@milaboratories/multi-sequence-alignment 1.45.0

package/.turbo/turbo-build.log

@@ -0,0 +1,52 @@
+ WARN  Issue while reading "/home/runner/work/visualizations/visualizations/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
+
+> @milaboratories/multi-sequence-alignment@1.45.0 build /home/runner/work/visualizations/visualizations/packages/multi-sequence-alignment
+> ts-builder build --target browser-lib
+
+Building browser-lib project...
+↳ vite.js build --config /home/runner/work/visualizations/visualizations/node_modules/.pnpm/@milaboratories+ts-builder@1.0.4_@microsoft+api-extractor@7.53.2_@types+node@24.10.0__@types+_7v5fqgpngdjq5mb7hb7rn2befm/node_modules/@milaboratories/ts-builder/dist/configs/vite.browser-lib.config.js --mode production
+vite v6.4.1 building for production...
+transforming...
+✓ 45 modules transformed.
+rendering chunks...
+
+[vite:dts] Start generate declaration files...
+computing gzip size...
+dist/assets/multi-sequence-alignment.worker-Cm0gZp19.js                                                      222.50 kB
+dist/assets/phylogenetic-tree.worker-4CrExYEo.js                                                             465.75 kB
+dist/cell-size.js                                                                                              0.11 kB │ gzip: 0.12 kB │ map:  0.24 kB
+dist/index.js                                                                                                  0.18 kB │ gzip: 0.16 kB │ map:  0.26 kB
+dist/_virtual/_plugin-vue_export-helper.js                                                                     0.19 kB │ gzip: 0.17 kB │ map:  0.12 kB
+dist/settings.js                                                                                               0.23 kB │ gzip: 0.20 kB │ map:  0.58 kB
+dist/Legend.vue.js                                                                                             0.27 kB │ gzip: 0.21 kB │ map:  0.10 kB
+dist/residue-counts.js                                                                                         0.27 kB │ gzip: 0.20 kB │ map:  4.40 kB
+dist/Toolbar.vue.js                                                                                            0.27 kB │ gzip: 0.21 kB │ map:  0.10 kB
+dist/SeqLogo.vue.js                                                                                            0.27 kB │ gzip: 0.21 kB │ map:  0.10 kB
+dist/Consensus.vue.js                                                                                          0.28 kB │ gzip: 0.21 kB │ map:  0.10 kB
+dist/PhylogeneticTree.vue.js                                                                                   0.30 kB │ gzip: 0.22 kB │ map:  0.11 kB
+dist/PlMultiSequenceAlignment.vue.js                                                                           0.32 kB │ gzip: 0.22 kB │ map:  0.12 kB
+dist/MultiSequenceAlignmentView.vue.js                                                                         0.33 kB │ gzip: 0.22 kB │ map:  0.12 kB
+dist/SeqLogo.vue3.js                                                                                           0.41 kB │ gzip: 0.29 kB │ map:  0.10 kB
+dist/PhylogeneticTree.vue3.js                                                                                  0.42 kB │ gzip: 0.30 kB │ map:  0.11 kB
+dist/PlMultiSequenceAlignment.vue3.js                                                                          0.46 kB │ gzip: 0.33 kB │ map:  0.12 kB
+dist/useMiPlots.js                                                                                             0.47 kB │ gzip: 0.30 kB │ map:  1.09 kB
+dist/Consensus.vue3.js                                                                                         0.47 kB │ gzip: 0.32 kB │ map:  0.10 kB
+dist/migrations.js                                                                                             0.62 kB │ gzip: 0.37 kB │ map:  2.15 kB
+dist/Legend.vue3.js                                                                                            0.70 kB │ gzip: 0.42 kB │ map:  0.10 kB
+dist/Legend.vue2.js                                                                                            0.85 kB │ gzip: 0.49 kB │ map:  1.53 kB
+dist/node_modules/.pnpm/@milaboratories_helpers@1.12.0/node_modules/@milaboratories/helpers/dist/objects.js    0.89 kB │ gzip: 0.44 kB │ map:  9.12 kB
+dist/Toolbar.vue3.js                                                                                           1.05 kB │ gzip: 0.53 kB │ map:  0.10 kB
+dist/markup.js                                                                                                 2.02 kB │ gzip: 1.03 kB │ map:  6.53 kB
+dist/PhylogeneticTree.vue2.js                                                                                  2.31 kB │ gzip: 1.06 kB │ map:  4.45 kB
+dist/SeqLogo.vue2.js                                                                                           3.21 kB │ gzip: 1.32 kB │ map:  6.46 kB
+dist/MultiSequenceAlignmentView.vue3.js                                                                        3.52 kB │ gzip: 1.28 kB │ map:  0.13 kB
+dist/Consensus.vue2.js                                                                                         3.60 kB │ gzip: 1.43 kB │ map:  7.13 kB
+dist/MultiSequenceAlignmentView.vue2.js                                                                        4.70 kB │ gzip: 1.66 kB │ map: 11.73 kB
+dist/chemical-properties.js                                                                                    4.76 kB │ gzip: 1.67 kB │ map: 11.74 kB
+dist/PlMultiSequenceAlignment.vue2.js                                                                          7.76 kB │ gzip: 2.69 kB │ map: 14.84 kB
+dist/Toolbar.vue2.js                                                                                           8.32 kB │ gzip: 1.97 kB │ map: 12.54 kB
+dist/data.js                                                                                                  11.32 kB │ gzip: 3.65 kB │ map: 33.73 kB
+[vite:dts] Declaration files built in 5065ms.
+
+✓ built in 7.01s
+Build completed successfully

package/.turbo/turbo-lint.log

@@ -0,0 +1,12 @@
+ WARN  Issue while reading "/home/runner/work/visualizations/visualizations/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
+
+> @milaboratories/multi-sequence-alignment@1.45.0 lint /home/runner/work/visualizations/visualizations/packages/multi-sequence-alignment
+> eslint .
+
+
+/home/runner/work/visualizations/visualizations/packages/multi-sequence-alignment/src/index.ts
+  1:36  warning  Missing semicolon  semi
+
+✖ 1 problem (0 errors, 1 warning)
+  0 errors and 1 warning potentially fixable with the `--fix` option.
+

package/.turbo/turbo-test.log

@@ -0,0 +1,13 @@
+ WARN  Issue while reading "/home/runner/work/visualizations/visualizations/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
+
+> @milaboratories/multi-sequence-alignment@1.45.0 test /home/runner/work/visualizations/visualizations/packages/multi-sequence-alignment
+> vitest run --passWithNoTests
+
+
+ RUN  v4.0.8 /home/runner/work/visualizations/visualizations/packages/multi-sequence-alignment
+
+No test files found, exiting with code 0
+
+include: **/*.{test,spec}.?(c|m)[jt]s?(x)
+exclude:  **/node_modules/**, **/.git/**
+

package/.turbo/turbo-type-check.log

@@ -0,0 +1,6 @@
+ WARN  Issue while reading "/home/runner/work/visualizations/visualizations/.npmrc". Failed to replace env in config: ${NPMJS_TOKEN}
+
+> @milaboratories/multi-sequence-alignment@1.45.0 type-check /home/runner/work/visualizations/visualizations/packages/multi-sequence-alignment
+> ts-builder types --target browser-lib
+
+↳ vue-tsc.js --noEmit --project ./tsconfig.json

package/dist/Consensus.vue.d.ts

@@ -0,0 +1,9 @@
+import { ResidueCounts } from './types';
+type __VLS_Props = {
+    residueCounts: ResidueCounts;
+    labelsClass: string;
+};
+declare const _default: import('vue').DefineComponent<__VLS_Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<__VLS_Props> & Readonly<{}>, {}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {
+    plotEl: HTMLDivElement;
+}, any>;
+export default _default;

package/dist/Consensus.vue.js

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+import s from "./Consensus.vue2.js";
+import o from "./Consensus.vue3.js";
+import t from "./_virtual/_plugin-vue_export-helper.js";
+const e = {
+  $style: o
+}, f = /* @__PURE__ */ t(s, [["__cssModules", e]]);
+export {
+  f as default
+};
+//# sourceMappingURL=Consensus.vue.js.map

package/dist/Consensus.vue.js.map

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package/dist/Consensus.vue2.js

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+import { defineComponent as x, useCssModule as k, useTemplateRef as E, computed as c, shallowRef as _, watchEffect as A, onBeforeUnmount as O, createBlock as S, createElementBlock as j, unref as u, openBlock as y, withCtx as B, createTextVNode as D, toDisplayString as C, normalizeClass as v, createElementVNode as b } from "vue";
+import { PlAlert as G } from "@milaboratories/uikit";
+import { cellSize as K } from "./cell-size.js";
+import { useMiPlots as T } from "./useMiPlots.js";
+const U = /* @__PURE__ */ x({
+  __name: "Consensus",
+  props: {
+    residueCounts: {},
+    labelsClass: {}
+  },
+  setup(g) {
+    const s = g, w = k(), a = E("plotEl"), f = c(
+      () => s.residueCounts.map((e) => {
+        let o = 0, t = { label: "", count: 0 };
+        for (const [r, n] of Object.entries(e))
+          o += n, r !== "-" && n > t.count && (t = { label: r, count: n });
+        const i = CSS.percent(t.count / o * 100);
+        return {
+          label: t.label,
+          color: `color-mix(in oklab, ${i} #3056AE, #C1CDE9)`
+        };
+      })
+    ), m = c(() => {
+      const e = s.residueCounts.length * K.inline;
+      return {
+        type: "discrete",
+        y: {
+          type: "column",
+          value: "countKey"
+        },
+        legend: { show: !1 },
+        primaryGrouping: {
+          columnName: {
+            type: "column",
+            value: "columnKey"
+          },
+          order: s.residueCounts.map((o, t) => t),
+          inheritedAes: Object.fromEntries(
+            f.value.map(({ color: o }) => ({ fillColor: o })).entries()
+          )
+        },
+        layers: [{
+          type: "bar",
+          height: "max",
+          aes: {
+            ...s.residueCounts.length && {
+              width: (e - s.residueCounts.length + 1) / s.residueCounts.length
+            },
+            fillColor: {
+              type: "primaryGrouping"
+            },
+            lineColor: "#ffffff"
+          }
+        }],
+        title: {
+          name: "",
+          show: !1
+        },
+        size: {
+          width: e,
+          height: 60,
+          outerOffset: 0,
+          innerOffset: 0
+        },
+        xAxis: {
+          title: "",
+          showGrid: !1,
+          showTicks: !1,
+          hiddenLabels: !0
+        },
+        yAxis: {
+          title: "",
+          showGrid: !1,
+          showTicks: !1,
+          hiddenLabels: !0
+        },
+        frame: {
+          type: "empty"
+        }
+      };
+    }), p = c(() => {
+      const e = [], o = [];
+      for (const [t, i] of s.residueCounts.entries())
+        for (const [r, n] of Object.entries(i))
+          r !== "-" && (e.push(n), o.push(t));
+      return {
+        type: "columns",
+        id: `consensus-${crypto.randomUUID()}`,
+        values: { countKey: e, columnKey: o }
+      };
+    }), l = _(), { miplots: d, error: h } = T();
+    return A(async () => {
+      !a.value || !d.value || (l.value ? l.value.updateSettingsAndData(p.value, m.value) : (l.value = d.value.newPlot(p.value, m.value), l.value.mount(a.value)));
+    }), O(() => {
+      var e;
+      (e = l.value) == null || e.unmount();
+    }), (e, o) => u(h) ? (y(), S(u(G), {
+      key: 0,
+      type: "error"
+    }, {
+      default: B(() => [
+        D(C(u(h).message), 1)
+      ]),
+      _: 1
+    })) : (y(), j("div", {
+      key: 1,
+      class: v(u(w).container)
+    }, [
+      b("div", {
+        class: v(s.labelsClass)
+      }, C(f.value.map((t) => t.label).join("")), 3),
+      b("div", {
+        ref_key: "plotEl",
+        ref: a
+      }, null, 512)
+    ], 2));
+  }
+});
+export {
+  U as default
+};
+//# sourceMappingURL=Consensus.vue2.js.map

package/dist/Consensus.vue2.js.map

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package/dist/Consensus.vue3.js

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+const n = "_container_1vnon_2", t = {
+  container: n
+};
+export {
+  n as container,
+  t as default
+};
+//# sourceMappingURL=Consensus.vue3.js.map

package/dist/Consensus.vue3.js.map

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package/dist/Legend.vue.d.ts

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+import { HighlightLegend } from './types';
+type __VLS_Props = {
+    legend: HighlightLegend;
+};
+declare const _default: import('vue').DefineComponent<__VLS_Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<__VLS_Props> & Readonly<{}>, {}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {}, HTMLDivElement>;
+export default _default;

package/dist/Legend.vue.js

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+import s from "./Legend.vue2.js";
+import o from "./Legend.vue3.js";
+import t from "./_virtual/_plugin-vue_export-helper.js";
+const e = {
+  $style: o
+}, f = /* @__PURE__ */ t(s, [["__cssModules", e]]);
+export {
+  f as default
+};
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package/dist/Legend.vue.js.map

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package/dist/Legend.vue2.js

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+import { defineComponent as i, useCssModule as m, createElementBlock as n, openBlock as t, normalizeClass as r, unref as l, Fragment as u, renderList as p, createElementVNode as g, createTextVNode as _, normalizeStyle as f, toDisplayString as C } from "vue";
+const y = /* @__PURE__ */ i({
+  __name: "Legend",
+  props: {
+    legend: {}
+  },
+  setup(o) {
+    const s = o, e = m();
+    return (k, v) => (t(), n("div", {
+      class: r(l(e).container)
+    }, [
+      (t(!0), n(u, null, p(s.legend, ({ label: a, color: c }, d) => (t(), n("div", {
+        key: d,
+        class: r(l(e).item)
+      }, [
+        g("div", {
+          class: r(l(e).colorSample),
+          style: f({ backgroundColor: c })
+        }, null, 6),
+        _(" " + C(a), 1)
+      ], 2))), 128))
+    ], 2));
+  }
+});
+export {
+  y as default
+};
+//# sourceMappingURL=Legend.vue2.js.map

package/dist/Legend.vue2.js.map

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+{"version":3,"file":"Legend.vue2.js","sources":["../src/Legend.vue"],"sourcesContent":["<script setup lang=\"ts\">\nimport { useCssModule } from 'vue';\nimport type { HighlightLegend } from './types';\n\nconst props = defineProps<{\n  legend: HighlightLegend;\n}>();\n\nconst classes = useCssModule();\n</script>\n\n<template>\n  <div :class=\"classes.container\">\n    <div\n      v-for=\"({ label, color }, key) of props.legend\"\n      :key=\"key\"\n      :class=\"classes.item\"\n    >\n      <div :class=\"classes.colorSample\" :style=\"{ backgroundColor: color }\" />\n      {{ label }}\n    </div>\n  </div>\n</template>\n\n<style module>\n.container {\n  display: flex;\n  flex-wrap: wrap;\n  gap: 12px;\n  max-inline-size: fit-content;\n}\n\n.item {\n  display: flex;\n  gap: 4px;\n}\n\n.colorSample {\n  display: inline-block;\n  block-size: 18px;\n  inline-size: 18px;\n  border-radius: 3px;\n}\n</style>\n"],"names":["props","__props","classes","useCssModule","_createElementBlock","_normalizeClass","_unref","_Fragment","_renderList","label","color","key","_createElementVNode","_createTextVNode"],"mappings":";;;;;;;AAIA,UAAMA,IAAQC,GAIRC,IAAUC,EAAA;2BAIdC,EASM,OAAA;AAAA,MATA,OAAKC,EAAEC,EAAAJ,CAAA,EAAQ,SAAS;AAAA,IAAA;cAC5BE,EAOMG,GAAA,MAAAC,EAN8BR,EAAM,WAA9B,OAAAS,GAAO,OAAAC,EAAA,GAASC,YAD5BP,EAOM,OAAA;AAAA,QALH,KAAAO;AAAA,QACA,OAAKN,EAAEC,EAAAJ,CAAA,EAAQ,IAAI;AAAA,MAAA;QAEpBU,EAAwE,OAAA;AAAA,UAAlE,OAAKP,EAAEC,EAAAJ,CAAA,EAAQ,WAAW;AAAA,UAAG,4BAA0BQ,GAAK;AAAA,QAAA;QAAMG,EAAA,QACrEJ,CAAK,GAAA,CAAA;AAAA,MAAA;;;;"}

package/dist/Legend.vue3.js

@@ -0,0 +1,13 @@
+(function(){"use strict";try{if(typeof document<"u"){var e=document.createElement("style");e.appendChild(document.createTextNode("._container_5klj5_2{display:flex;flex-wrap:wrap;gap:12px;max-inline-size:fit-content}._item_5klj5_9{display:flex;gap:4px}._colorSample_5klj5_14{display:inline-block;block-size:18px;inline-size:18px;border-radius:3px}")),document.head.appendChild(e)}}catch(i){console.error("vite-plugin-css-injected-by-js",i)}})();
+const o = "_container_5klj5_2", t = "_item_5klj5_9", e = "_colorSample_5klj5_14", l = {
+  container: o,
+  item: t,
+  colorSample: e
+};
+export {
+  e as colorSample,
+  o as container,
+  l as default,
+  t as item
+};
+//# sourceMappingURL=Legend.vue3.js.map

package/dist/Legend.vue3.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Legend.vue3.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;"}

package/dist/MultiSequenceAlignmentView.vue.d.ts

@@ -0,0 +1,25 @@
+import { PlMultiSequenceAlignmentWidget } from '@platforma-sdk/model';
+import { TreeNodeData } from './phylogenetic-tree.worker';
+import { HighlightLegend, ResidueCounts } from './types';
+type __VLS_Props = {
+    sequences: {
+        name: string;
+        rows: string[];
+        residueCounts: ResidueCounts;
+        highlightImageUrl?: string;
+    }[];
+    labels: {
+        rows: string[];
+    }[];
+    highlightLegend: HighlightLegend | undefined;
+    phylogeneticTree: TreeNodeData[] | undefined;
+    widgets: PlMultiSequenceAlignmentWidget[];
+};
+declare const _default: import('vue').DefineComponent<__VLS_Props, {
+    rootEl: Readonly<import('vue').ShallowRef<HTMLDivElement | null>>;
+}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<__VLS_Props> & Readonly<{}>, {}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {
+    rootRef: HTMLDivElement;
+    referenceCell: HTMLDivElement;
+    corner: HTMLDivElement;
+}, HTMLDivElement>;
+export default _default;

package/dist/MultiSequenceAlignmentView.vue.js

@@ -0,0 +1,10 @@
+import s from "./MultiSequenceAlignmentView.vue2.js";
+import e from "./MultiSequenceAlignmentView.vue3.js";
+import o from "./_virtual/_plugin-vue_export-helper.js";
+const t = {
+  $style: e
+}, i = /* @__PURE__ */ o(s, [["__cssModules", t]]);
+export {
+  i as default
+};
+//# sourceMappingURL=MultiSequenceAlignmentView.vue.js.map

package/dist/MultiSequenceAlignmentView.vue.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiSequenceAlignmentView.vue.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;"}

package/dist/MultiSequenceAlignmentView.vue2.js

@@ -0,0 +1,138 @@
+import { defineComponent as M, useCssVars as U, unref as n, computed as C, useCssModule as D, useTemplateRef as b, ref as I, onBeforeMount as E, onBeforeUnmount as A, watch as F, onWatcherCleanup as H, createElementBlock as i, openBlock as t, normalizeClass as l, createElementVNode as c, createBlock as f, createCommentVNode as u, Fragment as d, renderList as v, toDisplayString as y, withDirectives as O, vShow as P, normalizeStyle as W } from "vue";
+import { cellSize as k } from "./cell-size.js";
+import $ from "./Consensus.vue.js";
+import j from "./Legend.vue.js";
+import G from "./PhylogeneticTree.vue.js";
+import J from "./SeqLogo.vue.js";
+const ne = /* @__PURE__ */ M({
+  __name: "MultiSequenceAlignmentView",
+  props: {
+    sequences: {},
+    labels: {},
+    highlightLegend: {},
+    phylogeneticTree: {},
+    widgets: {}
+  },
+  setup(R, { expose: B }) {
+    U((o) => ({
+      v16792884: n(N),
+      v5f937812: s.sequences.length,
+      v832f3168: _.value,
+      v71429b60: s.labels.length,
+      v49944722: V.value,
+      v622f88b4: x.value,
+      c9eaa2b8: n(T)
+    }));
+    const s = R, r = D(), L = b("rootRef");
+    B({ rootEl: L });
+    const _ = C(() => {
+      var o;
+      return ((o = s.sequences.at(0)) == null ? void 0 : o.rows.length) ?? 0;
+    }), T = CSS.px(k.inline).toString(), N = CSS.px(k.block).toString(), w = b("referenceCell"), h = I(), q = b("corner"), z = I(), x = C(
+      () => h.value ? CSS.px(k.inline - h.value).toString() : void 0
+    ), V = C(
+      () => CSS.px(z.value ?? 0).toString()
+    );
+    let g;
+    E(() => {
+      const o = (a) => {
+        var e;
+        return (e = a.borderBoxSize.find(Boolean)) == null ? void 0 : e.inlineSize;
+      };
+      g = new ResizeObserver((a) => {
+        for (const e of a)
+          switch (e.target) {
+            case w.value:
+              h.value = o(e);
+              break;
+            case q.value:
+              z.value = o(e);
+              break;
+          }
+      });
+    }), A(() => {
+      g.disconnect();
+    });
+    for (const o of [w, q])
+      F(o, (a, e) => {
+        a && g.observe(a), H(() => {
+          e && g.unobserve(e);
+        });
+      });
+    return (o, a) => (t(), i("div", {
+      ref: "rootRef",
+      class: l(n(r).root)
+    }, [
+      c("div", {
+        ref: "referenceCell",
+        class: l(n(r).referenceCell)
+      }, "x", 2),
+      c("div", {
+        class: l(["pl-scrollable", n(r).table])
+      }, [
+        c("div", {
+          class: l(n(r).sidebar)
+        }, [
+          s.widgets.includes("tree") && s.phylogeneticTree ? (t(), f(G, {
+            key: 0,
+            tree: s.phylogeneticTree,
+            class: l(n(r).phylogeneticTree)
+          }, null, 8, ["tree", "class"])) : u("", !0),
+          c("div", {
+            class: l(n(r).labels)
+          }, [
+            (t(!0), i(d, null, v(s.labels, ({ rows: e }, m) => (t(), i(d, { key: m }, [
+              (t(!0), i(d, null, v(e, (p, S) => (t(), i("div", { key: S }, y(p), 1))), 128))
+            ], 64))), 128))
+          ], 2)
+        ], 2),
+        x.value !== void 0 ? (t(!0), i(d, { key: 0 }, v(s.sequences, (e, m) => (t(), i("div", {
+          key: m,
+          class: l(n(r).sequenceColumn)
+        }, [
+          c("div", {
+            class: l(n(r).sequenceHeader)
+          }, [
+            O(c("div", {
+              class: l(n(r).sequenceName)
+            }, y(e.name), 3), [
+              [P, s.sequences.length > 1]
+            ]),
+            s.widgets.includes("consensus") ? (t(), f($, {
+              key: 0,
+              "residue-counts": e.residueCounts,
+              "labels-class": n(r).sequenceRow
+            }, null, 8, ["residue-counts", "labels-class"])) : u("", !0),
+            s.widgets.includes("seqLogo") ? (t(), f(J, {
+              key: 1,
+              "residue-counts": e.residueCounts
+            }, null, 8, ["residue-counts"])) : u("", !0)
+          ], 2),
+          c("div", {
+            class: l(n(r).sequenceRowsContainer),
+            style: W({
+              backgroundImage: e.highlightImageUrl ? `url(${e.highlightImageUrl})` : void 0
+            })
+          }, [
+            (t(!0), i(d, null, v(e.rows, (p, S) => (t(), i("div", {
+              key: S,
+              class: l(n(r).sequenceRow)
+            }, y(p), 3))), 128))
+          ], 6)
+        ], 2))), 128)) : u("", !0),
+        c("div", {
+          ref: "corner",
+          class: l(n(r).corner)
+        }, null, 2)
+      ], 2),
+      s.widgets.includes("legend") && s.highlightLegend ? (t(), f(j, {
+        key: 0,
+        legend: s.highlightLegend
+      }, null, 8, ["legend"])) : u("", !0)
+    ], 2));
+  }
+});
+export {
+  ne as default
+};
+//# sourceMappingURL=MultiSequenceAlignmentView.vue2.js.map

package/dist/MultiSequenceAlignmentView.vue2.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiSequenceAlignmentView.vue2.js","sources":["../src/MultiSequenceAlignmentView.vue"],"sourcesContent":["<script lang=\"ts\" setup>\nimport type { PlMultiSequenceAlignmentWidget } from '@platforma-sdk/model';\nimport {\n  computed,\n  onBeforeMount,\n  onBeforeUnmount,\n  onWatcherCleanup,\n  ref,\n  useCssModule,\n  useTemplateRef,\n  watch,\n} from 'vue';\nimport { cellSize } from './cell-size';\nimport Consensus from './Consensus.vue';\nimport Legend from './Legend.vue';\nimport type { TreeNodeData } from './phylogenetic-tree.worker';\nimport PhylogeneticTree from './PhylogeneticTree.vue';\nimport SeqLogo from './SeqLogo.vue';\nimport type { HighlightLegend, ResidueCounts } from './types';\n\nconst props = defineProps<{\n  sequences: {\n    name: string;\n    rows: string[];\n    residueCounts: ResidueCounts;\n    highlightImageUrl?: string;\n  }[];\n  labels: {\n    rows: string[];\n  }[];\n  highlightLegend: HighlightLegend | undefined;\n  phylogeneticTree: TreeNodeData[] | undefined;\n  widgets: PlMultiSequenceAlignmentWidget[];\n}>();\n\nconst classes = useCssModule();\n\nconst rootEl = useTemplateRef('rootRef');\ndefineExpose({ rootEl });\n\nconst rowCount = computed(() => props.sequences.at(0)?.rows.length ?? 0);\n\nconst targetCellInlineSize = CSS.px(cellSize.inline).toString();\nconst targetCellBlockSize = CSS.px(cellSize.block).toString();\n\nconst referenceCellRef = useTemplateRef('referenceCell');\nconst referenceCellInlineSize = ref<number>();\n\nconst cornerRef = useTemplateRef('corner');\nconst cornerInlineSize = ref<number>();\n\nconst letterSpacing = computed(() =>\n  referenceCellInlineSize.value\n    ? CSS.px(cellSize.inline - referenceCellInlineSize.value).toString()\n    : undefined,\n);\n\nconst sequenceNameInsetInlineStart = computed(() =>\n  CSS.px(cornerInlineSize.value ?? 0).toString(),\n);\n\nlet observer: ResizeObserver;\n\nonBeforeMount(() => {\n  const getInlineSize = (entry: ResizeObserverEntry) =>\n    entry.borderBoxSize.find(Boolean)?.inlineSize;\n\n  observer = new ResizeObserver((entries) => {\n    for (const entry of entries) {\n      switch (entry.target) {\n        case referenceCellRef.value:\n          referenceCellInlineSize.value = getInlineSize(entry);\n          break;\n        case cornerRef.value:\n          cornerInlineSize.value = getInlineSize(entry);\n          break;\n      }\n    }\n  });\n});\n\nonBeforeUnmount(() => {\n  observer.disconnect();\n});\n\nfor (const ref of [referenceCellRef, cornerRef]) {\n  watch(ref, (el, prevEl) => {\n    if (el) observer.observe(el);\n    onWatcherCleanup(() => {\n      if (prevEl) observer.unobserve(prevEl);\n    });\n  });\n}\n</script>\n\n<template>\n  <div ref=\"rootRef\" :class=\"classes.root\">\n    <div ref=\"referenceCell\" :class=\"classes.referenceCell\">x</div>\n    <div :class=\"['pl-scrollable', classes.table]\">\n      <div :class=\"classes.sidebar\">\n        <PhylogeneticTree\n          v-if=\"props.widgets.includes('tree') && props.phylogeneticTree\"\n          :tree=\"props.phylogeneticTree\"\n          :class=\"classes.phylogeneticTree\"\n        />\n        <div :class=\"classes.labels\">\n          <template\n            v-for=\"({ rows }, columnIndex) of props.labels\"\n            :key=\"columnIndex\"\n          >\n            <div v-for=\"(row, rowIndex) of rows\" :key=\"rowIndex\">\n              {{ row }}\n            </div>\n          </template>\n        </div>\n      </div>\n      <template v-if=\"letterSpacing !== undefined\">\n        <div\n          v-for=\"(column, columnIndex) of props.sequences\"\n          :key=\"columnIndex\"\n          :class=\"classes.sequenceColumn\"\n        >\n          <div :class=\"classes.sequenceHeader\">\n            <div\n              v-show=\"props.sequences.length > 1\"\n              :class=\"classes.sequenceName\"\n            >\n              {{ column.name }}\n            </div>\n            <Consensus\n              v-if=\"props.widgets.includes('consensus')\"\n              :residue-counts=\"column.residueCounts\"\n              :labels-class=\"classes.sequenceRow\"\n            />\n            <SeqLogo\n              v-if=\"props.widgets.includes('seqLogo')\"\n              :residue-counts=\"column.residueCounts\"\n            />\n          </div>\n          <div\n            :class=\"classes.sequenceRowsContainer\"\n            :style=\"{\n              backgroundImage: column.highlightImageUrl\n                ? `url(${column.highlightImageUrl})`\n                : undefined,\n            }\"\n          >\n            <div\n              v-for=\"(row, rowIndex) of column.rows\"\n              :key=\"rowIndex\"\n              :class=\"classes.sequenceRow\"\n            >\n              {{ row }}\n            </div>\n          </div>\n        </div>\n      </template>\n      <div ref=\"corner\" :class=\"classes.corner\" />\n    </div>\n    <Legend\n      v-if=\"props.widgets.includes('legend') && props.highlightLegend\"\n      :legend=\"props.highlightLegend\"\n    />\n  </div>\n</template>\n\n<style module>\n.root {\n  display: flex;\n  flex-direction: column;\n  gap: 12px;\n  min-block-size: 0;\n  -webkit-print-color-adjust: exact;\n  print-color-adjust: exact;\n  container-type: inline-size;\n\n  &[data-pre-print] {\n    container-type: unset;\n\n    .sidebar {\n      max-inline-size: unset;\n    }\n  }\n}\n\n.referenceCell {\n  position: fixed;\n  visibility: hidden;\n  font-family: Spline Sans Mono;\n  font-weight: 600;\n  line-height: v-bind('targetCellBlockSize');\n}\n\n.table {\n  display: grid;\n  grid-template-columns:\n    [sidebar-start] auto [sidebar-end] repeat(\n    v-bind('props.sequences.length'),\n    [column-start] auto [column-end]\n  );\n  grid-template-rows:\n    [header-start] auto [header-end]\n    repeat(v-bind('rowCount'), [row-start] auto [row-end]);\n  justify-content: start;\n  position: relative;\n  @media print {\n    overflow: visible;\n  }\n}\n\n.sidebar {\n  grid-column: sidebar;\n  grid-row: 1 row-start / -1 row-end;\n  display: grid;\n  grid-template-rows: subgrid;\n  position: sticky;\n  inset-inline-start: 0;\n  background-color: #fff;\n  inline-size: min-content;\n  max-inline-size: 30cqi;\n  overflow: scroll;\n  overscroll-behavior-inline: none;\n  scrollbar-width: none;\n}\n\n.phylogeneticTree {\n  grid-row: 1 row-start / -1 row-end;\n}\n\n.labels {\n  grid-row: 1 row-start / -1 row-end;\n  display: grid;\n  grid-template-columns: repeat(v-bind('props.labels.length'), auto);\n  grid-template-rows: subgrid;\n  grid-auto-flow: column;\n  column-gap: 12px;\n  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package/dist/MultiSequenceAlignmentView.vue3.js

@@ -0,0 +1,31 @@
+(function(){"use strict";try{if(typeof document<"u"){var e=document.createElement("style");e.appendChild(document.createTextNode("._root_34869_2{display:flex;flex-direction:column;gap:12px;min-block-size:0;-webkit-print-color-adjust:exact;print-color-adjust:exact;container-type:inline-size}._root_34869_2[data-pre-print]{container-type:unset}._root_34869_2[data-pre-print] ._sidebar_34869_14{max-inline-size:unset}._referenceCell_34869_20{position:fixed;visibility:hidden;font-family:Spline Sans Mono;font-weight:600;line-height:var(--v16792884)}._table_34869_28{display:grid;grid-template-columns:[sidebar-start] auto [sidebar-end] repeat(var(--v5f937812),[column-start] auto [column-end]);grid-template-rows:[header-start] auto [header-end] repeat(var(--v832f3168),[row-start] auto [row-end]);justify-content:start;position:relative}@media print{._table_34869_28{overflow:visible}}._sidebar_34869_14{grid-column:sidebar;grid-row:1 row-start / -1 row-end;display:grid;grid-template-rows:subgrid;position:sticky;inset-inline-start:0;background-color:#fff;inline-size:min-content;max-inline-size:30cqi;overflow:scroll;overscroll-behavior-inline:none;scrollbar-width:none}._phylogeneticTree_34869_60{grid-row:1 row-start / -1 row-end}._labels_34869_64{grid-row:1 row-start / -1 row-end;display:grid;grid-template-columns:repeat(var(--v71429b60),auto);grid-template-rows:subgrid;grid-auto-flow:column;column-gap:12px;padding-inline-end:12px;font-family:Spline Sans Mono;line-height:var(--v16792884);white-space:nowrap}._sequenceColumn_34869_77{grid-row:header-start / -1 row-end;display:grid;grid-template-rows:subgrid}._sequenceColumn_34869_77+._sequenceColumn_34869_77{margin-inline-start:24px}._sequenceHeader_34869_86{grid-row:header;display:flex;flex-direction:column;justify-content:end;min-inline-size:0;position:sticky;inset-block-start:0;background-color:#fff}._sequenceName_34869_97{margin-block-end:4px;font-weight:700;line-height:20px;inline-size:fit-content;position:sticky;inset-inline-start:var(--v49944722)}._sequenceRowsContainer_34869_106{grid-row:1 row-start / -1 row-end;display:grid;grid-template-rows:subgrid}._sequenceRow_34869_106{font-family:Spline Sans Mono;font-weight:600;line-height:var(--v16792884);letter-spacing:var(--v622f88b4);text-indent:calc(var(--v622f88b4) / 2);inline-size:calc-size(min-content,round(down,size,var(--c9eaa2b8)));white-space:nowrap}._corner_34869_125{grid-column:sidebar;grid-row:header;position:sticky;inset-inline-start:0;inset-block-start:0;background-color:#fff}")),document.head.appendChild(e)}}catch(i){console.error("vite-plugin-css-injected-by-js",i)}})();
+const e = "_root_34869_2", n = "_sidebar_34869_14", s = "_referenceCell_34869_20", o = "_table_34869_28", c = "_phylogeneticTree_34869_60", _ = "_labels_34869_64", r = "_sequenceColumn_34869_77", t = "_sequenceHeader_34869_86", l = "_sequenceName_34869_97", a = "_sequenceRowsContainer_34869_106", u = "_sequenceRow_34869_106", q = "_corner_34869_125", b = {
+  root: e,
+  sidebar: n,
+  referenceCell: s,
+  table: o,
+  phylogeneticTree: c,
+  labels: _,
+  sequenceColumn: r,
+  sequenceHeader: t,
+  sequenceName: l,
+  sequenceRowsContainer: a,
+  sequenceRow: u,
+  corner: q
+};
+export {
+  q as corner,
+  b as default,
+  _ as labels,
+  c as phylogeneticTree,
+  s as referenceCell,
+  e as root,
+  r as sequenceColumn,
+  t as sequenceHeader,
+  l as sequenceName,
+  u as sequenceRow,
+  a as sequenceRowsContainer,
+  n as sidebar,
+  o as table
+};
+//# sourceMappingURL=MultiSequenceAlignmentView.vue3.js.map

package/dist/MultiSequenceAlignmentView.vue3.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiSequenceAlignmentView.vue3.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;"}

package/dist/PhylogeneticTree.vue.d.ts

@@ -0,0 +1,8 @@
+import { TreeNodeData } from './phylogenetic-tree.worker';
+type __VLS_Props = {
+    tree: TreeNodeData[];
+};
+declare const _default: import('vue').DefineComponent<__VLS_Props, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<__VLS_Props> & Readonly<{}>, {}, {}, {}, {}, string, import('vue').ComponentProvideOptions, false, {
+    plotEl: HTMLDivElement;
+}, any>;
+export default _default;

package/dist/PhylogeneticTree.vue.js

@@ -0,0 +1,10 @@
+import o from "./PhylogeneticTree.vue2.js";
+import s from "./PhylogeneticTree.vue3.js";
+import e from "./_virtual/_plugin-vue_export-helper.js";
+const t = {
+  $style: s
+}, f = /* @__PURE__ */ e(o, [["__cssModules", t]]);
+export {
+  f as default
+};
+//# sourceMappingURL=PhylogeneticTree.vue.js.map

package/dist/PhylogeneticTree.vue.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"PhylogeneticTree.vue.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;"}