@monoes/monomindcli 2.11.12 → 2.13.0

package/dist/src/memory/memory-bridge.d.ts

@@ -12,18 +12,99 @@
 export declare function safeParseEmbedding(raw: string | null | undefined): number[] | null;
 export declare const BRIDGE_EMBEDDING_MODEL = "Alibaba-NLP/gte-modernbert-base";
 export declare const BRIDGE_EMBEDDING_DIMS = 768;
+export interface ProjectRootResolution {
+    root: string;
+    /** Why `root` was chosen — for disclosure (doctor, debug logs), not
+     *  behavior. `explicit-anchor`: MONOMIND_PROJECT_ROOT set and valid.
+     *  `git`: a `.git` ancestor (any depth) was adopted. `monomind-at-start`:
+     *  the starting directory itself carries `.monomind` (the user is
+     *  standing in their own project — always trusted). `monomind-with-marker`:
+     *  an ancestor's `.monomind` was corroborated by an independent project
+     *  marker. `start-fallback`: nothing adoptable was found; `root` is
+     *  `start`. */
+    reason: 'explicit-anchor' | 'git' | 'monomind-at-start' | 'monomind-with-marker' | 'start-fallback';
+    /** Set only on `start-fallback`: the first bare `.monomind` ancestor that
+     *  was found but NOT adopted (no independent marker alongside it), so a
+     *  caller can tell a genuinely ambiguous user why their brain stayed put
+     *  instead of silently picking a directory that merely looked plausible. */
+    ignoredBareMonomind?: string;
+    /** Set whenever MONOMIND_PROJECT_ROOT was present in the environment but
+     *  failed validation — regardless of what `reason`/`root` ended up being,
+     *  so a typo'd anchor is never silently dropped just because the ordinary
+     *  walk happened to land somewhere reasonable anyway (o-16 revision 1). */
+    invalidAnchor?: {
+        value: string;
+        problem: string;
+    };
+}
+/** The full resolution — root, reason and (when the walk found nothing
+ *  adoptable) which bare `.monomind` ancestor it ignored. `doctor` uses this
+ *  to disclose which directory a user's brain is keyed to and why, instead
+ *  of a plausible-but-silent path (o-16). See `getProjectRoot` for the
+ *  string-only form the other ~28 call sites use. */
+export declare function getProjectRootResolution(from?: string): ProjectRootResolution;
 /** The directory that identifies "this project" for every Second Brain store.
  *
  * Deliberately NOT the raw cwd: keying on cwd forked the brain per directory —
  * `doc ingest ./docs` from a package subdir wrote to a different store, and a
  * different metadata file, than the identical command at the repo root, and
  * neither could see the other. We walk up to the nearest ancestor carrying a
- * `.monomind` or `.git` marker, so every directory inside one project resolves
- * to one brain. Nested projects still win (the walk stops at the FIRST marker),
- * which keeps worktrees and vendored sub-repos independent.
+ * `.git` marker (any depth), or a `.monomind` marker corroborated by an
+ * independent project marker, so every directory inside one project resolves
+ * to one brain. Nested projects still win (the walk stops at the FIRST
+ * eligible marker), which keeps worktrees and vendored sub-repos independent.
+ *
+ * o-16: a BARE `.monomind` ancestor (no `.git`, no manifest) is NOT adopted.
+ * `.monomind` is created by monomind itself as a side effect of running
+ * anywhere — it is not independent evidence of a project, and a wrong
+ * resolution creates the very marker that would capture every future
+ * descendant if it were trusted alone. See `walkToProjectRoot`'s comment for
+ * the measured incident this fixes. The starting directory's OWN `.monomind`
+ * is still trusted unconditionally — that is the user pointing at their own
+ * project — and `.git` at any depth is untouched, so CI/devcontainer repos
+ * and subdirectory unification behave exactly as before.
  *
  * The walk never crosses the home directory: a dotfiles repo at `~` would
  * otherwise swallow every loose project underneath it into one shared brain.
+ * `MONOMIND_PROJECT_ROOT`, if set AND VALID (absolute, exists, is a
+ * directory, is not itself the filesystem root — see `validateAnchor`), is
+ * an explicit anchor that skips the walk entirely — the escape hatch for
+ * the genuinely ambiguous case (design decision 4 / AC-3c: a real, non-git
+ * project whose root has a bare `.monomind` and no manifest has no other
+ * way to be found from a subdirectory). An invalid anchor falls through to
+ * the walk rather than being adopted OR silently dropped — see
+ * `ProjectRootResolution.invalidAnchor`.
+ *
+ * This is `MONOMIND_PROJECT_ROOT`'s SECOND consumer in this codebase —
+ * `mcp-tools/guidance-tools.ts:findProjectRoot()` already reads the same
+ * env var, for a DIFFERENT marker (`.claude`, not `.monomind`/`.git`), with
+ * a stricter rule: `if (envRoot && existsSync(join(envRoot, '.claude')))`,
+ * i.e. it only honors the anchor when `.claude` exists there, silently
+ * falling through to its own walk otherwise. After this revision the two
+ * converge on ANCHOR HANDLING for the cases that matter most — a typo'd or
+ * missing path is rejected by both (this one via `validateAnchor`,
+ * guidance-tools' because `.claude` is absent) — but "converge" describes
+ * only whether each accepts or rejects the anchor, not the final resolved
+ * root: a rejected anchor falls through to each resolver's OWN walk
+ * (`walkToProjectRoot` here; guidance-tools' own Strategy 1/2/3 chain
+ * there), which can still land on different directories for the same
+ * unanchored cwd. Two residual disagreements remain, both legitimate rather
+ * than oversights:
+ * 1. An anchor that exists and is a real directory but has no `.claude` in
+ *    it: this function honors it (memory has no reason to require a
+ *    `.claude` folder — a project's knowledge store isn't gated on whether
+ *    an agent config lives there), guidance-tools does not (`.claude` is
+ *    the one thing it's searching FOR, so its absence is a real signal, not
+ *    noise, for that consumer specifically).
+ * 2. A RELATIVE anchor: `validateAnchor` rejects it outright (an anchor
+ *    that silently depends on cwd defeats the point of an anchor).
+ *    guidance-tools has no absolute-path check, so `existsSync(join(envRoot,
+ *    '.claude'))` would resolve a relative `envRoot` against cwd and could
+ *    accept it — narrower in practice (needs a `.claude` at that resolved
+ *    location too) but a real gap in the two resolvers' shared assumptions.
+ * Reconciling the two resolvers' semantics into one shared rule is a
+ * separate, larger question (tracked as o-32), not something this fix
+ * should decide as a side effect.
  *
  * For anyone who already ran from the project root — the normal case — the
  * resolved path is identical to before, so their store does not move.

package/dist/src/memory/memory-bridge.d.ts.map

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package/dist/src/memory/memory-bridge.js

@@ -81,25 +81,137 @@ function capResultContent(content) {
 // '/x/foo/bar' would both flatten to 'x-foo-bar'). A short readable prefix is
 // kept purely so the directory name is browsable; only the hash guarantees
 // uniqueness.
+// o-16: `.git` and `.monomind` are NOT equivalent evidence of a project.
+// `.git` is created by the user, deliberately (`git init`/clone) — "this
+// directory is a repository". `.monomind` is created by monomind ITSELF, as
+// a side effect of running anywhere — "monomind once ran here", and nothing
+// more. Treating a bare `.monomind` ancestor as adoptable is a feedback
+// loop: a wrong resolution creates the very marker that captures every
+// future descendant. Measured against the actual incident:
+// `/home/monoes/mdev-tmp/.monomind` and `/home/monoes/.monomind` both exist,
+// neither has a `.git` or manifest, and neither is a project — both are
+// monomind's own state directories. `INDEPENDENT_PROJECT_MARKERS` (other
+// than `.git`, handled unconditionally) is what makes a `.monomind`
+// ancestor's claim independently checkable.
+const INDEPENDENT_PROJECT_MARKERS = ['package.json', 'pyproject.toml', 'go.mod', 'Cargo.toml'];
+function markerExists(p) {
+    try {
+        return fs.existsSync(p);
+    }
+    catch (e) {
+        logBridgeError('walkToProjectRoot', e); /* unreadable dir — treat as absent, keep walking */
+        return false;
+    }
+}
+/** o-16 revision 1 (reviewer MAJOR 1, measured not argued): the anchor used
+ *  to be trusted unconditionally. Two proven harms: (a) a non-existent path
+ *  (a typo) was adopted as-is, and `projectDataDir()` hashed it into a
+ *  fresh, empty store directory — the exact split-store failure this item
+ *  exists to eliminate, reintroduced by the escape hatch meant to fix it.
+ *  (b) `MONOMIND_PROJECT_ROOT=/` disabled `getDbPath`'s MCP path-traversal
+ *  guard entirely: the guard is `path.relative(getProjectRoot(), resolved)`
+ *  not starting with `..`, and `path.relative('/', anything)` never does.
+ *  `existsSync` + `isDirectory` alone catch (a) but NOT (b) — `/` exists and
+ *  is a directory — so the filesystem-root check below is what closes (b)
+ *  specifically; it is not redundant with the others. An invalid anchor is
+ *  never silently accepted OR silently dropped: the caller falls through to
+ *  the ordinary walk, and the fact that an anchor was set and rejected is
+ *  preserved on the result (`invalidAnchor`) so `doctor` can say exactly
+ *  what happened instead of the user just seeing an unexplained directory. */
+function validateAnchor(raw) {
+    if (!path.isAbsolute(raw))
+        return { ok: false, problem: 'not an absolute path' };
+    const lexical = path.resolve(raw);
+    // o-16 revision 2 (reviewer MAJOR): resolve symlinks BEFORE validating,
+    // and return the REAL path, not the lexical one. Without this, a symlink
+    // whose real target is '/' (e.g. MONOMIND_PROJECT_ROOT=<tmp>/link-to-root)
+    // passes every check below on its lexical form — dirname(lexical) !==
+    // lexical, since the link itself sits inside a normal directory — while
+    // getDbPath's traversal guard (memory-bridge.ts's realOrResolved(), i.e.
+    // fs.realpathSync) resolves the SAME anchor to '/' downstream. Two
+    // notions of "the root" in one module: the store gets hashed from the
+    // lexical path this function returned, the guard's boundary is computed
+    // from the real one, and path.relative('/', anything) never starts with
+    // '..' — the exact guard-disabling hole this function exists to close,
+    // reopened one indirection away. Validating and returning the SAME (real)
+    // path is what makes validation and consumption agree, for any
+    // symlinked anchor, not just a literal '/'.
+    let real;
+    try {
+        real = fs.realpathSync(lexical);
+    }
+    catch {
+        return { ok: false, problem: 'does not exist' };
+    }
+    let stat;
+    try {
+        stat = fs.statSync(real);
+    }
+    catch {
+        return { ok: false, problem: 'does not exist' };
+    }
+    if (!stat.isDirectory())
+        return { ok: false, problem: 'is not a directory' };
+    if (path.dirname(real) === real) {
+        return {
+            ok: false,
+            problem: 'is the filesystem root, which would disable the MCP path-traversal guard',
+        };
+    }
+    return { ok: true, resolved: real };
+}
 function walkToProjectRoot(start) {
+    // Explicit escape hatch: honored ahead of any walk, but only once valid —
+    // see validateAnchor's comment for why unconditional trust was wrong.
+    const anchorRaw = process.env.MONOMIND_PROJECT_ROOT;
+    let invalidAnchor;
+    if (anchorRaw) {
+        const check = validateAnchor(anchorRaw);
+        if (check.ok)
+            return { root: check.resolved, reason: 'explicit-anchor' };
+        invalidAnchor = { value: anchorRaw, problem: check.problem };
+        logBridgeError('walkToProjectRoot', new Error(`MONOMIND_PROJECT_ROOT ignored: "${anchorRaw}" ${check.problem} — falling back to the walk`));
+    }
+    // Retained from before o-16: protects the dotfiles-repo-at-$HOME case (a
+    // `.git` at $HOME must not swallow every loose project underneath it).
+    // Insufficient ALONE against the reported incident — that marker sat
+    // *inside* $HOME, so the walk reached it long before ever reaching home —
+    // which is why it is additive to, not a replacement for, the rule below.
     const home = path.resolve(os.homedir());
     let dir = start;
+    let ignoredBareMonomind;
+    let atStart = true;
     for (;;) {
         if (dir === home)
             break;
-        try {
-            if (fs.existsSync(path.join(dir, '.monomind')) || fs.existsSync(path.join(dir, '.git')))
-                return dir;
-        }
-        catch (e) {
-            logBridgeError('walkToProjectRoot', e); /* unreadable dir — keep walking */
+        if (markerExists(path.join(dir, '.git')))
+            return { root: dir, reason: 'git', invalidAnchor };
+        if (markerExists(path.join(dir, '.monomind'))) {
+            if (atStart)
+                return { root: dir, reason: 'monomind-at-start', invalidAnchor };
+            const corroborated = INDEPENDENT_PROJECT_MARKERS.some((m) => markerExists(path.join(dir, m)));
+            if (corroborated)
+                return { root: dir, reason: 'monomind-with-marker', invalidAnchor };
+            // The nearest marker found doesn't qualify — stop HERE. Continuing
+            // past it to adopt some more distant, unrelated ancestor's `.git`
+            // would break "nested projects keep their own brain" in a new way:
+            // a vendored sub-repo with only a bare `.monomind` would get silently
+            // merged into whatever repo happens to sit further up, which the
+            // original nearest-marker-wins design specifically existed to
+            // prevent. Not adopting is the fallback; walking past is not.
+            ignoredBareMonomind = dir;
+            break;
         }
+        atStart = false;
         const parent = path.dirname(dir);
         if (parent === dir)
             break;
         dir = parent;
     }
-    return start;
+    if (ignoredBareMonomind !== undefined) {
+        logBridgeError('walkToProjectRoot', new Error(`bare .monomind ancestor ignored at ${ignoredBareMonomind} (no independent project marker) — using ${start}`));
+    }
+    return { root: start, reason: 'start-fallback', ignoredBareMonomind, invalidAnchor };
 }
 // getBackend() resolves the store path on every store/search, so a bulk ingest
 // would otherwise repeat the stat walk thousands of times. A project does not
@@ -107,18 +219,88 @@ function walkToProjectRoot(start) {
 // chdir still re-resolves.
 let _rootCacheKey;
 let _rootCacheVal;
+/** The full resolution — root, reason and (when the walk found nothing
+ *  adoptable) which bare `.monomind` ancestor it ignored. `doctor` uses this
+ *  to disclose which directory a user's brain is keyed to and why, instead
+ *  of a plausible-but-silent path (o-16). See `getProjectRoot` for the
+ *  string-only form the other ~28 call sites use. */
+export function getProjectRootResolution(from = process.env.MONOMIND_CWD || process.cwd()) {
+    const start = path.resolve(from);
+    // Cache key must cover everything walkToProjectRoot's result depends on,
+    // not just `start` — MONOMIND_PROJECT_ROOT short-circuits the walk (o-16),
+    // so a cache keyed on `start` alone would replay a stale pre-anchor (or
+    // stale different-anchor) result for the same cwd once the env var changes
+    // mid-process, silently defeating the escape hatch it's supposed to be.
+    const cacheKey = `${start}\n${process.env.MONOMIND_PROJECT_ROOT ?? ''}`;
+    if (cacheKey === _rootCacheKey && _rootCacheVal !== undefined)
+        return _rootCacheVal;
+    const resolved = walkToProjectRoot(start);
+    _rootCacheKey = cacheKey;
+    _rootCacheVal = resolved;
+    return resolved;
+}
 /** The directory that identifies "this project" for every Second Brain store.
  *
  * Deliberately NOT the raw cwd: keying on cwd forked the brain per directory —
  * `doc ingest ./docs` from a package subdir wrote to a different store, and a
  * different metadata file, than the identical command at the repo root, and
  * neither could see the other. We walk up to the nearest ancestor carrying a
- * `.monomind` or `.git` marker, so every directory inside one project resolves
- * to one brain. Nested projects still win (the walk stops at the FIRST marker),
- * which keeps worktrees and vendored sub-repos independent.
+ * `.git` marker (any depth), or a `.monomind` marker corroborated by an
+ * independent project marker, so every directory inside one project resolves
+ * to one brain. Nested projects still win (the walk stops at the FIRST
+ * eligible marker), which keeps worktrees and vendored sub-repos independent.
+ *
+ * o-16: a BARE `.monomind` ancestor (no `.git`, no manifest) is NOT adopted.
+ * `.monomind` is created by monomind itself as a side effect of running
+ * anywhere — it is not independent evidence of a project, and a wrong
+ * resolution creates the very marker that would capture every future
+ * descendant if it were trusted alone. See `walkToProjectRoot`'s comment for
+ * the measured incident this fixes. The starting directory's OWN `.monomind`
+ * is still trusted unconditionally — that is the user pointing at their own
+ * project — and `.git` at any depth is untouched, so CI/devcontainer repos
+ * and subdirectory unification behave exactly as before.
  *
  * The walk never crosses the home directory: a dotfiles repo at `~` would
  * otherwise swallow every loose project underneath it into one shared brain.
+ * `MONOMIND_PROJECT_ROOT`, if set AND VALID (absolute, exists, is a
+ * directory, is not itself the filesystem root — see `validateAnchor`), is
+ * an explicit anchor that skips the walk entirely — the escape hatch for
+ * the genuinely ambiguous case (design decision 4 / AC-3c: a real, non-git
+ * project whose root has a bare `.monomind` and no manifest has no other
+ * way to be found from a subdirectory). An invalid anchor falls through to
+ * the walk rather than being adopted OR silently dropped — see
+ * `ProjectRootResolution.invalidAnchor`.
+ *
+ * This is `MONOMIND_PROJECT_ROOT`'s SECOND consumer in this codebase —
+ * `mcp-tools/guidance-tools.ts:findProjectRoot()` already reads the same
+ * env var, for a DIFFERENT marker (`.claude`, not `.monomind`/`.git`), with
+ * a stricter rule: `if (envRoot && existsSync(join(envRoot, '.claude')))`,
+ * i.e. it only honors the anchor when `.claude` exists there, silently
+ * falling through to its own walk otherwise. After this revision the two
+ * converge on ANCHOR HANDLING for the cases that matter most — a typo'd or
+ * missing path is rejected by both (this one via `validateAnchor`,
+ * guidance-tools' because `.claude` is absent) — but "converge" describes
+ * only whether each accepts or rejects the anchor, not the final resolved
+ * root: a rejected anchor falls through to each resolver's OWN walk
+ * (`walkToProjectRoot` here; guidance-tools' own Strategy 1/2/3 chain
+ * there), which can still land on different directories for the same
+ * unanchored cwd. Two residual disagreements remain, both legitimate rather
+ * than oversights:
+ * 1. An anchor that exists and is a real directory but has no `.claude` in
+ *    it: this function honors it (memory has no reason to require a
+ *    `.claude` folder — a project's knowledge store isn't gated on whether
+ *    an agent config lives there), guidance-tools does not (`.claude` is
+ *    the one thing it's searching FOR, so its absence is a real signal, not
+ *    noise, for that consumer specifically).
+ * 2. A RELATIVE anchor: `validateAnchor` rejects it outright (an anchor
+ *    that silently depends on cwd defeats the point of an anchor).
+ *    guidance-tools has no absolute-path check, so `existsSync(join(envRoot,
+ *    '.claude'))` would resolve a relative `envRoot` against cwd and could
+ *    accept it — narrower in practice (needs a `.claude` at that resolved
+ *    location too) but a real gap in the two resolvers' shared assumptions.
+ * Reconciling the two resolvers' semantics into one shared rule is a
+ * separate, larger question (tracked as o-32), not something this fix
+ * should decide as a side effect.
  *
  * For anyone who already ran from the project root — the normal case — the
  * resolved path is identical to before, so their store does not move.
@@ -130,13 +312,7 @@ let _rootCacheVal;
  * node builtins only (see the static import in document-pipeline.ts).
  */
 export function getProjectRoot(from = process.env.MONOMIND_CWD || process.cwd()) {
-    const start = path.resolve(from);
-    if (start === _rootCacheKey && _rootCacheVal !== undefined)
-        return _rootCacheVal;
-    const resolved = walkToProjectRoot(start);
-    _rootCacheKey = start;
-    _rootCacheVal = resolved;
-    return resolved;
+    return getProjectRootResolution(from).root;
 }
 function projectDataDir() {
     const resolved = path.resolve(getProjectRoot());
@@ -180,6 +356,28 @@ function getDbPath(customPath) {
     const resolved = realOrResolved(path.resolve(customPath));
     // Guard against path traversal from MCP inputs: only allow paths inside the
     // project, the per-project home data dir, or the global brain.
+    //
+    // STATED LIMIT (o-16 revision 2, corrected in revision 3 — verifier found
+    // the first version of this comment named the wrong path): `validateAnchor`
+    // resolves a `MONOMIND_PROJECT_ROOT` anchor to its REAL path ONCE via
+    // `fs.realpathSync`, and caches THAT REAL PATH STRING in `_rootCacheVal`
+    // (see above) — `getProjectRoot()` returns this cached real-path string on
+    // every subsequent call in this process; it does not re-read the anchor
+    // or re-run `validateAnchor`. So swapping the filesystem entry AT THE
+    // ANCHOR PATH after validation does nothing — the anchor itself is never
+    // consulted again. The actual gap is one level further in: the line below
+    // calls `realOrResolved()` (a fresh `fs.realpathSync`) on that cached
+    // REAL-PATH STRING every time `getDbPath` runs. If the filesystem entry
+    // AT THAT RESOLVED TARGET (not the anchor) is swapped for a symlink to
+    // `/` after validation but before a later call here, this re-resolves to
+    // the new real target live, and the guard is bypassed for that call — a
+    // TOCTOU gap between a one-time resolution and a re-resolved-every-call
+    // consumption of the same path string. NOT defended against: closing it
+    // properly means validating and consuming a single resolved handle rather
+    // than a path string, which is a real design change and out of scope for
+    // this fix. Accepted because it needs filesystem write access at the
+    // resolved target's path, timed against a live process — an attacker
+    // with that capability already has easier routes than this guard.
     const relCwd = path.relative(realOrResolved(getProjectRoot()), resolved);
     const relHome = path.relative(realOrResolved(projectDataDir()), resolved);
     const relGlobal = path.relative(realOrResolved(getGlobalBrainDir()), resolved);