@monoes/monomindcli 2.16.4 → 2.16.6

package/dist/src/init/write-runtime-config.js

@@ -4,6 +4,7 @@
 import * as fs from 'node:fs';
 import * as path from 'node:path';
 import { MONOMIND_NEVER_COMMIT } from './never-commit.js';
+import { mergeGitignoreBlock, mergeYamlDefaults } from './runtime-config-merge.js';
 import { atomicWriteFile, MAX_EXEC_FILE_BYTES, writeGeneratedFile } from './shared.js';
 import { writeCapabilitiesDoc } from './write-capabilities.js';
 export { MONOMIND_NEVER_COMMIT };
@@ -31,10 +32,61 @@ export const MONOMIND_GITIGNORE_SPECIFIC_EXCLUDES = [
  */
 export async function writeRuntimeConfig(targetDir, options, result) {
     const configPath = path.join(targetDir, '.monomind', 'config.yaml');
-    if (fs.existsSync(configPath) && !options.force) {
+    // No early return when config.yaml is kept: the .gitignore coverage below
+    // must still reach projects that already have one (it never did).
+    const configExists = fs.existsSync(configPath);
+    if (configExists && !options.force) {
         result.skipped.push('.monomind/config.yaml');
-        return;
     }
+    else {
+        writeConfigYaml(configPath, configExists, options, result);
+    }
+    writeMonomindGitignore(targetDir, options, result);
+    // Ensure the project-level .gitignore does NOT blanket-ignore .monomind/
+    // A blanket ignore prevents config, metrics, and knowledge graph from being committed.
+    // We remove any bare `.monomind/` or `**/.monomind/` lines and add specific excludes instead —
+    // i-066: but ONLY when the replacement is a strict superset of what the
+    // blanket line already covered. A blanket `.monomind/` ignores every
+    // current and future path under the directory; a finite specific list can
+    // never be a superset of that (unless it also contains a blanket-shaped
+    // entry itself), so with today's list this never fires — the user's
+    // existing blanket coverage is left alone rather than narrowed. This was
+    // the actual regression: the old unconditional strip could uncover
+    // .monomind/monoes-connection.json (the monoes.me refresh token) for any
+    // user who had sensibly blanket-ignored .monomind/.
+    const projectGitignorePath = path.join(targetDir, '.gitignore');
+    if (fs.existsSync(projectGitignorePath) &&
+        fs.statSync(projectGitignorePath).size <= MAX_EXEC_FILE_BYTES) {
+        const existing = fs.readFileSync(projectGitignorePath, 'utf-8');
+        const blanketPattern = /^(\*\*\/)?\.monomind\/?\s*$/gm;
+        const specificExcludes = MONOMIND_GITIGNORE_SPECIFIC_EXCLUDES;
+        const replacementIsBlanketEquivalent = specificExcludes.some((line) => /^\.monomind\/\*{1,2}\/?$/.test(line.trim()));
+        if (blanketPattern.test(existing) && replacementIsBlanketEquivalent) {
+            const fixed = existing
+                .split('\n')
+                .filter((line) => !/^(\*\*\/)?\.monomind\/?\s*$/.test(line))
+                .join('\n');
+            atomicWriteFile(projectGitignorePath, `${fixed.trimEnd()}\n${specificExcludes.join('\n')}\n`);
+            result.updated.push('.gitignore (replaced blanket .monomind/ ignore with specific excludes)');
+        }
+    }
+    // i-066 §3.5 leak warning: not here, and not in write-claude.ts's
+    // writeMCPConfig() either anymore (follow-up finding 9 [MAJOR]). It now
+    // lives in executor.ts, unconditionally, ahead of every component block —
+    // not because it runs "before writeMCPConfig" (an ordering between two
+    // conditional calls, which is exactly the assumption that produced
+    // finding 9: writeMCPConfig only runs when options.components.mcp is
+    // set, so an ordering claim relative to it is false on any run where
+    // that flag is off). The true property is that the check runs before any
+    // component block, regardless of which components are selected, so it
+    // still sees every leaked .mcp.json before anything in this function's
+    // family could migrate or overwrite it. See executor.ts:188.
+    // Write CAPABILITIES.md with full system overview
+    await writeCapabilitiesDoc(targetDir, options, result);
+}
+/** Writes config.yaml, or under --force fills in only the defaults the
+ *  user's file lacks — a wholesale rewrite discarded their settings. */
+function writeConfigYaml(configPath, exists, options, result) {
     const config = `# Monomind Runtime Configuration
 # Generated: ${new Date().toISOString()}
 
@@ -72,22 +124,26 @@ mcp:
   autoStart: ${options.mcp.autoStart}
   port: ${options.mcp.port}
 `;
-    writeGeneratedFile(configPath, config);
-    result.created.files.push('.monomind/config.yaml');
-    // Write .monomind/.gitignore.
-    const gitignorePath = path.join(targetDir, '.monomind', '.gitignore');
-    if (!fs.existsSync(gitignorePath) || options.force) {
-        // i-052 §2(ii) — deny-by-default for FRESH projects. Three
-        // independently-maintained denylists (this file's old body,
-        // MONOMIND_GITIGNORE_SPECIFIC_EXCLUDES, and doctor's
-        // REQUIRED_GITIGNORE_PATTERNS) all separately omitted `dashboard-token`
-        // — a denylist can always miss its next dangerous entry. Ignoring
-        // everything under .monomind/ and explicitly un-ignoring only what's
-        // genuinely meant to be shared means a file monomind starts writing
-        // tomorrow is protected by construction, with no list to remember to
-        // update. Order matters for git's "can't re-include inside an excluded
-        // parent" rule: `!orgs/` must precede any `!orgs/<org>.json` line.
-        const gitignore = `# Monomind — deny by default, allow-list what's meant to be committed.
+    // The merged file keeps the user's header; carry the fresh stamp into it so
+    // a real change is dated (writeGeneratedFile skips a stamp-only change).
+    const stamp = /Generated: \S+/.exec(config)?.[0] ?? '';
+    const merged = exists
+        ? mergeYamlDefaults(fs.readFileSync(configPath, 'utf-8'), config).replace(/Generated: \S+/, () => stamp)
+        : config;
+    writeGeneratedFile(configPath, merged);
+    result.created.files.push(exists ? '.monomind/config.yaml (merged defaults)' : '.monomind/config.yaml');
+}
+// i-052 §2(ii) — deny-by-default for FRESH projects. Three
+// independently-maintained denylists (this file's old body,
+// MONOMIND_GITIGNORE_SPECIFIC_EXCLUDES, and doctor's
+// REQUIRED_GITIGNORE_PATTERNS) all separately omitted `dashboard-token`
+// — a denylist can always miss its next dangerous entry. Ignoring
+// everything under .monomind/ and explicitly un-ignoring only what's
+// genuinely meant to be shared means a file monomind starts writing
+// tomorrow is protected by construction, with no list to remember to
+// update. Order matters for git's "can't re-include inside an excluded
+// parent" rule: `!orgs/` must precede any `!orgs/<org>.json` line.
+const MONOMIND_GITIGNORE_TEMPLATE = `# Monomind — deny by default, allow-list what's meant to be committed.
 # See doc/privacy.md and i-052: a curated denylist can always miss its
 # next dangerous entry (this repo shipped a live credential leak because
 # three separate ones did). Ignoring everything and un-ignoring only what
@@ -120,72 +176,43 @@ mcp:
 # default would be a larger privacy regression than the credential this
 # item exists to fix.
 `;
-        atomicWriteFile(gitignorePath, gitignore);
+/** Writes .monomind/.gitignore. The template lives inside a managed block so
+ *  --force refreshes only that block: users are told to add
+ *  `!orgs/<org>.json` lines, and regenerating the whole file deleted them. */
+function writeMonomindGitignore(targetDir, options, result) {
+    const gitignorePath = path.join(targetDir, '.monomind', '.gitignore');
+    const exists = fs.existsSync(gitignorePath);
+    if (!exists || options.force) {
+        const existing = exists ? fs.readFileSync(gitignorePath, 'utf-8') : '';
+        const merged = mergeGitignoreBlock(existing, MONOMIND_GITIGNORE_TEMPLATE);
+        if (merged !== existing)
+            atomicWriteFile(gitignorePath, merged);
         result.created.files.push('.monomind/.gitignore');
+        return;
     }
-    else {
-        // i-066 reviewer finding 3, generalised for i-052: a project inited
-        // BEFORE a MONOMIND_NEVER_COMMIT entry existed keeps its old
-        // .monomind/.gitignore forever unless --force is passed, and none of
-        // that file's original patterns (*.key, *.token, *.secret, .env) match
-        // an extensionless or otherwise-shaped file like `dashboard-token`.
-        // Make the fix additive: append every currently-missing entry even on
-        // a non-forced re-init, content-guarded per line so a second run is a
-        // no-op and existing entries are never duplicated. This one loop is
-        // what originally only covered monoes-connection.json (i-066) — turned
-        // from a single hardcoded line into a list so a future
-        // MONOMIND_NEVER_COMMIT addition reaches the installed base too,
-        // without a fourth hand-written append site.
-        const existingGitignore = fs.readFileSync(gitignorePath, 'utf-8');
-        const existingLines = new Set(existingGitignore.split('\n').map((line) => line.trim()));
-        const missing = MONOMIND_NEVER_COMMIT.filter(({ file }) => !existingLines.has(file));
-        if (missing.length > 0) {
-            const appendLines = missing.map(({ file, reason }) => `# ${reason}\n${file}`).join('\n');
-            atomicWriteFile(gitignorePath, `${existingGitignore.trimEnd()}\n${appendLines}\n`);
-            result.updated.push(`.monomind/.gitignore (added ${missing.map(({ file }) => file).join(', ')} coverage)`);
-        }
-    }
-    // Ensure the project-level .gitignore does NOT blanket-ignore .monomind/
-    // A blanket ignore prevents config, metrics, and knowledge graph from being committed.
-    // We remove any bare `.monomind/` or `**/.monomind/` lines and add specific excludes instead —
-    // i-066: but ONLY when the replacement is a strict superset of what the
-    // blanket line already covered. A blanket `.monomind/` ignores every
-    // current and future path under the directory; a finite specific list can
-    // never be a superset of that (unless it also contains a blanket-shaped
-    // entry itself), so with today's list this never fires — the user's
-    // existing blanket coverage is left alone rather than narrowed. This was
-    // the actual regression: the old unconditional strip could uncover
-    // .monomind/monoes-connection.json (the monoes.me refresh token) for any
-    // user who had sensibly blanket-ignored .monomind/.
-    const projectGitignorePath = path.join(targetDir, '.gitignore');
-    if (fs.existsSync(projectGitignorePath) &&
-        fs.statSync(projectGitignorePath).size <= MAX_EXEC_FILE_BYTES) {
-        const existing = fs.readFileSync(projectGitignorePath, 'utf-8');
-        const blanketPattern = /^(\*\*\/)?\.monomind\/?\s*$/gm;
-        const specificExcludes = MONOMIND_GITIGNORE_SPECIFIC_EXCLUDES;
-        const replacementIsBlanketEquivalent = specificExcludes.some((line) => /^\.monomind\/\*{1,2}\/?$/.test(line.trim()));
-        if (blanketPattern.test(existing) && replacementIsBlanketEquivalent) {
-            const fixed = existing
-                .split('\n')
-                .filter((line) => !/^(\*\*\/)?\.monomind\/?\s*$/.test(line))
-                .join('\n');
-            atomicWriteFile(projectGitignorePath, `${fixed.trimEnd()}\n${specificExcludes.join('\n')}\n`);
-            result.updated.push('.gitignore (replaced blanket .monomind/ ignore with specific excludes)');
-        }
+    // i-066 reviewer finding 3, generalised for i-052: a project inited
+    // BEFORE a MONOMIND_NEVER_COMMIT entry existed keeps its old
+    // .monomind/.gitignore forever unless --force is passed, and none of
+    // that file's original patterns (*.key, *.token, *.secret, .env) match
+    // an extensionless or otherwise-shaped file like `dashboard-token`.
+    // Make the fix additive: append every currently-missing entry even on
+    // a non-forced re-init, content-guarded per line so a second run is a
+    // no-op and existing entries are never duplicated. This one loop is
+    // what originally only covered monoes-connection.json (i-066) — turned
+    // from a single hardcoded line into a list so a future
+    // MONOMIND_NEVER_COMMIT addition reaches the installed base too,
+    // without a fourth hand-written append site.
+    const existingGitignore = fs.readFileSync(gitignorePath, 'utf-8');
+    const existingLines = new Set(existingGitignore.split('\n').map((line) => line.trim()));
+    // A deny-by-default file (a bare `*`) already ignores every one of them.
+    if (existingLines.has('*'))
+        return;
+    const missing = MONOMIND_NEVER_COMMIT.filter(({ file }) => !existingLines.has(file));
+    if (missing.length > 0) {
+        const appendLines = missing.map(({ file, reason }) => `# ${reason}\n${file}`).join('\n');
+        atomicWriteFile(gitignorePath, `${existingGitignore.trimEnd()}\n${appendLines}\n`);
+        result.updated.push(`.monomind/.gitignore (added ${missing.map(({ file }) => file).join(', ')} coverage)`);
     }
-    // i-066 §3.5 leak warning: not here, and not in write-claude.ts's
-    // writeMCPConfig() either anymore (follow-up finding 9 [MAJOR]). It now
-    // lives in executor.ts, unconditionally, ahead of every component block —
-    // not because it runs "before writeMCPConfig" (an ordering between two
-    // conditional calls, which is exactly the assumption that produced
-    // finding 9: writeMCPConfig only runs when options.components.mcp is
-    // set, so an ordering claim relative to it is false on any run where
-    // that flag is off). The true property is that the check runs before any
-    // component block, regardless of which components are selected, so it
-    // still sees every leaked .mcp.json before anything in this function's
-    // family could migrate or overwrite it. See executor.ts:188.
-    // Write CAPABILITIES.md with full system overview
-    await writeCapabilitiesDoc(targetDir, options, result);
 }
 /**
  * Write initial metrics files for statusline

package/dist/src/init/write-runtime-config.js.map

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package/dist/src/knowledge/eval/golden-set.js

@@ -807,11 +807,6 @@ GOLDEN_SET.push({
     query: 'kick off a saved multi stage run from a template then check on it and stop it',
     relevant: ['packages/@monomind/cli/.claude/commands/workflows/README.md'],
     tags: ['b0'],
-}, {
-    id: 'b0-ticket-pileup',
-    query: 'work through a backlog of open tickets spotting near identical ones and the ones nobody has touched in a month',
-    relevant: ['packages/@monomind/cli/.claude/skills/github-issue-triage/SKILL.md'],
-    tags: ['b0'],
 }, {
     id: 'b0-capture-session-file',
     query: 'keep a moving picture of what the automated browser did so a failure can be replayed later',
@@ -1081,11 +1076,6 @@ GOLDEN_SET.push({
     query: 'a ready made staged pipeline that goes from planning to writing to checking to joining it all up',
     relevant: ['packages/@monomind/cli/.claude/commands/workflows/development.md'],
     tags: ['b1'],
-}, {
-    id: 'b1-team-snapshot',
-    query: 'produce a shareable roundup of whats open and whats shipped lately to paste into the team chat',
-    relevant: ['packages/@monomind/cli/.claude/skills/github-repo-recap/SKILL.md'],
-    tags: ['b1'],
 }, {
     id: 'b1-shortest-thing',
     query: 'quit gold plating and hand me the smallest thing that does the job',
@@ -4293,11 +4283,6 @@ GOLDEN_SET.push({
     query: 'how do I coordinate a group of parallel AI workers with shared state and checkpoints',
     relevant: ['packages/@monomind/cli/.claude/skills/monoswarm/SKILL.md'],
     tags: ['c3-lo2'],
-}, {
-    id: 'c3lo2-sorting-hat',
-    query: 'how does the system automatically categorize and prioritize incoming bug reports',
-    relevant: ['packages/@monomind/cli/.claude/skills/github-issue-triage/SKILL.md'],
-    tags: ['c3-lo2'],
 }, {
     id: 'c3lo2-collective-brain',
     query: 'how do multiple autonomous helpers pool their findings into a shared understanding',