@milaboratories/multi-sequence-alignment 1.45.0

package/dist/Toolbar.vue.d.ts

@@ -0,0 +1,16 @@
+import { ListOptionNormalized } from '@milaboratories/uikit';
+import { PlMultiSequenceAlignmentColorSchemeOption as ColorSchemeOption, PlMultiSequenceAlignmentSettings as Settings, PObjectId, PTableColumnId } from '@platforma-sdk/model';
+type __VLS_Props = {
+    settings: Settings;
+    sequenceColumnOptions: ListOptionNormalized<PObjectId>[] | undefined;
+    labelColumnOptions: ListOptionNormalized<PTableColumnId>[] | undefined;
+    colorSchemeOptions: ListOptionNormalized<ColorSchemeOption>[];
+};
+declare const _default: import('vue').DefineComponent<__VLS_Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {
+    updateSettings: (args_0: Partial<Settings>) => any;
+    export: () => any;
+}, string, import('vue').PublicProps, Readonly<__VLS_Props> & Readonly<{
+    onUpdateSettings?: ((args_0: Partial<Settings>) => any) | undefined;
+    onExport?: (() => any) | undefined;
+}>, {}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, any>;
+export default _default;

package/dist/Toolbar.vue.js

@@ -0,0 +1,10 @@
+import o from "./Toolbar.vue2.js";
+import s from "./Toolbar.vue3.js";
+import t from "./_virtual/_plugin-vue_export-helper.js";
+const r = {
+  $style: s
+}, f = /* @__PURE__ */ t(o, [["__cssModules", r]]);
+export {
+  f as default
+};
+//# sourceMappingURL=Toolbar.vue.js.map

package/dist/Toolbar.vue.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Toolbar.vue.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;"}

package/dist/Toolbar.vue2.js

@@ -0,0 +1,228 @@
+import { defineComponent as I, useCssModule as K, ref as S, watchEffect as L, computed as x, createElementBlock as w, openBlock as P, Fragment as M, createElementVNode as r, createVNode as o, normalizeClass as m, unref as t, withModifiers as k, withCtx as s, createTextVNode as a, createCommentVNode as U, createBlock as T, withKeys as C } from "vue";
+import { isJsonEqual as q } from "./node_modules/.pnpm/@milaboratories_helpers@1.12.0/node_modules/@milaboratories/helpers/dist/objects.js";
+import { PlDropdownMulti as $, PlDropdown as D, PlBtnGhost as V, PlCheckbox as g, PlSlideModal as G, PlNumberField as b, PlBtnPrimary as A, PlBtnSecondary as F } from "@milaboratories/uikit";
+import { defaultSettings as R } from "./settings.js";
+const H = /* @__PURE__ */ I({
+  __name: "Toolbar",
+  props: {
+    settings: {},
+    sequenceColumnOptions: {},
+    labelColumnOptions: {},
+    colorSchemeOptions: {}
+  },
+  emits: ["updateSettings", "export"],
+  setup(B, { emit: O }) {
+    const n = B, y = O, u = K(), f = S(!1);
+    function d(p, e) {
+      y("updateSettings", { [p]: e });
+    }
+    function v(p, e) {
+      d(
+        "widgets",
+        e ? [...n.settings.widgets, p] : n.settings.widgets.filter((l) => p !== l)
+      );
+    }
+    const i = S({ ...n.settings.alignmentParams });
+    L(() => {
+      i.value = { ...n.settings.alignmentParams };
+    });
+    const N = x(
+      () => !q(n.settings.alignmentParams, i.value)
+    ), E = x(
+      () => !q(n.settings.alignmentParams, R.alignmentParams)
+    );
+    return (p, e) => (P(), w(M, null, [
+      r("div", {
+        class: m(t(u).container)
+      }, [
+        r("div", {
+          class: m(t(u).line)
+        }, [
+          r("div", {
+            class: m(t(u).section)
+          }, [
+            o(t($), {
+              label: "Sequence Columns",
+              "model-value": n.settings.sequenceColumnIds ?? [],
+              options: n.sequenceColumnOptions,
+              clearable: "",
+              "onUpdate:modelValue": e[0] || (e[0] = (l) => d("sequenceColumnIds", l))
+            }, null, 8, ["model-value", "options"]),
+            o(t($), {
+              "model-value": n.settings.labelColumnIds ?? [],
+              label: "Label Columns",
+              options: n.labelColumnOptions,
+              clearable: "",
+              "onUpdate:modelValue": e[1] || (e[1] = (l) => d("labelColumnIds", l))
+            }, null, 8, ["model-value", "options"]),
+            o(t(D), {
+              "model-value": n.settings.colorScheme,
+              label: "Color Scheme",
+              options: n.colorSchemeOptions,
+              "onUpdate:modelValue": e[2] || (e[2] = (l) => d("colorScheme", l))
+            }, null, 8, ["model-value", "options"])
+          ], 2),
+          r("div", {
+            class: m(t(u).buttons)
+          }, [
+            o(t(V), {
+              icon: "settings",
+              onClick: e[3] || (e[3] = k((l) => f.value = !0, ["stop"]))
+            }, {
+              default: s(() => [...e[19] || (e[19] = [
+                a(" Settings ", -1)
+              ])]),
+              _: 1
+            }),
+            o(t(V), {
+              icon: "export",
+              onClick: e[4] || (e[4] = k((l) => y("export"), ["stop"]))
+            }, {
+              default: s(() => [...e[20] || (e[20] = [
+                a(" Export ", -1)
+              ])]),
+              _: 1
+            })
+          ], 2)
+        ], 2),
+        r("div", {
+          class: m(t(u).line)
+        }, [
+          r("div", {
+            class: m(t(u).section)
+          }, [
+            o(t(g), {
+              "model-value": n.settings.widgets.includes("seqLogo"),
+              "onUpdate:modelValue": e[5] || (e[5] = (l) => v("seqLogo", l))
+            }, {
+              default: s(() => [...e[21] || (e[21] = [
+                a(" Seq logo ", -1)
+              ])]),
+              _: 1
+            }, 8, ["model-value"]),
+            o(t(g), {
+              "model-value": n.settings.widgets.includes("consensus"),
+              "onUpdate:modelValue": e[6] || (e[6] = (l) => v("consensus", l))
+            }, {
+              default: s(() => [...e[22] || (e[22] = [
+                a(" Consensus ", -1)
+              ])]),
+              _: 1
+            }, 8, ["model-value"]),
+            o(t(g), {
+              "model-value": !1,
+              disabled: ""
+            }, {
+              default: s(() => [...e[23] || (e[23] = [
+                a("Navigator", -1)
+              ])]),
+              _: 1
+            }),
+            o(t(g), {
+              "model-value": n.settings.widgets.includes("tree"),
+              "onUpdate:modelValue": e[7] || (e[7] = (l) => v("tree", l))
+            }, {
+              default: s(() => [...e[24] || (e[24] = [
+                a(" Tree ", -1)
+              ])]),
+              _: 1
+            }, 8, ["model-value"]),
+            o(t(g), {
+              "model-value": n.settings.widgets.includes("legend"),
+              disabled: n.settings.colorScheme.type === "no-color",
+              "onUpdate:modelValue": e[8] || (e[8] = (l) => v("legend", l))
+            }, {
+              default: s(() => [...e[25] || (e[25] = [
+                a(" Legend ", -1)
+              ])]),
+              _: 1
+            }, 8, ["model-value", "disabled"])
+          ], 2)
+        ], 2)
+      ], 2),
+      o(t(G), {
+        modelValue: f.value,
+        "onUpdate:modelValue": e[18] || (e[18] = (l) => f.value = l)
+      }, {
+        title: s(() => [...e[26] || (e[26] = [
+          a("Settings", -1)
+        ])]),
+        default: s(() => [
+          o(t(b), {
+            modelValue: i.value.gpo,
+            "onUpdate:modelValue": e[9] || (e[9] = (l) => i.value.gpo = l),
+            label: "Gap open penalty",
+            step: 0.1,
+            onKeyup: e[10] || (e[10] = C((l) => d("alignmentParams", i.value), ["enter"]))
+          }, {
+            tooltip: s(() => [...e[27] || (e[27] = [
+              a(" Penalty score assigned to the introduction of a gap in the alignment ", -1)
+            ])]),
+            _: 1
+          }, 8, ["modelValue"]),
+          o(t(b), {
+            modelValue: i.value.gpe,
+            "onUpdate:modelValue": e[11] || (e[11] = (l) => i.value.gpe = l),
+            label: "Gap extension penalty",
+            step: 0.1,
+            onKeyup: e[12] || (e[12] = C((l) => d("alignmentParams", i.value), ["enter"]))
+          }, {
+            tooltip: s(() => [...e[28] || (e[28] = [
+              a(" Penalty score assigned to each additional residue added to an existing gap ", -1)
+            ])]),
+            _: 1
+          }, 8, ["modelValue"]),
+          o(t(b), {
+            modelValue: i.value.tgpe,
+            "onUpdate:modelValue": e[13] || (e[13] = (l) => i.value.tgpe = l),
+            label: "Terminal gap extension penalty",
+            step: 0.1,
+            onKeyup: e[14] || (e[14] = C((l) => d("alignmentParams", i.value), ["enter"]))
+          }, {
+            tooltip: s(() => [...e[29] || (e[29] = [
+              a(" Penalty score assigned to extending gaps at the ends of sequences ", -1)
+            ])]),
+            _: 1
+          }, 8, ["modelValue"]),
+          N.value ? (P(), w("div", {
+            key: 0,
+            class: m(t(u).pendingChanges)
+          }, [
+            o(t(A), {
+              onClick: e[15] || (e[15] = (l) => d("alignmentParams", i.value))
+            }, {
+              default: s(() => [...e[30] || (e[30] = [
+                a(" Apply ", -1)
+              ])]),
+              _: 1
+            }),
+            o(t(V), {
+              onClick: e[16] || (e[16] = (l) => i.value = n.settings.alignmentParams)
+            }, {
+              default: s(() => [...e[31] || (e[31] = [
+                a(" Cancel ", -1)
+              ])]),
+              _: 1
+            })
+          ], 2)) : U("", !0),
+          E.value ? (P(), T(t(F), {
+            key: 1,
+            class: m(t(u).resetButton),
+            icon: "reverse",
+            onClick: e[17] || (e[17] = (l) => d("alignmentParams", void 0))
+          }, {
+            default: s(() => [...e[32] || (e[32] = [
+              a(" Reset to Default ", -1)
+            ])]),
+            _: 1
+          }, 8, ["class"])) : U("", !0)
+        ]),
+        _: 1
+      }, 8, ["modelValue"])
+    ], 64));
+  }
+});
+export {
+  H as default
+};
+//# sourceMappingURL=Toolbar.vue2.js.map

package/dist/Toolbar.vue2.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Toolbar.vue2.js","sources":["../src/Toolbar.vue"],"sourcesContent":["<script setup lang=\"ts\">\nimport { isJsonEqual } from '@milaboratories/helpers';\nimport {\n  type ListOptionNormalized,\n  PlBtnGhost,\n  PlBtnPrimary,\n  PlBtnSecondary,\n  PlCheckbox,\n  PlDropdown,\n  PlDropdownMulti,\n  PlNumberField,\n  PlSlideModal,\n} from '@milaboratories/uikit';\nimport type {\n  PlMultiSequenceAlignmentColorSchemeOption as ColorSchemeOption,\n  PlMultiSequenceAlignmentSettings as Settings,\n  PlMultiSequenceAlignmentWidget,\n  PObjectId,\n  PTableColumnId,\n} from '@platforma-sdk/model';\nimport { computed, ref, useCssModule, watchEffect } from 'vue';\nimport { defaultSettings } from './settings';\n\nconst props = defineProps<{\n  settings: Settings;\n  sequenceColumnOptions: ListOptionNormalized<PObjectId>[] | undefined;\n  labelColumnOptions: ListOptionNormalized<PTableColumnId>[] | undefined;\n  colorSchemeOptions: ListOptionNormalized<ColorSchemeOption>[];\n}>();\n\nconst emit = defineEmits<{\n  updateSettings: [Partial<Settings>];\n  export: [];\n}>();\n\nconst classes = useCssModule();\n\nconst settingsOpen = ref(false);\n\nfunction updateSetting<K extends keyof Settings>(\n  key: K,\n  value: Settings[K] | undefined,\n) {\n  emit('updateSettings', { [key]: value });\n}\n\nfunction toggleWidget(\n  widget: PlMultiSequenceAlignmentWidget,\n  checked: boolean,\n) {\n  updateSetting(\n    'widgets',\n    checked\n      ? [...props.settings.widgets, widget]\n      : props.settings.widgets.filter((w) => widget !== w),\n  );\n}\n\nconst alignmentParams = ref({ ...props.settings.alignmentParams });\nwatchEffect(() => {\n  alignmentParams.value = { ...props.settings.alignmentParams };\n});\n\nconst alignmentParamsChangesPending = computed(() =>\n  !isJsonEqual(props.settings.alignmentParams, alignmentParams.value),\n);\n\nconst canResetAlignmentParams = computed(() =>\n  !isJsonEqual(props.settings.alignmentParams, defaultSettings.alignmentParams),\n);\n</script>\n\n<template>\n  <div :class=\"classes.container\">\n    <div :class=\"classes.line\">\n      <div :class=\"classes.section\">\n        <PlDropdownMulti\n          label=\"Sequence Columns\"\n          :model-value=\"props.settings.sequenceColumnIds ?? []\"\n          :options=\"props.sequenceColumnOptions\"\n          clearable\n          @update:model-value=\"event => updateSetting('sequenceColumnIds', event)\"\n        />\n        <PlDropdownMulti\n          :model-value=\"props.settings.labelColumnIds ?? []\"\n          label=\"Label Columns\"\n          :options=\"props.labelColumnOptions\"\n          clearable\n          @update:model-value=\"event => updateSetting('labelColumnIds', event)\"\n        />\n        <PlDropdown\n          :model-value=\"props.settings.colorScheme\"\n          label=\"Color Scheme\"\n          :options=\"props.colorSchemeOptions\"\n          @update:model-value=\"event => updateSetting('colorScheme', event)\"\n        />\n      </div>\n      <div :class=\"classes.buttons\">\n        <PlBtnGhost icon=\"settings\" @click.stop=\"settingsOpen = true\">\n          Settings\n        </PlBtnGhost>\n        <PlBtnGhost icon=\"export\" @click.stop=\"emit('export')\">\n          Export\n        </PlBtnGhost>\n      </div>\n    </div>\n    <div :class=\"classes.line\">\n      <div :class=\"classes.section\">\n        <PlCheckbox\n          :model-value=\"props.settings.widgets.includes('seqLogo')\"\n          @update:model-value=\"event => toggleWidget('seqLogo', event)\"\n        >\n          Seq logo\n        </PlCheckbox>\n        <PlCheckbox\n          :model-value=\"props.settings.widgets.includes('consensus')\"\n          @update:model-value=\"event => toggleWidget('consensus', event)\"\n        >\n          Consensus\n        </PlCheckbox>\n        <PlCheckbox :model-value=\"false\" disabled>Navigator</PlCheckbox>\n        <PlCheckbox\n          :model-value=\"props.settings.widgets.includes('tree')\"\n          @update:model-value=\"event => toggleWidget('tree', event)\"\n        >\n          Tree\n        </PlCheckbox>\n        <PlCheckbox\n          :model-value=\"props.settings.widgets.includes('legend')\"\n          :disabled=\"props.settings.colorScheme.type === 'no-color'\"\n          @update:model-value=\"event => toggleWidget('legend', event)\"\n        >\n          Legend\n        </PlCheckbox>\n      </div>\n    </div>\n  </div>\n  <PlSlideModal v-model=\"settingsOpen\">\n    <template #title>Settings</template>\n    <PlNumberField\n      v-model=\"alignmentParams.gpo\"\n      label=\"Gap open penalty\"\n      :step=\"0.1\"\n      @keyup.enter=\"updateSetting('alignmentParams', alignmentParams)\"\n    >\n      <template #tooltip>\n        Penalty score assigned to the introduction of a gap in the alignment\n      </template>\n    </PlNumberField>\n    <PlNumberField\n      v-model=\"alignmentParams.gpe\"\n      label=\"Gap extension penalty\"\n      :step=\"0.1\"\n      @keyup.enter=\"updateSetting('alignmentParams', alignmentParams)\"\n    >\n      <template #tooltip>\n        Penalty score assigned to each additional residue added to an existing\n        gap\n      </template>\n    </PlNumberField>\n    <PlNumberField\n      v-model=\"alignmentParams.tgpe\"\n      label=\"Terminal gap extension penalty\"\n      :step=\"0.1\"\n      @keyup.enter=\"updateSetting('alignmentParams', alignmentParams)\"\n    >\n      <template #tooltip>\n        Penalty score assigned to extending gaps at the ends of sequences\n      </template>\n    </PlNumberField>\n    <div\n      v-if=\"alignmentParamsChangesPending\"\n      :class=\"classes.pendingChanges\"\n    >\n      <PlBtnPrimary @click=\"updateSetting('alignmentParams', alignmentParams)\">\n        Apply\n      </PlBtnPrimary>\n      <PlBtnGhost @click=\"alignmentParams = props.settings.alignmentParams\">\n        Cancel\n      </PlBtnGhost>\n    </div>\n    <PlBtnSecondary\n      v-if=\"canResetAlignmentParams\"\n      :class=\"classes.resetButton\"\n      icon=\"reverse\"\n      @click=\"updateSetting('alignmentParams', undefined)\"\n    >\n      Reset to Default\n    </PlBtnSecondary>\n  </PlSlideModal>\n</template>\n\n<style module>\n.container {\n  display: flex;\n  flex-direction: column;\n  gap: 24px;\n}\n\n.line {\n  display: flex;\n  justify-content: space-between;\n}\n\n.section {\n  display: flex;\n  flex-wrap: wrap;\n  gap: 24px;\n}\n\n.buttons {\n  display: flex;\n}\n\n.pendingChanges {\n  display: flex;\n  button {\n    min-width: 160px;\n  }\n}\n\n.resetButton {\n  margin-block-start: auto;\n  span {\n    text-transform: none;\n  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package/dist/Toolbar.vue3.js

@@ -0,0 +1,19 @@
+(function(){"use strict";try{if(typeof document<"u"){var e=document.createElement("style");e.appendChild(document.createTextNode("._container_ypn45_2{display:flex;flex-direction:column;gap:24px}._line_ypn45_8{display:flex;justify-content:space-between}._section_ypn45_13{display:flex;flex-wrap:wrap;gap:24px}._buttons_ypn45_19,._pendingChanges_ypn45_23{display:flex}._pendingChanges_ypn45_23 button{min-width:160px}._resetButton_ypn45_30{margin-block-start:auto}._resetButton_ypn45_30 span{text-transform:none}")),document.head.appendChild(e)}}catch(n){console.error("vite-plugin-css-injected-by-js",n)}})();
+const n = "_container_ypn45_2", t = "_line_ypn45_8", e = "_section_ypn45_13", s = "_buttons_ypn45_19", o = "_pendingChanges_ypn45_23", _ = "_resetButton_ypn45_30", c = {
+  container: n,
+  line: t,
+  section: e,
+  buttons: s,
+  pendingChanges: o,
+  resetButton: _
+};
+export {
+  s as buttons,
+  n as container,
+  c as default,
+  t as line,
+  o as pendingChanges,
+  _ as resetButton,
+  e as section
+};
+//# sourceMappingURL=Toolbar.vue3.js.map

package/dist/Toolbar.vue3.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Toolbar.vue3.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;"}

package/dist/_virtual/_plugin-vue_export-helper.js

@@ -0,0 +1,10 @@
+const s = (t, e) => {
+  const o = t.__vccOpts || t;
+  for (const [r, c] of e)
+    o[r] = c;
+  return o;
+};
+export {
+  s as default
+};
+//# sourceMappingURL=_plugin-vue_export-helper.js.map

package/dist/_virtual/_plugin-vue_export-helper.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"_plugin-vue_export-helper.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;"}