@monoes/memory 1.0.14 → 1.0.16

package/dist/sql-schema.js

@@ -22,7 +22,7 @@
  * legacy column in place rather than rewriting the table.
  */
 /** Bumped when the canonical schema changes; stored in PRAGMA user_version. */
-export const SCHEMA_VERSION = 2;
+export const SCHEMA_VERSION = 3;
 /**
  * Create the canonical schema. Safe to run repeatedly.
  *
@@ -159,14 +159,99 @@ export function migrateLegacyInlineEmbeddings(driver) {
     });
     return report;
 }
+// ===== FTS5 Full-Text Search Index (Issue #66) =============================
+/**
+ * True when the FTS5 virtual table already exists.
+ */
+export function hasFTS5Table(driver) {
+    try {
+        const row = driver.get("SELECT name FROM sqlite_master WHERE type = 'table' AND name = 'memory_entries_fts'");
+        return row !== null;
+    }
+    catch {
+        return false;
+    }
+}
+/**
+ * Create FTS5 virtual table + sync triggers.  Idempotent and fail-safe:
+ *
+ *   - **FTS5 unavailable** (sql.js compiled without the extension, or very old
+ *     SQLite): the CREATE VIRTUAL TABLE will throw; we catch and return false.
+ *     Keyword search falls back to the existing JS scan — no data loss.
+ *   - **Already exists**: nothing to do; triggers are IF NOT EXISTS.
+ *   - **Existing data**: bulk-populated in a single INSERT … SELECT.
+ *
+ * The FTS5 table is standalone (not external-content) with an `entry_id`
+ * column marked UNINDEXED so `MATCH` only considers `key` and `content`.
+ * Triggers keep it in lock-step with the source table on every write.
+ *
+ * Returns true if the FTS5 table is usable after this call.
+ */
+export function createFTS5Index(driver) {
+    if (hasFTS5Table(driver))
+        return true;
+    try {
+        driver.exec(`
+      CREATE VIRTUAL TABLE memory_entries_fts USING fts5(
+        entry_id UNINDEXED,
+        key,
+        content,
+        tokenize = 'porter unicode61'
+      );
+    `);
+    }
+    catch {
+        // FTS5 extension not available on this build (common for sql.js WASM).
+        return false;
+    }
+    try {
+        // Populate from existing data.
+        driver.exec(`
+      INSERT INTO memory_entries_fts(entry_id, key, content)
+        SELECT id, key, content FROM memory_entries;
+    `);
+        // Keep in sync via triggers.
+        driver.exec(`
+      CREATE TRIGGER IF NOT EXISTS memory_entries_fts_ai
+      AFTER INSERT ON memory_entries BEGIN
+        INSERT INTO memory_entries_fts(entry_id, key, content)
+          VALUES (NEW.id, NEW.key, NEW.content);
+      END;
+
+      CREATE TRIGGER IF NOT EXISTS memory_entries_fts_ad
+      AFTER DELETE ON memory_entries BEGIN
+        DELETE FROM memory_entries_fts WHERE entry_id = OLD.id;
+      END;
+
+      CREATE TRIGGER IF NOT EXISTS memory_entries_fts_au
+      AFTER UPDATE OF key, content ON memory_entries BEGIN
+        DELETE FROM memory_entries_fts WHERE entry_id = OLD.id;
+        INSERT INTO memory_entries_fts(entry_id, key, content)
+          VALUES (NEW.id, NEW.key, NEW.content);
+      END;
+    `);
+        return true;
+    }
+    catch {
+        // Trigger or populate failed — drop the half-built FTS table so the next
+        // init attempt gets a clean retry rather than a corrupt partial index.
+        try {
+            driver.exec('DROP TABLE IF EXISTS memory_entries_fts');
+        }
+        catch { /* ignore */ }
+        return false;
+    }
+}
 /**
  * Bring a database to the canonical schema: create tables, migrate legacy
- * inline embeddings, enforce uniqueness, and record the version.
+ * inline embeddings, enforce uniqueness, build the FTS5 index, and record
+ * the version.
  */
 export function initializeSchema(driver) {
     createCanonicalSchema(driver);
     const report = migrateLegacyInlineEmbeddings(driver);
     enforceNamespaceKeyUnique(driver);
+    createFTS5Index(driver);
     try {
         driver.exec(`PRAGMA user_version = ${SCHEMA_VERSION}`);
     }

package/dist/sql-schema.js.map

@@ -1 +1 @@
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package/dist/sqlite-backend.d.ts

@@ -31,6 +31,12 @@ export interface SQLiteBackendConfig {
     maxEntries: number;
     /** Enable verbose logging */
     verbose: boolean;
+    /** SQLite busy timeout in milliseconds. When another connection holds a lock,
+     *  SQLite will wait up to this long before returning SQLITE_BUSY. Default: 0
+     *  (fail immediately). Callers sharing a database across processes (e.g. CLI
+     *  hooks and the MCP server hitting the same memory.db) should set this to
+     *  several seconds (e.g. 5000). */
+    busyTimeoutMs: number;
 }
 /**
  * SQLite backend for structured memory storage.

package/dist/sqlite-backend.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"sqlite-backend.d.ts","sourceRoot":"","sources":["../src/sqlite-backend.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAYH,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAsB,KAAK,SAAS,EAAE,MAAM,iBAAiB,CAAC;AACrE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAC;AAErD;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,4DAA4D;IAC5D,YAAY,EAAE,MAAM,CAAC;IAErB,6CAA6C;IAC7C,OAAO,EAAE,OAAO,CAAC;IAEjB,gCAAgC;IAChC,QAAQ,EAAE,OAAO,CAAC;IAElB,wBAAwB;IACxB,gBAAgB,EAAE,MAAM,CAAC;IAEzB,+DAA+D;IAC/D,kBAAkB,CAAC,EAAE,kBAAkB,CAAC;IAExC,0CAA0C;IAC1C,UAAU,EAAE,MAAM,CAAC;IAEnB,6BAA6B;IAC7B,OAAO,EAAE,OAAO,CAAC;CAClB;AAWD;;;;;GAKG;AACH,qBAAa,aAAc,SAAQ,UAAU;IAC3C,OAAO,CAAC,YAAY,CAAsB;gBAE9B,MAAM,GAAE,OAAO,CAAC,mBAAmB,CAAM;cAWrC,UAAU,IAAI,OAAO,CAAC,SAAS,CAAC;CAkCjD;AAED,eAAe,aAAa,CAAC"}
+{"version":3,"file":"sqlite-backend.d.ts","sourceRoot":"","sources":["../src/sqlite-backend.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAWH,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,OAAO,EAAsB,KAAK,SAAS,EAAE,MAAM,iBAAiB,CAAC;AACrE,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAC;AAErD;;GAEG;AACH,MAAM,WAAW,mBAAmB;IAClC,4DAA4D;IAC5D,YAAY,EAAE,MAAM,CAAC;IAErB,6CAA6C;IAC7C,OAAO,EAAE,OAAO,CAAC;IAEjB,gCAAgC;IAChC,QAAQ,EAAE,OAAO,CAAC;IAElB,wBAAwB;IACxB,gBAAgB,EAAE,MAAM,CAAC;IAEzB,+DAA+D;IAC/D,kBAAkB,CAAC,EAAE,kBAAkB,CAAC;IAExC,0CAA0C;IAC1C,UAAU,EAAE,MAAM,CAAC;IAEnB,6BAA6B;IAC7B,OAAO,EAAE,OAAO,CAAC;IAEjB;;;;uCAImC;IACnC,aAAa,EAAE,MAAM,CAAC;CACvB;AAYD;;;;;GAKG;AACH,qBAAa,aAAc,SAAQ,UAAU;IAC3C,OAAO,CAAC,YAAY,CAAsB;IAE1C,YAAY,MAAM,GAAE,OAAO,CAAC,mBAAmB,CAAM,EASpD;IAED,UAAgB,UAAU,IAAI,OAAO,CAAC,SAAS,CAAC,CAkC/C;CACF;eAEc,aAAa"}

package/dist/sqlite-backend.js

@@ -10,9 +10,8 @@
  *
  * @module v1/memory/sqlite-backend
  */
-// better-sqlite3 is an OPTIONAL dependency — sql.js is the documented fallback,
-// and database-provider.ts recommends it outright on Windows, where node-gyp
-// routinely fails to build native modules. This import must therefore be lazy.
+// better-sqlite3 is an OPTIONAL dependency — sql.js is the documented fallback
+// on platforms where native compilation is unavailable. This import must therefore be lazy.
 //
 // It used to be a static top-level import, and because index.ts re-exports
 // SQLiteBackend, that made `import '@monoes/memory'` throw
@@ -29,6 +28,7 @@ const DEFAULT_CONFIG = {
     defaultNamespace: 'default',
     maxEntries: 1000000,
     verbose: false,
+    busyTimeoutMs: 0,
 };
 /**
  * SQLite backend for structured memory storage.
@@ -65,6 +65,8 @@ export class SQLiteBackend extends SqlBackend {
         const db = new Database(this.sqliteConfig.databasePath, {
             verbose: this.sqliteConfig.verbose ? console.log : undefined,
         });
+        if (this.sqliteConfig.busyTimeoutMs > 0)
+            db.pragma(`busy_timeout = ${this.sqliteConfig.busyTimeoutMs}`);
         if (this.sqliteConfig.walMode)
             db.pragma('journal_mode = WAL');
         if (this.sqliteConfig.optimize) {

package/dist/sqlite-backend.js.map

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package/dist/sqljs-backend.d.ts

@@ -43,6 +43,10 @@ export interface SqlJsBackendConfig {
     autoPersistInterval: number;
     /** Explicit path to sql-wasm.wasm, overriding local resolution */
     wasmPath?: string;
+    /** SQLite busy timeout in milliseconds. Passed through to the driver's pragma
+     *  for parity with SQLiteBackend; largely a no-op for the in-memory sql.js
+     *  engine, but applied when the database file is shared. Default: 0. */
+    busyTimeoutMs: number;
 }
 export declare class SqlJsBackend extends SqlBackend {
     private sqlJsConfig;

package/dist/sqljs-backend.d.ts.map

@@ -1 +1 @@
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package/dist/sqljs-backend.js

@@ -51,6 +51,7 @@ const DEFAULT_CONFIG = {
     maxEntries: 1000000,
     verbose: false,
     autoPersistInterval: 5000,
+    busyTimeoutMs: 0,
 };
 export class SqlJsBackend extends SqlBackend {
     sqlJsConfig;

package/dist/sqljs-backend.js.map

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package/dist/utils/jsonl-store.d.ts

@@ -0,0 +1,17 @@
+/** Append one record as a JSONL line. */
+export declare function appendJsonl<T>(file: string, record: T): void;
+/**
+ * Read all records from a JSONL file. Never throws on a malformed line —
+ * bad lines are silently dropped, matching parse-jsonl.ts's CLI-side
+ * contract, so one corrupt line can't lose the rest of the file.
+ */
+export declare function readJsonl<T>(file: string): T[];
+/**
+ * Atomically rewrite a JSONL file from a full in-memory record set (tmp +
+ * rename, via atomic-file.ts's writeFileAtomicSync — a crash mid-write must
+ * not leave a truncated index). An empty `records` array writes a genuinely
+ * empty file, not a lone `"\n"` — the write-semantics gap that had already
+ * diverged between the two prior hand-copied implementations.
+ */
+export declare function rewriteJsonl<T>(file: string, records: T[]): void;
+//# sourceMappingURL=jsonl-store.d.ts.map

package/dist/utils/jsonl-store.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"jsonl-store.d.ts","sourceRoot":"","sources":["../../src/utils/jsonl-store.ts"],"names":[],"mappings":"AAiBA,yCAAyC;AACzC,wBAAgB,WAAW,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,GAAG,IAAI,CAE5D;AAED;;;;GAIG;AACH,wBAAgB,SAAS,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,GAAG,CAAC,EAAE,CAe9C;AAED;;;;;;GAMG;AACH,wBAAgB,YAAY,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,CAAC,EAAE,GAAG,IAAI,CAGhE"}

package/dist/utils/jsonl-store.js

@@ -0,0 +1,57 @@
+/**
+ * Shared JSONL append/read/rewrite helpers.
+ *
+ * Previously hand-copied twice in this package (knowledge-store.ts and
+ * prompt-version-store.ts) and already drifted on write semantics: an
+ * empty-collection rewrite produced a genuinely empty file in one and a
+ * one-byte `"\n"` file in the other, and both readers threw on a single
+ * corrupt line, losing the whole file — unlike the CLI package's
+ * `parseJsonl()` (utils/parse-jsonl.ts), which never throws and drops bad
+ * lines individually. This module adopts the empty-file write behavior and
+ * the tolerant read behavior as the shared contract.
+ *
+ * @module @monomind/memory/utils/jsonl-store
+ */
+import * as fs from 'node:fs';
+import { writeFileAtomicSync } from '../atomic-file.js';
+/** Append one record as a JSONL line. */
+export function appendJsonl(file, record) {
+    fs.appendFileSync(file, JSON.stringify(record) + '\n', 'utf-8');
+}
+/**
+ * Read all records from a JSONL file. Never throws on a malformed line —
+ * bad lines are silently dropped, matching parse-jsonl.ts's CLI-side
+ * contract, so one corrupt line can't lose the rest of the file.
+ */
+export function readJsonl(file) {
+    if (!fs.existsSync(file))
+        return [];
+    const content = fs.readFileSync(file, 'utf-8');
+    if (!content.trim())
+        return [];
+    const out = [];
+    for (const line of content.split('\n')) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        try {
+            out.push(JSON.parse(trimmed));
+        }
+        catch {
+            // skip malformed line — never lose the rest of the file over one bad record
+        }
+    }
+    return out;
+}
+/**
+ * Atomically rewrite a JSONL file from a full in-memory record set (tmp +
+ * rename, via atomic-file.ts's writeFileAtomicSync — a crash mid-write must
+ * not leave a truncated index). An empty `records` array writes a genuinely
+ * empty file, not a lone `"\n"` — the write-semantics gap that had already
+ * diverged between the two prior hand-copied implementations.
+ */
+export function rewriteJsonl(file, records) {
+    const data = records.length ? records.map((r) => JSON.stringify(r)).join('\n') + '\n' : '';
+    writeFileAtomicSync(file, data, 'utf-8');
+}
+//# sourceMappingURL=jsonl-store.js.map

package/dist/utils/jsonl-store.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@monoes/memory",
-  "version": "1.0.14",
+  "version": "1.0.16",
   "type": "module",
   "description": "Memory module - JSON pattern store, SQLite + embeddings backend, and a standalone pure-JS HNSW index; not a single unified backend",
   "main": "dist/index.js",
@@ -9,19 +9,10 @@
     ".": "./dist/index.js",
     "./*": "./dist/*.js"
   },
-  "scripts": {
-    "test": "vitest run",
-    "test:coverage": "vitest run --coverage",
-    "bench": "vitest bench",
-    "build": "tsc",
-    "prebuild": "node ../../../scripts/build-fs.mjs clean dist tsconfig.tsbuildinfo",
-    "prepublishOnly": "npm run build && node --input-type=module --eval \"import('./dist/index.js').then(m => { const required = ['ControllerRegistry','SQLiteBackend','UnifiedMemoryService']; const missing = required.filter(k => !m[k]); if (missing.length) { console.error('Missing exports:', missing); process.exit(1); } console.log('All required exports present'); });\""
-  },
   "dependencies": {
     "better-sqlite3": "^12.0.0",
     "sql.js": "^1.10.3"
   },
-  "optionalDependencies": {},
   "devDependencies": {
     "@types/better-sqlite3": "^7.6.11",
     "@types/sql.js": "^1.4.9",
@@ -43,5 +34,12 @@
   "cpu": [
     "x64",
     "arm64"
-  ]
-}
+  ],
+  "scripts": {
+    "test": "vitest run",
+    "test:coverage": "vitest run --coverage",
+    "bench": "vitest bench",
+    "build": "tsc",
+    "prebuild": "node ../../../scripts/build-fs.mjs clean dist tsconfig.tsbuildinfo"
+  }
+}

package/dist/controller-registry.d.ts

@@ -1,206 +0,0 @@
-/**
- * ControllerRegistry - Central controller lifecycle management for memory backend
- *
- * Wraps the configured memory backend (SQLite via better-sqlite3/sql.js as of
- * 2026-07; LanceDB support was fully removed) and adds CLI-specific controllers from
- * @monomind/memory. Manages initialization (level-based ordering), health
- * checks, and graceful shutdown.
- *
- * Per ADR-053: Replaces memory-initializer.js's raw sql.js usage with a unified
- * controller ecosystem routing all memory operations through a single backend.
- *
- * @module @monomind/memory/controller-registry
- */
-import { EventEmitter } from 'node:events';
-import type { IMemoryBackend, EmbeddingGenerator, SONAMode } from './types.js';
-import type { CacheConfig } from './types.js';
-/**
- * Memory controllers
- */
-export type MemoryControllerName = 'reasoningBank' | 'skills' | 'reflexion' | 'causalGraph' | 'causalRecall' | 'learningSystem' | 'explainableRecall' | 'nightlyLearner' | 'graphTransformer' | 'mutationGuard' | 'attestationLog' | 'vectorBackend' | 'graphAdapter';
-/**
- * CLI-layer controllers (from @monomind/memory or new)
- */
-export type CLIControllerName = 'learningBridge' | 'tieredCache' | 'hybridSearch' | 'federatedSession' | 'semanticRouter' | 'sonaTrajectory' | 'hierarchicalMemory' | 'memoryConsolidation' | 'batchOperations' | 'contextSynthesizer' | 'gnnService' | 'sonaOptimizer' | 'mmrDiversityRanker' | 'guardedVectorBackend';
-/**
- * All controller names
- */
-export type ControllerName = MemoryControllerName | CLIControllerName;
-/**
- * Initialization level for dependency ordering
- */
-export interface InitLevel {
-    level: number;
-    controllers: ControllerName[];
-}
-/**
- * Individual controller health status
- */
-export interface ControllerHealth {
-    name: ControllerName;
-    status: 'healthy' | 'degraded' | 'unavailable';
-    initTimeMs: number;
-    error?: string;
-}
-/**
- * Aggregated health report for all controllers
- */
-export interface RegistryHealthReport {
-    status: 'healthy' | 'degraded' | 'unhealthy';
-    controllers: ControllerHealth[];
-    storageBackendAvailable: boolean;
-    initTimeMs: number;
-    timestamp: number;
-    activeControllers: number;
-    totalControllers: number;
-}
-/**
- * Runtime configuration for controller activation
- */
-export interface RuntimeConfig {
-    /** Database path for the memory backend (SQLite as of 2026-07) */
-    dbPath?: string;
-    /** Vector dimension (default: 384 for MiniLM) */
-    dimension?: number;
-    /** Embedding generator function */
-    embeddingGenerator?: EmbeddingGenerator;
-    /** Memory backend config */
-    memory?: {
-        enableHNSW?: boolean;
-        tieredCache?: Partial<CacheConfig>;
-    };
-    /** Neural config */
-    neural?: {
-        enabled?: boolean;
-        modelPath?: string;
-        sonaMode?: SONAMode;
-    };
-    /** Controllers to explicitly enable/disable */
-    controllers?: Partial<Record<ControllerName, boolean>>;
-    /** Backend instance to use (if pre-created) */
-    backend?: IMemoryBackend;
-}
-/**
- * Level-based initialization order per ADR-053.
- * Controllers at each level can be initialized in parallel.
- * Each level must complete before the next begins.
- */
-export declare const INIT_LEVELS: InitLevel[];
-/**
- * Central registry for memory backend controller lifecycle management.
- *
- * Handles:
- * - Level-based initialization ordering (levels 0-6)
- * - Graceful degradation (each controller fails independently)
- * - Config-driven activation (controllers only instantiate when enabled)
- * - Health check aggregation across all controllers
- * - Ordered shutdown (reverse initialization order)
- *
- * @example
- * ```typescript
- * const registry = new ControllerRegistry();
- * await registry.initialize({
- *   dbPath: './data/memory.db',
- *   dimension: 384,
- *   memory: {
- *     enableHNSW: true,
- *     learningBridge: { sonaMode: 'balanced' },
- * *   },
- * });
- *
- * const reasoning = registry.get<ReasoningBank>('reasoningBank');
- *
- * await registry.shutdown();
- * ```
- */
-export declare class ControllerRegistry extends EventEmitter {
-    private controllers;
-    private backend;
-    private config;
-    private initialized;
-    private initTimeMs;
-    /**
-     * Initialize all controllers in level-based order.
-     *
-     * Each level's controllers are initialized in parallel within the level.
-     * Failures are isolated: a controller that fails to init is marked as
-     * unavailable but does not block other controllers.
-     */
-    initialize(config?: RuntimeConfig): Promise<void>;
-    /**
-     * Shutdown all controllers in reverse initialization order.
-     */
-    shutdown(): Promise<void>;
-    /**
-     * Get a controller instance by name.
-     * Returns null if the controller is not initialized or unavailable.
-     */
-    get<T>(name: ControllerName): T | null;
-    /**
-     * Check if a controller is enabled and initialized.
-     */
-    isEnabled(name: ControllerName): boolean;
-    /**
-     * Aggregate health check across all controllers.
-     */
-    healthCheck(): Promise<RegistryHealthReport>;
-    /**
-     * Get the underlying memory backend instance.
-     */
-    /**
-     * Get the memory backend.
-     */
-    getBackend(): IMemoryBackend | null;
-    /**
-     * Check if the registry is initialized.
-     */
-    isInitialized(): boolean;
-    /**
-     * Get the number of active (successfully initialized) controllers.
-     */
-    getActiveCount(): number;
-    /**
-     * List all registered controller names and their status.
-     */
-    listControllers(): Array<{
-        name: ControllerName;
-        enabled: boolean;
-        level: number;
-    }>;
-    /**
-     * Check whether a controller should be initialized based on config.
-     */
-    private isControllerEnabled;
-    /**
-     * Initialize a single controller with error isolation.
-     */
-    private initController;
-    /**
-     * Factory method to create a controller instance.
-     * Handles CLI-layer controllers; internal controllers are
-     * accessed via backend.getController().
-     */
-    private createController;
-    /**
-     * Shutdown a single controller gracefully.
-     */
-    private shutdownController;
-    /**
-     * Create an EmbeddingService for controllers that need it.
-     * Uses the config's embedding generator or creates a minimal local service.
-     */
-    private createEmbeddingService;
-    /**
-     * Lightweight in-memory tiered store (fallback when HierarchicalMemory
-     * cannot be initialized from legacy module).
-     * Enforces per-tier size limits to prevent unbounded memory growth.
-     */
-    private createTieredMemoryStub;
-    /**
-     * No-op consolidation stub (fallback when MemoryConsolidation
-     * cannot be initialized from legacy module).
-     */
-    private createConsolidationStub;
-}
-export default ControllerRegistry;
-//# sourceMappingURL=controller-registry.d.ts.map

package/dist/controller-registry.d.ts.map

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