@monoes/monograph 1.1.0 → 1.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (2488) hide show
  1. package/.monomind/data/ranked-context.json +1 -1
  2. package/.monomind/sessions/session-1777578175215.json +15 -0
  3. package/.monomind/sessions/session-1777823684507.json +15 -0
  4. package/.monomind/sessions/session-1777928944749.json +15 -0
  5. package/.monomind/sessions/session-1778052902210.json +15 -0
  6. package/.monomind/sessions/session-1778056744636.json +15 -0
  7. package/.monomind/sessions/session-1778061077599.json +15 -0
  8. package/.monomind/sessions/session-1778102154764.json +15 -0
  9. package/__tests__/analysis/shape-extractor.test.ts +124 -0
  10. package/__tests__/analysis/surprise-scorer.test.ts +154 -0
  11. package/__tests__/cache/extraction-cache.test.ts +45 -0
  12. package/__tests__/cli/ai-context.test.ts +175 -0
  13. package/__tests__/cli/augment.test.ts +128 -0
  14. package/__tests__/cli/doctor.test.ts +125 -0
  15. package/__tests__/cli/eval-server.test.ts +89 -0
  16. package/__tests__/cli/setup.test.ts +178 -0
  17. package/__tests__/cli/skill-gen.test.ts +280 -0
  18. package/__tests__/fixtures/sample.c +25 -0
  19. package/__tests__/fixtures/sample.cpp +32 -0
  20. package/__tests__/fixtures/sample.dart +34 -0
  21. package/__tests__/fixtures/sample.kt +30 -0
  22. package/__tests__/fixtures/sample.php +30 -0
  23. package/__tests__/fixtures/sample.rb +26 -0
  24. package/__tests__/fixtures/sample.swift +42 -0
  25. package/__tests__/fixtures/sample.vue +40 -0
  26. package/__tests__/groups/group-search.test.ts +221 -0
  27. package/__tests__/groups/group-sync.test.ts +336 -0
  28. package/__tests__/mcp-resources/resources.test.ts +256 -0
  29. package/__tests__/mcp-tools/api-impact.test.ts +188 -0
  30. package/__tests__/mcp-tools/context.test.ts +130 -0
  31. package/__tests__/mcp-tools/cypher.test.ts +254 -0
  32. package/__tests__/mcp-tools/detect-changes.test.ts +111 -0
  33. package/__tests__/mcp-tools/impact.test.ts +133 -0
  34. package/__tests__/mcp-tools/rename.test.ts +117 -0
  35. package/__tests__/mcp-tools/route-map.test.ts +237 -0
  36. package/__tests__/mcp-tools/shape-check.test.ts +202 -0
  37. package/__tests__/mcp-tools/tool-map.test.ts +135 -0
  38. package/__tests__/parsers/c.test.ts +28 -0
  39. package/__tests__/parsers/cpp.test.ts +28 -0
  40. package/__tests__/parsers/csharp.test.ts +62 -0
  41. package/__tests__/parsers/dart.test.ts +28 -0
  42. package/__tests__/parsers/kotlin.test.ts +28 -0
  43. package/__tests__/parsers/php.test.ts +28 -0
  44. package/__tests__/parsers/ruby.test.ts +33 -0
  45. package/__tests__/parsers/swift.test.ts +28 -0
  46. package/__tests__/parsers/vue.test.ts +28 -0
  47. package/__tests__/pipeline/phases/corpus-check.test.ts +26 -0
  48. package/__tests__/pipeline/phases/evidence.test.ts +41 -0
  49. package/__tests__/pipeline/phases/field-access.test.ts +22 -0
  50. package/__tests__/pipeline/phases/leiden.test.ts +72 -0
  51. package/__tests__/pipeline/phases/markdown.test.ts +84 -0
  52. package/__tests__/pipeline/phases/middleware-extractor.test.ts +131 -0
  53. package/__tests__/pipeline/phases/orm.test.ts +379 -0
  54. package/__tests__/pipeline/phases/processes.test.ts +191 -0
  55. package/__tests__/pipeline/phases/routes.test.ts +195 -0
  56. package/__tests__/pipeline/phases/scope-resolution.test.ts +133 -0
  57. package/__tests__/pipeline/phases/tools.test.ts +161 -0
  58. package/__tests__/pipeline/phases/variables.test.ts +30 -0
  59. package/__tests__/pipeline/phases/wildcard-synthesis.test.ts +207 -0
  60. package/__tests__/registry/repo-registry.test.ts +127 -0
  61. package/__tests__/reporting/graph-report.suggest.test.ts +36 -0
  62. package/__tests__/reporting/graph-report.test.ts +165 -0
  63. package/__tests__/search/ast-chunker.test.ts +63 -0
  64. package/__tests__/search/embed-batch-config.test.ts +52 -0
  65. package/__tests__/search/http-embedder.test.ts +78 -0
  66. package/__tests__/search/hybrid-query.test.ts +99 -0
  67. package/__tests__/search/rrf.test.ts +95 -0
  68. package/__tests__/security/safe-fetch.test.ts +41 -0
  69. package/__tests__/security/sensitive-files.test.ts +32 -0
  70. package/__tests__/skills/platform-skills.test.ts +63 -0
  71. package/__tests__/staleness/git-staleness.test.ts +107 -0
  72. package/__tests__/storage/evidence-roundtrip.test.ts +89 -0
  73. package/__tests__/validation/extraction-validator.test.ts +48 -0
  74. package/__tests__/web/analyze-api.test.ts +66 -0
  75. package/__tests__/web/api.test.ts +210 -0
  76. package/__tests__/web/mcp-http.test.ts +67 -0
  77. package/__tests__/web/react-ui.test.ts +43 -0
  78. package/__tests__/wiki/gist-publisher.test.ts +66 -0
  79. package/__tests__/wiki/providers.test.ts +57 -0
  80. package/__tests__/wiki/wiki-generator.test.ts +250 -0
  81. package/dist/src/__tests__/analysis/benchmark.test.d.ts +2 -0
  82. package/dist/src/__tests__/analysis/benchmark.test.d.ts.map +1 -0
  83. package/dist/src/__tests__/analysis/benchmark.test.js +54 -0
  84. package/dist/src/__tests__/analysis/benchmark.test.js.map +1 -0
  85. package/dist/src/__tests__/analysis/cluster-quality.test.d.ts +2 -0
  86. package/dist/src/__tests__/analysis/cluster-quality.test.d.ts.map +1 -0
  87. package/dist/src/__tests__/analysis/cluster-quality.test.js +99 -0
  88. package/dist/src/__tests__/analysis/cluster-quality.test.js.map +1 -0
  89. package/dist/src/__tests__/analysis/corpus-health.test.d.ts +2 -0
  90. package/dist/src/__tests__/analysis/corpus-health.test.d.ts.map +1 -0
  91. package/dist/src/__tests__/analysis/corpus-health.test.js +29 -0
  92. package/dist/src/__tests__/analysis/corpus-health.test.js.map +1 -0
  93. package/dist/src/__tests__/analysis/dependency-health.test.d.ts +2 -0
  94. package/dist/src/__tests__/analysis/dependency-health.test.d.ts.map +1 -0
  95. package/dist/src/__tests__/analysis/dependency-health.test.js +96 -0
  96. package/dist/src/__tests__/analysis/dependency-health.test.js.map +1 -0
  97. package/dist/src/__tests__/analysis/file-classifier.test.d.ts +2 -0
  98. package/dist/src/__tests__/analysis/file-classifier.test.d.ts.map +1 -0
  99. package/dist/src/__tests__/analysis/file-classifier.test.js +49 -0
  100. package/dist/src/__tests__/analysis/file-classifier.test.js.map +1 -0
  101. package/dist/src/__tests__/analysis/node-similarity.test.d.ts +2 -0
  102. package/dist/src/__tests__/analysis/node-similarity.test.d.ts.map +1 -0
  103. package/dist/src/__tests__/analysis/node-similarity.test.js +66 -0
  104. package/dist/src/__tests__/analysis/node-similarity.test.js.map +1 -0
  105. package/dist/src/__tests__/cache/augment-cache.test.d.ts +2 -0
  106. package/dist/src/__tests__/cache/augment-cache.test.d.ts.map +1 -0
  107. package/dist/src/__tests__/cache/augment-cache.test.js +47 -0
  108. package/dist/src/__tests__/cache/augment-cache.test.js.map +1 -0
  109. package/dist/src/__tests__/cli/check-update.test.d.ts +2 -0
  110. package/dist/src/__tests__/cli/check-update.test.d.ts.map +1 -0
  111. package/dist/src/__tests__/cli/check-update.test.js +38 -0
  112. package/dist/src/__tests__/cli/check-update.test.js.map +1 -0
  113. package/dist/src/__tests__/cli/hooks-install.test.d.ts +2 -0
  114. package/dist/src/__tests__/cli/hooks-install.test.d.ts.map +1 -0
  115. package/dist/src/__tests__/cli/hooks-install.test.js +48 -0
  116. package/dist/src/__tests__/cli/hooks-install.test.js.map +1 -0
  117. package/dist/src/__tests__/cli/hooks-marker.test.d.ts +2 -0
  118. package/dist/src/__tests__/cli/hooks-marker.test.d.ts.map +1 -0
  119. package/dist/src/__tests__/cli/hooks-marker.test.js +115 -0
  120. package/dist/src/__tests__/cli/hooks-marker.test.js.map +1 -0
  121. package/dist/src/__tests__/cli/hooks-status.test.d.ts +2 -0
  122. package/dist/src/__tests__/cli/hooks-status.test.d.ts.map +1 -0
  123. package/dist/src/__tests__/cli/hooks-status.test.js +36 -0
  124. package/dist/src/__tests__/cli/hooks-status.test.js.map +1 -0
  125. package/dist/src/__tests__/export/adjacency-matrix.test.d.ts +2 -0
  126. package/dist/src/__tests__/export/adjacency-matrix.test.d.ts.map +1 -0
  127. package/dist/src/__tests__/export/adjacency-matrix.test.js +103 -0
  128. package/dist/src/__tests__/export/adjacency-matrix.test.js.map +1 -0
  129. package/dist/src/__tests__/export/csv.test.d.ts +2 -0
  130. package/dist/src/__tests__/export/csv.test.d.ts.map +1 -0
  131. package/dist/src/__tests__/export/csv.test.js +34 -0
  132. package/dist/src/__tests__/export/csv.test.js.map +1 -0
  133. package/dist/src/__tests__/export/dot.test.d.ts +2 -0
  134. package/dist/src/__tests__/export/dot.test.d.ts.map +1 -0
  135. package/dist/src/__tests__/export/dot.test.js +73 -0
  136. package/dist/src/__tests__/export/dot.test.js.map +1 -0
  137. package/dist/src/__tests__/export/gexf.test.d.ts +2 -0
  138. package/dist/src/__tests__/export/gexf.test.d.ts.map +1 -0
  139. package/dist/src/__tests__/export/gexf.test.js +66 -0
  140. package/dist/src/__tests__/export/gexf.test.js.map +1 -0
  141. package/dist/src/__tests__/export/graphml.test.d.ts +2 -0
  142. package/dist/src/__tests__/export/graphml.test.d.ts.map +1 -0
  143. package/dist/src/__tests__/export/graphml.test.js +51 -0
  144. package/dist/src/__tests__/export/graphml.test.js.map +1 -0
  145. package/dist/src/__tests__/export/mermaid.test.d.ts +2 -0
  146. package/dist/src/__tests__/export/mermaid.test.d.ts.map +1 -0
  147. package/dist/src/__tests__/export/mermaid.test.js +78 -0
  148. package/dist/src/__tests__/export/mermaid.test.js.map +1 -0
  149. package/dist/src/__tests__/graph/betweenness.test.d.ts +2 -0
  150. package/dist/src/__tests__/graph/betweenness.test.d.ts.map +1 -0
  151. package/dist/src/__tests__/graph/betweenness.test.js +77 -0
  152. package/dist/src/__tests__/graph/betweenness.test.js.map +1 -0
  153. package/dist/src/__tests__/graph/cycles.test.d.ts +2 -0
  154. package/dist/src/__tests__/graph/cycles.test.d.ts.map +1 -0
  155. package/dist/src/__tests__/graph/cycles.test.js +119 -0
  156. package/dist/src/__tests__/graph/cycles.test.js.map +1 -0
  157. package/dist/src/__tests__/graph/dead-code.test.d.ts +2 -0
  158. package/dist/src/__tests__/graph/dead-code.test.d.ts.map +1 -0
  159. package/dist/src/__tests__/graph/dead-code.test.js +89 -0
  160. package/dist/src/__tests__/graph/dead-code.test.js.map +1 -0
  161. package/dist/src/__tests__/graph/dfs.test.d.ts +2 -0
  162. package/dist/src/__tests__/graph/dfs.test.d.ts.map +1 -0
  163. package/dist/src/__tests__/graph/dfs.test.js +56 -0
  164. package/dist/src/__tests__/graph/dfs.test.js.map +1 -0
  165. package/dist/src/__tests__/graph/diff-summary.test.d.ts +2 -0
  166. package/dist/src/__tests__/graph/diff-summary.test.d.ts.map +1 -0
  167. package/dist/src/__tests__/graph/diff-summary.test.js +74 -0
  168. package/dist/src/__tests__/graph/diff-summary.test.js.map +1 -0
  169. package/dist/src/__tests__/graph/edge-filter.test.d.ts +2 -0
  170. package/dist/src/__tests__/graph/edge-filter.test.d.ts.map +1 -0
  171. package/dist/src/__tests__/graph/edge-filter.test.js +117 -0
  172. package/dist/src/__tests__/graph/edge-filter.test.js.map +1 -0
  173. package/dist/src/__tests__/graph/import-chain.test.d.ts +2 -0
  174. package/dist/src/__tests__/graph/import-chain.test.d.ts.map +1 -0
  175. package/dist/src/__tests__/graph/import-chain.test.js +101 -0
  176. package/dist/src/__tests__/graph/import-chain.test.js.map +1 -0
  177. package/dist/src/__tests__/graph/merge.test.d.ts +2 -0
  178. package/dist/src/__tests__/graph/merge.test.d.ts.map +1 -0
  179. package/dist/src/__tests__/graph/merge.test.js +132 -0
  180. package/dist/src/__tests__/graph/merge.test.js.map +1 -0
  181. package/dist/src/__tests__/graph/node-search.test.d.ts +2 -0
  182. package/dist/src/__tests__/graph/node-search.test.d.ts.map +1 -0
  183. package/dist/src/__tests__/graph/node-search.test.js +127 -0
  184. package/dist/src/__tests__/graph/node-search.test.js.map +1 -0
  185. package/dist/src/__tests__/graph/normalize-id.test.d.ts +2 -0
  186. package/dist/src/__tests__/graph/normalize-id.test.d.ts.map +1 -0
  187. package/dist/src/__tests__/graph/normalize-id.test.js +88 -0
  188. package/dist/src/__tests__/graph/normalize-id.test.js.map +1 -0
  189. package/dist/src/__tests__/graph/pagerank.test.d.ts +2 -0
  190. package/dist/src/__tests__/graph/pagerank.test.d.ts.map +1 -0
  191. package/dist/src/__tests__/graph/pagerank.test.js +87 -0
  192. package/dist/src/__tests__/graph/pagerank.test.js.map +1 -0
  193. package/dist/src/__tests__/graph/prune.test.d.ts +2 -0
  194. package/dist/src/__tests__/graph/prune.test.d.ts.map +1 -0
  195. package/dist/src/__tests__/graph/prune.test.js +98 -0
  196. package/dist/src/__tests__/graph/prune.test.js.map +1 -0
  197. package/dist/src/__tests__/graph/regex-search.test.d.ts +2 -0
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  200. package/dist/src/__tests__/graph/regex-search.test.js.map +1 -0
  201. package/dist/src/__tests__/graph/ripple-impact.test.d.ts +2 -0
  202. package/dist/src/__tests__/graph/ripple-impact.test.d.ts.map +1 -0
  203. package/dist/src/__tests__/graph/ripple-impact.test.js +64 -0
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  205. package/dist/src/__tests__/graph/scc.test.d.ts +2 -0
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  209. package/dist/src/__tests__/graph/statistics.test.d.ts +2 -0
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  212. package/dist/src/__tests__/graph/statistics.test.js.map +1 -0
  213. package/dist/src/__tests__/graph/subgraph.test.d.ts +2 -0
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  217. package/dist/src/__tests__/graph/topo-sort.test.d.ts +2 -0
  218. package/dist/src/__tests__/graph/topo-sort.test.d.ts.map +1 -0
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  220. package/dist/src/__tests__/graph/topo-sort.test.js.map +1 -0
  221. package/dist/src/__tests__/graph/wcc.test.d.ts +2 -0
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  223. package/dist/src/__tests__/graph/wcc.test.js +91 -0
  224. package/dist/src/__tests__/graph/wcc.test.js.map +1 -0
  225. package/dist/src/__tests__/groups/grpc-extractor.test.d.ts +2 -0
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  229. package/dist/src/__tests__/groups/service-boundary.test.d.ts +2 -0
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  233. package/dist/src/__tests__/groups/topic-extractor.test.d.ts +2 -0
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  253. package/dist/src/__tests__/mcp-resources/repo-context-resource.test.d.ts +2 -0
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  261. package/dist/src/__tests__/mcp-resources/wiki-resource.test.d.ts +2 -0
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  265. package/dist/src/__tests__/mcp-tools/embed.test.d.ts +2 -0
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  269. package/dist/src/__tests__/mcp-tools/explain.test.d.ts +2 -0
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  273. package/dist/src/__tests__/mcp-tools/graph-query.test.d.ts +2 -0
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  277. package/dist/src/__tests__/mcp-tools/group-sync.test.d.ts +2 -0
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@@ -9,13 +9,17 @@ export interface MroOutput {
9
9
 
10
10
  export const mroPhase: PipelinePhase<MroOutput> = {
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11
  name: 'mro',
12
- deps: ['cross-file'],
12
+ deps: ['parse'],
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13
  async execute(_ctx, deps) {
14
14
  const { allEdges, symbolNodes } = deps.get('parse') as ParseOutput;
15
15
 
16
+ // Method nodes — used to filter CONTAINS edges (the relation actually emitted by the extractor)
17
+ const methodIds = new Set(symbolNodes.filter(n => n.label === 'Method').map(n => n.id));
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+
16
19
  const classMethodsIndex = new Map<string, string[]>();
17
20
  for (const edge of allEdges) {
18
- if (edge.relation === 'HAS_METHOD') {
21
+ // Extractor emits CONTAINS for method-in-class; HAS_METHOD is never produced
22
+ if (edge.relation === 'CONTAINS' && methodIds.has(edge.targetId)) {
19
23
  const methods = classMethodsIndex.get(edge.sourceId) ?? [];
20
24
  methods.push(edge.targetId);
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25
  classMethodsIndex.set(edge.sourceId, methods);
@@ -0,0 +1,503 @@
1
+ import { readFileSync, statSync } from 'fs';
2
+ import { extname, basename } from 'path';
3
+ import type { PipelinePhase } from '../types.js';
4
+ import type { MonographNode, MonographEdge } from '../../types.js';
5
+ import { makeId, toNormLabel } from '../../types.js';
6
+ import { insertNodes } from '../../storage/node-store.js';
7
+ import { insertEdges } from '../../storage/edge-store.js';
8
+ import type { StructureOutput } from './structure.js';
9
+
10
+ // ── Output types ──────────────────────────────────────────────────────────────
11
+
12
+ export interface FieldDef {
13
+ name: string;
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+ type: string;
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+ fieldNodeId: string;
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+ }
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+
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+ export interface EntityDef {
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+ name: string;
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+ filePath: string;
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+ fields: FieldDef[];
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+ entityNodeId: string;
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+ }
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+
25
+ export interface OrmOutput {
26
+ entities: EntityDef[];
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+ }
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+
29
+ // ── Supported code extensions ─────────────────────────────────────────────────
30
+
31
+ const TS_JS_EXTENSIONS = new Set(['.ts', '.tsx', '.js', '.jsx', '.mjs', '.cjs']);
32
+
33
+ // ── Regex patterns ────────────────────────────────────────────────────────────
34
+
35
+ /** TypeORM: @Entity() decorator before a class */
36
+ const TYPEORM_ENTITY_RE = /@Entity\s*\([^)]*\)\s*(?:export\s+)?(?:abstract\s+)?class\s+(\w+)/g;
37
+
38
+ /** TypeORM/MikroORM column decorator (matches the decorator line only) */
39
+ const TYPEORM_COLUMN_DECORATOR_RE = /@(?:Primary(?:Generated)?Column|Column|CreateDateColumn|UpdateDateColumn|DeleteDateColumn|Property|PrimaryKey|ManyToOne|OneToMany|ManyToMany|OneToOne)\s*\([^)]*\)/g;
40
+
41
+ /** Property declaration after a TypeORM column decorator */
42
+ const TYPEORM_PROP_RE = /(\w+)\s*[!?]?\s*:\s*(\w+)/;
43
+
44
+ /** Prisma model block: model Name { ... } */
45
+ const PRISMA_MODEL_RE = /^model\s+(\w+)\s*\{([^}]+)\}/gm;
46
+
47
+ /** Prisma field line inside a model block */
48
+ const PRISMA_FIELD_RE = /^\s+(\w+)\s+(\w+)/gm;
49
+
50
+ /** Mongoose: const XxxSchema = new Schema({ */
51
+ const MONGOOSE_SCHEMA_RE = /(?:const|let|var)\s+(\w*[Ss]chema)\s*=\s*new\s+(?:\w+\.)?Schema\s*\(\s*\{/g;
52
+
53
+ /** Mongoose field inside a Schema object: fieldName: { type: SomeType } or fieldName: SomeType */
54
+ const MONGOOSE_FIELD_RE = /(\w+)\s*:\s*(?:\{[^}]*type\s*:\s*(\w+)|(\w+))/g;
55
+
56
+ /** Sequelize: class Foo extends Model (or extends Model.Model) */
57
+ const SEQUELIZE_CLASS_RE = /class\s+(\w+)\s+extends\s+(?:\w+\.)?Model\b/g;
58
+
59
+ /** Sequelize Model.init({ field: ... }, { sequelize }) — capture the first arg block */
60
+ const SEQUELIZE_INIT_RE = /(\w+)\.init\s*\(\s*\{/g;
61
+
62
+ /** Sequelize sequelize.define('ModelName', { ... }) */
63
+ const SEQUELIZE_DEFINE_RE = /\.define\s*\(\s*['"](\w+)['"]\s*,\s*\{/g;
64
+
65
+ /** Sequelize field inside init/define block: fieldName: DataTypes.X or fieldName: { type: DataTypes.X } */
66
+ const SEQUELIZE_FIELD_RE = /(\w+)\s*:\s*(?:\{[^}]*type\s*:\s*(?:DataTypes\.)?(\w+)|(?:DataTypes\.)?(\w+))/g;
67
+
68
+ /** SQLAlchemy: class Foo(Base) or class Foo(db.Model) etc. */
69
+ const SQLALCHEMY_CLASS_RE = /class\s+(\w+)\s*\([^)]*Base[^)]*\)/g;
70
+
71
+ /** SQLAlchemy column: fieldName = Column( */
72
+ const SQLALCHEMY_COLUMN_RE = /(\w+)\s*(?::\s*[\w\[\]]+)?\s*=\s*Column\s*\(/g;
73
+
74
+ // ── Phase ─────────────────────────────────────────────────────────────────────
75
+
76
+ export const ormPhase: PipelinePhase<OrmOutput> = {
77
+ name: 'orm',
78
+ deps: ['parse', 'structure'],
79
+ async execute(ctx, deps) {
80
+ const { fileNodes } = deps.get('structure') as StructureOutput;
81
+ const entities: EntityDef[] = [];
82
+ const entityNodes: MonographNode[] = [];
83
+ const fieldNodes: MonographNode[] = [];
84
+ const hasFieldEdges: MonographEdge[] = [];
85
+
86
+ for (const fileNode of fileNodes) {
87
+ const relPath = fileNode.filePath ?? '';
88
+ const ext = extname(relPath).toLowerCase();
89
+ const fileName = basename(relPath);
90
+
91
+ const isPrisma = fileName.endsWith('.prisma');
92
+ const isPython = ext === '.py';
93
+ const isTsJs = TS_JS_EXTENSIONS.has(ext);
94
+
95
+ if (!isPrisma && !isPython && !isTsJs) continue;
96
+
97
+ const source = safeReadSource(`${ctx.repoPath}/${relPath}`, ctx.options.maxFileSizeBytes);
98
+ if (!source) continue;
99
+
100
+ const language = isPrisma ? 'prisma' : isPython ? 'python' : langFromExt(ext);
101
+
102
+ if (isPrisma) {
103
+ detectPrismaEntities(source, relPath, language, entities, entityNodes, fieldNodes, hasFieldEdges);
104
+ } else if (isPython) {
105
+ detectSQLAlchemyEntities(source, relPath, language, entities, entityNodes, fieldNodes, hasFieldEdges);
106
+ } else {
107
+ // TypeORM/MikroORM and Mongoose and Sequelize for TS/JS files
108
+ detectTypeOrmEntities(source, relPath, language, entities, entityNodes, fieldNodes, hasFieldEdges);
109
+ detectMongooseEntities(source, relPath, language, entities, entityNodes, fieldNodes, hasFieldEdges);
110
+ detectSequelizeEntities(source, relPath, language, entities, entityNodes, fieldNodes, hasFieldEdges);
111
+ }
112
+ }
113
+
114
+ if (ctx.db) {
115
+ insertNodes(ctx.db, entityNodes);
116
+ insertNodes(ctx.db, fieldNodes);
117
+ insertEdges(ctx.db, hasFieldEdges);
118
+ }
119
+
120
+ return { entities };
121
+ },
122
+ };
123
+
124
+ // ── Detectors ─────────────────────────────────────────────────────────────────
125
+
126
+ function detectTypeOrmEntities(
127
+ source: string,
128
+ filePath: string,
129
+ language: string,
130
+ entities: EntityDef[],
131
+ entityNodes: MonographNode[],
132
+ fieldNodes: MonographNode[],
133
+ edges: MonographEdge[],
134
+ ): void {
135
+ const entityRe = new RegExp(TYPEORM_ENTITY_RE.source, 'g');
136
+ let m: RegExpExecArray | null;
137
+
138
+ while ((m = entityRe.exec(source)) !== null) {
139
+ const entityName = m[1];
140
+ const entityNodeId = makeId('entity', entityName + filePath);
141
+
142
+ const entityNode: MonographNode = {
143
+ id: entityNodeId,
144
+ label: 'Entity',
145
+ name: entityName,
146
+ normLabel: toNormLabel(entityName),
147
+ filePath,
148
+ startLine: 0,
149
+ endLine: 0,
150
+ isExported: true,
151
+ language,
152
+ };
153
+ entityNodes.push(entityNode);
154
+
155
+ const fields: FieldDef[] = [];
156
+ // Use a per-call local regex to avoid shared lastIndex state on the module-level global
157
+ const colDecRe = new RegExp(TYPEORM_COLUMN_DECORATOR_RE.source, 'g');
158
+ const lines = source.split('\n');
159
+ for (let i = 0; i < lines.length; i++) {
160
+ const line = lines[i];
161
+ if (colDecRe.test(line)) {
162
+ colDecRe.lastIndex = 0; // reset after test
163
+ // Look at the next non-empty line for the property declaration
164
+ for (let j = i + 1; j < Math.min(i + 4, lines.length); j++) {
165
+ const propLine = lines[j].trim();
166
+ if (!propLine || propLine.startsWith('@') || propLine.startsWith('//')) continue;
167
+ const pm = TYPEORM_PROP_RE.exec(propLine);
168
+ if (pm) {
169
+ addField(entityName, pm[1], pm[2], filePath, language, entityNodeId, fields, fieldNodes, edges);
170
+ }
171
+ break;
172
+ }
173
+ }
174
+ colDecRe.lastIndex = 0; // always reset
175
+ }
176
+
177
+ entities.push({ name: entityName, filePath, fields, entityNodeId });
178
+ }
179
+ }
180
+
181
+ function detectPrismaEntities(
182
+ source: string,
183
+ filePath: string,
184
+ language: string,
185
+ entities: EntityDef[],
186
+ entityNodes: MonographNode[],
187
+ fieldNodes: MonographNode[],
188
+ edges: MonographEdge[],
189
+ ): void {
190
+ const modelRe = new RegExp(PRISMA_MODEL_RE.source, 'gm');
191
+ let m: RegExpExecArray | null;
192
+
193
+ while ((m = modelRe.exec(source)) !== null) {
194
+ const entityName = m[1];
195
+ const body = m[2];
196
+ const entityNodeId = makeId('entity', entityName + filePath);
197
+
198
+ const entityNode: MonographNode = {
199
+ id: entityNodeId,
200
+ label: 'Entity',
201
+ name: entityName,
202
+ normLabel: toNormLabel(entityName),
203
+ filePath,
204
+ startLine: 0,
205
+ endLine: 0,
206
+ isExported: true,
207
+ language,
208
+ };
209
+ entityNodes.push(entityNode);
210
+
211
+ const fields: FieldDef[] = [];
212
+ const fieldRe = new RegExp(PRISMA_FIELD_RE.source, 'gm');
213
+ let fm: RegExpExecArray | null;
214
+
215
+ while ((fm = fieldRe.exec(body)) !== null) {
216
+ const fieldName = fm[1];
217
+ const fieldType = fm[2];
218
+ // Skip Prisma keywords
219
+ if (['model', 'enum', 'type', 'datasource', 'generator'].includes(fieldName)) continue;
220
+ addField(entityName, fieldName, fieldType, filePath, language, entityNodeId, fields, fieldNodes, edges);
221
+ }
222
+
223
+ entities.push({ name: entityName, filePath, fields, entityNodeId });
224
+ }
225
+ }
226
+
227
+ function detectMongooseEntities(
228
+ source: string,
229
+ filePath: string,
230
+ language: string,
231
+ entities: EntityDef[],
232
+ entityNodes: MonographNode[],
233
+ fieldNodes: MonographNode[],
234
+ edges: MonographEdge[],
235
+ ): void {
236
+ const schemaRe = new RegExp(MONGOOSE_SCHEMA_RE.source, 'g');
237
+ let m: RegExpExecArray | null;
238
+
239
+ while ((m = schemaRe.exec(source)) !== null) {
240
+ const schemaVarName = m[1];
241
+ // Remove 'Schema' suffix to get entity name
242
+ const entityName = schemaVarName.replace(/[Ss]chema$/, '') || schemaVarName;
243
+ const entityNodeId = makeId('entity', entityName + filePath);
244
+
245
+ const entityNode: MonographNode = {
246
+ id: entityNodeId,
247
+ label: 'Entity',
248
+ name: entityName,
249
+ normLabel: toNormLabel(entityName),
250
+ filePath,
251
+ startLine: 0,
252
+ endLine: 0,
253
+ isExported: true,
254
+ language,
255
+ };
256
+ entityNodes.push(entityNode);
257
+
258
+ // Extract a block after the Schema({ starting point
259
+ const blockStart = m.index + m[0].length;
260
+ const block = extractBraceBlock(source, blockStart - 1, 4000);
261
+
262
+ const fields: FieldDef[] = [];
263
+ if (block) {
264
+ const fieldRe = new RegExp(MONGOOSE_FIELD_RE.source, 'g');
265
+ let fm: RegExpExecArray | null;
266
+ const seen = new Set<string>();
267
+ while ((fm = fieldRe.exec(block)) !== null) {
268
+ const fieldName = fm[1];
269
+ const fieldType = fm[2] ?? fm[3] ?? 'Mixed';
270
+ if (seen.has(fieldName)) continue;
271
+ // Skip obvious non-field keys
272
+ if (['type', 'required', 'default', 'ref', 'index', 'unique', 'enum'].includes(fieldName)) continue;
273
+ seen.add(fieldName);
274
+ addField(entityName, fieldName, fieldType, filePath, language, entityNodeId, fields, fieldNodes, edges);
275
+ }
276
+ }
277
+
278
+ entities.push({ name: entityName, filePath, fields, entityNodeId });
279
+ }
280
+ }
281
+
282
+ function detectSequelizeEntities(
283
+ source: string,
284
+ filePath: string,
285
+ language: string,
286
+ entities: EntityDef[],
287
+ entityNodes: MonographNode[],
288
+ fieldNodes: MonographNode[],
289
+ edges: MonographEdge[],
290
+ ): void {
291
+ // Track entity names we've already registered to avoid duplicates.
292
+ const registeredNames = new Set<string>();
293
+
294
+ function registerEntity(entityName: string): string {
295
+ const entityNodeId = makeId('entity', entityName + filePath);
296
+ if (registeredNames.has(entityName)) return entityNodeId;
297
+ registeredNames.add(entityName);
298
+
299
+ const entityNode: MonographNode = {
300
+ id: entityNodeId,
301
+ label: 'Entity',
302
+ name: entityName,
303
+ normLabel: toNormLabel(entityName),
304
+ filePath,
305
+ startLine: 0,
306
+ endLine: 0,
307
+ isExported: true,
308
+ language,
309
+ };
310
+ entityNodes.push(entityNode);
311
+ return entityNodeId;
312
+ }
313
+
314
+ // Collect class names that extend Model so we can match them in .init() calls.
315
+ const modelClasses = new Set<string>();
316
+ const classRe = new RegExp(SEQUELIZE_CLASS_RE.source, 'g');
317
+ let cm: RegExpExecArray | null;
318
+ while ((cm = classRe.exec(source)) !== null) {
319
+ modelClasses.add(cm[1]);
320
+ }
321
+
322
+ // Handle: ClassName.init({ ... }, { sequelize })
323
+ const initRe = new RegExp(SEQUELIZE_INIT_RE.source, 'g');
324
+ let im: RegExpExecArray | null;
325
+ while ((im = initRe.exec(source)) !== null) {
326
+ const candidateName = im[1];
327
+ // Only treat as Sequelize if it's a known Model subclass OR if DataTypes appears in the block.
328
+ const blockStart = im.index + im[0].length - 1; // position of the opening '{'
329
+ const block = extractBraceBlock(source, blockStart, 4000);
330
+ if (!block) continue;
331
+ if (!modelClasses.has(candidateName) && !block.includes('DataTypes')) continue;
332
+
333
+ const entityNodeId = registerEntity(candidateName);
334
+ const fields: FieldDef[] = [];
335
+ const fieldRe = new RegExp(SEQUELIZE_FIELD_RE.source, 'g');
336
+ let fm: RegExpExecArray | null;
337
+ const seen = new Set<string>();
338
+ while ((fm = fieldRe.exec(block)) !== null) {
339
+ const fieldName = fm[1];
340
+ const fieldType = fm[2] ?? fm[3] ?? 'DataType';
341
+ if (seen.has(fieldName)) continue;
342
+ if (['type', 'allowNull', 'defaultValue', 'primaryKey', 'unique', 'references'].includes(fieldName)) continue;
343
+ seen.add(fieldName);
344
+ addField(candidateName, fieldName, fieldType, filePath, language, entityNodeId, fields, fieldNodes, edges);
345
+ }
346
+ entities.push({ name: candidateName, filePath, fields, entityNodeId });
347
+ }
348
+
349
+ // Handle: sequelize.define('ModelName', { ... })
350
+ const defineRe = new RegExp(SEQUELIZE_DEFINE_RE.source, 'g');
351
+ let dm: RegExpExecArray | null;
352
+ while ((dm = defineRe.exec(source)) !== null) {
353
+ const entityName = dm[1];
354
+ const blockStart = dm.index + dm[0].length - 1;
355
+ const block = extractBraceBlock(source, blockStart, 4000);
356
+
357
+ const entityNodeId = registerEntity(entityName);
358
+ const fields: FieldDef[] = [];
359
+ if (block) {
360
+ const fieldRe = new RegExp(SEQUELIZE_FIELD_RE.source, 'g');
361
+ let fm: RegExpExecArray | null;
362
+ const seen = new Set<string>();
363
+ while ((fm = fieldRe.exec(block)) !== null) {
364
+ const fieldName = fm[1];
365
+ const fieldType = fm[2] ?? fm[3] ?? 'DataType';
366
+ if (seen.has(fieldName)) continue;
367
+ if (['type', 'allowNull', 'defaultValue', 'primaryKey', 'unique', 'references'].includes(fieldName)) continue;
368
+ seen.add(fieldName);
369
+ addField(entityName, fieldName, fieldType, filePath, language, entityNodeId, fields, fieldNodes, edges);
370
+ }
371
+ }
372
+ entities.push({ name: entityName, filePath, fields, entityNodeId });
373
+ }
374
+ }
375
+
376
+ function detectSQLAlchemyEntities(
377
+ source: string,
378
+ filePath: string,
379
+ language: string,
380
+ entities: EntityDef[],
381
+ entityNodes: MonographNode[],
382
+ fieldNodes: MonographNode[],
383
+ edges: MonographEdge[],
384
+ ): void {
385
+ const classRe = new RegExp(SQLALCHEMY_CLASS_RE.source, 'g');
386
+ let m: RegExpExecArray | null;
387
+
388
+ while ((m = classRe.exec(source)) !== null) {
389
+ const entityName = m[1];
390
+ const entityNodeId = makeId('entity', entityName + filePath);
391
+
392
+ const entityNode: MonographNode = {
393
+ id: entityNodeId,
394
+ label: 'Entity',
395
+ name: entityName,
396
+ normLabel: toNormLabel(entityName),
397
+ filePath,
398
+ startLine: 0,
399
+ endLine: 0,
400
+ isExported: true,
401
+ language,
402
+ };
403
+ entityNodes.push(entityNode);
404
+
405
+ const fields: FieldDef[] = [];
406
+ // Scope column scan to this class's body — slice from the match end to the next
407
+ // unindented `class ` keyword or end-of-string to avoid assigning columns from
408
+ // other classes to this entity.
409
+ const classBodyStart = m.index + m[0].length;
410
+ const nextClassIdx = source.indexOf('\nclass ', classBodyStart);
411
+ const classBody = nextClassIdx >= 0 ? source.slice(classBodyStart, nextClassIdx) : source.slice(classBodyStart);
412
+ const columnRe = new RegExp(SQLALCHEMY_COLUMN_RE.source, 'g');
413
+ let cm: RegExpExecArray | null;
414
+ while ((cm = columnRe.exec(classBody)) !== null) {
415
+ const fieldName = cm[1];
416
+ addField(entityName, fieldName, 'Column', filePath, language, entityNodeId, fields, fieldNodes, edges);
417
+ }
418
+
419
+ entities.push({ name: entityName, filePath, fields, entityNodeId });
420
+ }
421
+ }
422
+
423
+ // ── Helpers ───────────────────────────────────────────────────────────────────
424
+
425
+ function addField(
426
+ entityName: string,
427
+ fieldName: string,
428
+ fieldType: string,
429
+ filePath: string,
430
+ language: string,
431
+ entityNodeId: string,
432
+ fields: FieldDef[],
433
+ fieldNodes: MonographNode[],
434
+ edges: MonographEdge[],
435
+ ): void {
436
+ const fieldNodeId = makeId('field', entityName + fieldName + filePath);
437
+
438
+ const fieldNode: MonographNode = {
439
+ id: fieldNodeId,
440
+ label: 'Field',
441
+ name: fieldName,
442
+ normLabel: toNormLabel(fieldName),
443
+ filePath,
444
+ startLine: 0,
445
+ endLine: 0,
446
+ isExported: false,
447
+ language,
448
+ properties: { declaredType: fieldType },
449
+ };
450
+ fieldNodes.push(fieldNode);
451
+
452
+ const edgeId = makeId(entityNodeId, fieldNodeId, 'has_field');
453
+ edges.push({
454
+ id: edgeId,
455
+ sourceId: entityNodeId,
456
+ targetId: fieldNodeId,
457
+ relation: 'HAS_FIELD',
458
+ confidence: 'EXTRACTED',
459
+ confidenceScore: 0.9,
460
+ });
461
+
462
+ fields.push({ name: fieldName, type: fieldType, fieldNodeId });
463
+ }
464
+
465
+ /**
466
+ * Extracts a balanced brace block from source starting at the position of the
467
+ * opening `{`. Returns the content between the braces (not including the braces).
468
+ */
469
+ function extractBraceBlock(source: string, openPos: number, maxLen: number): string | undefined {
470
+ // Find the opening brace at or after openPos
471
+ let start = source.indexOf('{', openPos);
472
+ if (start === -1) return undefined;
473
+
474
+ let depth = 0;
475
+ let i = start;
476
+ const end = Math.min(start + maxLen, source.length);
477
+
478
+ for (; i < end; i++) {
479
+ if (source[i] === '{') depth++;
480
+ else if (source[i] === '}') {
481
+ depth--;
482
+ if (depth === 0) return source.slice(start + 1, i);
483
+ }
484
+ }
485
+ // Return partial block if not closed within maxLen
486
+ return source.slice(start + 1, i);
487
+ }
488
+
489
+ function safeReadSource(absPath: string, maxBytes: number): string | undefined {
490
+ try {
491
+ const stat = statSync(absPath);
492
+ if (stat.size > maxBytes) return undefined;
493
+ return readFileSync(absPath, 'utf-8');
494
+ } catch {
495
+ return undefined;
496
+ }
497
+ }
498
+
499
+ function langFromExt(ext: string): string {
500
+ if (ext === '.ts' || ext === '.tsx') return 'typescript';
501
+ if (ext === '.js' || ext === '.jsx' || ext === '.mjs' || ext === '.cjs') return 'javascript';
502
+ return 'unknown';
503
+ }
@@ -6,11 +6,13 @@ import { parseFile } from '../../parsers/loader.js';
6
6
  import { insertNodes } from '../../storage/node-store.js';
7
7
  import { insertEdges } from '../../storage/edge-store.js';
8
8
  import type { StructureOutput } from './structure.js';
9
+ import { extractVariables, variableToNode } from './variables.js';
9
10
 
10
11
  export interface ParseOutput {
11
12
  symbolNodes: MonographNode[];
12
13
  allEdges: MonographEdge[];
13
14
  parseErrors: string[];
15
+ fileContents: Map<string, string>;
14
16
  }
15
17
 
16
18
  export const parsePhase: PipelinePhase<ParseOutput> = {
@@ -21,6 +23,7 @@ export const parsePhase: PipelinePhase<ParseOutput> = {
21
23
  const symbolNodes: MonographNode[] = [];
22
24
  const allEdges: MonographEdge[] = [];
23
25
  const parseErrors: string[] = [];
26
+ const fileContents = new Map<string, string>();
24
27
  let processed = 0;
25
28
 
26
29
  for (const fileNode of fileNodes) {
@@ -34,12 +37,49 @@ export const parsePhase: PipelinePhase<ParseOutput> = {
34
37
  continue;
35
38
  }
36
39
  source = readFileSync(absPath, 'utf-8');
40
+ fileContents.set(fileNode.filePath ?? absPath, source);
37
41
  } catch { continue; }
38
42
 
39
43
  const result = await parseFile(absPath, source, fileNode.filePath ?? '');
40
44
  symbolNodes.push(...result.nodes);
41
45
  allEdges.push(...result.edges);
42
46
  parseErrors.push(...result.parseErrors);
47
+
48
+ // Extract C# namespace declarations
49
+ if (ext === '.cs') {
50
+ const csNamespaces = extractCsharpNamespaces(source, fileNode.filePath ?? '');
51
+ for (const ns of csNamespaces) {
52
+ symbolNodes.push({
53
+ id: `${ns.filePath}::namespace::${ns.name}`,
54
+ name: ns.name,
55
+ label: 'Namespace',
56
+ normLabel: 'namespace',
57
+ filePath: ns.filePath,
58
+ line: ns.line,
59
+ isExported: true,
60
+ } as import('../../types.js').MonographNode);
61
+ }
62
+ }
63
+
64
+ // Extract top-level variable declarations for TS/JS files
65
+ if (['.ts', '.tsx', '.js', '.jsx'].includes(ext)) {
66
+ const varInfos = extractVariables(source, fileNode.filePath ?? '');
67
+ symbolNodes.push(...varInfos.map(v => variableToNode(v)));
68
+
69
+ // Extract named arrow functions
70
+ const arrowFns = extractArrowFunctions(source, fileNode.filePath ?? '');
71
+ for (const fn of arrowFns) {
72
+ symbolNodes.push({
73
+ id: `${fn.filePath}::fn::${fn.name}`,
74
+ name: fn.name,
75
+ label: 'Function',
76
+ normLabel: 'function',
77
+ filePath: fn.filePath,
78
+ line: fn.line,
79
+ isExported: fn.isExported,
80
+ } as import('../../types.js').MonographNode);
81
+ }
82
+ }
43
83
  processed++;
44
84
 
45
85
  if (processed % 50 === 0) {
@@ -57,6 +97,45 @@ export const parsePhase: PipelinePhase<ParseOutput> = {
57
97
  insertEdges(ctx.db, resolvableEdges);
58
98
  }
59
99
 
60
- return { symbolNodes, allEdges, parseErrors };
100
+ return { symbolNodes, allEdges, parseErrors, fileContents };
61
101
  },
62
102
  };
103
+
104
+ export function extractCsharpNamespaces(
105
+ source: string,
106
+ filePath: string,
107
+ ): Array<{ name: string; label: 'Namespace'; filePath: string; line: number }> {
108
+ const results: Array<{ name: string; label: 'Namespace'; filePath: string; line: number }> = [];
109
+ const re = /^[ \t]*namespace\s+([\w.]+)\s*[\{;]/gm;
110
+ let m: RegExpExecArray | null;
111
+ while ((m = re.exec(source)) !== null) {
112
+ const charsBefore = source.slice(0, m.index);
113
+ const line = (charsBefore.match(/\n/g)?.length ?? 0) + 1;
114
+ results.push({ name: m[1]!, label: 'Namespace', filePath, line });
115
+ }
116
+ return results;
117
+ }
118
+
119
+ export function extractArrowFunctions(
120
+ source: string,
121
+ filePath: string,
122
+ ): Array<{ name: string; isExported: boolean; line: number; filePath: string }> {
123
+ const results: Array<{ name: string; isExported: boolean; line: number; filePath: string }> = [];
124
+ // Match: (export)? const/let NAME = (async)? (...) =>
125
+ const re = /^([ \t]*)(export\s+)?(?:const|let)\s+(\w+)\s*=\s*(?:async\s*)?\([^)]*\)\s*=>/gm;
126
+
127
+ let m: RegExpExecArray | null;
128
+ re.lastIndex = 0;
129
+ while ((m = re.exec(source)) !== null) {
130
+ const charsBefore = source.slice(0, m.index);
131
+ const lineNum = (charsBefore.match(/\n/g)?.length ?? 0) + 1;
132
+ results.push({
133
+ name: m[3]!,
134
+ isExported: !!(m[2]?.trim()),
135
+ line: lineNum,
136
+ filePath,
137
+ });
138
+ }
139
+
140
+ return results;
141
+ }