@monoes/monomindcli 2.16.4 → 2.16.6

package/dist/src/init/helpers-generator.js

@@ -1343,6 +1343,15 @@ export const HELPER_FILES = {
     'pre-commit': { generate: generatePreCommitHook },
     'post-commit': { generate: generatePostCommitHook },
 };
+/**
+ * Permissions for a helper file, the same from `init` and `init upgrade`.
+ * Every .cjs/.js helper is run as `node <file>` (hooks, statusline, the codex
+ * and opencode bridges), so only what is executed directly is 0755: shell
+ * scripts, .mjs entry points (shebang) and the extensionless git hooks.
+ */
+export function helperFileMode(name) {
+    return /\.(sh|mjs)$/.test(name) || !/\.[^./]+$/.test(name) ? 0o755 : 0o644;
+}
 export const FORCE_SYNC_HELPERS = Object.keys(HELPER_FILES).filter((name) => HELPER_FILES[name].forceSync);
 export const DOCTOR_TRACKED_HELPERS = Object.keys(HELPER_FILES).filter((name) => HELPER_FILES[name].doctorTracked);
 // Helper file names this product shipped in the past under a name it no

package/dist/src/init/helpers-generator.js.map

@@ -1 +1 @@
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package/dist/src/init/init-memory.d.ts

@@ -5,10 +5,20 @@
  * it to `.claude/memory.db` — but idempotently: an existing database is left
  * exactly as it is, never recreated.
  */
+import type { MemorySeed } from './shared-instructions-generator.js';
 import type { InitMemoryResult } from './types.js';
 export declare function initProjectMemory(cwd: string, options: {
     syncToClaude: boolean;
 }): Promise<InitMemoryResult>;
+/**
+ * Store the seeds shared_instructions generation detected, in-process, in
+ * `targetDir`'s memory store — the one `monomind memory store` run there
+ * writes to, which the bridge resolves from MONOMIND_CWD (else the cwd), so
+ * it is pinned to `targetDir` for the duration. Best-effort; returns how
+ * many were stored. No embeddings are computed, so init neither loads a
+ * model nor goes online.
+ */
+export declare function seedProjectMemory(targetDir: string, seeds: readonly MemorySeed[]): Promise<number>;
 /** Print the outcome; a failure is a warning with the fix, never an error. */
 export declare function reportProjectMemory(memory: InitMemoryResult | undefined): void;
 //# sourceMappingURL=init-memory.d.ts.map

package/dist/src/init/init-memory.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init-memory.d.ts","sourceRoot":"","sources":["../../../src/init/init-memory.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAMH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,oCAAoC,CAAC;AACrE,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAEnD,wBAAsB,iBAAiB,CACrC,GAAG,EAAE,MAAM,EACX,OAAO,EAAE;IAAE,YAAY,EAAE,OAAO,CAAA;CAAE,GACjC,OAAO,CAAC,gBAAgB,CAAC,CAoB3B;AAMD;;;;;;;GAOG;AACH,wBAAsB,iBAAiB,CACrC,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,SAAS,UAAU,EAAE,GAC3B,OAAO,CAAC,MAAM,CAAC,CAyBjB;AAED,8EAA8E;AAC9E,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,gBAAgB,GAAG,SAAS,GAAG,IAAI,CAQ9E"}

package/dist/src/init/init-memory.js

@@ -7,7 +7,7 @@
  */
 import * as fs from 'node:fs';
 import * as path from 'node:path';
-import { initializeMemoryDatabase } from '../memory/memory-initializer.js';
+import { initializeMemoryDatabase, storeEntry } from '../memory/memory-initializer.js';
 import { output } from '../output.js';
 export async function initProjectMemory(cwd, options) {
     const dbPath = path.join(cwd, '.swarm', 'memory.db');
@@ -31,6 +31,49 @@ export async function initProjectMemory(cwd, options) {
         return { status: 'failed', dbPath, error: e instanceof Error ? e.message : String(e) };
     }
 }
+// Seed keys come from package.json's `name`; keep them to a plain shape.
+const SEED_KEY = /^[a-zA-Z0-9._:/-]{1,128}$/;
+const SEED_NAMESPACE = /^[a-zA-Z0-9_-]{1,64}$/;
+/**
+ * Store the seeds shared_instructions generation detected, in-process, in
+ * `targetDir`'s memory store — the one `monomind memory store` run there
+ * writes to, which the bridge resolves from MONOMIND_CWD (else the cwd), so
+ * it is pinned to `targetDir` for the duration. Best-effort; returns how
+ * many were stored. No embeddings are computed, so init neither loads a
+ * model nor goes online.
+ */
+export async function seedProjectMemory(targetDir, seeds) {
+    const previousCwd = process.env.MONOMIND_CWD;
+    process.env.MONOMIND_CWD = targetDir;
+    let stored = 0;
+    try {
+        for (const { key, value, namespace } of seeds) {
+            if (!SEED_KEY.test(key) || !SEED_NAMESPACE.test(namespace))
+                continue;
+            try {
+                const result = await storeEntry({
+                    key,
+                    value,
+                    namespace,
+                    generateEmbeddingFlag: false,
+                    upsert: true,
+                });
+                if (result.success)
+                    stored++;
+            }
+            catch {
+                // Non-critical — memory seeding is best-effort
+            }
+        }
+    }
+    finally {
+        if (previousCwd === undefined)
+            delete process.env.MONOMIND_CWD;
+        else
+            process.env.MONOMIND_CWD = previousCwd;
+    }
+    return stored;
+}
 /** Print the outcome; a failure is a warning with the fix, never an error. */
 export function reportProjectMemory(memory) {
     if (memory?.status === 'created')

package/dist/src/init/init-memory.js.map

@@ -1 +1 @@
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+{"version":3,"file":"init-memory.js","sourceRoot":"","sources":["../../../src/init/init-memory.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,EAAE,wBAAwB,EAAE,UAAU,EAAE,MAAM,iCAAiC,CAAC;AACvF,OAAO,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AAItC,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,GAAW,EACX,OAAkC;IAElC,MAAM,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,QAAQ,EAAE,WAAW,CAAC,CAAC;IACrD,IAAI,MAAM,GAA+B,UAAU,CAAC;IACpD,IAAI,CAAC;QACH,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;YAC3B,MAAM,MAAM,GAAG,MAAM,wBAAwB,CAAC,EAAE,MAAM,EAAE,CAAC,CAAC;YAC1D,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;gBACpB,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,CAAC,KAAK,IAAI,gBAAgB,EAAE,CAAC;YAC/E,CAAC;YACD,MAAM,GAAG,SAAS,CAAC;QACrB,CAAC;QACD,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,WAAW,CAAC,CAAC;QAC5D,IAAI,OAAO,CAAC,YAAY,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,YAAY,CAAC,EAAE,CAAC;YACzD,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;YAC9D,EAAE,CAAC,YAAY,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC;QACxC,CAAC;QACD,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC;IAC5B,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC;IACzF,CAAC;AACH,CAAC;AAED,yEAAyE;AACzE,MAAM,QAAQ,GAAG,2BAA2B,CAAC;AAC7C,MAAM,cAAc,GAAG,uBAAuB,CAAC;AAE/C;;;;;;;GAOG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,SAAiB,EACjB,KAA4B;IAE5B,MAAM,WAAW,GAAG,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC;IAC7C,OAAO,CAAC,GAAG,CAAC,YAAY,GAAG,SAAS,CAAC;IACrC,IAAI,MAAM,GAAG,CAAC,CAAC;IACf,IAAI,CAAC;QACH,KAAK,MAAM,EAAE,GAAG,EAAE,KAAK,EAAE,SAAS,EAAE,IAAI,KAAK,EAAE,CAAC;YAC9C,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,SAAS,CAAC;gBAAE,SAAS;YACrE,IAAI,CAAC;gBACH,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC;oBAC9B,GAAG;oBACH,KAAK;oBACL,SAAS;oBACT,qBAAqB,EAAE,KAAK;oBAC5B,MAAM,EAAE,IAAI;iBACb,CAAC,CAAC;gBACH,IAAI,MAAM,CAAC,OAAO;oBAAE,MAAM,EAAE,CAAC;YAC/B,CAAC;YAAC,MAAM,CAAC;gBACP,+CAA+C;YACjD,CAAC;QACH,CAAC;IACH,CAAC;YAAS,CAAC;QACT,IAAI,WAAW,KAAK,SAAS;YAAE,OAAO,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC;;YAC1D,OAAO,CAAC,GAAG,CAAC,YAAY,GAAG,WAAW,CAAC;IAC9C,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,8EAA8E;AAC9E,MAAM,UAAU,mBAAmB,CAAC,MAAoC;IACtE,IAAI,MAAM,EAAE,MAAM,KAAK,SAAS;QAAE,MAAM,CAAC,SAAS,CAAC,+BAA+B,CAAC,CAAC;IACpF,IAAI,MAAM,EAAE,MAAM,KAAK,UAAU;QAAE,MAAM,CAAC,SAAS,CAAC,0CAA0C,CAAC,CAAC;IAChG,IAAI,MAAM,EAAE,MAAM,KAAK,QAAQ,EAAE,CAAC;QAChC,MAAM,CAAC,YAAY,CACjB,oCAAoC,MAAM,CAAC,KAAK,yCAAyC,CAC1F,CAAC;IACJ,CAAC;AACH,CAAC"}

package/dist/src/init/managed-block.d.ts

@@ -22,7 +22,7 @@
  * Every path is idempotent: a second run matches case 2 and rewrites byte-for-
  * byte identical content. Content outside the block is never touched.
  *
- * The delimiter text is deliberately NOT the `# monomind:start <name>`
+ * The delimiter text is deliberately NOT the `monomind:start <name>`
  * convention platform-adapters/merge.ts uses for its own instruction blocks:
  * that text is also matched, none too precisely, by the legacy bare-block
  * migration regexes in platform-adapters/migration.ts, which would treat a
@@ -40,5 +40,7 @@ export declare function dropLegacyUnmarked(text: string, generated: string): str
  * platform-adapters/merge.ts for the skill writer (GH #286).
  */
 export declare function replaceLegacyUnmarked(text: string, generated: string, block: string): string | null;
+/** The body of the current-form `marker` block in `text`, or null if absent. */
+export declare function readGeneratedBlock(text: string, marker: string): string | null;
 export declare function mergeGeneratedBlock(existing: string, marker: string, generated: string): string;
 //# sourceMappingURL=managed-block.d.ts.map

package/dist/src/init/managed-block.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"managed-block.d.ts","sourceRoot":"","sources":["../../../src/init/managed-block.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AA+HH;;;;;;;;;;;;;;;;;;;;;;;;;;;GA2BG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CAU1E;AAED;;;;;;GAMG;AACH,wBAAgB,qBAAqB,CACnC,IAAI,EAAE,MAAM,EACZ,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,MAAM,GACZ,MAAM,GAAG,IAAI,CAQf;AAED,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CA0B/F"}
+{"version":3,"file":"managed-block.d.ts","sourceRoot":"","sources":["../../../src/init/managed-block.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AA+HH;;;;;;;;;;;;;;;;;;;;;;;;;;;GA2BG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CAU1E;AAED;;;;;;GAMG;AACH,wBAAgB,qBAAqB,CACnC,IAAI,EAAE,MAAM,EACZ,SAAS,EAAE,MAAM,EACjB,KAAK,EAAE,MAAM,GACZ,MAAM,GAAG,IAAI,CAQf;AAED,gFAAgF;AAChF,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAI9E;AAED,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,CA0B/F"}

package/dist/src/init/managed-block.js

@@ -35,7 +35,7 @@ function currentBlockPattern(marker) {
 function legacyMarkerPattern(marker) {
     const escaped = escapeForBlockMarker(marker);
     const commentPrefix = '(?:(?:#|//)\\s*|<!--\\s*)?';
-    const suffix = '\\s*(?:-->)?[^\\S\\r\\n]*(?:\\r?\\n|$)';
+    const suffix = '[^\\S\\r\\n]*(?:-->)?[^\\S\\r\\n]*(?:\\r?\\n|$)';
     return new RegExp(`^[\\t ]*${commentPrefix}monomind:start\\s+${escaped}${suffix}[\\s\\S]*?^[\\t ]*${commentPrefix}monomind:end\\s+${escaped}${suffix}`, 'm');
 }
 /** Opens or closes a fenced code block (``` or ~~~). */
@@ -136,7 +136,7 @@ function findLegacyUnmarkedRange(lines, generated) {
  * Every path is idempotent: a second run matches case 2 and rewrites byte-for-
  * byte identical content. Content outside the block is never touched.
  *
- * The delimiter text is deliberately NOT the `# monomind:start <name>`
+ * The delimiter text is deliberately NOT the `monomind:start <name>`
  * convention platform-adapters/merge.ts uses for its own instruction blocks:
  * that text is also matched, none too precisely, by the legacy bare-block
  * migration regexes in platform-adapters/migration.ts, which would treat a
@@ -175,6 +175,13 @@ export function replaceLegacyUnmarked(text, generated, block) {
     lines.splice(range.start, range.end - range.start, ...blockLines);
     return lines.join('\n');
 }
+/** The body of the current-form `marker` block in `text`, or null if absent. */
+export function readGeneratedBlock(text, marker) {
+    const match = currentBlockPattern(marker).exec(text);
+    if (!match)
+        return null;
+    return match[0].replace(/\n$/, '').split('\n').slice(1, -1).join('\n');
+}
 export function mergeGeneratedBlock(existing, marker, generated) {
     const block = buildBlock(marker, generated);
     if (existing.length === 0)

package/dist/src/init/managed-block.js.map

@@ -1 +1 @@
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package/dist/src/init/mcp-generator.d.ts

@@ -6,6 +6,15 @@
 import { buildMonoesMcpEntry } from '../mcp/monoes-mcp-entry.mjs';
 import type { InitOptions } from './types.js';
 export { buildMonoesMcpEntry };
+/**
+ * `existing` .mcp.json text with `generated`'s servers merged in, or null when
+ * `existing` is not a JSON object. Only monomind's entries change: servers the
+ * generator emits replace their namesakes (the tokenless monoes entry is how a
+ * leaked token is migrated away), except `monomind`, whose command/args are
+ * refreshed while every other field and env value the user set is kept. Other
+ * servers and top-level keys are untouched.
+ */
+export declare function mergeMCPJson(existing: string, generated: string): string | null;
 /**
  * Generate MCP configuration
  */

package/dist/src/init/mcp-generator.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"mcp-generator.d.ts","sourceRoot":"","sources":["../../../src/init/mcp-generator.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAUH,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAC;AAElE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAE9C,OAAO,EAAE,mBAAmB,EAAE,CAAC;AAE/B;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAiD9D;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAG5D;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,EAAE,CAOlE;AAED;;GAEG;AACH,wBAAgB,uBAAuB,IAAI;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,CAW5E"}
+{"version":3,"file":"mcp-generator.d.ts","sourceRoot":"","sources":["../../../src/init/mcp-generator.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAUH,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAC;AAElE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAE9C,OAAO,EAAE,mBAAmB,EAAE,CAAC;AAE/B;;;;;;;GAOG;AACH,wBAAgB,YAAY,CAAC,QAAQ,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAkB/E;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAiD9D;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,CAG5D;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,WAAW,GAAG,MAAM,EAAE,CAOlE;AAED;;GAEG;AACH,wBAAgB,uBAAuB,IAAI;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAA;CAAE,CAW5E"}

package/dist/src/init/mcp-generator.js

@@ -14,6 +14,34 @@ import path from 'node:path';
 import { buildMonoesMcpEntry } from '../mcp/monoes-mcp-entry.mjs';
 import { mcpAddHint, mcpServerEntry } from '../platform-adapters/renderers/mcp.js';
 export { buildMonoesMcpEntry };
+/**
+ * `existing` .mcp.json text with `generated`'s servers merged in, or null when
+ * `existing` is not a JSON object. Only monomind's entries change: servers the
+ * generator emits replace their namesakes (the tokenless monoes entry is how a
+ * leaked token is migrated away), except `monomind`, whose command/args are
+ * refreshed while every other field and env value the user set is kept. Other
+ * servers and top-level keys are untouched.
+ */
+export function mergeMCPJson(existing, generated) {
+    let parsed;
+    try {
+        parsed = JSON.parse(existing);
+    }
+    catch {
+        return null;
+    }
+    if (!parsed || typeof parsed !== 'object' || Array.isArray(parsed))
+        return null;
+    const servers = { ...(parsed.mcpServers ?? {}) };
+    for (const [name, entry] of Object.entries(JSON.parse(generated).mcpServers)) {
+        const current = servers[name] ?? {};
+        servers[name] =
+            name === 'monomind'
+                ? { ...current, ...entry, env: { ...entry.env, ...current.env } }
+                : entry;
+    }
+    return `${JSON.stringify({ ...parsed, mcpServers: servers }, null, 2)}\n`;
+}
 /**
  * Generate MCP configuration
  */

package/dist/src/init/mcp-generator.js.map

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package/dist/src/init/runtime-config-merge.d.ts

@@ -0,0 +1,21 @@
+/**
+ * Merges for the two `.monomind/` files users are told to edit —
+ * `config.yaml` and `.gitignore` — so `init --force` refreshes monomind's
+ * defaults without discarding what the user added.
+ */
+/**
+ * Adds every key present in `generated` but absent from `existing`, under the
+ * same parent, and changes nothing else: user keys, values, comments and order
+ * are kept. A default whose parent the user turned into a scalar is skipped.
+ */
+export declare function mergeYamlDefaults(existing: string, generated: string): string;
+/**
+ * Places `template` inside `# monomind:start gitignore` / `# monomind:end
+ * gitignore` markers and keeps every other line. An existing block is
+ * replaced in place. A file written before the markers existed has the
+ * template's own lines removed (they now live in the block) and the block put
+ * first, so user lines such as `!orgs/<org>.json` keep coming after the `*`
+ * they re-include from — gitignore order matters.
+ */
+export declare function mergeGitignoreBlock(existing: string, template: string): string;
+//# sourceMappingURL=runtime-config-merge.d.ts.map

package/dist/src/init/runtime-config-merge.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/init/runtime-config-merge.js

@@ -0,0 +1,88 @@
+/**
+ * Merges for the two `.monomind/` files users are told to edit —
+ * `config.yaml` and `.gitignore` — so `init --force` refreshes monomind's
+ * defaults without discarding what the user added.
+ */
+const KEY_LINE = /^( *)([^\s#:-][^:#]*?):(?:\s(.*))?$/;
+/** Every `key:` line with its dotted path. Only the plain nested-map shape
+ *  config.yaml uses is understood; anything else is carried as text. */
+function keyLines(lines) {
+    const out = [];
+    const stack = [];
+    lines.forEach((line, index) => {
+        const match = KEY_LINE.exec(line);
+        if (!match)
+            return;
+        const indent = match[1].length;
+        while (stack.length && stack[stack.length - 1].indent >= indent)
+            stack.pop();
+        stack.push({ indent, key: match[2].trim() });
+        const value = (match[3] ?? '').trim();
+        out.push({
+            index,
+            indent,
+            path: stack.map((s) => s.key).join('.'),
+            isMap: value === '' || value.startsWith('#'),
+        });
+    });
+    return out;
+}
+/** Index of the last line belonging to the key at `keys[at]` (its subtree). */
+function subtreeEnd(lines, keys, at) {
+    const next = keys.slice(at + 1).find((k) => k.indent <= keys[at].indent);
+    let end = (next ? next.index : lines.length) - 1;
+    while (end > keys[at].index && lines[end].trim() === '')
+        end--;
+    return end;
+}
+/**
+ * Adds every key present in `generated` but absent from `existing`, under the
+ * same parent, and changes nothing else: user keys, values, comments and order
+ * are kept. A default whose parent the user turned into a scalar is skipped.
+ */
+export function mergeYamlDefaults(existing, generated) {
+    const genLines = generated.split('\n');
+    const genKeys = keyLines(genLines);
+    const lines = existing.replace(/\n+$/, '').split('\n');
+    for (let g = 0; g < genKeys.length; g++) {
+        const keys = keyLines(lines);
+        const byPath = new Map(keys.map((k, i) => [k.path, i]));
+        if (byPath.has(genKeys[g].path))
+            continue;
+        const parentPath = genKeys[g].path.split('.').slice(0, -1).join('.');
+        const parentAt = parentPath ? byPath.get(parentPath) : undefined;
+        if (parentPath && (parentAt === undefined || !keys[parentAt].isMap))
+            continue;
+        const block = genLines.slice(genKeys[g].index, subtreeEnd(genLines, genKeys, g) + 1);
+        const insertAt = parentAt === undefined ? lines.length : subtreeEnd(lines, keys, parentAt) + 1;
+        lines.splice(insertAt, 0, ...(parentAt === undefined ? ['', ...block] : block));
+        // Skip the descendants just inserted along with their parent.
+        const end = subtreeEnd(genLines, genKeys, g);
+        while (g + 1 < genKeys.length && genKeys[g + 1].index <= end)
+            g++;
+    }
+    return `${lines.join('\n')}\n`;
+}
+const GITIGNORE_BLOCK = /^# monomind:start gitignore\r?\n[\s\S]*?^# monomind:end gitignore(?:\r?\n|$)/m;
+/**
+ * Places `template` inside `# monomind:start gitignore` / `# monomind:end
+ * gitignore` markers and keeps every other line. An existing block is
+ * replaced in place. A file written before the markers existed has the
+ * template's own lines removed (they now live in the block) and the block put
+ * first, so user lines such as `!orgs/<org>.json` keep coming after the `*`
+ * they re-include from — gitignore order matters.
+ */
+export function mergeGitignoreBlock(existing, template) {
+    const block = `# monomind:start gitignore\n${template.trimEnd()}\n# monomind:end gitignore\n`;
+    if (GITIGNORE_BLOCK.test(existing))
+        return existing.replace(GITIGNORE_BLOCK, () => block);
+    const own = new Set(template.split('\n').filter((line) => line.trim() !== ''));
+    const rest = existing
+        .split('\n')
+        .filter((line) => !own.has(line))
+        .join('\n')
+        .replace(/^\s+/, '')
+        .trimEnd();
+    return rest ? `${block}\n${rest}\n` : block;
+}
+//# sourceMappingURL=runtime-config-merge.js.map

package/dist/src/init/runtime-config-merge.js.map

@@ -0,0 +1 @@
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package/dist/src/init/settings-generator.js

@@ -310,7 +310,7 @@ function generateHooksConfig(config, monograph = true) {
                         type: 'command',
                         command: hookHandlerCmd('route'),
                         // Covers the route hook's own exit deadline with the longest Jev
-                        // window (MONOMIND_JEV_HOOK_TIMEOUT_MS max 10 s + 1.5 s).
+                        // window (MONOMIND_JEV_HOOK_TIMEOUT_MS, capped at 3 s, + 1.5 s).
                         timeout: 12,
                     },
                     {

package/dist/src/init/settings-generator.js.map

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package/dist/src/init/shared-instructions-generator.d.ts

@@ -34,5 +34,7 @@ export interface MemorySeed {
     namespace: string;
 }
 export declare function generateMemorySeeds(profile: ProjectProfile): MemorySeed[];
-export declare function writeSharedInstructions(cwd: string, force: boolean, result: InitResult): void;
+/** Writes .agents/shared_instructions.md and returns the memory seeds for the
+ *  project it described (none when the file was left alone). */
+export declare function writeSharedInstructions(cwd: string, force: boolean, result: InitResult): MemorySeed[];
 //# sourceMappingURL=shared-instructions-generator.d.ts.map

package/dist/src/init/shared-instructions-generator.d.ts.map

@@ -1 +1 @@
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