add MCP server — includes monograph, monoswarm, memory, hooks, all 66+ tools
 claude mcp add monomind -- npx -y monomind@latest mcp start
 
 # Verify everything works
@@ -444,7 +445,7 @@ npx monomind@latest doctor --fix
 ## Claude Code vs CLI Tools
 
 - Claude Code's Task tool handles ALL execution: agents, file ops, code generation, git
-- CLI tools handle coordination via Bash: swarm init, memory, hooks, routing
+- CLI tools handle coordination via Bash: monoswarm init, memory, hooks, routing
 - NEVER use CLI tools as a substitute for Task tool agents
 
 ## Support
@@ -581,11 +582,11 @@ export function generateMinimalClaudeMd(options) {
 /** Available template names for CLI wizard */
 export const CLAUDE_MD_TEMPLATES = [
     { name: 'minimal', description: 'Quick start — behavioral rules, CLI reference (~160 lines)' },
-    { name: 'standard', description: 'Recommended — swarm rules, agents, memory commands (~225 lines)' },
+    { name: 'standard', description: 'Recommended — monoswarm rules, agents, memory commands (~225 lines)' },
     { name: 'full', description: 'Everything — hooks, learning protocol, intelligence system (~400 lines)' },
     { name: 'security', description: 'Security-focused — adds security scanning, audit protocols, CVE checks' },
     { name: 'performance', description: 'Performance-focused — adds benchmarking, profiling, optimization protocols' },
-    { name: 'solo', description: 'Solo developer — no swarm, simple agent usage, memory commands (~150 lines)' },
+    { name: 'solo', description: 'Solo developer — no monoswarm, simple agent usage, memory commands (~150 lines)' },
 ];
 export default generateClaudeMd;
 //# sourceMappingURL=claudemd-generator.js.map

package/dist/src/init/claudemd-generator.js.map

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package/dist/src/init/codex-generator.d.ts

@@ -0,0 +1,10 @@
+/**
+ * Codex project configuration generator.
+ *
+ * Codex reads project configuration from `.codex/config.toml` and project
+ * instructions from `AGENTS.md`. This target is additive and opt-in.
+ */
+import type { InitOptions } from './types.js';
+export declare function generateCodexConfig(options: InitOptions): string;
+export declare function generateCodexAgentsMd(): string;
+//# sourceMappingURL=codex-generator.d.ts.map

package/dist/src/init/codex-generator.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"codex-generator.d.ts","sourceRoot":"","sources":["../../../src/init/codex-generator.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAa9C,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAsBhE;AAED,wBAAgB,qBAAqB,IAAI,MAAM,CAsC9C"}

package/dist/src/init/codex-generator.js

@@ -0,0 +1,67 @@
+/**
+ * Codex project configuration generator.
+ *
+ * Codex reads project configuration from `.codex/config.toml` and project
+ * instructions from `AGENTS.md`. This target is additive and opt-in.
+ */
+function tomlString(value) {
+    return JSON.stringify(value);
+}
+function monomindCommand() {
+    if (process.platform === 'win32') {
+        return { command: 'cmd', args: ['/c', 'npx', '-y', 'monomind@latest', 'mcp', 'start'] };
+    }
+    return { command: 'npx', args: ['-y', 'monomind@latest', 'mcp', 'start'] };
+}
+export function generateCodexConfig(options) {
+    const lines = [
+        '# Generated by monomind init --codex.',
+        '# This project-scoped config is loaded only when the project is trusted.',
+        '',
+    ];
+    if (options.mcp.monomind) {
+        const server = monomindCommand();
+        lines.push('[mcp_servers.monomind]', `command = ${tomlString(server.command)}`, `args = [${server.args.map(tomlString).join(', ')}]`, 'enabled = true', 'startup_timeout_sec = 30', 'tool_timeout_sec = 120', `env = { npm_config_update_notifier = "false", MONOMIND_MODE = "v1", MONOMIND_HOOKS_ENABLED = "true", MONOMIND_TOPOLOGY = ${tomlString(options.runtime.topology)}, MONOMIND_MAX_AGENTS = ${tomlString(String(options.runtime.maxAgents))}, MONOMIND_MEMORY_BACKEND = ${tomlString(options.runtime.memoryBackend)} }`, '');
+    }
+    return lines.join('\n');
+}
+export function generateCodexAgentsMd() {
+    return [
+        '# AGENTS.md — Monomind on Codex',
+        '',
+        'Monomind is wired into Codex through `.codex/config.toml`.',
+        'Its MCP tools provide code navigation, impact analysis, persistent memory,',
+        'and agent routing for this project.',
+        '',
+        '## Code navigation',
+        '',
+        'Use Monomind graph tools before broad grep/find exploration when inspecting',
+        'the codebase. Fall back to grep when the graph has no relevant results.',
+        '',
+        '## Memory',
+        '',
+        'Store durable project insights in Monomind memory and recall prior decisions',
+        'before repeating investigation or implementation work.',
+        '',
+        '## Security',
+        '',
+        '- Never hardcode secrets or commit `.env` files.',
+        '- Validate input at system boundaries.',
+        '- Run `npx monomind@latest security scan` after security-related changes.',
+        '',
+        '## Autonomous organizations',
+        '',
+        'Org roles can run on Codex with `runtime: "codex"` in their org definition.',
+        '',
+        '```bash',
+        'monomind org run <name> --task "..."',
+        '```',
+        '',
+        '## Project commands',
+        '',
+        'Use the project commands in `.agents/shared_instructions.md` for build, test,',
+        'lint, and typecheck validation.',
+        '',
+    ].join('\n');
+}
+//# sourceMappingURL=codex-generator.js.map

package/dist/src/init/codex-generator.js.map

@@ -0,0 +1 @@
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