npm - @milaboratories/graph-maker - Versions diffs - 1.1.140 → 1.1.142 - Mend

@milaboratories/graph-maker 1.1.140 → 1.1.142

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Files changed (115) hide show

package/dist/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.js CHANGED Viewed

@@ -1,44 +1,44 @@
 import { isContinuousDataMapping as g } from "../../constantsCommon.js";
-import { AMINOACID_COLOR_MAPPING as w, NUCLEOTIDE_COLOR_MAPPING as A, PALETTE_MAP as F, DEFAULT_BLACK as y, DEFAULT_CONTINUOUS_PALETTE as I, DEFAULT_DOT_SHAPE as _ } from "../../constantsAesthetic.js";
-import { DEFAULT_DOT_SIZE as b, DEFAULT_DOT_RANGE as P, isAestheticMappingContinuous as V, createContinuousMappingFromPalette as N } from "../../dataBindAes.js";
-function x(t) {
+import { AMINOACID_COLOR_MAPPING as L, NUCLEOTIDE_COLOR_MAPPING as A, PALETTE_MAP as b, DEFAULT_BLACK as C, DEFAULT_CONTINUOUS_PALETTE as F, DEFAULT_DOT_SHAPE as I } from "../../constantsAesthetic.js";
+import { DEFAULT_DOT_SIZE as _, DEFAULT_DOT_RANGE as P, isAestheticMappingContinuous as V, createContinuousMappingFromPalette as N } from "../../dataBindAes.js";
+function x(r) {
   const l = [];
-  if (t.overall.data.testMethod && t.overall.validity.testMethod && l.push({
+  if (r.overall.data.testMethod && r.overall.validity.testMethod && l.push({
     type: "stat",
     statType: "overall",
-    testMethod: t.overall.data.testMethod
-  }), t.referenceGroup.data.testMethod && t.referenceGroup.validity.testMethod && t.referenceGroup.validity.referenceGroup) {
+    testMethod: r.overall.data.testMethod
+  }), r.referenceGroup.data.testMethod && r.referenceGroup.validity.testMethod && r.referenceGroup.validity.referenceGroup) {
     const p = {
       type: "stat",
       statType: "referenceGroup",
-      testMethod: t.referenceGroup.data.testMethod,
-      referenceGroup: t.referenceGroup.data.referenceGroup,
-      format: t.referenceGroup.data.format,
-      ns: t.referenceGroup.data.ns
+      testMethod: r.referenceGroup.data.testMethod,
+      referenceGroup: r.referenceGroup.data.referenceGroup,
+      format: r.referenceGroup.data.format,
+      ns: r.referenceGroup.data.ns
     };
-    t.referenceGroup.data.correctionMethod !== "none" && (p.correctionMethod = t.referenceGroup.data.correctionMethod), l.push(p);
+    r.referenceGroup.data.correctionMethod !== "none" && (p.correctionMethod = r.referenceGroup.data.correctionMethod), l.push(p);
   }
-  if (t.pairwise.data.testMethod && t.pairwise.validity.testMethod) {
+  if (r.pairwise.data.testMethod && r.pairwise.validity.testMethod) {
     const p = {
       type: "stat",
       statType: "pairwise",
-      testMethod: t.pairwise.data.testMethod,
-      format: t.pairwise.data.format,
-      ns: t.pairwise.data.ns
+      testMethod: r.pairwise.data.testMethod,
+      format: r.pairwise.data.format,
+      ns: r.pairwise.data.ns
     };
-    t.referenceGroup.data.correctionMethod !== "none" && (p.correctionMethod = t.referenceGroup.data.correctionMethod), l.push(p);
+    r.referenceGroup.data.correctionMethod !== "none" && (p.correctionMethod = r.referenceGroup.data.correctionMethod), l.push(p);
   }
   return l;
 }
-function j(t, l, p, u, d) {
-  const o = [], r = u.components.primaryGrouping.selectorStates.length > 0, c = u.components.secondaryGrouping.selectorStates.length > 0;
-  function i(n, f = !1) {
-    return n === null ? c ? { type: "secondaryGrouping" } : r && !f ? { type: "primaryGrouping" } : { type: "secondaryGrouping" } : n;
+function B(r, l, p, u, d) {
+  const o = [], n = u.components.primaryGrouping.selectorStates.length > 0, c = u.components.secondaryGrouping.selectorStates.length > 0;
+  function i(t, f = !1) {
+    return t === null ? c ? { type: "secondaryGrouping" } : n && !f ? { type: "primaryGrouping" } : { type: "secondaryGrouping" } : t;
   }
-  return t.forEach((n) => {
+  return r.forEach((t) => {
     var f;
-    if (n === "box") {
-      const e = l[n];
+    if (t === "box") {
+      const e = l[t];
       o.push({
         type: "box",
         aes: {
@@ -51,8 +51,8 @@ function j(t, l, p, u, d) {
         }
       });
     }
-    if (n === "binnedDots") {
-      const e = l[n];
+    if (t === "binnedDots") {
+      const e = l[t];
       o.push({
         type: "binnedDots",
         aes: {
@@ -63,8 +63,8 @@ function j(t, l, p, u, d) {
         }
       });
     }
-    if (n === "jitteredDots") {
-      const e = l[n];
+    if (t === "jitteredDots") {
+      const e = l[t];
       o.push({
         type: "dot",
         aes: {
@@ -76,8 +76,8 @@ function j(t, l, p, u, d) {
         }
       });
     }
-    if (n === "violin") {
-      const e = l[n];
+    if (t === "violin") {
+      const e = l[t];
       o.push({
         type: "violin",
         stat: {
@@ -94,8 +94,8 @@ function j(t, l, p, u, d) {
         }
       });
     }
-    if (n === "bar") {
-      const e = l[n];
+    if (t === "bar") {
+      const e = l[t];
       o.push({
         type: "bar",
         height: e.height,
@@ -106,8 +106,8 @@ function j(t, l, p, u, d) {
         }
       });
     }
-    if (n === "stackedBar") {
-      const e = l[n];
+    if (t === "stackedBar") {
+      const e = l[t];
       o.push({
         type: "stackedBar",
         normalize: e.normalize,
@@ -118,8 +118,22 @@ function j(t, l, p, u, d) {
         }
       });
     }
-    if (n === "line") {
-      const e = l[n];
+    if (t === "stackedArea") {
+      const e = l[t];
+      o.push({
+        type: "stackedArea",
+        normalize: e.normalize,
+        showBars: e.showBars,
+        aes: {
+          fillColor: i(e.fillColor),
+          lineColor: i(e.lineColor),
+          barsOpacity: e.barsOpacity,
+          areaOpacity: e.areaOpacity
+        }
+      });
+    }
+    if (t === "line") {
+      const e = l[t];
       o.push({
         type: "line",
         pointsValues: e.pointsValues,
@@ -132,8 +146,8 @@ function j(t, l, p, u, d) {
         }
       });
     }
-    if (n === "errorbar") {
-      const e = l[n];
+    if (t === "errorbar") {
+      const e = l[t];
       o.push({
         type: "errorbar",
         pointsValues: e.pointsValues,
@@ -146,8 +160,8 @@ function j(t, l, p, u, d) {
         }
       });
     }
-    if (n === "sina") {
-      const e = l[n];
+    if (t === "sina") {
+      const e = l[t];
       o.push({
         type: "sina",
         aes: {
@@ -157,71 +171,71 @@ function j(t, l, p, u, d) {
         }
       });
     }
-    if (n === "logo" && c) {
-      const e = l[n], m = ((f = d.getSourceInfo(u.components.secondaryGrouping.selectorStates[0].selectedSource).spec.domain) == null ? void 0 : f["pl7.app/alphabet"]) === "aminoacid";
+    if (t === "logo" && c) {
+      const e = l[t], m = ((f = d.getSourceInfo(u.components.secondaryGrouping.selectorStates[0].selectedSource).spec.domain) == null ? void 0 : f["pl7.app/alphabet"]) === "aminoacid";
       o.push({
         type: "logo",
         normalize: e.normalize,
         aes: {
           opacity: e.opacity,
-          dotFill: m ? w : A
+          dotFill: m ? L : A
         }
       });
     }
-  }), r && !c && o.push(...x(p)), o;
+  }), n && !c && o.push(...x(p)), o;
 }
-function U(t, l, p, u) {
-  if (t) {
-    const d = g(l) ? l : { column: t.value, range: P }, o = [1 / 0, -1 / 0];
-    return p.values[t.value].forEach((r) => {
-      const c = Number(r);
+function z(r, l, p, u) {
+  if (r) {
+    const d = g(l) ? l : { column: r.value, range: P }, o = [1 / 0, -1 / 0];
+    return p.values[r.value].forEach((n) => {
+      const c = Number(n);
       c < o[0] && (o[0] = c), c > o[1] && (o[1] = c);
-    }), { columnName: t, domain: o, range: [d.range.min, d.range.max] };
+    }), { columnName: r, domain: o, range: [d.range.min, d.range.max] };
   }
   return g(l) ? u : l ?? u;
 }
-function D(t, l, p, u) {
-  const d = p.find((r) => r.value === t);
+function w(r, l, p, u) {
+  const d = p.find((n) => n.value === r);
   let o = [1 / 0, -1 / 0];
   if (d) {
-    const { range: r, palette: c, midPoint: i, log: n } = l, f = (r == null ? void 0 : r.minValue) === null || (r == null ? void 0 : r.minValue) === void 0, e = (r == null ? void 0 : r.maxValue) === null || (r == null ? void 0 : r.maxValue) === void 0;
+    const { range: n, palette: c, midPoint: i, log: t } = l, f = (n == null ? void 0 : n.minValue) === null || (n == null ? void 0 : n.minValue) === void 0, e = (n == null ? void 0 : n.maxValue) === null || (n == null ? void 0 : n.maxValue) === void 0;
     if ((f || e) && u.values[d.value].forEach((h) => {
       const m = Number(h);
       f && m < o[0] && (o[0] = m), e && m > o[1] && (o[1] = m);
-    }), f || (o[0] = r == null ? void 0 : r.minValue), e || (o[1] = r == null ? void 0 : r.maxValue), i != null) {
+    }), f || (o[0] = n == null ? void 0 : n.minValue), e || (o[1] = n == null ? void 0 : n.maxValue), i != null) {
       const h = Math.max(Math.abs(i - o[0]), Math.abs(i - o[1]));
       o[0] = i - h, o[1] = i + h;
     }
     return {
       columnName: d,
       domain: o,
-      range: F[c].colors,
-      type: n ? "log" : "linear"
+      range: b[c].colors,
+      type: t ? "log" : "linear"
     };
   }
-  return y;
+  return C;
 }
-function k(t, l, p, u, d, o, r = [], c = b) {
-  var C, M;
+function R(r, l, p, u, d, o, n = [], c = _) {
+  var y, M;
   const i = [];
-  function n(a, s, E, G = !1) {
+  function t(a, s, D, G = !1) {
     var v;
     if (s.length) {
-      const T = s.length ? (v = o.getSourceInfo(s[0])) == null ? void 0 : v.type : void 0, L = T === "String" || !G ? { type: "grouping", value: s[0] } : D(s[0], N(I), r, p), O = d[s[0]];
-      return a === null || T === "String" || !G || !V(O) ? L : D(s[0], O, r, p);
+      const O = s.length ? (v = o.getSourceInfo(s[0])) == null ? void 0 : v.type : void 0, E = O === "String" || !G ? { type: "grouping", value: s[0] } : w(s[0], N(F), n, p), T = d[s[0]];
+      return a === null || O === "String" || !G || !V(T) ? E : w(s[0], T, n, p);
     }
-    return typeof a == "object" ? E : a;
+    return typeof a == "object" ? D : a;
   }
-  const f = u.components.grouping.selectorStates.map((a) => a.selectedSource), e = ((C = u.components.shape) == null ? void 0 : C.selectorStates.map((a) => a.selectedSource)) ?? [], h = (M = u.components.size) == null ? void 0 : M.selectorStates.map((a) => a.selectedSource)[0], m = h ? r.find((a) => a.value === h) : void 0;
-  return t.forEach((a) => {
+  const f = u.components.grouping.selectorStates.map((a) => a.selectedSource), e = ((y = u.components.shape) == null ? void 0 : y.selectorStates.map((a) => a.selectedSource)) ?? [], h = (M = u.components.size) == null ? void 0 : M.selectorStates.map((a) => a.selectedSource)[0], m = h ? n.find((a) => a.value === h) : void 0;
+  return r.forEach((a) => {
     if (a === "dots") {
       const s = l[a];
       i.push({
         type: "dots",
         aes: {
-          dotFill: n(s.dotFill, f, y, !0),
-          dotShape: n(s.dotShape, e, _),
-          dotSize: U(m, s.dotSize, p, c)
+          dotFill: t(s.dotFill, f, C, !0),
+          dotShape: t(s.dotShape, e, I),
+          dotSize: z(m, s.dotSize, p, c)
         }
       });
     }
@@ -231,15 +245,15 @@ function k(t, l, p, u, d, o, r = [], c = b) {
         type: "curve",
         smoothing: s.smoothing,
         aes: {
-          lineColor: n(s.lineColor, f, y, !0)
+          lineColor: t(s.lineColor, f, C, !0)
         }
       });
     }
   }), i;
 }
 export {
-  j as getDiscreteLayersSettings,
-  k as getScatterplotLayersSettings,
+  B as getDiscreteLayersSettings,
+  R as getScatterplotLayersSettings,
   x as getStatLayers
 };
 //# sourceMappingURL=getLayersDataFromForms.js.map

package/dist/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"getLayersDataFromForms.js","sources":["../../../../src/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.ts"],"sourcesContent":["import {\n ColorAes,\n getDefaultLayersSettings,\n NumberRange,\n LayersSettings,\n MappingLink,\n DiscreteStatisticsState,\n ColumnNameSchema,\n ContinuousDataMappingSize,\n isContinuousDataMapping,\n ContinuousDataMappingForGraph\n} from '../../constantsCommon';\nimport {\n Layer,\n ReactiveState\n} from '../../types';\nimport {\n DiscreteUIState, InputGuide,\n InputState,\n PlotDataAndSettings,\n ScatterplotUIState\n} from '@milaboratories/pf-plots';\nimport { DotShape, LineType } from '../../components/AesSettings/types';\nimport {\n AMINOACID_COLOR_MAPPING,\n DEFAULT_BLACK,\n DEFAULT_CONTINUOUS_PALETTE,\n DEFAULT_DOT_SHAPE, NUCLEOTIDE_COLOR_MAPPING,\n PALETTE_MAP\n} from '../../constantsAesthetic';\nimport {\n AestheticMappingContinuous, createContinuousMappingFromPalette,\n DEFAULT_DOT_RANGE,\n DEFAULT_DOT_SIZE\n} from '../../dataBindAes';\nimport { ScatterplotSettings } from '@milaboratories/miplots4';\nimport { isAestheticMappingContinuous } from '../../dataBindAes';\n\nexport function getStatLayers(statisticsSettings: DiscreteStatisticsState) {\n const layers: ChartLayerSettings[] = [];\n if (\n statisticsSettings.overall.data.testMethod &&\n statisticsSettings.overall.validity.testMethod\n ) {\n layers.push({\n type: 'stat',\n statType: 'overall',\n testMethod: statisticsSettings.overall.data.testMethod\n });\n }\n if (\n statisticsSettings.referenceGroup.data.testMethod &&\n statisticsSettings.referenceGroup.validity.testMethod &&\n statisticsSettings.referenceGroup.validity.referenceGroup\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'referenceGroup',\n testMethod: statisticsSettings.referenceGroup.data.testMethod,\n referenceGroup: statisticsSettings.referenceGroup.data.referenceGroup,\n format: statisticsSettings.referenceGroup.data.format,\n ns: statisticsSettings.referenceGroup.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n if (\n statisticsSettings.pairwise.data.testMethod &&\n statisticsSettings.pairwise.validity.testMethod\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'pairwise',\n testMethod: statisticsSettings.pairwise.data.testMethod,\n format: statisticsSettings.pairwise.data.format,\n ns: statisticsSettings.pairwise.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n return layers;\n}\n\nexport function getDiscreteLayersSettings(\n layers: Layer[],\n layerSettings: LayersSettings,\n statisticsSettings: DiscreteStatisticsState,\n optionsState: DiscreteUIState,\n inputGuide: InputGuide<InputState>\n): ChartLayerSettings[] {\n const result: ChartLayerSettings[] = [];\n const hasPrimaryGrouping =\n optionsState.components.primaryGrouping.selectorStates.length > 0;\n const hasSecondaryGrouping =\n optionsState.components.secondaryGrouping.selectorStates.length > 0;\n // If user didn't touch layers settings, some aes that can be mapped to groupings has 'null' value - we set them to secondary or primary grouping if available\n // for 'line', 'errorbar' layer it isn't possible to set primary grouping as a color aes\n function useDefaultColor(\n value: ColorAes \| null,\n onlySecondaryAvailable = false\n ) {\n if (value === null) {\n if (hasSecondaryGrouping) {\n return { type: 'secondaryGrouping' };\n }\n if (hasPrimaryGrouping && !onlySecondaryAvailable) {\n return { type: 'primaryGrouping' };\n }\n return { type: 'secondaryGrouping' };\n }\n return value;\n }\n\n layers.forEach((layer) => {\n if (layer === 'box') {\n const settings = layerSettings[layer];\n result.push({\n type: 'box',\n aes: {\n showOutliers: settings.showOutliers,\n dotShape: settings.dotShape,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'binnedDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'binnedDots',\n aes: {\n showOutliers: settings.showOutliers,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'jitteredDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'dot',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape,\n lineColor: settings.lineColor,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'violin') {\n const settings = layerSettings[layer];\n result.push({\n type: 'violin',\n stat: {\n trim: settings.trim\n },\n aes: {\n showQuartiles: settings.showQuartiles,\n medianLineStyle: settings.medianLineStyle,\n quartilesLineStyle: settings.quartilesLineStyle,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'bar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'bar',\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'stackedBar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedBar',\n normalize: settings.normalize,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'line') {\n const settings = layerSettings[layer];\n result.push({\n type: 'line',\n pointsValues: settings.pointsValues,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n lineShape: settings.lineType,\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'errorbar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'errorbar',\n pointsValues: settings.pointsValues,\n interval: settings.interval,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'sina') {\n const settings = layerSettings[layer];\n result.push({\n type: 'sina',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape\n }\n });\n }\n if (layer === 'logo' && hasSecondaryGrouping) {\n const settings = layerSettings[layer];\n const secondaryGroupingInfo = inputGuide.getSourceInfo(optionsState.components.secondaryGrouping.selectorStates[0].selectedSource);\n const isProtein = secondaryGroupingInfo.spec.domain?.['pl7.app/alphabet'] === 'aminoacid';\n result.push({\n type: 'logo',\n normalize: settings.normalize,\n aes: {\n opacity: settings.opacity,\n dotFill: isProtein ? AMINOACID_COLOR_MAPPING : NUCLEOTIDE_COLOR_MAPPING\n }\n });\n }\n });\n if (hasPrimaryGrouping && !hasSecondaryGrouping) {\n result.push(...getStatLayers(statisticsSettings));\n }\n return result;\n}\n\nfunction getDotSize(\n column: ColumnNameSchema \| undefined,\n dotSize: ContinuousDataMappingSize \| number \| null,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n defaultDotSize: number\n): number \| { columnName: ColumnNameSchema, domain: number[], range: number[] } {\n if (column) {\n const mapping = isContinuousDataMapping(dotSize) ? dotSize : { column: column.value, range: DEFAULT_DOT_RANGE };\n const domain = [Infinity, -Infinity];\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < domain[0]) {\n domain[0] = value;\n }\n if (value > domain[1]) {\n domain[1] = value;\n }\n });\n return { columnName: column, domain, range: [mapping.range.min, mapping.range.max] };\n }\n return isContinuousDataMapping(dotSize) ? defaultDotSize : dotSize ?? defaultDotSize;\n}\n\nfunction getContinuousColor<T extends string>(\n columnKey: string,\n value: AestheticMappingContinuous,\n groupingColumns: ColumnNameSchema[],\n dataByColumns: PlotDataAndSettings['data']['byColumns']\n): T \| ContinuousDataMappingForGraph<T> {\n const column = groupingColumns.find(groupingColumn => groupingColumn.value === columnKey);\n let domain = [Infinity, -Infinity];\n if (column) {\n const { range, palette, midPoint, log } = value;\n const minValueMissed = range?.minValue === null \|\| range?.minValue === undefined;\n const maxValueMissed = range?.maxValue === null \|\| range?.maxValue === undefined;\n if (minValueMissed \|\| maxValueMissed) {\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (minValueMissed && value < domain[0]) {\n domain[0] = value;\n }\n if (maxValueMissed && value > domain[1]) {\n domain[1] = value;\n }\n });\n }\n if (!minValueMissed) {\n domain[0] = range?.minValue as number;\n }\n if (!maxValueMissed) {\n domain[1] = range?.maxValue as number;\n }\n if (midPoint !== null && midPoint !== undefined) {\n const maxDistance = Math.max(Math.abs(midPoint - domain[0]), Math.abs(midPoint - domain[1]));\n domain[0] = midPoint - maxDistance;\n domain[1] = midPoint + maxDistance;\n }\n\n return {\n columnName: column,\n domain,\n range: PALETTE_MAP[palette].colors,\n type: log ? 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1	+ {"version":3,"file":"getLayersDataFromForms.js","sources":["../../../../src/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.ts"],"sourcesContent":["import {\n ColorAes,\n getDefaultLayersSettings,\n NumberRange,\n LayersSettings,\n MappingLink,\n DiscreteStatisticsState,\n ColumnNameSchema,\n ContinuousDataMappingSize,\n isContinuousDataMapping,\n ContinuousDataMappingForGraph\n} from '../../constantsCommon';\nimport {\n Layer,\n ReactiveState\n} from '../../types';\nimport {\n DiscreteUIState, InputGuide,\n InputState,\n PlotDataAndSettings,\n ScatterplotUIState\n} from '@milaboratories/pf-plots';\nimport { DotShape, LineType } from '../../components/AesSettings/types';\nimport {\n AMINOACID_COLOR_MAPPING,\n DEFAULT_BLACK,\n DEFAULT_CONTINUOUS_PALETTE,\n DEFAULT_DOT_SHAPE, NUCLEOTIDE_COLOR_MAPPING,\n PALETTE_MAP\n} from '../../constantsAesthetic';\nimport {\n AestheticMappingContinuous, createContinuousMappingFromPalette,\n DEFAULT_DOT_RANGE,\n DEFAULT_DOT_SIZE\n} from '../../dataBindAes';\nimport { ScatterplotSettings } from '@milaboratories/miplots4';\nimport { isAestheticMappingContinuous } from '../../dataBindAes';\n\nexport function getStatLayers(statisticsSettings: DiscreteStatisticsState) {\n const layers: ChartLayerSettings[] = [];\n if (\n statisticsSettings.overall.data.testMethod &&\n statisticsSettings.overall.validity.testMethod\n ) {\n layers.push({\n type: 'stat',\n statType: 'overall',\n testMethod: statisticsSettings.overall.data.testMethod\n });\n }\n if (\n statisticsSettings.referenceGroup.data.testMethod &&\n statisticsSettings.referenceGroup.validity.testMethod &&\n statisticsSettings.referenceGroup.validity.referenceGroup\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'referenceGroup',\n testMethod: statisticsSettings.referenceGroup.data.testMethod,\n referenceGroup: statisticsSettings.referenceGroup.data.referenceGroup,\n format: statisticsSettings.referenceGroup.data.format,\n ns: statisticsSettings.referenceGroup.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n if (\n statisticsSettings.pairwise.data.testMethod &&\n statisticsSettings.pairwise.validity.testMethod\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'pairwise',\n testMethod: statisticsSettings.pairwise.data.testMethod,\n format: statisticsSettings.pairwise.data.format,\n ns: statisticsSettings.pairwise.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n return layers;\n}\n\nexport function getDiscreteLayersSettings(\n layers: Layer[],\n layerSettings: LayersSettings,\n statisticsSettings: DiscreteStatisticsState,\n optionsState: DiscreteUIState,\n inputGuide: InputGuide<InputState>\n): ChartLayerSettings[] {\n const result: ChartLayerSettings[] = [];\n const hasPrimaryGrouping =\n optionsState.components.primaryGrouping.selectorStates.length > 0;\n const hasSecondaryGrouping =\n optionsState.components.secondaryGrouping.selectorStates.length > 0;\n // If user didn't touch layers settings, some aes that can be mapped to groupings has 'null' value - 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package/dist/GraphMaker/utils/loadDefaultSources.js CHANGED Viewed

@@ -1,6 +1,7 @@
-import { AxisId as F } from "../../node_modules/@milaboratories/pf-plots/dist/index.js";
+import "../../node_modules/@milaboratories/pf-plots/dist/index.js";
 import { toRaw as v } from "vue";
 import { SUBSET_FILTER_KEY as h } from "../constantsCommon.js";
+import { AxisId as F } from "../../node_modules/@milaboratories/pf-plots/dist/spec.js";
 function w(n, r) {
   if (typeof n > "u")
     return !0;
@@ -10,7 +11,7 @@ function w(n, r) {
 function A(n, r, d, l) {
   return (r == null ? void 0 : r[h]) === "true" ? "subset" : l !== void 0 ? "range" : d !== void 0 || n === "Int" || n === "String" ? "equals" : "range";
 }
-async function k(n, r, d = !0) {
+async function B(n, r, d = !0) {
   const l = [], V = r.filter(({ selectedSource: e }) => "kind" in e && e.kind === "PColumn"), T = r.filter(({ selectedSource: e }) => !("kind" in e && e.kind === "PColumn")), C = [];
   for (const { inputName: e, filterType: f, selectedSource: S, selectedFilterValue: u, selectedFilterRange: y, fixedAxes: a } of V) {
     const { name: p, valueType: m, annotations: c, domain: s } = S, o = await n.pFrameProvider.findColumnBy(p, m, v(c), v(s)), x = e === "filters" || e === "tabBy" || e === "highlight";
@@ -69,6 +70,6 @@ async function k(n, r, d = !0) {
   return l;
 }
 export {
-  k as loadDefaultSources
+  B as loadDefaultSources
 };
 //# sourceMappingURL=loadDefaultSources.js.map

package/dist/GraphMaker/utils/loadDefaultSources.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"loadDefaultSources.js","sources":["../../../src/GraphMaker/utils/loadDefaultSources.ts"],"sourcesContent":["import {\n AxisId,\n ChartType,\n ColumnId,\n DemoDataStore,\n InputNamesByChartType,\n SelectorStateFilter, SelectorStateSimple\n} from '@milaboratories/pf-plots';\nimport { PredefinedGraphOption } from '../types';\nimport { AxisSpec, PColumnSpec, ValueType } from '@platforma-sdk/model';\nimport { toRaw } from 'vue';\nimport { SUBSET_FILTER_KEY } from '../constantsCommon';\n\ntype LoadedDefaultOptions<T extends ChartType> = {\n inputName: InputNamesByChartType[T],\n selectedSource: string,\n fixedAxes: SelectorStateSimple['fixedAxes'],\n filterType?: SelectorStateFilter['type']\n selectedFilterRange?: SelectorStateFilter['selectedFilterRange']\n selectedFilterValue?: SelectorStateFilter['selectedFilterValue']\n}\n\nfunction domainIsCompatible(domain?:Record<string, string>, otherDomain?:Record<string, string>):boolean {\n if (typeof domain === 'undefined') {\n return true;\n }\n const keys = Object.keys(domain);\n if (typeof otherDomain === 'undefined') {\n return keys.length === 0;\n }\n return keys.every((key) => otherDomain[key]);\n}\n\nfunction getDefaultFilterType(\n valueType:ValueType,\n annotations?:Record<string, string>,\n selectedFilterValue?: SelectorStateFilter['selectedFilterValue'],\n selectedFilterRange?: Partial<SelectorStateFilter['selectedFilterRange']>\n):SelectorStateFilter['type'] {\n if (annotations?.[SUBSET_FILTER_KEY] === 'true') {\n return 'subset';\n }\n if (selectedFilterRange !== undefined) {\n return 'range';\n }\n if (selectedFilterValue !== undefined) {\n return 'equals';\n }\n if (valueType === 'Int' \|\| valueType === 'String') {\n return 'equals';\n }\n return 'range';\n}\nexport async function loadDefaultSources (\n dataStore:DemoDataStore,\n defaultOptions:PredefinedGraphOption<ChartType>[],\n considerAxisDomains = true,\n):Promise<LoadedDefaultOptions<ChartType>[]> {\n const result:LoadedDefaultOptions<ChartType>[] = []\n const defaultColumnStates = defaultOptions.filter(({ selectedSource }) => 'kind' in selectedSource && selectedSource.kind === 'PColumn');\n const defaultAxisStates = defaultOptions.filter(({ selectedSource }) => !('kind' in selectedSource && selectedSource.kind === 'PColumn'));\n\n const allowedAxisSpecs = [] as {spec: AxisSpec, parentColumn:ColumnId}[]; // if default options contain axes - they should be in other default columns\n\n for (const { inputName, filterType, selectedSource, selectedFilterValue, selectedFilterRange, fixedAxes } of defaultColumnStates) {\n const { name, valueType, annotations, domain } = selectedSource as PColumnSpec;\n const columnId = await dataStore.pFrameProvider.findColumnBy(name, valueType, toRaw(annotations), toRaw(domain));\n const isFilter = inputName === 'filters' \|\| inputName === 'tabBy' \|\| inputName === 'highlight';\n if (columnId) {\n const spec = await dataStore.pFrameProvider.getColumnSpecById(columnId);\n const fixedAxesFilled:SelectorStateSimple['fixedAxes'] = spec && fixedAxes ? fixedAxes.map((el) => ({axisIdx: el.axisIdx, axisValue: el.axisValue, axisSource: AxisId.fromAxisSpec(spec?.axesSpec[el.axisIdx]).toCanonicalString()})) : [];\n if (!isFilter) {\n result.push({ inputName, selectedSource: columnId.toCanonicalString(), fixedAxes: fixedAxesFilled});\n } else {\n const defaultFilterType = filterType ?? getDefaultFilterType(valueType, spec?.annotations, selectedFilterValue, selectedFilterRange);\n const defaultSelectedFilterValue = defaultFilterType === 'equals' && typeof selectedFilterValue === 'undefined'\n ? (await dataStore.pFrameProvider.getColumnUniqueValues(columnId, 1)).values[0]\n : selectedFilterValue;\n const defaultFilterRange = {min: undefined, max: undefined, ...selectedFilterRange};\n result.push({\n inputName,\n filterType: defaultFilterType,\n selectedSource: columnId.toCanonicalString(),\n selectedFilterValue: defaultSelectedFilterValue,\n selectedFilterRange: defaultFilterRange as SelectorStateFilter['selectedFilterRange'],\n fixedAxes: fixedAxesFilled\n });\n }\n\n allowedAxisSpecs.push(...spec?.axesSpec.map((spec) => ({spec, parentColumn:columnId})) ?? 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1	+ {"version":3,"file":"loadDefaultSources.js","sources":["../../../src/GraphMaker/utils/loadDefaultSources.ts"],"sourcesContent":["import {\n AxisId,\n ChartType,\n ColumnId,\n DemoDataStore,\n InputNamesByChartType,\n SelectorStateFilter, SelectorStateSimple\n} from '@milaboratories/pf-plots';\nimport { PredefinedGraphOption } from '../types';\nimport { AxisSpec, PColumnSpec, ValueType } from '@platforma-sdk/model';\nimport { toRaw } from 'vue';\nimport { SUBSET_FILTER_KEY } from '../constantsCommon';\n\ntype LoadedDefaultOptions<T extends ChartType> = {\n inputName: InputNamesByChartType[T],\n selectedSource: string,\n fixedAxes: SelectorStateSimple['fixedAxes'],\n filterType?: SelectorStateFilter['type']\n selectedFilterRange?: SelectorStateFilter['selectedFilterRange']\n selectedFilterValue?: SelectorStateFilter['selectedFilterValue']\n}\n\nfunction domainIsCompatible(domain?:Record<string, string>, otherDomain?:Record<string, string>):boolean {\n if (typeof domain === 'undefined') {\n return true;\n }\n const keys = Object.keys(domain);\n if (typeof otherDomain === 'undefined') {\n return keys.length === 0;\n }\n return keys.every((key) => otherDomain[key]);\n}\n\nfunction getDefaultFilterType(\n valueType:ValueType,\n annotations?:Record<string, string>,\n selectedFilterValue?: SelectorStateFilter['selectedFilterValue'],\n selectedFilterRange?: Partial<SelectorStateFilter['selectedFilterRange']>\n):SelectorStateFilter['type'] {\n if (annotations?.[SUBSET_FILTER_KEY] === 'true') {\n return 'subset';\n }\n if (selectedFilterRange !== undefined) {\n return 'range';\n }\n if (selectedFilterValue !== undefined) {\n return 'equals';\n }\n if (valueType === 'Int' \|\| valueType === 'String') {\n return 'equals';\n }\n return 'range';\n}\nexport async function loadDefaultSources (\n dataStore:DemoDataStore,\n defaultOptions:PredefinedGraphOption<ChartType>[],\n considerAxisDomains = true,\n):Promise<LoadedDefaultOptions<ChartType>[]> {\n const result:LoadedDefaultOptions<ChartType>[] = []\n const defaultColumnStates = defaultOptions.filter(({ selectedSource }) => 'kind' in selectedSource && selectedSource.kind === 'PColumn');\n const defaultAxisStates = defaultOptions.filter(({ selectedSource }) => !('kind' in selectedSource && selectedSource.kind === 'PColumn'));\n\n const allowedAxisSpecs = [] as {spec: AxisSpec, parentColumn:ColumnId}[]; // if default options contain axes - they should be in other default columns\n\n for (const { inputName, filterType, selectedSource, selectedFilterValue, selectedFilterRange, fixedAxes } of defaultColumnStates) {\n const { name, valueType, annotations, domain } = selectedSource as PColumnSpec;\n const columnId = await dataStore.pFrameProvider.findColumnBy(name, valueType, toRaw(annotations), toRaw(domain));\n const isFilter = inputName === 'filters' \|\| inputName === 'tabBy' \|\| inputName === 'highlight';\n if (columnId) {\n const spec = await dataStore.pFrameProvider.getColumnSpecById(columnId);\n const fixedAxesFilled:SelectorStateSimple['fixedAxes'] = spec && fixedAxes ? fixedAxes.map((el) => ({axisIdx: el.axisIdx, axisValue: el.axisValue, axisSource: AxisId.fromAxisSpec(spec?.axesSpec[el.axisIdx]).toCanonicalString()})) : [];\n if (!isFilter) {\n result.push({ inputName, selectedSource: columnId.toCanonicalString(), fixedAxes: fixedAxesFilled});\n } else {\n const defaultFilterType = filterType ?? getDefaultFilterType(valueType, spec?.annotations, selectedFilterValue, selectedFilterRange);\n const defaultSelectedFilterValue = defaultFilterType === 'equals' && typeof selectedFilterValue === 'undefined'\n ? 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package/dist/_virtual/_commonjsHelpers.js CHANGED Viewed

@@ -1,9 +1,7 @@
-var o = typeof globalThis < "u" ? globalThis : typeof window < "u" ? window : typeof global < "u" ? global : typeof self < "u" ? self : {};
-function l(e) {
-  return e && e.__esModule && Object.prototype.hasOwnProperty.call(e, "default") ? e.default : e;
+function e(t) {
+  return t && t.__esModule && Object.prototype.hasOwnProperty.call(t, "default") ? t.default : t;
 }
 export {
-  o as commonjsGlobal,
-  l as getDefaultExportFromCjs
+  e as getDefaultExportFromCjs
 };
 //# sourceMappingURL=_commonjsHelpers.js.map

package/dist/_virtual/_commonjsHelpers.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"_commonjsHelpers.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;;"}

package/dist/node_modules/@milaboratories/miplots4/dist/MiPlots.js CHANGED Viewed

@@ -7,7 +7,7 @@ import { ChartScatterplotUmap as f } from "./scatterplot-umap/index.js";
 import { ChartBubble as d } from "./bubble/index.js";
 import { DataFrame as s } from "./DataFrame.js";
 import { exhaustive as l } from "./utils/index.js";
-var C = Object.defineProperty, b = (o, t, r) => t in o ? C(o, t, { enumerable: !0, configurable: !0, writable: !0, value: r }) : o[t] = r, i = (o, t, r) => b(o, typeof t != "symbol" ? t + "" : t, r);
+var C = Object.defineProperty, w = (o, t, r) => t in o ? C(o, t, { enumerable: !0, configurable: !0, writable: !0, value: r }) : o[t] = r, i = (o, t, r) => w(o, typeof t != "symbol" ? t + "" : t, r);
 class h {
   constructor(t) {
     i(this, "node"), i(this, "chart"), this.chart = t;