npm - @milaboratories/graph-maker - Versions diffs - 1.1.171 → 1.1.173 - Mend

@milaboratories/graph-maker 1.1.171 → 1.1.173

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (11) hide show

package/dist/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.js CHANGED Viewed

@@ -1,45 +1,45 @@
-import { isContinuousDataMapping as T } from "../../constantsCommon.js";
-import { AMINOACID_COLOR_MAPPING as L, NUCLEOTIDE_COLOR_MAPPING as A, PALETTE_MAP as b, DEFAULT_BLACK as y, DEFAULT_CONTINUOUS_PALETTE as F, DEFAULT_DOT_SHAPE as I } from "../../constantsAesthetic.js";
+import { isContinuousDataMapping as w } from "../../constantsCommon.js";
+import { AMINOACID_COLOR_MAPPING as L, NUCLEOTIDE_COLOR_MAPPING as b, PALETTE_MAP as A, DEFAULT_BLACK as M, DEFAULT_CONTINUOUS_PALETTE as F, DEFAULT_DOT_SHAPE as I } from "../../constantsAesthetic.js";
 import { DEFAULT_DOT_SIZE as V, DEFAULT_DOT_RANGE as _, isAestheticMappingContinuous as P, createContinuousMappingFromPalette as N } from "../../dataBindAes.js";
-function x(r) {
-  const l = [];
-  if (r.overall.data.testMethod && r.overall.validity.testMethod && l.push({
+function x(t) {
+  const r = [];
+  if (t.overall.data.testMethod && t.overall.validity.testMethod && r.push({
     type: "stat",
     statType: "overall",
-    testMethod: r.overall.data.testMethod
-  }), r.referenceGroup.data.testMethod && r.referenceGroup.validity.testMethod && r.referenceGroup.validity.referenceGroup) {
-    const p = {
+    testMethod: t.overall.data.testMethod
+  }), t.referenceGroup.data.testMethod && t.referenceGroup.validity.testMethod && t.referenceGroup.validity.referenceGroup) {
+    const c = {
       type: "stat",
       statType: "referenceGroup",
-      testMethod: r.referenceGroup.data.testMethod,
-      referenceGroup: r.referenceGroup.data.referenceGroup,
-      format: r.referenceGroup.data.format,
-      ns: r.referenceGroup.data.ns
+      testMethod: t.referenceGroup.data.testMethod,
+      referenceGroup: t.referenceGroup.data.referenceGroup,
+      format: t.referenceGroup.data.format,
+      ns: t.referenceGroup.data.ns
     };
-    r.referenceGroup.data.correctionMethod !== "none" && (p.correctionMethod = r.referenceGroup.data.correctionMethod), l.push(p);
+    t.referenceGroup.data.correctionMethod !== "none" && (c.correctionMethod = t.referenceGroup.data.correctionMethod), r.push(c);
   }
-  if (r.pairwise.data.testMethod && r.pairwise.validity.testMethod) {
-    const p = {
+  if (t.pairwise.data.testMethod && t.pairwise.validity.testMethod) {
+    const c = {
       type: "stat",
       statType: "pairwise",
-      testMethod: r.pairwise.data.testMethod,
-      format: r.pairwise.data.format,
-      ns: r.pairwise.data.ns
+      testMethod: t.pairwise.data.testMethod,
+      format: t.pairwise.data.format,
+      ns: t.pairwise.data.ns
     };
-    r.referenceGroup.data.correctionMethod !== "none" && (p.correctionMethod = r.referenceGroup.data.correctionMethod), l.push(p);
+    t.referenceGroup.data.correctionMethod !== "none" && (c.correctionMethod = t.referenceGroup.data.correctionMethod), r.push(c);
   }
-  return l;
+  return r;
 }
-function B(r, l, p, u, d) {
-  const o = [], n = u.components.primaryGrouping.selectorStates.length > 0, c = u.components.secondaryGrouping.selectorStates.length > 0;
-  function i(t, f = !1) {
-    return t === null ? c ? { type: "secondaryGrouping" } : n && !f ? { type: "primaryGrouping" } : { type: "secondaryGrouping" } : t;
+function B(t, r, c, d, f) {
+  const n = [], h = d.components.primaryGrouping.selectorStates.length > 0, p = d.components.secondaryGrouping.selectorStates.length > 0;
+  function i(o, l = !1) {
+    return o === null ? p ? { type: "secondaryGrouping" } : h && !l ? { type: "primaryGrouping" } : { type: "secondaryGrouping" } : o;
   }
-  return r.forEach((t) => {
-    var f;
-    if (t === "box") {
-      const e = l[t];
-      o.push({
+  return t.forEach((o) => {
+    var l;
+    if (o === "box") {
+      const e = r[o];
+      n.push({
         type: "box",
         aes: {
           showOutliers: e.showOutliers,
@@ -51,9 +51,9 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "binnedDots") {
-      const e = l[t];
-      o.push({
+    if (o === "binnedDots") {
+      const e = r[o];
+      n.push({
         type: "binnedDots",
         aes: {
           showOutliers: e.showOutliers,
@@ -63,9 +63,9 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "jitteredDots") {
-      const e = l[t];
-      o.push({
+    if (o === "jitteredDots") {
+      const e = r[o];
+      n.push({
         type: "dot",
         aes: {
           showOutliers: e.showOutliers,
@@ -76,9 +76,9 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "violin") {
-      const e = l[t];
-      o.push({
+    if (o === "violin") {
+      const e = r[o];
+      n.push({
         type: "violin",
         stat: {
           trim: e.trim
@@ -94,9 +94,9 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "bar") {
-      const e = l[t];
-      o.push({
+    if (o === "bar") {
+      const e = r[o];
+      n.push({
         type: "bar",
         height: e.height,
         aes: {
@@ -106,9 +106,9 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "stackedBar") {
-      const e = l[t];
-      o.push({
+    if (o === "stackedBar") {
+      const e = r[o];
+      n.push({
         type: "stackedBar",
         normalize: e.normalize,
         height: e.height,
@@ -119,9 +119,9 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "stackedArea") {
-      const e = l[t];
-      o.push({
+    if (o === "stackedArea") {
+      const e = r[o];
+      n.push({
         type: "stackedArea",
         normalize: e.normalize,
         showBars: e.showBars,
@@ -134,9 +134,9 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "line") {
-      const e = l[t];
-      o.push({
+    if (o === "line") {
+      const e = r[o];
+      n.push({
         type: "line",
         pointsValues: e.pointsValues,
         emptyGroupValue: e.emptyGroupValue ?? 0,
@@ -149,9 +149,9 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "errorbar") {
-      const e = l[t];
-      o.push({
+    if (o === "errorbar") {
+      const e = r[o];
+      n.push({
         type: "errorbar",
         pointsValues: e.pointsValues,
         interval: e.interval,
@@ -163,9 +163,9 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "sina") {
-      const e = l[t];
-      o.push({
+    if (o === "sina") {
+      const e = r[o];
+      n.push({
         type: "sina",
         aes: {
           showOutliers: e.showOutliers,
@@ -174,81 +174,88 @@ function B(r, l, p, u, d) {
         }
       });
     }
-    if (t === "logo" && c) {
-      const e = l[t], m = ((f = d.getSourceInfo(u.components.secondaryGrouping.selectorStates[0].selectedSource).spec.domain) == null ? void 0 : f["pl7.app/alphabet"]) === "aminoacid";
-      o.push({
+    if (o === "logo" && p) {
+      const e = r[o], y = ((l = f.getSourceInfo(d.components.secondaryGrouping.selectorStates[0].selectedSource).spec.domain) == null ? void 0 : l["pl7.app/alphabet"]) === "aminoacid";
+      n.push({
         type: "logo",
         normalize: e.normalize,
         aes: {
           opacity: e.opacity,
-          dotFill: m ? L : A
+          dotFill: y ? L : b
         }
       });
     }
-  }), n && !c && o.push(...x(p)), o;
+  }), h && !p && n.push(...x(c)), n;
 }
-function z(r, l, p, u) {
-  if (r) {
-    const d = T(l) ? l : { column: r.value, range: _ }, o = [1 / 0, -1 / 0];
-    return p.values[r.value].forEach((n) => {
-      const c = Number(n);
-      c < o[0] && (o[0] = c), c > o[1] && (o[1] = c);
-    }), { columnName: r, domain: o, range: [d.range.min, d.range.max] };
+function z(t, r, c, d) {
+  if (t) {
+    const f = w(r) ? r : { column: t.value, range: _ }, n = [1 / 0, -1 / 0];
+    return c.values[t.value].forEach((h) => {
+      const p = Number(h);
+      p < n[0] && (n[0] = p), p > n[1] && (n[1] = p);
+    }), { columnName: t, domain: n, range: [f.range.min, f.range.max] };
   }
-  return T(l) ? u : l ?? u;
+  return w(r) ? d : r ?? d;
 }
-function w(r, l, p, u) {
-  const d = p.find((n) => n.value === r);
-  let o = [1 / 0, -1 / 0];
-  if (d) {
-    const { range: n, palette: c, midPoint: i, log: t } = l, f = (n == null ? void 0 : n.minValue) === null || (n == null ? void 0 : n.minValue) === void 0, e = (n == null ? void 0 : n.maxValue) === null || (n == null ? void 0 : n.maxValue) === void 0;
-    if ((f || e) && u.values[d.value].forEach((h) => {
-      const m = Number(h);
-      f && m < o[0] && (o[0] = m), e && m > o[1] && (o[1] = m);
-    }), f || (o[0] = n == null ? void 0 : n.minValue), e || (o[1] = n == null ? void 0 : n.maxValue), i != null) {
-      const h = Math.max(Math.abs(i - o[0]), Math.abs(i - o[1]));
-      o[0] = i - h, o[1] = i + h;
+function D(t, r, c, d) {
+  const f = c.find((n) => n.value === t);
+  if (f) {
+    console.log("column", f), console.log("value", r);
+    const { range: n, palette: h, midPoint: p, log: i } = r;
+    let { minValue: o, maxValue: l } = n ?? {}, e = !1;
+    const m = o == null, y = l == null;
+    console.log("minValueMissed", m), console.log("maxValueMissed", y);
+    const u = [1 / 0, -1 / 0];
+    (m || y) && (d.values[f.value].forEach((s) => {
+      const g = Number(s);
+      g < u[0] && (u[0] = g), g > u[1] && (u[1] = g);
+    }), console.log("bounds", u)), m && y ? (o = u[0], l = u[1]) : m ? o = l > u[0] ? u[0] : u[1] : y && (l = o < u[1] ? u[1] : u[0]), console.log("minValue", o, "maxValue", l), o != null && l !== null && l !== void 0 && o > l && (e = !0, [o, l] = [l, o]);
+    const C = [o, l];
+    if (p != null) {
+      const s = Math.max(Math.abs(p - o), Math.abs(p - l));
+      C[0] = p - s, C[1] = p + s;
     }
-    return {
-      columnName: d,
-      domain: o,
-      range: b[c].colors,
-      type: t ? "log" : "linear"
+    const a = [...A[h].colors];
+    return e && a.reverse(), {
+      columnName: f,
+      domain: C,
+      range: a,
+      type: i ? "log" : "linear"
     };
   }
-  return y;
+  return M;
 }
-function R(r, l, p, u, d, o, n = [], c = V) {
-  var C, M;
+function R(t, r, c, d, f, n, h = [], p = V) {
+  var u, C;
   const i = [];
-  function t(a, s, D, G = !1) {
-    var v;
+  function o(a, s, g, v = !1) {
+    var G;
     if (s.length) {
-      const O = s.length ? (v = o.getSourceInfo(s[0])) == null ? void 0 : v.type : void 0, E = O === "String" || !G ? { type: "grouping", value: s[0] } : w(s[0], N(F), n, p), g = d[s[0]];
-      return a === null || O === "String" || !G || !P(g) ? E : w(s[0], g, n, p);
+      const O = s.length ? (G = n.getSourceInfo(s[0])) == null ? void 0 : G.type : void 0, E = O === "String" || !v ? { type: "grouping", value: s[0] } : D(s[0], N(F), h, c), T = f[s[0]];
+      return a === null || O === "String" || !v || !P(T) ? E : D(s[0], T, h, c);
     }
-    return typeof a == "object" ? D : a;
+    return typeof a == "object" ? g : a;
   }
-  const f = u.components.grouping.selectorStates.map((a) => a.selectedSource), e = ((C = u.components.shape) == null ? void 0 : C.selectorStates.map((a) => a.selectedSource)) ?? [], h = (M = u.components.size) == null ? void 0 : M.selectorStates.map((a) => a.selectedSource)[0], m = h ? n.find((a) => a.value === h) : void 0;
-  return r.forEach((a) => {
+  const l = d.components.grouping.selectorStates.map((a) => a.selectedSource), e = ((u = d.components.shape) == null ? void 0 : u.selectorStates.map((a) => a.selectedSource)) ?? [], m = (C = d.components.size) == null ? void 0 : C.selectorStates.map((a) => a.selectedSource)[0], y = m ? h.find((a) => a.value === m) : void 0;
+  return t.forEach((a) => {
     if (a === "dots") {
-      const s = l[a];
+      const s = r[a];
       i.push({
         type: "dots",
         aes: {
-          dotFill: t(s.dotFill, f, y, !0),
-          dotShape: t(s.dotShape, e, I),
-          dotSize: z(m, s.dotSize, p, c)
+          dotFill: o(s.dotFill, l, M, !0),
+          dotShape: o(s.dotShape, e, I),
+          dotSize: z(y, s.dotSize, c, p)
         }
       });
     }
     if (a === "curve") {
-      const s = l[a];
+      const s = r[a];
       i.push({
         type: "curve",
         smoothing: s.smoothing,
         aes: {
-          lineColor: t(s.lineColor, f, y, !0)
+          lineColor: o(s.lineColor, l, M, !0)
         }
       });
     }

package/dist/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"getLayersDataFromForms.js","sources":["../../../../src/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.ts"],"sourcesContent":["import {\n ColorAes,\n getDefaultLayersSettings,\n NumberRange,\n LayersSettings,\n MappingLink,\n DiscreteStatisticsState,\n ColumnNameSchema,\n ContinuousDataMappingSize,\n isContinuousDataMapping,\n ContinuousDataMappingForGraph\n} from '../../constantsCommon';\nimport {\n Layer,\n ReactiveState\n} from '../../types';\nimport {\n DiscreteUIState, InputGuide,\n InputState,\n PlotDataAndSettings,\n ScatterplotUIState\n} from '@milaboratories/pf-plots';\nimport { DotShape, LineType } from '../../components/AesSettings/types';\nimport {\n AMINOACID_COLOR_MAPPING,\n DEFAULT_BLACK,\n DEFAULT_CONTINUOUS_PALETTE,\n DEFAULT_DOT_SHAPE, NUCLEOTIDE_COLOR_MAPPING,\n PALETTE_MAP\n} from '../../constantsAesthetic';\nimport {\n AestheticMappingContinuous, createContinuousMappingFromPalette,\n DEFAULT_DOT_RANGE,\n DEFAULT_DOT_SIZE\n} from '../../dataBindAes';\nimport { ScatterplotSettings } from '@milaboratories/miplots4';\nimport { isAestheticMappingContinuous } from '../../dataBindAes';\n\nexport function getStatLayers(statisticsSettings: DiscreteStatisticsState) {\n const layers: ChartLayerSettings[] = [];\n if (\n statisticsSettings.overall.data.testMethod &&\n statisticsSettings.overall.validity.testMethod\n ) {\n layers.push({\n type: 'stat',\n statType: 'overall',\n testMethod: statisticsSettings.overall.data.testMethod\n });\n }\n if (\n statisticsSettings.referenceGroup.data.testMethod &&\n statisticsSettings.referenceGroup.validity.testMethod &&\n statisticsSettings.referenceGroup.validity.referenceGroup\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'referenceGroup',\n testMethod: statisticsSettings.referenceGroup.data.testMethod,\n referenceGroup: statisticsSettings.referenceGroup.data.referenceGroup,\n format: statisticsSettings.referenceGroup.data.format,\n ns: statisticsSettings.referenceGroup.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n if (\n statisticsSettings.pairwise.data.testMethod &&\n statisticsSettings.pairwise.validity.testMethod\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'pairwise',\n testMethod: statisticsSettings.pairwise.data.testMethod,\n format: statisticsSettings.pairwise.data.format,\n ns: statisticsSettings.pairwise.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n return layers;\n}\n\nexport function getDiscreteLayersSettings(\n layers: Layer[],\n layerSettings: LayersSettings,\n statisticsSettings: DiscreteStatisticsState,\n optionsState: DiscreteUIState,\n inputGuide: InputGuide<InputState>\n): ChartLayerSettings[] {\n const result: ChartLayerSettings[] = [];\n const hasPrimaryGrouping =\n optionsState.components.primaryGrouping.selectorStates.length > 0;\n const hasSecondaryGrouping =\n optionsState.components.secondaryGrouping.selectorStates.length > 0;\n // If user didn't touch layers settings, some aes that can be mapped to groupings has 'null' value - we set them to secondary or primary grouping if available\n // for 'line', 'errorbar' layer it isn't possible to set primary grouping as a color aes\n function useDefaultColor(\n value: ColorAes \| null,\n onlySecondaryAvailable = false\n ) {\n if (value === null) {\n if (hasSecondaryGrouping) {\n return { type: 'secondaryGrouping' };\n }\n if (hasPrimaryGrouping && !onlySecondaryAvailable) {\n return { type: 'primaryGrouping' };\n }\n return { type: 'secondaryGrouping' };\n }\n return value;\n }\n\n layers.forEach((layer) => {\n if (layer === 'box') {\n const settings = layerSettings[layer];\n result.push({\n type: 'box',\n aes: {\n showOutliers: settings.showOutliers,\n dotShape: settings.dotShape,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'binnedDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'binnedDots',\n aes: {\n showOutliers: settings.showOutliers,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'jitteredDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'dot',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape,\n lineColor: settings.lineColor,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'violin') {\n const settings = layerSettings[layer];\n result.push({\n type: 'violin',\n stat: {\n trim: settings.trim\n },\n aes: {\n showQuartiles: settings.showQuartiles,\n medianLineStyle: settings.medianLineStyle,\n quartilesLineStyle: settings.quartilesLineStyle,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'bar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'bar',\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'stackedBar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedBar',\n normalize: settings.normalize,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'stackedArea') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedArea',\n normalize: settings.normalize,\n showBars: settings.showBars,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n barsOpacity: settings.barsOpacity,\n areaOpacity: settings.areaOpacity,\n }\n });\n }\n if (layer === 'line') {\n const settings = layerSettings[layer];\n result.push({\n type: 'line',\n pointsValues: settings.pointsValues,\n emptyGroupValue: settings.emptyGroupValue ?? 0,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n lineShape: settings.lineType,\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'errorbar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'errorbar',\n pointsValues: settings.pointsValues,\n interval: settings.interval,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'sina') {\n const settings = layerSettings[layer];\n result.push({\n type: 'sina',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape\n }\n });\n }\n if (layer === 'logo' && hasSecondaryGrouping) {\n const settings = layerSettings[layer];\n const secondaryGroupingInfo = inputGuide.getSourceInfo(optionsState.components.secondaryGrouping.selectorStates[0].selectedSource);\n const isProtein = secondaryGroupingInfo.spec.domain?.['pl7.app/alphabet'] === 'aminoacid';\n result.push({\n type: 'logo',\n normalize: settings.normalize,\n aes: {\n opacity: settings.opacity,\n dotFill: isProtein ? AMINOACID_COLOR_MAPPING : NUCLEOTIDE_COLOR_MAPPING\n }\n });\n }\n });\n if (hasPrimaryGrouping && !hasSecondaryGrouping) {\n result.push(...getStatLayers(statisticsSettings));\n }\n return result;\n}\n\nfunction getDotSize(\n column: ColumnNameSchema \| undefined,\n dotSize: ContinuousDataMappingSize \| number \| null,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n defaultDotSize: number\n): number \| { columnName: ColumnNameSchema, domain: number[], range: number[] } {\n if (column) {\n const mapping = isContinuousDataMapping(dotSize) ? dotSize : { column: column.value, range: DEFAULT_DOT_RANGE };\n const domain = [Infinity, -Infinity];\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < domain[0]) {\n domain[0] = value;\n }\n if (value > domain[1]) {\n domain[1] = value;\n }\n });\n return { columnName: column, domain, range: [mapping.range.min, mapping.range.max] };\n }\n return isContinuousDataMapping(dotSize) ? defaultDotSize : dotSize ?? defaultDotSize;\n}\n\nfunction getContinuousColor<T extends string>(\n columnKey: string,\n value: AestheticMappingContinuous,\n groupingColumns: ColumnNameSchema[],\n dataByColumns: PlotDataAndSettings['data']['byColumns']\n): T \| ContinuousDataMappingForGraph<T> {\n const column = groupingColumns.find(groupingColumn => groupingColumn.value === columnKey);\n let domain = [Infinity, -Infinity];\n if (column) {\n const { range, palette, midPoint, log } = value;\n const minValueMissed = range?.minValue === null \|\| range?.minValue === undefined;\n const maxValueMissed = range?.maxValue === null \|\| range?.maxValue === undefined;\n if (minValueMissed \|\| maxValueMissed) {\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (minValueMissed && value < domain[0]) {\n domain[0] = value;\n }\n if (maxValueMissed && value > domain[1]) {\n domain[1] = value;\n }\n });\n }\n if (!minValueMissed) {\n domain[0] = range?.minValue as number;\n }\n if (!maxValueMissed) {\n domain[1] = range?.maxValue as number;\n }\n if (midPoint !== null && midPoint !== undefined) {\n const maxDistance = Math.max(Math.abs(midPoint - domain[0]), Math.abs(midPoint - domain[1]));\n domain[0] = midPoint - maxDistance;\n domain[1] = midPoint + maxDistance;\n }\n\n return {\n columnName: column,\n domain,\n range: PALETTE_MAP[palette].colors,\n type: log ? 'log' : 'linear'\n } as ContinuousDataMappingForGraph<T>;\n }\n return DEFAULT_BLACK as T;\n}\n\nexport function getScatterplotLayersSettings(\n layers: Layer[],\n layerSettings: ReturnType<typeof getDefaultLayersSettings>,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n optionsState: ScatterplotUIState,\n dataBindAes: ReactiveState['dataBindAes'],\n inputGuide: InputGuide<InputState>,\n groupingSchema: ColumnNameSchema[] = [],\n defaultDotSize = DEFAULT_DOT_SIZE\n): ScatterplotSettings['layers'] {\n const result: ScatterplotSettings['layers'] = [];\n\n function useDefault<T extends string>(value: T \| MappingLink \| null, columns: string[], defaultValue: T, continousAvailable = false): T \| {\n type: 'grouping',\n value: string\n } \| ContinuousDataMappingForGraph<T> {\n if (columns.length) {\n const valueType = columns.length ? inputGuide.getSourceInfo(columns[0])?.type : undefined;\n const defaultByColumn = (valueType === 'String' \|\| !continousAvailable)\n ? { type: 'grouping', value: columns[0] } as { type: 'grouping', value: string }\n : getContinuousColor<T>(columns[0], createContinuousMappingFromPalette(DEFAULT_CONTINUOUS_PALETTE), groupingSchema, dataByColumns);\n\n const savedMapping = dataBindAes[columns[0]];\n\n if (value === null \|\| (valueType === 'String' \|\| !continousAvailable) \|\| !isAestheticMappingContinuous(savedMapping)) {\n return defaultByColumn;\n }\n return getContinuousColor<T>(columns[0], savedMapping as AestheticMappingContinuous, groupingSchema, dataByColumns);\n }\n\n return typeof value === 'object' ? defaultValue : value as T;\n }\n\n const grouping = optionsState.components.grouping.selectorStates.map((s) => s.selectedSource);\n const shape = optionsState.components.shape?.selectorStates.map((s) => s.selectedSource) ?? 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1	+ {"version":3,"file":"getLayersDataFromForms.js","sources":["../../../../src/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.ts"],"sourcesContent":["import {\n ColorAes,\n getDefaultLayersSettings,\n NumberRange,\n LayersSettings,\n MappingLink,\n DiscreteStatisticsState,\n ColumnNameSchema,\n ContinuousDataMappingSize,\n isContinuousDataMapping,\n ContinuousDataMappingForGraph\n} from '../../constantsCommon';\nimport {\n Layer,\n ReactiveState\n} from '../../types';\nimport {\n DiscreteUIState, InputGuide,\n InputState,\n PlotDataAndSettings,\n ScatterplotUIState\n} from '@milaboratories/pf-plots';\nimport { DotShape, LineType } from '../../components/AesSettings/types';\nimport {\n AMINOACID_COLOR_MAPPING,\n DEFAULT_BLACK,\n DEFAULT_CONTINUOUS_PALETTE,\n DEFAULT_DOT_SHAPE, NUCLEOTIDE_COLOR_MAPPING,\n PALETTE_MAP\n} from '../../constantsAesthetic';\nimport {\n AestheticMappingContinuous, createContinuousMappingFromPalette,\n DEFAULT_DOT_RANGE,\n DEFAULT_DOT_SIZE\n} from '../../dataBindAes';\nimport { ScatterplotSettings } from '@milaboratories/miplots4';\nimport { isAestheticMappingContinuous } from '../../dataBindAes';\n\nexport function getStatLayers(statisticsSettings: DiscreteStatisticsState) {\n const layers: ChartLayerSettings[] = [];\n if (\n statisticsSettings.overall.data.testMethod &&\n statisticsSettings.overall.validity.testMethod\n ) {\n layers.push({\n type: 'stat',\n statType: 'overall',\n testMethod: statisticsSettings.overall.data.testMethod\n });\n }\n if (\n statisticsSettings.referenceGroup.data.testMethod &&\n statisticsSettings.referenceGroup.validity.testMethod &&\n statisticsSettings.referenceGroup.validity.referenceGroup\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'referenceGroup',\n testMethod: statisticsSettings.referenceGroup.data.testMethod,\n referenceGroup: statisticsSettings.referenceGroup.data.referenceGroup,\n format: statisticsSettings.referenceGroup.data.format,\n ns: statisticsSettings.referenceGroup.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n if (\n statisticsSettings.pairwise.data.testMethod &&\n statisticsSettings.pairwise.validity.testMethod\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'pairwise',\n testMethod: statisticsSettings.pairwise.data.testMethod,\n format: statisticsSettings.pairwise.data.format,\n ns: statisticsSettings.pairwise.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n return layers;\n}\n\nexport function getDiscreteLayersSettings(\n layers: Layer[],\n layerSettings: LayersSettings,\n statisticsSettings: DiscreteStatisticsState,\n optionsState: DiscreteUIState,\n inputGuide: InputGuide<InputState>\n): ChartLayerSettings[] {\n const result: ChartLayerSettings[] = [];\n const hasPrimaryGrouping =\n optionsState.components.primaryGrouping.selectorStates.length > 0;\n const hasSecondaryGrouping =\n optionsState.components.secondaryGrouping.selectorStates.length > 0;\n // If user didn't touch layers settings, some aes that can be mapped to groupings has 'null' value - we set them to secondary or primary grouping if available\n // for 'line', 'errorbar' layer it isn't possible to set primary grouping as a color aes\n function useDefaultColor(\n value: ColorAes \| null,\n onlySecondaryAvailable = false\n ) {\n if (value === null) {\n if (hasSecondaryGrouping) {\n return { type: 'secondaryGrouping' };\n }\n if (hasPrimaryGrouping && !onlySecondaryAvailable) {\n return { type: 'primaryGrouping' };\n }\n return { type: 'secondaryGrouping' };\n }\n return value;\n }\n\n layers.forEach((layer) => {\n if (layer === 'box') {\n const settings = layerSettings[layer];\n result.push({\n type: 'box',\n aes: {\n showOutliers: settings.showOutliers,\n dotShape: settings.dotShape,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'binnedDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'binnedDots',\n aes: {\n showOutliers: settings.showOutliers,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'jitteredDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'dot',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape,\n lineColor: settings.lineColor,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'violin') {\n const settings = layerSettings[layer];\n result.push({\n type: 'violin',\n stat: {\n trim: settings.trim\n },\n aes: {\n showQuartiles: settings.showQuartiles,\n medianLineStyle: settings.medianLineStyle,\n quartilesLineStyle: settings.quartilesLineStyle,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'bar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'bar',\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'stackedBar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedBar',\n normalize: settings.normalize,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'stackedArea') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedArea',\n normalize: settings.normalize,\n showBars: settings.showBars,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n barsOpacity: settings.barsOpacity,\n areaOpacity: settings.areaOpacity,\n }\n });\n }\n if (layer === 'line') {\n const settings = layerSettings[layer];\n result.push({\n type: 'line',\n pointsValues: settings.pointsValues,\n emptyGroupValue: settings.emptyGroupValue ?? 0,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n lineShape: settings.lineType,\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'errorbar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'errorbar',\n pointsValues: settings.pointsValues,\n interval: settings.interval,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'sina') {\n const settings = layerSettings[layer];\n result.push({\n type: 'sina',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape\n }\n });\n }\n if (layer === 'logo' && hasSecondaryGrouping) {\n const settings = layerSettings[layer];\n const secondaryGroupingInfo = inputGuide.getSourceInfo(optionsState.components.secondaryGrouping.selectorStates[0].selectedSource);\n const isProtein = secondaryGroupingInfo.spec.domain?.['pl7.app/alphabet'] === 'aminoacid';\n result.push({\n type: 'logo',\n normalize: settings.normalize,\n aes: {\n opacity: settings.opacity,\n dotFill: isProtein ? AMINOACID_COLOR_MAPPING : NUCLEOTIDE_COLOR_MAPPING\n }\n });\n }\n });\n if (hasPrimaryGrouping && !hasSecondaryGrouping) {\n result.push(...getStatLayers(statisticsSettings));\n }\n return result;\n}\n\nfunction getDotSize(\n column: ColumnNameSchema \| undefined,\n dotSize: ContinuousDataMappingSize \| number \| null,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n defaultDotSize: number\n): number \| { columnName: ColumnNameSchema, domain: number[], range: number[] } {\n if (column) {\n const mapping = isContinuousDataMapping(dotSize) ? dotSize : { column: column.value, range: DEFAULT_DOT_RANGE };\n const domain = [Infinity, -Infinity];\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < domain[0]) {\n domain[0] = value;\n }\n if (value > domain[1]) {\n domain[1] = value;\n }\n });\n return { columnName: column, domain, range: [mapping.range.min, mapping.range.max] };\n }\n return isContinuousDataMapping(dotSize) ? defaultDotSize : dotSize ?? defaultDotSize;\n}\n\nfunction getContinuousColor<T extends string>(\n columnKey: string,\n value: AestheticMappingContinuous,\n groupingColumns: ColumnNameSchema[],\n dataByColumns: PlotDataAndSettings['data']['byColumns']\n): T \| ContinuousDataMappingForGraph<T> {\n const column = groupingColumns.find(groupingColumn => groupingColumn.value === columnKey);\n if (column) {\n console.log('column', column);\n console.log('value', value);\n const { range, palette, midPoint, log } = value;\n let {minValue, maxValue} = range ?? {};\n let inverted = false;\n \n const minValueMissed = minValue === null \|\| minValue === undefined;\n const maxValueMissed = maxValue === null \|\| maxValue === undefined;\n\n console.log('minValueMissed', minValueMissed);\n console.log('maxValueMissed', maxValueMissed);\n const bounds = [Infinity, -Infinity];\n if (minValueMissed \|\| maxValueMissed) {\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < bounds[0]) {\n bounds[0] = value;\n }\n if (value > bounds[1]) {\n bounds[1] = value;\n }\n });\n console.log('bounds', bounds);\n }\n if (minValueMissed && maxValueMissed) {\n minValue = bounds[0];\n maxValue = bounds[1];\n } else if (minValueMissed) {\n minValue = (maxValue as number) > bounds[0] ? bounds[0] : bounds[1];\n } else if (maxValueMissed) {\n maxValue = (minValue as number) < bounds[1] ? bounds[1] : bounds[0];\n }\n console.log('minValue', minValue, 'maxValue', maxValue);\n if (minValue !== null && minValue !== undefined && maxValue !== null && maxValue !== undefined && minValue > maxValue) {\n inverted = true;\n [minValue, maxValue] = [maxValue, minValue];\n }\n const domain = [minValue as number, maxValue as number];\n if (midPoint !== null && midPoint !== undefined) {\n const maxDistance = Math.max(Math.abs(midPoint - (minValue as number)), Math.abs(midPoint - (maxValue as number)));\n domain[0] = midPoint - maxDistance;\n domain[1] = midPoint + maxDistance;\n }\n\n const colors = [...PALETTE_MAP[palette].colors];\n if (inverted) {\n colors.reverse();\n }\n return {\n columnName: column,\n domain,\n range: colors,\n type: log ? 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