@monoes/monomindcli 1.15.3 → 1.15.5

package/dist/src/mcp-tools/coherence/quantum-topology.js

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+/**
+ * Quantum Topology Tool - pr_quantum_topology
+ *
+ * Computes quantum topology features including Betti numbers and persistence diagrams.
+ * Analyzes topological features of point clouds and simplicial complexes.
+ *
+ * Uses QuantumEngine from prime-radiant-advanced-wasm
+ */
+import { TopologyInputSchema, successResult, errorResult, } from './types.js';
+// Default logger
+const defaultLogger = {
+    debug: (msg, meta) => console.debug(`[pr_quantum_topology] ${msg}`, meta),
+    info: (msg, meta) => console.info(`[pr_quantum_topology] ${msg}`, meta),
+    warn: (msg, meta) => console.warn(`[pr_quantum_topology] ${msg}`, meta),
+    error: (msg, meta) => console.error(`[pr_quantum_topology] ${msg}`, meta),
+};
+// ============================================================================
+// Topology Helper Functions
+// ============================================================================
+/**
+ * Compute Euclidean distance between two points
+ */
+function euclideanDistance(a, b) {
+    let sum = 0;
+    for (let i = 0; i < a.length; i++) {
+        const diff = a[i] - b[i];
+        sum += diff * diff;
+    }
+    return Math.sqrt(sum);
+}
+/**
+ * Build distance matrix from vertices
+ */
+function buildDistanceMatrix(vertices) {
+    const n = vertices.length;
+    const matrix = [];
+    for (let i = 0; i < n; i++) {
+        matrix[i] = [];
+        for (let j = 0; j < n; j++) {
+            matrix[i][j] = euclideanDistance(vertices[i], vertices[j]);
+        }
+    }
+    return matrix;
+}
+/**
+ * Build Vietoris-Rips complex at given epsilon
+ * Returns list of simplices (vertex index arrays)
+ */
+function buildRipsComplex(distanceMatrix, epsilon, maxDimension) {
+    const n = distanceMatrix.length;
+    const simplices = [];
+    // Add 0-simplices (vertices)
+    for (let i = 0; i < n; i++) {
+        simplices.push([i]);
+    }
+    if (maxDimension < 1)
+        return simplices;
+    // Add 1-simplices (edges)
+    const edges = [];
+    for (let i = 0; i < n; i++) {
+        for (let j = i + 1; j < n; j++) {
+            if (distanceMatrix[i][j] <= epsilon) {
+                edges.push([i, j]);
+                simplices.push([i, j]);
+            }
+        }
+    }
+    if (maxDimension < 2)
+        return simplices;
+    // Add 2-simplices (triangles)
+    // A triangle exists if all three edges exist
+    const edgeSet = new Set(edges.map(e => `${e[0]}-${e[1]}`));
+    for (let i = 0; i < n; i++) {
+        for (let j = i + 1; j < n; j++) {
+            if (!edgeSet.has(`${i}-${j}`))
+                continue;
+            for (let k = j + 1; k < n; k++) {
+                if (edgeSet.has(`${i}-${k}`) && edgeSet.has(`${j}-${k}`)) {
+                    simplices.push([i, j, k]);
+                }
+            }
+        }
+    }
+    if (maxDimension < 3)
+        return simplices;
+    // Add 3-simplices (tetrahedra)
+    // Simplified: only add if all faces exist
+    const triangleSet = new Set(simplices
+        .filter(s => s.length === 3)
+        .map(t => `${t[0]}-${t[1]}-${t[2]}`));
+    for (let i = 0; i < n; i++) {
+        for (let j = i + 1; j < n; j++) {
+            for (let k = j + 1; k < n; k++) {
+                for (let l = k + 1; l < n; l++) {
+                    // Check all 4 triangular faces exist
+                    const faces = [
+                        `${i}-${j}-${k}`,
+                        `${i}-${j}-${l}`,
+                        `${i}-${k}-${l}`,
+                        `${j}-${k}-${l}`,
+                    ];
+                    if (faces.every(f => triangleSet.has(f))) {
+                        simplices.push([i, j, k, l]);
+                    }
+                }
+            }
+        }
+    }
+    return simplices;
+}
+/**
+ * Compute Betti numbers from simplicial complex
+ * Uses simplified computation based on simplex counts
+ *
+ * Betti numbers:
+ * - b0: Number of connected components
+ * - b1: Number of loops/cycles
+ * - b2: Number of voids/cavities
+ */
+function computeBettiNumbers(vertices, simplices, maxDimension) {
+    const n = vertices.length;
+    const bettiNumbers = [];
+    // Count simplices by dimension
+    const simplexCounts = new Array(maxDimension + 1).fill(0);
+    for (const simplex of simplices) {
+        const dim = simplex.length - 1;
+        if (dim <= maxDimension) {
+            simplexCounts[dim]++;
+        }
+    }
+    // b0: Connected components (using union-find approximation)
+    const parent = new Array(n).fill(-1);
+    function find(x) {
+        if (parent[x] < 0)
+            return x;
+        parent[x] = find(parent[x]);
+        return parent[x];
+    }
+    function union(x, y) {
+        const px = find(x);
+        const py = find(y);
+        if (px !== py) {
+            parent[px] = py;
+        }
+    }
+    // Connect vertices in edges
+    for (const simplex of simplices) {
+        if (simplex.length === 2) {
+            union(simplex[0], simplex[1]);
+        }
+    }
+    // Count components
+    let b0 = 0;
+    for (let i = 0; i < n; i++) {
+        if (parent[i] < 0)
+            b0++;
+    }
+    bettiNumbers.push(b0);
+    // b1: Approximate using Euler characteristic relationship
+    // For connected graphs: b1 = edges - vertices + components
+    if (maxDimension >= 1) {
+        const edges = simplexCounts[1] || 0;
+        const b1 = Math.max(0, edges - n + b0);
+        bettiNumbers.push(b1);
+    }
+    // b2: Approximate from triangle/tetrahedron relationship
+    if (maxDimension >= 2) {
+        const triangles = simplexCounts[2] || 0;
+        const tetrahedra = simplexCounts[3] || 0;
+        // Simplified: b2 related to enclosed voids
+        const b2 = Math.max(0, tetrahedra > 0 ? 1 : 0);
+        bettiNumbers.push(b2);
+    }
+    return bettiNumbers;
+}
+/**
+ * Compute persistence diagram using filtration
+ * Tracks birth and death of topological features
+ */
+function computePersistenceDiagram(distanceMatrix, maxDimension) {
+    const diagram = [];
+    // Get all unique distances (filtration values)
+    const distances = [];
+    const n = distanceMatrix.length;
+    for (let i = 0; i < n; i++) {
+        for (let j = i + 1; j < n; j++) {
+            distances.push(distanceMatrix[i][j]);
+        }
+    }
+    distances.sort((a, b) => a - b);
+    const uniqueDistances = [...new Set(distances)];
+    // Sample filtration values
+    const sampleCount = Math.min(10, uniqueDistances.length);
+    const sampleIndices = [];
+    for (let i = 0; i < sampleCount; i++) {
+        sampleIndices.push(Math.floor(i * uniqueDistances.length / sampleCount));
+    }
+    const filtrationValues = sampleIndices.map(i => uniqueDistances[i]);
+    if (filtrationValues.length === 0)
+        return diagram;
+    // Track Betti numbers at each filtration value
+    let prevBetti = [];
+    for (let f = 0; f < filtrationValues.length; f++) {
+        const epsilon = filtrationValues[f];
+        const simplices = buildRipsComplex(distanceMatrix, epsilon, maxDimension);
+        const currentBetti = computeBettiNumbers(new Array(n).fill([]).map((_, i) => [i]), simplices, maxDimension);
+        if (f > 0) {
+            // Detect births and deaths
+            for (let dim = 0; dim <= maxDimension && dim < currentBetti.length; dim++) {
+                const prevB = prevBetti[dim] || 0;
+                const currB = currentBetti[dim] || 0;
+                // New features born
+                if (currB > prevB) {
+                    for (let i = 0; i < currB - prevB; i++) {
+                        diagram.push({
+                            birth: filtrationValues[f - 1],
+                            death: Infinity, // Will be updated when feature dies
+                            dimension: dim,
+                        });
+                    }
+                }
+                // Features died
+                if (currB < prevB) {
+                    // Find features to kill (those born earliest)
+                    const toKill = prevB - currB;
+                    let killed = 0;
+                    for (let d = diagram.length - 1; d >= 0 && killed < toKill; d--) {
+                        if (diagram[d].dimension === dim && diagram[d].death === Infinity) {
+                            diagram[d].death = epsilon;
+                            killed++;
+                        }
+                    }
+                }
+            }
+        }
+        else {
+            // Initial features (all vertices born at epsilon = 0)
+            for (let dim = 0; dim <= maxDimension && dim < currentBetti.length; dim++) {
+                for (let i = 0; i < currentBetti[dim]; i++) {
+                    diagram.push({
+                        birth: 0,
+                        death: Infinity,
+                        dimension: dim,
+                    });
+                }
+            }
+        }
+        prevBetti = currentBetti;
+    }
+    return diagram;
+}
+/**
+ * Get interpretation of Betti numbers
+ */
+function interpretBettiNumbers(bettiNumbers) {
+    return {
+        b0: `${bettiNumbers[0] || 0} connected component(s)`,
+        b1: `${bettiNumbers[1] || 0} loop(s)/cycle(s)`,
+        b2: `${bettiNumbers[2] || 0} void(s)/cavit${(bettiNumbers[2] || 0) === 1 ? 'y' : 'ies'}`,
+    };
+}
+/**
+ * Handler for pr_quantum_topology tool
+ */
+async function handler(input, context) {
+    const logger = context?.logger ?? defaultLogger;
+    const startTime = performance.now();
+    try {
+        // Validate input
+        const validationResult = TopologyInputSchema.safeParse(input);
+        if (!validationResult.success) {
+            logger.error('Input validation failed', { error: validationResult.error.message });
+            return errorResult(`Invalid input: ${validationResult.error.message}`);
+        }
+        const { complex } = validationResult.data;
+        const { vertices, maxDimension } = complex;
+        logger.debug('Processing quantum topology', {
+            vertexCount: vertices.length,
+            maxDimension,
+        });
+        if (vertices.length === 0) {
+            return errorResult('No vertices provided');
+        }
+        // Validate vertex dimensions are consistent
+        const firstDim = vertices[0].length;
+        for (let i = 1; i < vertices.length; i++) {
+            if (vertices[i].length !== firstDim) {
+                return errorResult(`Vertex dimension mismatch: vertex ${i} has ${vertices[i].length} dimensions, expected ${firstDim}`);
+            }
+        }
+        let bettiNumbers;
+        let persistenceDiagram;
+        let homologyClasses;
+        // Try to use WASM bridge if available
+        if (context?.bridge?.initialized) {
+            try {
+                logger.debug('Using WASM bridge for topology computation');
+                const result = await context.bridge.computeTopology(complex);
+                bettiNumbers = result.bettiNumbers;
+                persistenceDiagram = result.persistenceDiagram.map(([birth, death], i) => ({
+                    birth,
+                    death,
+                    dimension: Math.min(i % (maxDimension + 1), maxDimension),
+                }));
+                homologyClasses = result.homologyClasses;
+            }
+            catch (wasmError) {
+                logger.warn('WASM bridge failed, falling back to JS implementation', {
+                    error: wasmError instanceof Error ? wasmError.message : String(wasmError),
+                });
+                // Use JavaScript implementation
+                const distanceMatrix = buildDistanceMatrix(vertices);
+                const maxDistance = Math.max(...distanceMatrix.flat().filter(d => d > 0));
+                const simplices = buildRipsComplex(distanceMatrix, maxDistance * 0.5, maxDimension);
+                bettiNumbers = computeBettiNumbers(vertices, simplices, maxDimension);
+                persistenceDiagram = computePersistenceDiagram(distanceMatrix, maxDimension);
+                homologyClasses = bettiNumbers.reduce((a, b) => a + b, 0);
+            }
+        }
+        else {
+            // Pure JavaScript fallback
+            logger.debug('Using JavaScript fallback for topology computation');
+            const distanceMatrix = buildDistanceMatrix(vertices);
+            const maxDistance = Math.max(...distanceMatrix.flat().filter(d => d > 0));
+            const simplices = buildRipsComplex(distanceMatrix, maxDistance * 0.5, maxDimension);
+            bettiNumbers = computeBettiNumbers(vertices, simplices, maxDimension);
+            persistenceDiagram = computePersistenceDiagram(distanceMatrix, maxDimension);
+            homologyClasses = bettiNumbers.reduce((a, b) => a + b, 0);
+        }
+        const output = {
+            bettiNumbers,
+            persistenceDiagram,
+            details: {
+                homologyClasses,
+                interpretation: interpretBettiNumbers(bettiNumbers),
+                vertexCount: vertices.length,
+                maxDimension,
+            },
+        };
+        const duration = performance.now() - startTime;
+        logger.info('Quantum topology completed', {
+            bettiNumbers: bettiNumbers.join(', '),
+            persistencePoints: persistenceDiagram.length,
+            homologyClasses,
+            durationMs: duration.toFixed(2),
+        });
+        return successResult(output);
+    }
+    catch (error) {
+        const duration = performance.now() - startTime;
+        logger.error('Quantum topology failed', {
+            error: error instanceof Error ? error.message : String(error),
+            durationMs: duration.toFixed(2),
+        });
+        return errorResult(error instanceof Error ? error : new Error(String(error)));
+    }
+}
+/**
+ * pr_quantum_topology MCP Tool Definition
+ */
+export const quantumTopologyTool = {
+    name: 'pr_quantum_topology',
+    description: 'Compute quantum topology features including Betti numbers and persistence diagrams. Analyzes topological features of point clouds. Uses QuantumEngine for persistent homology computation.',
+    category: 'topology',
+    version: '0.1.3',
+    tags: ['topology', 'betti-numbers', 'persistence', 'homology', 'ai-interpretability'],
+    cacheable: true,
+    cacheTTL: 120000, // 2 minute cache (expensive computation)
+    inputSchema: {
+        type: 'object',
+        properties: {
+            complex: {
+                type: 'object',
+                properties: {
+                    vertices: {
+                        type: 'array',
+                        items: { type: 'array', items: { type: 'number' } },
+                        description: 'Vertex coordinates (point cloud)',
+                    },
+                    simplices: {
+                        type: 'array',
+                        items: {
+                            type: 'object',
+                            properties: {
+                                vertices: { type: 'array', items: { type: 'number' } },
+                                dimension: { type: 'number' },
+                            },
+                        },
+                        description: 'Explicit simplices (optional, computed from vertices if not provided)',
+                    },
+                    maxDimension: {
+                        type: 'number',
+                        default: 2,
+                        description: 'Maximum homology dimension to compute (0-3)',
+                    },
+                },
+                required: ['vertices'],
+                description: 'Simplicial complex for topological analysis',
+            },
+        },
+        required: ['complex'],
+    },
+    handler,
+};
+export default quantumTopologyTool;
+//# sourceMappingURL=quantum-topology.js.map

package/dist/src/mcp-tools/coherence/quantum-topology.js.map

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package/dist/src/mcp-tools/coherence/spectral-analyze.d.ts

@@ -0,0 +1,15 @@
+/**
+ * Spectral Analysis Tool - pr_spectral_analyze
+ *
+ * Analyzes stability of systems using spectral graph theory.
+ * Computes eigenvalues, spectral gap, and stability metrics.
+ *
+ * Uses SpectralEngine from prime-radiant-advanced-wasm
+ */
+import type { MCPTool } from './types.js';
+/**
+ * pr_spectral_analyze MCP Tool Definition
+ */
+export declare const spectralAnalyzeTool: MCPTool;
+export default spectralAnalyzeTool;
+//# sourceMappingURL=spectral-analyze.d.ts.map

package/dist/src/mcp-tools/coherence/spectral-analyze.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"spectral-analyze.d.ts","sourceRoot":"","sources":["../../../../src/mcp-tools/coherence/spectral-analyze.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EACV,OAAO,EAIR,MAAM,YAAY,CAAC;AAqSpB;;GAEG;AACH,eAAO,MAAM,mBAAmB,EAAE,OA0BjC,CAAC;AAEF,eAAe,mBAAmB,CAAC"}