@monoes/monomindcli 2.8.4 → 2.9.1

package/dist/src/mcp-tools/monograph/visualize-tools.js

@@ -0,0 +1,382 @@
+import { join, resolve, sep } from 'path';
+import { getProjectCwd } from '../types.js';
+import { getDbPath, text } from './shared.js';
+// Columns needed to render/export the graph — deliberately excludes `embedding`,
+// which can be several KB per node (384D vectors) and would otherwise bloat
+// tool-result payloads and written files by many MB.
+const NODE_RENDER_COLUMNS = 'id, label, name, norm_label, file_path, start_line, end_line, community_id, is_exported, language, properties';
+// ── monograph_visualize ───────────────────────────────────────────────────────
+export const monographVisualizeTool = {
+    name: 'monograph_visualize',
+    description: 'Render the knowledge graph as HTML (default), SVG, or JSON. Writes output to a file under .monomind/visualize/ and returns the file path (output can be multi-MB at the max node count, too large to return inline).',
+    inputSchema: {
+        type: 'object',
+        properties: {
+            format: { type: 'string', description: 'Output format: html, svg, json (default: html)' },
+            maxNodes: { type: 'number', description: 'Max nodes to include (default 500)' },
+        },
+    },
+    handler: async (input) => {
+        const { openDb, closeDb, toJson, toHtml, toSvg } = await import('@monoes/monograph');
+        const { writeFileSync, mkdirSync } = await import('fs');
+        const db = openDb(getDbPath());
+        try {
+            // Cap maxNodes: passed to SQL LIMIT clause for both nodes (n) and edges
+            // (n*3).  Without a cap an attacker requests all rows from both tables.
+            const MAX_EXPORT_NODES = 10_000;
+            const rawMaxNodes = input.maxNodes ?? 500;
+            const limit = Number.isFinite(rawMaxNodes) && rawMaxNodes > 0
+                ? Math.min(Math.floor(rawMaxNodes), MAX_EXPORT_NODES)
+                : 500;
+            const nodes = db.prepare(`SELECT ${NODE_RENDER_COLUMNS} FROM nodes LIMIT ?`).all(limit);
+            // Only include edges where both endpoints are in the visible node set
+            const edges = db.prepare(`
+        SELECT e.* FROM edges e
+        WHERE e.source_id IN (SELECT id FROM nodes LIMIT ?)
+          AND e.target_id IN (SELECT id FROM nodes LIMIT ?)
+        LIMIT ?
+      `).all(limit, limit, limit * 3);
+            const fmt = input.format ?? 'html';
+            const rendered = fmt === 'json' ? toJson(nodes, edges)
+                : fmt === 'svg' ? toSvg(nodes, edges)
+                    : toHtml(nodes, edges);
+            const ext = fmt === 'json' ? 'json' : fmt === 'svg' ? 'svg' : 'html';
+            const outDir = resolve(join(getProjectCwd(), '.monomind', 'visualize'));
+            mkdirSync(outDir, { recursive: true });
+            const outPath = join(outDir, `graph-${Date.now()}.${ext}`);
+            writeFileSync(outPath, rendered);
+            return text(`Visualization written to ${outPath} (${nodes.length} nodes, ${edges.length} edges)${ext === 'html' ? '\nNote: HTML uses the vis-network CDN script and requires network access to render.' : ''}`);
+        }
+        finally {
+            closeDb(db);
+        }
+    },
+};
+// ── monograph_export ────────────────────────────────────────────────────────
+export const monographExportTool = {
+    name: 'monograph_export',
+    description: 'Export the knowledge graph in various formats: obsidian, canvas, cypher, graphml, svg, json.',
+    inputSchema: {
+        type: 'object',
+        properties: {
+            format: { type: 'string', description: 'Format: obsidian, canvas, cypher, graphml, svg, json' },
+            outputPath: { type: 'string', description: 'Output path' },
+        },
+        required: ['format'],
+    },
+    handler: async (input) => {
+        const { openDb, closeDb, toJson, toSvg, toGraphml, toCypher, toObsidian, toCanvas } = await import('@monoes/monograph');
+        const { writeFileSync, mkdirSync } = await import('fs');
+        const db = openDb(getDbPath());
+        try {
+            // Exclude `embedding` — a several-KB-per-node vector column that would
+            // otherwise bloat exported files by many MB for no rendering benefit.
+            const nodes = db.prepare(`SELECT ${NODE_RENDER_COLUMNS} FROM nodes`).all();
+            const edges = db.prepare('SELECT * FROM edges').all();
+            const fmt = input.format;
+            const requestedOut = input.outputPath ?? join(getProjectCwd(), '.monomind', 'export');
+            const outDir = resolve(getProjectCwd(), requestedOut);
+            const allowedRoot = resolve(getProjectCwd());
+            if (outDir !== allowedRoot && !outDir.startsWith(allowedRoot + sep)) {
+                return text(`Error: outputPath must be within the project directory (${allowedRoot})`);
+            }
+            mkdirSync(outDir, { recursive: true });
+            if (fmt === 'json') {
+                const p = join(outDir, 'graph.json');
+                writeFileSync(p, toJson(nodes, edges));
+                return text(`Exported JSON to ${p}`);
+            }
+            if (fmt === 'svg') {
+                const p = join(outDir, 'graph.svg');
+                writeFileSync(p, toSvg(nodes, edges));
+                return text(`Exported SVG to ${p}`);
+            }
+            if (fmt === 'graphml') {
+                const p = join(outDir, 'graph.graphml');
+                writeFileSync(p, toGraphml(nodes, edges));
+                return text(`Exported GraphML to ${p}`);
+            }
+            if (fmt === 'cypher') {
+                const p = join(outDir, 'graph.cypher');
+                writeFileSync(p, toCypher(nodes, edges));
+                return text(`Exported Cypher to ${p}`);
+            }
+            if (fmt === 'obsidian') {
+                toObsidian(nodes, edges, outDir);
+                return text(`Exported Obsidian vault to ${outDir}`);
+            }
+            if (fmt === 'canvas') {
+                const p = join(outDir, 'graph.canvas');
+                writeFileSync(p, toCanvas(nodes, edges));
+                return text(`Exported Canvas to ${p}`);
+            }
+            return text(`Format ${fmt} export written to ${outDir}`);
+        }
+        finally {
+            closeDb(db);
+        }
+    },
+};
+// ── monograph_snapshot ──────────────────────────────────────────────────────
+export const monographSnapshotTool = {
+    name: 'monograph_snapshot',
+    description: 'Save current graph state to a named JSON snapshot. Use with monograph_diff to compare before/after changes.',
+    inputSchema: {
+        type: 'object',
+        properties: {
+            name: { type: 'string', description: 'Snapshot name (default: ISO timestamp). Used as the filename.' },
+        },
+    },
+    handler: async (input) => {
+        const { openDb, closeDb, snapshotFromDb } = await import('@monoes/monograph');
+        const { writeFileSync, mkdirSync } = await import('fs');
+        const { resolve: resolvePath } = await import('path');
+        const db = openDb(getDbPath());
+        try {
+            const snapshot = snapshotFromDb(db);
+            const rawName = input.name ?? new Date().toISOString().replace(/[:.]/g, '-');
+            const SAFE_NAME_RE = /^[a-zA-Z0-9_.\-]+$/;
+            if (!SAFE_NAME_RE.test(rawName))
+                return text(`Invalid snapshot name: ${rawName}`);
+            const snapshotDir = resolvePath(join(getProjectCwd(), '.monomind', 'snapshots'));
+            mkdirSync(snapshotDir, { recursive: true });
+            const outPath = join(snapshotDir, `${rawName}.json`);
+            if (!resolvePath(outPath).startsWith(snapshotDir))
+                return text(`Path traversal detected in snapshot name`);
+            writeFileSync(outPath, JSON.stringify(snapshot, null, 2));
+            return text(`Snapshot saved: ${outPath}\n  nodes: ${snapshot.nodes.length}  edges: ${snapshot.edges.length}`);
+        }
+        finally {
+            closeDb(db);
+        }
+    },
+};
+// ── monograph_diff ──────────────────────────────────────────────────────────
+export const monographDiffTool = {
+    name: 'monograph_diff',
+    description: 'Compare two named graph snapshots (saved via monograph_snapshot). Omit "after" to diff the "before" snapshot against the live graph.',
+    inputSchema: {
+        type: 'object',
+        properties: {
+            before: { type: 'string', description: 'Name of the before snapshot (without .json extension)' },
+            after: { type: 'string', description: 'Name of the after snapshot, or omit to compare against the live graph' },
+        },
+        required: ['before'],
+    },
+    handler: async (input) => {
+        const { openDb, closeDb, snapshotFromDb, diffSnapshots } = await import('@monoes/monograph');
+        const { readFileSync, existsSync, statSync: statSyncSnap } = await import('fs');
+        const { resolve: resolvePath } = await import('path');
+        const MAX_SNAPSHOT_BYTES = 100 * 1024 * 1024; // 100 MB
+        const snapshotDir = resolvePath(join(getProjectCwd(), '.monomind', 'snapshots'));
+        // Reject snapshot names containing path separators or traversal sequences
+        const SAFE_SNAPSHOT_NAME = /^[a-zA-Z0-9_.\-]+$/;
+        const beforeName = input.before;
+        if (!SAFE_SNAPSHOT_NAME.test(beforeName))
+            return text(`Invalid snapshot name: ${beforeName}`);
+        const beforePath = join(snapshotDir, `${beforeName}.json`);
+        if (!resolvePath(beforePath).startsWith(snapshotDir))
+            return text(`Path traversal detected in snapshot name`);
+        if (!existsSync(beforePath)) {
+            return text(`Snapshot not found: ${beforePath}\nCreate one first with monograph_snapshot.`);
+        }
+        if (statSyncSnap(beforePath).size > MAX_SNAPSHOT_BYTES) {
+            return text(`Snapshot too large to diff: ${beforePath}`);
+        }
+        const before = JSON.parse(readFileSync(beforePath, 'utf-8'));
+        let after;
+        if (input.after) {
+            const afterName = input.after;
+            if (!SAFE_SNAPSHOT_NAME.test(afterName))
+                return text(`Invalid snapshot name: ${afterName}`);
+            const afterPath = join(snapshotDir, `${afterName}.json`);
+            if (!resolvePath(afterPath).startsWith(snapshotDir))
+                return text(`Path traversal detected in snapshot name`);
+            if (!existsSync(afterPath))
+                return text(`Snapshot not found: ${afterPath}`);
+            if (statSyncSnap(afterPath).size > MAX_SNAPSHOT_BYTES)
+                return text(`Snapshot too large to diff: ${afterPath}`);
+            after = JSON.parse(readFileSync(afterPath, 'utf-8'));
+        }
+        else {
+            const db = openDb(getDbPath());
+            try {
+                after = snapshotFromDb(db);
+            }
+            finally {
+                closeDb(db);
+            }
+        }
+        const diff = diffSnapshots(before, after);
+        const nodeById = new Map();
+        const indexNodes = (nodes) => {
+            for (const n of nodes) {
+                if (n.id)
+                    nodeById.set(n.id, n);
+            }
+        };
+        indexNodes(before.nodes);
+        indexNodes(after.nodes);
+        const resolveEdgeEnd = (id) => {
+            const ref = nodeById.get(id);
+            if (!ref)
+                return id; // fallback to raw id if not found
+            const loc = ref.filePath ? (ref.startLine != null ? `${ref.filePath}:${ref.startLine}` : ref.filePath) : '';
+            return loc ? `${ref.name}  [${loc}]` : ref.name;
+        };
+        const section = (label, items) => items.length > 0 ? `\n${label} (${items.length}):\n${items.slice(0, 10).join('\n')}${items.length > 10 ? `\n  … ${items.length - 10} more` : ''}` : '';
+        const formatNode = (n) => {
+            const loc = n.filePath ? (n.startLine != null ? `${n.filePath}:${n.startLine}` : n.filePath) : '';
+            return `  [${n.label ?? '?'}] ${n.name ?? '?'}${loc ? `  ${loc}` : ''}`;
+        };
+        const lines = [
+            `Diff: ${diff.summary}`,
+            section('New nodes', diff.newNodes.map(n => `  + ${formatNode(n)}`)),
+            section('Removed nodes', diff.removedNodes.map(n => `  - ${formatNode(n)}`)),
+            section('New edges', diff.newEdges.map(e => `  + ${resolveEdgeEnd(e.sourceId)} --[${e.relation}]--> ${resolveEdgeEnd(e.targetId)}`)),
+            section('Removed edges', diff.removedEdges.map(e => `  - ${resolveEdgeEnd(e.sourceId)} --[${e.relation}]--> ${resolveEdgeEnd(e.targetId)}`)),
+        ].join('');
+        return text(lines);
+    },
+};
+// ── monograph_report ────────────────────────────────────────────────────────
+export const monographReportTool = {
+    name: 'monograph_report',
+    description: 'Generate a GRAPH_REPORT.md summarizing the codebase knowledge graph.',
+    inputSchema: {
+        type: 'object',
+        properties: {
+            path: { type: 'string', description: 'Output path (default: .monomind/GRAPH_REPORT.md)' },
+        },
+    },
+    handler: async (input) => {
+        const { openDb, closeDb, countNodes, countEdges } = await import('@monoes/monograph');
+        const { writeFileSync, mkdirSync } = await import('fs');
+        const db = openDb(getDbPath());
+        try {
+            const nodeCount = countNodes(db);
+            const edgeCount = countEdges(db);
+            const topNodes = db.prepare(`
+        SELECT n.name, n.label, n.file_path, n.start_line,
+               COUNT(DISTINCT e1.id) + COUNT(DISTINCT e2.id) AS degree
+        FROM nodes n
+        LEFT JOIN edges e1 ON e1.source_id = n.id
+        LEFT JOIN edges e2 ON e2.target_id = n.id
+        WHERE n.label NOT IN ('File','Folder','Community','Concept')
+        GROUP BY n.id ORDER BY degree DESC LIMIT 10
+      `).all();
+            const report = [
+                '# Graph Report\n',
+                `**Generated:** ${new Date().toISOString()}`,
+                `**Nodes:** ${nodeCount}  **Edges:** ${edgeCount}\n`,
+                '## Top 10 Most Connected Entities\n',
+                ...topNodes.map((n, i) => {
+                    const loc = n.file_path ? (n.start_line != null ? `${n.file_path}:${n.start_line}` : n.file_path) : '';
+                    return `${i + 1}. **${n.name}** (${n.label}) — degree ${n.degree}${loc ? `  \`${loc}\`` : ''}`;
+                }),
+            ].join('\n');
+            const rawOutPath = input.path ?? join(getProjectCwd(), '.monomind', 'GRAPH_REPORT.md');
+            const outPath = resolve(getProjectCwd(), rawOutPath);
+            const allowedRoot = resolve(getProjectCwd());
+            if (outPath !== allowedRoot && !outPath.startsWith(allowedRoot + sep)) {
+                return text(`Error: path must be within the project directory (${allowedRoot})`);
+            }
+            mkdirSync(join(outPath, '..'), { recursive: true });
+            writeFileSync(outPath, report);
+            return text(`${report}\n\nReport written to ${outPath}`);
+        }
+        finally {
+            closeDb(db);
+        }
+    },
+};
+// ── monograph_wiki ──────────────────────────────────────────────────────────
+export const monographWikiTool = {
+    name: 'monograph_wiki',
+    description: 'Retrieve LLM-generated wiki pages for code communities. Returns one page by communityId or all pages if no filter provided.',
+    inputSchema: {
+        type: 'object',
+        properties: {
+            communityId: { type: 'string', description: 'Community ID to retrieve (omit to list all pages)' },
+        },
+    },
+    handler: async (input) => {
+        const { openDb, closeDb } = await import('@monoes/monograph');
+        const { getWikiToolResult } = await import('@monoes/monograph');
+        const db = openDb(getDbPath());
+        try {
+            const result = getWikiToolResult(db, { communityId: input.communityId });
+            if (result.pages.length === 0) {
+                return text('No wiki pages found. Run monograph_wiki_build to generate community wiki pages.');
+            }
+            // Return pages as readable prose — content is already LLM-generated markdown.
+            const sections = result.pages.map(p => `--- Community ${p.communityId} ---\n${p.content}`);
+            return text(sections.join('\n\n'));
+        }
+        finally {
+            closeDb(db);
+        }
+    },
+};
+// ── monograph_wiki_build ────────────────────────────────────────────────────
+export const monographWikiBuildTool = {
+    name: 'monograph_wiki_build',
+    description: 'Generate wiki pages for code communities using Claude Code CLI (no API key needed — reuses Claude Code auth).',
+    inputSchema: {
+        type: 'object',
+        properties: {
+            communityId: { type: 'string', description: 'Only generate for this community ID (omit for all communities)' },
+            force: { type: 'boolean', description: 'Regenerate even if page already exists (default false)' },
+            model: { type: 'string', description: 'Anthropic model to use (default: claude-haiku-4-5-20251001)' },
+        },
+    },
+    handler: async (input) => {
+        const { openDb, closeDb } = await import('@monoes/monograph');
+        const { runWikiBuildTool } = await import('@monoes/monograph');
+        const db = openDb(getDbPath());
+        try {
+            const result = await runWikiBuildTool(db, {
+                communityId: input.communityId,
+                force: input.force,
+                model: input.model,
+            });
+            if (result.error)
+                return text(`Wiki build failed: ${result.error}`);
+            const parts = [];
+            if (result.generated != null)
+                parts.push(`${result.generated} page(s) generated`);
+            if (result.skipped != null && result.skipped > 0)
+                parts.push(`${result.skipped} skipped (already exist)`);
+            if (result.errors != null && result.errors > 0)
+                parts.push(`${result.errors} error(s)`);
+            return text(`Wiki build complete: ${parts.join(', ') || 'nothing to do'}. Use monograph_wiki to read the pages.`);
+        }
+        finally {
+            closeDb(db);
+        }
+    },
+};
+// ── monograph_serve ─────────────────────────────────────────────────────────
+export const monographServeTool = {
+    name: 'monograph_serve',
+    description: 'Start a web UI server that visualizes the knowledge graph interactively using Sigma.js. Returns the URL where the dashboard is accessible.',
+    inputSchema: {
+        type: 'object',
+        properties: {
+            port: { type: 'number', description: 'Port to listen on (default 7374)' },
+            open: { type: 'boolean', description: 'Open the URL in the default browser after starting (default false)' },
+        },
+    },
+    handler: async (input) => {
+        const { openDb } = await import('@monoes/monograph');
+        const { serveMonograph } = await import('@monoes/monograph');
+        const db = openDb(getDbPath());
+        const result = await serveMonograph({
+            port: input.port ?? 7374,
+            open: input.open ?? false,
+            db,
+        });
+        return text(`Monograph web UI ${result.status === 'already_running' ? 'already running' : 'started'} at ${result.url}`);
+    },
+};
+//# sourceMappingURL=visualize-tools.js.map

package/dist/src/mcp-tools/monograph/visualize-tools.js.map

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package/dist/src/mcp-tools/monograph-tools.d.ts

@@ -1,27 +1,8 @@
 /**
- * Monograph MCP Tools
+ * Monograph MCP Tools — backward-compatibility barrel.
  *
- * Native TypeScript code intelligence — replaces Python graphify.
- * All monograph_* tools are backed by @monoes/monograph package.
+ * All tool definitions live in ./monograph/ subdirectory.
+ * This file re-exports the public API for existing importers.
  */
-import type { MCPTool } from './types.js';
-/**
- * BM25 ranks purely on literal keyword overlap, so a doc/concept node whose
- * prose happens to mention task-related words (e.g. a report mentioning
- * "retry" constants) can outrank the actual code symbol the task is really
- * about, which is conceptually related but lexically different (issue #38).
- * Prefer code-symbol hits (Function/Class/Method/...) over doc-type hits
- * (Document/Concept/Section/...) when there are any, falling back to the
- * full hit list so a genuinely doc-only task still gets results.
- */
-export declare function preferSymbolHits<T extends {
-    label: string;
-}>(hits: T[], symbolLabels: ReadonlySet<string>): T[];
-/**
- * Full tool list regardless of gating — used by the graphify compat shims,
- * which must resolve targets (e.g. monograph_community) even when the
- * advanced set is not exposed over MCP.
- */
-export declare const allMonographTools: MCPTool[];
-export declare const monographTools: MCPTool[];
+export { monographTools, allMonographTools, preferSymbolHits } from './monograph/index.js';
 //# sourceMappingURL=monograph-tools.d.ts.map

package/dist/src/mcp-tools/monograph-tools.d.ts.map

@@ -1 +1 @@
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