@milaboratories/graph-maker 1.1.140 → 1.1.142

package/dist/GraphMaker/components/LassoControls/index.vue.js

@@ -24,8 +24,8 @@ import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/d3-hier
 import "../../../node_modules/@milaboratories/miplots4/dist/DataFrame.js";
 import "../../../node_modules/@milaboratories/miplots4/dist/common/useDataFrame.js";
 import "../../../node_modules/@milaboratories/miplots4/dist/utils/arrangeLegendParts.js";
-import "../../../node_modules/@milaboratories/miplots4/dist/common/ErrorBoundary.js";
 import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/d3-shape/src/curve/linear.js";
+import "../../../node_modules/@milaboratories/miplots4/dist/common/ErrorBoundary.js";
 import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/d3-shape/src/curve/basis.js";
 import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/@stdlib/stats-anova1/lib/main.js";
 import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/@stdlib/stats-ttest/lib/main.js";

package/dist/GraphMaker/constantsCommon.d.ts

@@ -191,6 +191,14 @@ export type LayersSettings = {
         opacity: number;
         normalize: boolean;
     };
+    stackedArea: {
+        fillColor: ColorAes | null;
+        lineColor: ColorAes;
+        barsOpacity: number;
+        areaOpacity: number;
+        normalize: boolean;
+        showBars: boolean;
+    };
     line: {
         pointsValues: 'mean' | 'median';
         lineColor: ColorAes | null;

package/dist/GraphMaker/constantsCommon.d.ts.map

@@ -1 +1 @@
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package/dist/GraphMaker/constantsCommon.js

@@ -1,28 +1,28 @@
-import { DEFAULT_DOT_SHAPE as i, DEFAULT_LINE_TYPE as d, DEFAULT_BLACK as u } from "./constantsAesthetic.js";
-import { DEFAULT_LINE_COLOR as s, DEFAULT_DOT_SIZE as K } from "./dataBindAes.js";
-import X from "./icons/BarAndErrorIcon.vue.js";
-import G from "./icons/BarAndLineIcon.vue.js";
-import Y from "./icons/BarIcon.vue.js";
-import W from "./icons/BinnedDotsIcon.vue.js";
-import J from "./icons/BoxplotAndBinnedIcon.vue.js";
-import q from "./icons/BoxplotAndJitterIcon.vue.js";
-import Q from "./icons/BoxplotIcon.vue.js";
-import N from "./icons/DendroIcon.vue.js";
-import k from "./icons/HeatmapIcon.vue.js";
-import Z from "./icons/JitteredDotsIcon.vue.js";
-import $ from "./icons/LineAndBinnedIcon.vue.js";
-import ee from "./icons/LineAndErrorbarIcon.vue.js";
+import { DEFAULT_DOT_SHAPE as s, DEFAULT_LINE_TYPE as d, DEFAULT_BLACK as u } from "./constantsAesthetic.js";
+import { DEFAULT_LINE_COLOR as i, DEFAULT_DOT_SIZE as X } from "./dataBindAes.js";
+import W from "./icons/BarAndErrorIcon.vue.js";
+import F from "./icons/BarAndLineIcon.vue.js";
+import G from "./icons/BarIcon.vue.js";
+import J from "./icons/BinnedDotsIcon.vue.js";
+import q from "./icons/BoxplotAndBinnedIcon.vue.js";
+import Q from "./icons/BoxplotAndJitterIcon.vue.js";
+import Z from "./icons/BoxplotIcon.vue.js";
+import Y from "./icons/DendroIcon.vue.js";
+import N from "./icons/HeatmapIcon.vue.js";
+import $ from "./icons/JitteredDotsIcon.vue.js";
+import ee from "./icons/LineAndBinnedIcon.vue.js";
+import oe from "./icons/LineAndErrorbarIcon.vue.js";
 import U from "./icons/LineAndJitterIcon.vue.js";
 import V from "./icons/LineIcon.vue.js";
-import oe from "./icons/LogoIcon.vue.js";
-import te from "./icons/ScatterplotIcon.vue.js";
-import re from "./icons/SinaIcon.vue.js";
-import ne from "./icons/StackedBarIcon.vue.js";
-import le from "./icons/ViolinAndBinnedIcon.vue.js";
-import ae from "./icons/ViolinAndJitterIcon.vue.js";
+import te from "./icons/LogoIcon.vue.js";
+import re from "./icons/ScatterplotIcon.vue.js";
+import ne from "./icons/SinaIcon.vue.js";
+import z from "./icons/StackedBarIcon.vue.js";
+import ae from "./icons/ViolinAndBinnedIcon.vue.js";
+import le from "./icons/ViolinAndJitterIcon.vue.js";
 import ie from "./icons/ViolinIcon.vue.js";
-const we = "pl7.app/graph/thresholds", Re = "pl7.app/graph/axis/lowerLimit", je = "pl7.app/graph/axis/upperLimit", Fe = "pl7.app/graph/axis/symmetricRange", Ge = "pl7.app/graph/palette", Ye = "pl7.app/axisNature", Ne = "pl7.app/isSubset";
-function ke(o, t) {
+const we = "pl7.app/graph/thresholds", ke = "pl7.app/graph/axis/lowerLimit", Re = "pl7.app/graph/axis/upperLimit", je = "pl7.app/graph/axis/symmetricRange", Fe = "pl7.app/graph/palette", Ge = "pl7.app/axisNature", Ye = "pl7.app/isSubset";
+function Ne(o, t) {
   return t === "discrete" ? o && se[o] ? o : "box" : t === "scatterplot" || t === "scatterplot-umap" ? o && de[o] ? o : "dots" : t === "dendro" ? "dendro" : o ?? "heatmap";
 }
 const se = {
@@ -38,6 +38,7 @@ const se = {
   bar_line: ["bar", "line"],
   bar_errorbar: ["bar", "errorbar"],
   stackedBar: ["stackedBar"],
+  stackedArea: ["stackedArea"],
   line: ["line"],
   line_jitteredDots: ["line", "jitteredDots"],
   line_binnedDots: ["line", "binnedDots"],
@@ -64,6 +65,7 @@ const se = {
   violin: "Violins",
   bar: "Bar",
   stackedBar: "Stacked Bar",
+  stackedArea: "Stacked Bar + Stream Area",
   line: "Line",
   errorbar: "Error Bar",
   sina: "Sina",
@@ -77,12 +79,12 @@ const se = {
   bubble: "Bubble plot"
 };
 function Xe(o, t) {
-  var a, l, n, c, p, m, f, b, _, h, E, T, A, L, g, D, S, I, M, x, v, C, y, B, H, O, P, w, R, j, F;
+  var l, a, n, c, p, m, f, b, _, h, A, E, T, L, g, D, S, I, M, x, v, C, y, B, H, O, P, w, k, R, j;
   if (o === "discrete") {
     const e = t;
     return {
       overall: {
-        data: { testMethod: ((l = (a = e == null ? void 0 : e.overall) == null ? void 0 : a.data) == null ? void 0 : l.testMethod) ?? null },
+        data: { testMethod: ((a = (l = e == null ? void 0 : e.overall) == null ? void 0 : l.data) == null ? void 0 : a.testMethod) ?? null },
         validity: { testMethod: ((c = (n = e == null ? void 0 : e.overall) == null ? void 0 : n.validity) == null ? void 0 : c.testMethod) ?? !0 }
       },
       referenceGroup: {
@@ -90,8 +92,8 @@ function Xe(o, t) {
           testMethod: ((m = (p = e == null ? void 0 : e.referenceGroup) == null ? void 0 : p.data) == null ? void 0 : m.testMethod) ?? null,
           referenceGroup: ((b = (f = e == null ? void 0 : e.referenceGroup) == null ? void 0 : f.data) == null ? void 0 : b.referenceGroup) ?? null,
           correctionMethod: ((h = (_ = e == null ? void 0 : e.referenceGroup) == null ? void 0 : _.data) == null ? void 0 : h.correctionMethod) ?? "Bonferroni",
-          format: ((T = (E = e == null ? void 0 : e.referenceGroup) == null ? void 0 : E.data) == null ? void 0 : T.format) ?? "significance",
-          ns: ((L = (A = e == null ? void 0 : e.referenceGroup) == null ? void 0 : A.data) == null ? void 0 : L.ns) ?? !1
+          format: ((E = (A = e == null ? void 0 : e.referenceGroup) == null ? void 0 : A.data) == null ? void 0 : E.format) ?? "significance",
+          ns: ((L = (T = e == null ? void 0 : e.referenceGroup) == null ? void 0 : T.data) == null ? void 0 : L.ns) ?? !1
         },
         validity: {
           testMethod: ((D = (g = e == null ? void 0 : e.referenceGroup) == null ? void 0 : g.validity) == null ? void 0 : D.testMethod) ?? !0,
@@ -112,9 +114,9 @@ function Xe(o, t) {
   const r = t;
   return {
     trend: {
-      on: ((R = r == null ? void 0 : r.trend) == null ? void 0 : R.on) ?? !1,
-      trim: ((j = r == null ? void 0 : r.trend) == null ? void 0 : j.trim) ?? !1,
-      showLegend: ((F = r == null ? void 0 : r.trend) == null ? void 0 : F.showLegend) ?? !0
+      on: ((k = r == null ? void 0 : r.trend) == null ? void 0 : k.on) ?? !1,
+      trim: ((R = r == null ? void 0 : r.trend) == null ? void 0 : R.trim) ?? !1,
+      showLegend: ((j = r == null ? void 0 : r.trend) == null ? void 0 : j.showLegend) ?? !0
     }
   };
 }
@@ -145,8 +147,8 @@ const ue = () => ({
   //dendro
   dendro: {
     dotFill: u,
-    dotShape: i,
-    dotSize: K,
+    dotShape: s,
+    dotSize: X,
     lineColor: u,
     mode: "normal",
     leavesMode: "normal",
@@ -179,8 +181,8 @@ const ue = () => ({
   box: {
     showOutliers: !0,
     fillColor: null,
-    lineColor: s,
-    dotShape: i,
+    lineColor: i,
+    dotShape: s,
     lineType: d,
     gapWidth: 0.2,
     opacity: 1,
@@ -193,20 +195,20 @@ const ue = () => ({
   },
   binnedDots: {
     fillColor: null,
-    lineColor: s,
+    lineColor: i,
     opacity: 1,
     showOutliers: !0
   },
   jitteredDots: {
     dotFill: null,
-    dotShape: i,
-    lineColor: s,
+    dotShape: s,
+    lineColor: i,
     opacity: 1,
     showOutliers: !0
   },
   violin: {
     fillColor: null,
-    lineColor: s,
+    lineColor: i,
     lineType: d,
     opacity: 1,
     trim: !1,
@@ -216,20 +218,28 @@ const ue = () => ({
   },
   bar: {
     fillColor: null,
-    lineColor: s,
+    lineColor: i,
     opacity: 1,
     height: "max"
   },
   stackedBar: {
     fillColor: null,
-    lineColor: s,
+    lineColor: i,
     opacity: 1,
     normalize: !1
   },
+  stackedArea: {
+    fillColor: null,
+    lineColor: i,
+    barsOpacity: 1,
+    areaOpacity: 0.7,
+    normalize: !1,
+    showBars: !0
+  },
   line: {
     pointsValues: "mean",
     lineColor: null,
-    dotShape: i,
+    dotShape: s,
     lineType: d,
     dotFill: null,
     opacity: 1
@@ -238,13 +248,13 @@ const ue = () => ({
     pointsValues: "mean",
     interval: "sd",
     lineColor: null,
-    dotShape: i,
+    dotShape: s,
     dotFill: null,
     opacity: 1
   },
   sina: {
     dotFill: null,
-    dotShape: i,
+    dotShape: s,
     opacity: 1,
     showOutliers: !0
   },
@@ -255,10 +265,10 @@ const ue = () => ({
 });
 function Qe(o) {
   const t = ue();
-  return Object.keys(t).reduce((a, l) => (Object.assign(
-    a[l],
-    (o == null ? void 0 : o[l]) ?? {}
-  ), a), t);
+  return Object.keys(t).reduce((l, a) => (Object.assign(
+    l[a],
+    (o == null ? void 0 : o[a]) ?? {}
+  ), l), t);
 }
 const ce = () => ({
   title: {
@@ -305,16 +315,16 @@ const ce = () => ({
     groupingStack: "vertical"
   }
 });
-function z(o) {
+function K(o) {
   return o === "full" || o === "none";
 }
 function Ze(o, t) {
-  var l;
+  var a;
   const r = ce();
   if (!t)
     return r;
-  function a(n) {
-    return !n || o === "heatmap" && !z(n) ? "full" : o !== "heatmap" && z(n) && n === "none" ? "empty" : n;
+  function l(n) {
+    return !n || o === "heatmap" && !K(n) ? "full" : o !== "heatmap" && K(n) && n === "none" ? "empty" : n;
   }
   return {
     title: {
@@ -336,38 +346,39 @@ function Ze(o, t) {
     other: {
       ...r.other,
       ...t.other,
-      frame: a((l = t.other) == null ? void 0 : l.frame)
+      frame: l((a = t.other) == null ? void 0 : a.frame)
     }
   };
 }
 const $e = {
-  box: Q,
-  box_binnedDots: J,
-  box_jitteredDots: q,
-  binnedDots: W,
-  jitteredDots: Z,
+  box: Z,
+  box_binnedDots: q,
+  box_jitteredDots: Q,
+  binnedDots: J,
+  jitteredDots: $,
   violin: ie,
-  violin_binnedDots: le,
-  violin_jitteredDots: ae,
-  bar: Y,
-  bar_line: G,
-  bar_errorbar: X,
-  stackedBar: ne,
+  violin_binnedDots: ae,
+  violin_jitteredDots: le,
+  bar: G,
+  bar_line: F,
+  bar_errorbar: W,
+  stackedBar: z,
+  stackedArea: z,
   line: V,
-  line_binnedDots: $,
+  line_binnedDots: ee,
   line_jitteredDots: U,
-  line_errorbar: ee,
-  errorbar: G,
-  sina: re,
-  logo: oe,
-  dots: te,
+  line_errorbar: oe,
+  errorbar: F,
+  sina: ne,
+  logo: te,
+  dots: re,
   curve: V,
   curve_dots: U,
-  heatmap: k,
-  heatmapClustered: N,
-  dendro: N,
-  bins: Y,
-  bubble: k
+  heatmap: N,
+  heatmapClustered: Y,
+  dendro: Y,
+  bins: G,
+  bubble: N
 }, eo = [
   { value: "ttest", text: "TTest" },
   { value: "anova", text: "ANOVA" },
@@ -384,35 +395,35 @@ const $e = {
 ], to = [
   { value: "pValue", text: "p-value" },
   { value: "significance", text: "significance" }
-], ro = 600, no = 350, lo = 400, ao = 250, io = 100;
+], ro = 600, no = 350, ao = 400, lo = 250, io = 100;
 export {
-  Ye as AXIS_NATURE_KEY,
+  Ge as AXIS_NATURE_KEY,
   no as DEFAULT_HEIGHT,
-  ao as DEFAULT_HEIGHT_SMALL,
+  lo as DEFAULT_HEIGHT_SMALL,
   ue as DEFAULT_LAYERS_SETTINGS,
   ro as DEFAULT_WIDTH,
-  lo as DEFAULT_WIDTH_SMALL,
+  ao as DEFAULT_WIDTH_SMALL,
   se as DISCRETE_TEMPLATES_MAP,
   to as FORMAT_P_VALUE_OPTIONS,
   Ve as HEATMAP_TEMPLATES_MAP,
   ze as HISTOGRAM_TEMPLATES_MAP,
   $e as LAYER_ICONS,
   Ke as LAYER_TITLES,
-  Re as LOWER_LIMIT_KEY,
+  ke as LOWER_LIMIT_KEY,
   io as MAX_SEARCH_OPTIONS_LIST_LENGTH,
-  Ge as PALETTE_KEY,
+  Fe as PALETTE_KEY,
   de as SCATTERPLOT_TEMPLATES_MAP,
   Ue as SCATTERPLOT_UMAP_TEMPLATES_MAP,
   oo as STAT_CORRECTION_METHOD,
   eo as STAT_TEST_METHOD,
-  Ne as SUBSET_FILTER_KEY,
-  Fe as SYMMETRIC_RANGE_KEY,
+  Ye as SUBSET_FILTER_KEY,
+  je as SYMMETRIC_RANGE_KEY,
   we as THRESHOLDS_KEY,
-  je as UPPER_LIMIT_KEY,
+  Re as UPPER_LIMIT_KEY,
   Ze as getInitialAxesSettings,
   Qe as getInitialLayersSettings,
   Xe as getInitialStatisticsState,
-  ke as getInitialTemplate,
+  Ne as getInitialTemplate,
   qe as isContinuousDataMapping,
   Je as isMappedAes,
   We as isNumberRange

package/dist/GraphMaker/constantsCommon.js.map

@@ -1 +1 @@
-{"version":3,"file":"constantsCommon.js","sources":["../../src/GraphMaker/constantsCommon.ts"],"sourcesContent":["import type { ChartType } from '@milaboratories/pf-plots';\nimport type { Component } from 'vue';\nimport {\n  DotShape,\n  LineType\n} from './components/AesSettings/types';\nimport {\n  DEFAULT_BLACK,\n  DEFAULT_DOT_SHAPE,\n  DEFAULT_LINE_TYPE\n} from './constantsAesthetic';\nimport { DEFAULT_DOT_SIZE, DEFAULT_LINE_COLOR } from './dataBindAes';\nimport BarAndErrorIcon from './icons/BarAndErrorIcon.vue';\nimport BarAndLineIcon from './icons/BarAndLineIcon.vue';\nimport BarIcon from './icons/BarIcon.vue';\nimport BinnedDotsIcon from './icons/BinnedDotsIcon.vue';\nimport BoxplotAndBinnedIcon from './icons/BoxplotAndBinnedIcon.vue';\nimport BoxplotAndJitterIcon from './icons/BoxplotAndJitterIcon.vue';\nimport BoxplotIcon from './icons/BoxplotIcon.vue';\nimport DendroIcon from './icons/DendroIcon.vue';\nimport HeatmapIcon from './icons/HeatmapIcon.vue';\nimport JitteredDotsIcon from './icons/JitteredDotsIcon.vue';\nimport LineAndBinnedIcon from './icons/LineAndBinnedIcon.vue';\nimport LineAndErrorbarIcon from './icons/LineAndErrorbarIcon.vue';\nimport LineAndJitterIcon from './icons/LineAndJitterIcon.vue';\nimport LineIcon from './icons/LineIcon.vue';\nimport LogoIcon from './icons/LogoIcon.vue';\nimport ScatterplotIcon from './icons/ScatterplotIcon.vue';\nimport SinaIcon from './icons/SinaIcon.vue';\nimport StackedBarIcon from './icons/StackedBarIcon.vue';\nimport ViolinAndBinnedIcon from './icons/ViolinAndBinnedIcon.vue';\nimport ViolinAndJitterIcon from './icons/ViolinAndJitterIcon.vue';\nimport ViolinIcon from './icons/ViolinIcon.vue';\nimport {\n  AxisTitleMode,\n  DeepPartial,\n  DiscreteLayer,\n  DiscreteLayersTemplate,\n  Frame,\n  HeatmapFrame, HeatmapLayer, HeatmapLayerTemplate, HistogramLayer, HistogramLayerTemplate,\n  LabelsPosition,\n  LabelsRotation,\n  Layer,\n  LayersTemplate,\n  Scale,\n  ScatterplotLayer,\n  ScatterplotLayersTemplate,\n  TitlePosition\n} from './types';\n\nexport const DEFAULT_CHART_TYPE: ChartType = 'discrete';\n\n/** Annotations keys */\nexport const THRESHOLDS_KEY = 'pl7.app/graph/thresholds';\nexport const LOWER_LIMIT_KEY = 'pl7.app/graph/axis/lowerLimit';\nexport const UPPER_LIMIT_KEY = 'pl7.app/graph/axis/upperLimit';\nexport const SYMMETRIC_RANGE_KEY = 'pl7.app/graph/axis/symmetricRange';\nexport const PALETTE_KEY = 'pl7.app/graph/palette';\nexport const AXIS_NATURE_KEY = 'pl7.app/axisNature';\nexport const COLUMN_MIN_KEY = 'pl7.app/min';\nexport const COLUMN_MAX_KEY = 'pl7.app/max';\nexport const SUBSET_FILTER_KEY = 'pl7.app/isSubset';\n\nexport function getInitialTemplate(\n  restoredTemplate: LayersTemplate | null,\n  chartType: ChartType\n) {\n  if (chartType === 'discrete') {\n    return restoredTemplate &&\n    DISCRETE_TEMPLATES_MAP[restoredTemplate as DiscreteLayersTemplate]\n      ? restoredTemplate\n      : 'box';\n  }\n  if (chartType === 'scatterplot' || chartType === 'scatterplot-umap') {\n    return restoredTemplate &&\n    SCATTERPLOT_TEMPLATES_MAP[restoredTemplate as ScatterplotLayersTemplate]\n      ? restoredTemplate\n      : 'dots';\n  }\n  if (chartType === 'dendro') {\n    return 'dendro';\n  }\n  return restoredTemplate ?? 'heatmap';\n}\n\nexport const DISCRETE_TEMPLATES_MAP: Record<\n  DiscreteLayersTemplate,\n  DiscreteLayer[]\n> = {\n  box: ['box'],\n  box_binnedDots: ['box', 'binnedDots'],\n  box_jitteredDots: ['box', 'jitteredDots'],\n  violin: ['violin'],\n  violin_binnedDots: ['violin', 'binnedDots'],\n  violin_jitteredDots: ['violin', 'jitteredDots'],\n  binnedDots: ['binnedDots'],\n  jitteredDots: ['jitteredDots'],\n  bar: ['bar'],\n  bar_line: ['bar', 'line'],\n  bar_errorbar: ['bar', 'errorbar'],\n  stackedBar: ['stackedBar'],\n  line: ['line'],\n  line_jitteredDots: ['line', 'jitteredDots'],\n  line_binnedDots: ['line', 'binnedDots'],\n  line_errorbar: ['line', 'errorbar'],\n  errorbar: ['errorbar'],\n  sina: ['sina'],\n  logo: ['logo']\n};\n\nexport const SCATTERPLOT_TEMPLATES_MAP: Record<\n  ScatterplotLayersTemplate,\n  ScatterplotLayer[]\n> = {\n  dots: ['dots'],\n  curve: ['curve'],\n  curve_dots: ['curve', 'dots']\n};\n\nexport const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<\n  ScatterplotLayersTemplate,\n  ScatterplotLayer[]\n>> = {\n  dots: ['dots'],\n  curve_dots: ['curve', 'dots']\n};\n\nexport const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]> = {\n  heatmap: ['heatmap'],\n  heatmapClustered: ['heatmapClustered']\n};\nexport const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]> = {\n  bins: ['bins']\n}\nexport const LAYER_TITLES: Record<Layer, string> = {\n  box: 'Boxplot',\n  binnedDots: 'Binned Dots',\n  jitteredDots: 'Jittered Dots',\n  violin: 'Violins',\n  bar: 'Bar',\n  stackedBar: 'Stacked Bar',\n  line: 'Line',\n  errorbar: 'Error Bar',\n  sina: 'Sina',\n  logo: 'Logo Plot',\n  dots: 'Scatter Plot',\n  curve: 'Curve',\n  heatmap: 'Heatmap',\n  heatmapClustered: 'Heatmap + Dendro',\n  dendro: 'Dendrogram',\n  bins: 'Histogram',\n  bubble: 'Bubble plot'\n};\n\nexport type DiscreteStatisticsState = {\n  overall: {\n    data: { testMethod: null | string };\n    validity: { testMethod: boolean };\n  };\n  referenceGroup: {\n    data: {\n      testMethod: null | string;\n      referenceGroup: null | string;\n      correctionMethod: string;\n      format: 'significance' | 'pValue';\n      ns: boolean;\n    };\n    validity: {\n      testMethod: boolean;\n      referenceGroup: boolean;\n    };\n  };\n  pairwise: {\n    data: {\n      testMethod: null | string;\n      correctionMethod: string;\n      format: 'significance' | 'pValue';\n      ns: boolean;\n    };\n    validity: { testMethod: boolean };\n  };\n};\n\nexport type ScatterplotStatisticsState = {\n  trend: {\n    on: boolean,\n    trim: boolean,\n    showLegend: boolean\n  },\n}\n\nexport type StatisticsState = DiscreteStatisticsState | ScatterplotStatisticsState;\n\nexport function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState {\n  if (chartType === 'discrete') {\n    const initial = initialData as DiscreteStatisticsState;\n    return {\n      overall: {\n        data: { testMethod: initial?.overall?.data?.testMethod ?? null },\n        validity: { testMethod: initial?.overall?.validity?.testMethod ?? true }\n      },\n      referenceGroup: {\n        data: {\n          testMethod: initial?.referenceGroup?.data?.testMethod ?? null,\n          referenceGroup: initial?.referenceGroup?.data?.referenceGroup ?? null,\n          correctionMethod: initial?.referenceGroup?.data?.correctionMethod ?? 'Bonferroni',\n          format: initial?.referenceGroup?.data?.format ?? 'significance',\n          ns: initial?.referenceGroup?.data?.ns ?? false\n        },\n        validity: {\n          testMethod: initial?.referenceGroup?.validity?.testMethod ?? true,\n          referenceGroup: initial?.referenceGroup?.validity?.referenceGroup ?? true\n        }\n      },\n      pairwise: {\n        data: {\n          testMethod: initial?.pairwise?.data?.testMethod ?? null,\n          correctionMethod: initial?.pairwise?.data?.correctionMethod ?? 'Bonferroni',\n          format: initial?.pairwise?.data?.format ?? 'significance',\n          ns: initial?.pairwise?.data?.ns ?? false\n        },\n        validity: { testMethod: initial?.pairwise?.validity?.testMethod ?? true }\n      }\n    } as DiscreteStatisticsState;\n  }\n  const initial = initialData as ScatterplotStatisticsState;\n  return {\n    trend: {\n      on: initial?.trend?.on ?? false,\n      trim: initial?.trend?.trim ?? false,\n      showLegend: initial?.trend?.showLegend ?? true\n    }\n  };\n}\n\nexport type NumberRange = { min: number, max: number }\nexport type MappingLink = { type: string, value?: string }; // {type: 'primaryGrouping'} for example\nexport type ColorAes = string | MappingLink;\nexport type DotShapeAes = DotShape | MappingLink;\nexport type DotSizeAes = number | NumberRange;\nexport type LineTypeAes = LineType | MappingLink;\nexport type FixedOrMappedAes = ColorAes | DotShapeAes | LineTypeAes;\n\nexport type ContinuousDataMappingSize = {\n  column: string,\n  range: NumberRange\n}\n\nexport type ContinuousDataMappingForGraph<T extends string | number> = {columnName: ColumnNameSchema, domain: number[], range: T[], type: 'linear' | 'log'}\n\nexport type ColumnNameSchema = {\n  type: 'column'\n  value: string,\n  label?: string\n  valueLabels?: string\n}\n\nexport function isNumberRange(v: number | NumberRange | null | undefined): v is NumberRange {\n  return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'min' in v && 'max' in v;\n}\n\nexport function isMappedAes(\n  item: FixedOrMappedAes | null | string | number | boolean | unknown\n): item is MappingLink {\n  return typeof item === 'object' && item !== null && 'type' in item;\n}\n\nexport function isContinuousDataMapping(v: ContinuousDataMappingSize | MappingLink | number | string | null | undefined): v is ContinuousDataMappingSize {\n  return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'range' in v;\n}\n\nexport type LayersSettings = {\n  //bubble\n  bubble: {\n    NAValueAs: number | null,\n    minRadius: number,\n    maxRadius: number,\n    normalizationDirection: 'row' | 'column' | null,\n    normalizationMethod: 'standardScaling' | 'meanNormalization',\n    strokeColor: null | string\n  },\n  // histogram\n  bins: {\n    fillColor: ColorAes | null,\n    opacity: number\n  },\n  //dendrogram\n  dendro: {\n    dotFill: ColorAes,\n    dotShape: DotShapeAes,\n    dotSize: DotSizeAes,\n    lineColor: ColorAes,\n    mode: 'normal' | 'useAllNodesAsLeaves',\n    leavesMode: 'normal' | 'alignLeavesToLine',\n    showTable: boolean,\n    showLegend: boolean,\n  },\n  //heatmap\n  heatmap: {\n    NAValueAs: number | null,\n    normalizationDirection: 'row' | 'column' | null,\n    normalizationMethod: 'standardScaling' | 'meanNormalization',\n  },\n  heatmapClustered: {\n    NAValueAs: number | null,\n    normalizationDirection: 'row' | 'column' | null,\n    normalizationMethod: 'standardScaling' | 'meanNormalization',\n    dendrogramX: boolean,\n    dendrogramY: boolean,\n    disableClusteringX: boolean,\n    disableClusteringY: boolean,\n  },\n  //scatterplot\n  dots: {\n    dotFill: ColorAes | null,\n    dotShape: DotShapeAes | null,\n    dotSize: ContinuousDataMappingSize | number | null\n  },\n  curve: {\n    smoothing: boolean,\n    lineColor: ColorAes\n  },\n  //discrete\n  box: {\n    showOutliers: boolean,\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    dotShape: DotShapeAes,\n    lineType: LineTypeAes,\n    gapWidth: number,\n    opacity: number,\n    stat: {\n      low: number,\n      middle: number,\n      upper: number,\n      k: number,\n    },\n  },\n  binnedDots: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    opacity: number,\n    showOutliers: boolean,\n  },\n  jitteredDots: {\n    dotFill: ColorAes | null,\n    dotShape: DotShapeAes,\n    lineColor: ColorAes,\n    opacity: number,\n    showOutliers: boolean,\n  },\n  violin: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    lineType: LineTypeAes,\n    opacity: number,\n    trim: boolean,\n    showQuartiles: boolean,\n    quartilesLineStyle: LineType,\n    medianLineStyle: LineType\n  },\n  bar: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    opacity: number,\n    height: 'max' | 'mean' | 'median',\n  },\n  stackedBar: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    opacity: number,\n    normalize: boolean\n  },\n  line: {\n    pointsValues: 'mean' | 'median',\n    lineColor: ColorAes | null,\n    dotShape: DotShapeAes,\n    lineType: LineTypeAes,\n    dotFill: ColorAes | null,\n    opacity: number,\n  },\n  errorbar: {\n    pointsValues: 'mean' | 'median',\n    interval: 'sd' | 'se' | '',\n    lineColor: ColorAes | null,\n    dotShape: DotShapeAes,\n    dotFill: ColorAes | null,\n    opacity: number,\n  },\n  sina: {\n    dotFill: ColorAes | null,\n    dotShape: DotShapeAes,\n    opacity: number,\n    showOutliers: boolean,\n  },\n  logo: {\n    normalize: boolean,\n    opacity: number,\n  }\n};\nexport const DEFAULT_LAYERS_SETTINGS: () => LayersSettings = () => ({\n  //bubble\n  bubble: {\n    NAValueAs: 0,\n    strokeColor: null,\n    minRadius: 3,\n    maxRadius: 38,\n    normalizationDirection: 'row',\n    normalizationMethod: 'standardScaling',\n  },\n  // histogram\n  bins: {\n    fillColor: null,\n    opacity: 1\n  },\n  //dendro\n  dendro: {\n    dotFill: DEFAULT_BLACK,\n    dotShape: DEFAULT_DOT_SHAPE,\n    dotSize: DEFAULT_DOT_SIZE,\n    lineColor: DEFAULT_BLACK,\n    mode: 'normal',\n    leavesMode: 'normal',\n    showTable: false,\n    showLegend: true\n  },\n  //heatmap\n  heatmap: {\n    NAValueAs: 0,\n    normalizationDirection: 'row',\n    normalizationMethod: 'standardScaling',\n  },\n  heatmapClustered: {\n    NAValueAs: 0,\n    normalizationDirection: 'row',\n    normalizationMethod: 'standardScaling',\n    dendrogramX: true,\n    dendrogramY: true,\n    disableClusteringX: false,\n    disableClusteringY: false\n  },\n  //scatterplot\n  dots: {\n    dotFill: null as ColorAes | null,\n    dotShape: null as DotShapeAes | null,\n    dotSize: null as ContinuousDataMappingSize | number | null\n  },\n  curve: { lineColor: DEFAULT_BLACK, smoothing: true },\n  //discrete\n  box: {\n    showOutliers: true,\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n    gapWidth: 0.2,\n    opacity: 1,\n    stat: {\n      low: 0.25,\n      middle: 0.5,\n      upper: 0.75,\n      k: 1.5\n    }\n  },\n  binnedDots: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    showOutliers: true\n  },\n  jitteredDots: {\n    dotFill: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    showOutliers: true\n  },\n  violin: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n    opacity: 1,\n    trim: false,\n    showQuartiles: false,\n    quartilesLineStyle: 'dashed',\n    medianLineStyle: 'solid'\n  },\n  bar: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    height: 'max'\n  },\n  stackedBar: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    normalize: false\n  },\n  line: {\n    pointsValues: 'mean',\n    lineColor: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n    dotFill: null as ColorAes | null,\n    opacity: 1\n  },\n  errorbar: {\n    pointsValues: 'mean',\n    interval: 'sd',\n    lineColor: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    dotFill: null as ColorAes | null,\n    opacity: 1\n  },\n  sina: {\n    dotFill: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    opacity: 1,\n    showOutliers: true\n  },\n  logo: {\n    normalize: false,\n    opacity: 1\n  }\n});\n\nexport function getDefaultLayersSettings() {\n  return DEFAULT_LAYERS_SETTINGS();\n}\n\nconst DISCRETE_LAYERS: Layer[] = [\n  'box',\n  'binnedDots',\n  'jitteredDots',\n  'violin',\n  'bar',\n  'stackedBar',\n  'line',\n  'errorbar',\n  'sina',\n  'logo'\n];\nconst SCATTERPLOT_LAYERS: Layer[] = ['dots', 'curve'];\nconst SCATTERPLOT_UMAP_LAYERS: Layer[] = ['dots'];\nconst HEATMAP_LAYERS: Layer[] = ['heatmap', 'heatmapClustered'];\nconst DENDRO_LAYERS: Layer[] = ['dendro'];\nconst HISTOGRAM_LAYERS: Layer[] = ['bins'];\nconst BUBBLE_LAYERS: Layer[] = ['bubble'];\nconst LAYERS_BY_CHART_TYPE: Record<ChartType, Layer[]> = {\n  discrete: DISCRETE_LAYERS,\n  scatterplot: SCATTERPLOT_LAYERS,\n  'scatterplot-umap': SCATTERPLOT_UMAP_LAYERS,\n  heatmap: HEATMAP_LAYERS,\n  dendro: DENDRO_LAYERS,\n  histogram: HISTOGRAM_LAYERS,\n  bubble: BUBBLE_LAYERS\n};\n\nexport function getInitialLayersSettings(\n  initialSettings?: DeepPartial<LayersSettings>\n): LayersSettings {\n  const defaultSettings = DEFAULT_LAYERS_SETTINGS();\n  const layers: Layer[] = Object.keys(defaultSettings) as Layer[];\n  return layers.reduce((res, layer) => {\n    Object.assign(\n      res[layer],\n      initialSettings?.[layer] ?? {}\n    );\n    return res;\n  }, defaultSettings);\n}\n\nexport type Sorting = 'asc' | 'desc';\nexport type AxesState = {\n  title: { value: string; position: TitlePosition; mode: AxisTitleMode; facetTitleFrame: Frame };\n  axisX: {\n    labelsPosition: LabelsPosition; // for heatmap - top/bottom/left/right/hidden\n    labelsRotation: LabelsRotation | null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n    axisLabelsAngle: 0 | 45 | 90; // for heatmap\n    groupLabelsAngle: 0 | 45 | 90; // for heatmap\n    titleMode: AxisTitleMode; // 'auto' - from column or 'custom' - from 'customTitle' field or 'hidden'\n    customTitle: string; // user axis title, not default from column\n    gridlines: boolean;\n    linesBetweenCategories: boolean; // for discrete - position for vertical gridlines\n    ticks: boolean;\n    scale: Scale; // linear or log\n    significantLinesStyle: LineType;\n    sorting: Sorting;\n    allowNullPrimaryGroups: boolean; // for discrete - allow group with null grouping value\n    allowNullSecondaryGroups: boolean;\n  };\n  axisY: {\n    titleMode: AxisTitleMode;\n    customTitle: string;\n    axisLabelsAngle: 0 | 45 | 90; // for heatmap\n    groupLabelsAngle: 0 | 45 | 90; // for heatmap\n    gridlines: boolean;\n    ticks: boolean;\n    scale: Scale;\n    significantLinesStyle: LineType;\n    sorting: Sorting;\n  };\n  legend: {};\n  other: {\n    frame: Frame | HeatmapFrame;\n    reverse: boolean;\n    facetSharedBy: 'x' | 'y' | 'xy' | 'none';\n    facetColumns: number;\n    binsCount: number;\n    groupingDirection: 'straight' | 'reverse';\n    groupingStack: 'vertical' | 'horizontal';\n  };\n};\n\nconst DEFAULT_AXES: () => AxesState = () => ({\n  title: {\n    value: 'Graph 1',\n    position: 'center',\n    mode: 'auto',\n    facetTitleFrame: 'full'\n  },\n  axisX: {\n    labelsPosition: 'bottom',\n    labelsRotation: null,\n    axisLabelsAngle: 90,\n    groupLabelsAngle: 45,\n    titleMode: 'auto',\n    customTitle: '',\n    gridlines: true,\n    linesBetweenCategories: true,\n    ticks: true,\n    scale: 'linear',\n    significantLinesStyle: 'dashed',\n    sorting: 'asc',\n    allowNullPrimaryGroups: false,\n    allowNullSecondaryGroups: false\n  },\n  axisY: {\n    titleMode: 'auto',\n    customTitle: '',\n    axisLabelsAngle: 90,\n    groupLabelsAngle: 45,\n    gridlines: true,\n    ticks: true,\n    scale: 'linear',\n    significantLinesStyle: 'dashed',\n    sorting: 'asc'\n  },\n  legend: {},\n  other: {\n    frame: 'full',\n    reverse: false,\n    facetSharedBy: 'xy',\n    facetColumns: 3,\n    binsCount: 10,\n    groupingDirection: 'straight',\n    groupingStack: 'vertical'\n  }\n});\n\nfunction isHeatmapFrame(frame: Frame | HeatmapFrame): frame is HeatmapFrame {\n  return frame === 'full' || frame === 'none';\n}\n\nexport function getInitialAxesSettings(\n  chartType: ChartType,\n  initialAxesSettings?: DeepPartial<AxesState>\n): AxesState {\n  const defaultAxes = DEFAULT_AXES();\n  if (!initialAxesSettings) {\n    return defaultAxes;\n  }\n\n  // TODO: divide into separated settings for chart types\n  function getFrame(frame?: Frame | HeatmapFrame): Frame | HeatmapFrame {\n    if (!frame) {\n      return 'full';\n    }\n    if (chartType === 'heatmap' && !isHeatmapFrame(frame)) {\n      return 'full' as HeatmapFrame;\n    }\n    if (chartType !== 'heatmap' && isHeatmapFrame(frame)) {\n      return frame === 'none' ? 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+{"version":3,"file":"constantsCommon.js","sources":["../../src/GraphMaker/constantsCommon.ts"],"sourcesContent":["import type { ChartType } from '@milaboratories/pf-plots';\nimport type { Component } from 'vue';\nimport {\n  DotShape,\n  LineType\n} from './components/AesSettings/types';\nimport {\n  DEFAULT_BLACK,\n  DEFAULT_DOT_SHAPE,\n  DEFAULT_LINE_TYPE\n} from './constantsAesthetic';\nimport { DEFAULT_DOT_SIZE, DEFAULT_LINE_COLOR } from './dataBindAes';\nimport BarAndErrorIcon from './icons/BarAndErrorIcon.vue';\nimport BarAndLineIcon from './icons/BarAndLineIcon.vue';\nimport BarIcon from './icons/BarIcon.vue';\nimport BinnedDotsIcon from './icons/BinnedDotsIcon.vue';\nimport BoxplotAndBinnedIcon from './icons/BoxplotAndBinnedIcon.vue';\nimport BoxplotAndJitterIcon from './icons/BoxplotAndJitterIcon.vue';\nimport BoxplotIcon from './icons/BoxplotIcon.vue';\nimport DendroIcon from './icons/DendroIcon.vue';\nimport HeatmapIcon from './icons/HeatmapIcon.vue';\nimport JitteredDotsIcon from './icons/JitteredDotsIcon.vue';\nimport LineAndBinnedIcon from './icons/LineAndBinnedIcon.vue';\nimport LineAndErrorbarIcon from './icons/LineAndErrorbarIcon.vue';\nimport LineAndJitterIcon from './icons/LineAndJitterIcon.vue';\nimport LineIcon from './icons/LineIcon.vue';\nimport LogoIcon from './icons/LogoIcon.vue';\nimport ScatterplotIcon from './icons/ScatterplotIcon.vue';\nimport SinaIcon from './icons/SinaIcon.vue';\nimport StackedBarIcon from './icons/StackedBarIcon.vue';\nimport ViolinAndBinnedIcon from './icons/ViolinAndBinnedIcon.vue';\nimport ViolinAndJitterIcon from './icons/ViolinAndJitterIcon.vue';\nimport ViolinIcon from './icons/ViolinIcon.vue';\nimport {\n  AxisTitleMode,\n  DeepPartial,\n  DiscreteLayer,\n  DiscreteLayersTemplate,\n  Frame,\n  HeatmapFrame, HeatmapLayer, HeatmapLayerTemplate, HistogramLayer, HistogramLayerTemplate,\n  LabelsPosition,\n  LabelsRotation,\n  Layer,\n  LayersTemplate,\n  Scale,\n  ScatterplotLayer,\n  ScatterplotLayersTemplate,\n  TitlePosition\n} from './types';\n\nexport const DEFAULT_CHART_TYPE: ChartType = 'discrete';\n\n/** Annotations keys */\nexport const THRESHOLDS_KEY = 'pl7.app/graph/thresholds';\nexport const LOWER_LIMIT_KEY = 'pl7.app/graph/axis/lowerLimit';\nexport const UPPER_LIMIT_KEY = 'pl7.app/graph/axis/upperLimit';\nexport const SYMMETRIC_RANGE_KEY = 'pl7.app/graph/axis/symmetricRange';\nexport const PALETTE_KEY = 'pl7.app/graph/palette';\nexport const AXIS_NATURE_KEY = 'pl7.app/axisNature';\nexport const COLUMN_MIN_KEY = 'pl7.app/min';\nexport const COLUMN_MAX_KEY = 'pl7.app/max';\nexport const SUBSET_FILTER_KEY = 'pl7.app/isSubset';\n\nexport function getInitialTemplate(\n  restoredTemplate: LayersTemplate | null,\n  chartType: ChartType\n) {\n  if (chartType === 'discrete') {\n    return restoredTemplate &&\n    DISCRETE_TEMPLATES_MAP[restoredTemplate as DiscreteLayersTemplate]\n      ? restoredTemplate\n      : 'box';\n  }\n  if (chartType === 'scatterplot' || chartType === 'scatterplot-umap') {\n    return restoredTemplate &&\n    SCATTERPLOT_TEMPLATES_MAP[restoredTemplate as ScatterplotLayersTemplate]\n      ? restoredTemplate\n      : 'dots';\n  }\n  if (chartType === 'dendro') {\n    return 'dendro';\n  }\n  return restoredTemplate ?? 'heatmap';\n}\n\nexport const DISCRETE_TEMPLATES_MAP: Record<\n  DiscreteLayersTemplate,\n  DiscreteLayer[]\n> = {\n  box: ['box'],\n  box_binnedDots: ['box', 'binnedDots'],\n  box_jitteredDots: ['box', 'jitteredDots'],\n  violin: ['violin'],\n  violin_binnedDots: ['violin', 'binnedDots'],\n  violin_jitteredDots: ['violin', 'jitteredDots'],\n  binnedDots: ['binnedDots'],\n  jitteredDots: ['jitteredDots'],\n  bar: ['bar'],\n  bar_line: ['bar', 'line'],\n  bar_errorbar: ['bar', 'errorbar'],\n  stackedBar: ['stackedBar'],\n  stackedArea: ['stackedArea'],\n  line: ['line'],\n  line_jitteredDots: ['line', 'jitteredDots'],\n  line_binnedDots: ['line', 'binnedDots'],\n  line_errorbar: ['line', 'errorbar'],\n  errorbar: ['errorbar'],\n  sina: ['sina'],\n  logo: ['logo']\n};\n\nexport const SCATTERPLOT_TEMPLATES_MAP: Record<\n  ScatterplotLayersTemplate,\n  ScatterplotLayer[]\n> = {\n  dots: ['dots'],\n  curve: ['curve'],\n  curve_dots: ['curve', 'dots']\n};\n\nexport const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<\n  ScatterplotLayersTemplate,\n  ScatterplotLayer[]\n>> = {\n  dots: ['dots'],\n  curve_dots: ['curve', 'dots']\n};\n\nexport const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]> = {\n  heatmap: ['heatmap'],\n  heatmapClustered: ['heatmapClustered']\n};\nexport const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]> = {\n  bins: ['bins']\n}\nexport const LAYER_TITLES: Record<Layer, string> = {\n  box: 'Boxplot',\n  binnedDots: 'Binned Dots',\n  jitteredDots: 'Jittered Dots',\n  violin: 'Violins',\n  bar: 'Bar',\n  stackedBar: 'Stacked Bar',\n  stackedArea: 'Stacked Bar + Stream Area',\n  line: 'Line',\n  errorbar: 'Error Bar',\n  sina: 'Sina',\n  logo: 'Logo Plot',\n  dots: 'Scatter Plot',\n  curve: 'Curve',\n  heatmap: 'Heatmap',\n  heatmapClustered: 'Heatmap + Dendro',\n  dendro: 'Dendrogram',\n  bins: 'Histogram',\n  bubble: 'Bubble plot'\n};\n\nexport type DiscreteStatisticsState = {\n  overall: {\n    data: { testMethod: null | string };\n    validity: { testMethod: boolean };\n  };\n  referenceGroup: {\n    data: {\n      testMethod: null | string;\n      referenceGroup: null | string;\n      correctionMethod: string;\n      format: 'significance' | 'pValue';\n      ns: boolean;\n    };\n    validity: {\n      testMethod: boolean;\n      referenceGroup: boolean;\n    };\n  };\n  pairwise: {\n    data: {\n      testMethod: null | string;\n      correctionMethod: string;\n      format: 'significance' | 'pValue';\n      ns: boolean;\n    };\n    validity: { testMethod: boolean };\n  };\n};\n\nexport type ScatterplotStatisticsState = {\n  trend: {\n    on: boolean,\n    trim: boolean,\n    showLegend: boolean\n  },\n}\n\nexport type StatisticsState = DiscreteStatisticsState | ScatterplotStatisticsState;\n\nexport function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState {\n  if (chartType === 'discrete') {\n    const initial = initialData as DiscreteStatisticsState;\n    return {\n      overall: {\n        data: { testMethod: initial?.overall?.data?.testMethod ?? null },\n        validity: { testMethod: initial?.overall?.validity?.testMethod ?? true }\n      },\n      referenceGroup: {\n        data: {\n          testMethod: initial?.referenceGroup?.data?.testMethod ?? null,\n          referenceGroup: initial?.referenceGroup?.data?.referenceGroup ?? null,\n          correctionMethod: initial?.referenceGroup?.data?.correctionMethod ?? 'Bonferroni',\n          format: initial?.referenceGroup?.data?.format ?? 'significance',\n          ns: initial?.referenceGroup?.data?.ns ?? false\n        },\n        validity: {\n          testMethod: initial?.referenceGroup?.validity?.testMethod ?? true,\n          referenceGroup: initial?.referenceGroup?.validity?.referenceGroup ?? true\n        }\n      },\n      pairwise: {\n        data: {\n          testMethod: initial?.pairwise?.data?.testMethod ?? null,\n          correctionMethod: initial?.pairwise?.data?.correctionMethod ?? 'Bonferroni',\n          format: initial?.pairwise?.data?.format ?? 'significance',\n          ns: initial?.pairwise?.data?.ns ?? false\n        },\n        validity: { testMethod: initial?.pairwise?.validity?.testMethod ?? true }\n      }\n    } as DiscreteStatisticsState;\n  }\n  const initial = initialData as ScatterplotStatisticsState;\n  return {\n    trend: {\n      on: initial?.trend?.on ?? false,\n      trim: initial?.trend?.trim ?? false,\n      showLegend: initial?.trend?.showLegend ?? true\n    }\n  };\n}\n\nexport type NumberRange = { min: number, max: number }\nexport type MappingLink = { type: string, value?: string }; // {type: 'primaryGrouping'} for example\nexport type ColorAes = string | MappingLink;\nexport type DotShapeAes = DotShape | MappingLink;\nexport type DotSizeAes = number | NumberRange;\nexport type LineTypeAes = LineType | MappingLink;\nexport type FixedOrMappedAes = ColorAes | DotShapeAes | LineTypeAes;\n\nexport type ContinuousDataMappingSize = {\n  column: string,\n  range: NumberRange\n}\n\nexport type ContinuousDataMappingForGraph<T extends string | number> = {columnName: ColumnNameSchema, domain: number[], range: T[], type: 'linear' | 'log'}\n\nexport type ColumnNameSchema = {\n  type: 'column'\n  value: string,\n  label?: string\n  valueLabels?: string\n}\n\nexport function isNumberRange(v: number | NumberRange | null | undefined): v is NumberRange {\n  return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'min' in v && 'max' in v;\n}\n\nexport function isMappedAes(\n  item: FixedOrMappedAes | null | string | number | boolean | unknown\n): item is MappingLink {\n  return typeof item === 'object' && item !== null && 'type' in item;\n}\n\nexport function isContinuousDataMapping(v: ContinuousDataMappingSize | MappingLink | number | string | null | undefined): v is ContinuousDataMappingSize {\n  return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'range' in v;\n}\n\nexport type LayersSettings = {\n  //bubble\n  bubble: {\n    NAValueAs: number | null,\n    minRadius: number,\n    maxRadius: number,\n    normalizationDirection: 'row' | 'column' | null,\n    normalizationMethod: 'standardScaling' | 'meanNormalization',\n    strokeColor: null | string\n  },\n  // histogram\n  bins: {\n    fillColor: ColorAes | null,\n    opacity: number\n  },\n  //dendrogram\n  dendro: {\n    dotFill: ColorAes,\n    dotShape: DotShapeAes,\n    dotSize: DotSizeAes,\n    lineColor: ColorAes,\n    mode: 'normal' | 'useAllNodesAsLeaves',\n    leavesMode: 'normal' | 'alignLeavesToLine',\n    showTable: boolean,\n    showLegend: boolean,\n  },\n  //heatmap\n  heatmap: {\n    NAValueAs: number | null,\n    normalizationDirection: 'row' | 'column' | null,\n    normalizationMethod: 'standardScaling' | 'meanNormalization',\n  },\n  heatmapClustered: {\n    NAValueAs: number | null,\n    normalizationDirection: 'row' | 'column' | null,\n    normalizationMethod: 'standardScaling' | 'meanNormalization',\n    dendrogramX: boolean,\n    dendrogramY: boolean,\n    disableClusteringX: boolean,\n    disableClusteringY: boolean,\n  },\n  //scatterplot\n  dots: {\n    dotFill: ColorAes | null,\n    dotShape: DotShapeAes | null,\n    dotSize: ContinuousDataMappingSize | number | null\n  },\n  curve: {\n    smoothing: boolean,\n    lineColor: ColorAes\n  },\n  //discrete\n  box: {\n    showOutliers: boolean,\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    dotShape: DotShapeAes,\n    lineType: LineTypeAes,\n    gapWidth: number,\n    opacity: number,\n    stat: {\n      low: number,\n      middle: number,\n      upper: number,\n      k: number,\n    },\n  },\n  binnedDots: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    opacity: number,\n    showOutliers: boolean,\n  },\n  jitteredDots: {\n    dotFill: ColorAes | null,\n    dotShape: DotShapeAes,\n    lineColor: ColorAes,\n    opacity: number,\n    showOutliers: boolean,\n  },\n  violin: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    lineType: LineTypeAes,\n    opacity: number,\n    trim: boolean,\n    showQuartiles: boolean,\n    quartilesLineStyle: LineType,\n    medianLineStyle: LineType\n  },\n  bar: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    opacity: number,\n    height: 'max' | 'mean' | 'median',\n  },\n  stackedBar: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    opacity: number,\n    normalize: boolean\n  },\n  stackedArea: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    barsOpacity: number,\n    areaOpacity: number,\n    normalize: boolean,\n    showBars: boolean\n  },\n  line: {\n    pointsValues: 'mean' | 'median',\n    lineColor: ColorAes | null,\n    dotShape: DotShapeAes,\n    lineType: LineTypeAes,\n    dotFill: ColorAes | null,\n    opacity: number,\n  },\n  errorbar: {\n    pointsValues: 'mean' | 'median',\n    interval: 'sd' | 'se' | '',\n    lineColor: ColorAes | null,\n    dotShape: DotShapeAes,\n    dotFill: ColorAes | null,\n    opacity: number,\n  },\n  sina: {\n    dotFill: ColorAes | null,\n    dotShape: DotShapeAes,\n    opacity: number,\n    showOutliers: boolean,\n  },\n  logo: {\n    normalize: boolean,\n    opacity: number,\n  }\n};\nexport const DEFAULT_LAYERS_SETTINGS: () => LayersSettings = () => ({\n  //bubble\n  bubble: {\n    NAValueAs: 0,\n    strokeColor: null,\n    minRadius: 3,\n    maxRadius: 38,\n    normalizationDirection: 'row',\n    normalizationMethod: 'standardScaling',\n  },\n  // histogram\n  bins: {\n    fillColor: null,\n    opacity: 1\n  },\n  //dendro\n  dendro: {\n    dotFill: DEFAULT_BLACK,\n    dotShape: DEFAULT_DOT_SHAPE,\n    dotSize: DEFAULT_DOT_SIZE,\n    lineColor: DEFAULT_BLACK,\n    mode: 'normal',\n    leavesMode: 'normal',\n    showTable: false,\n    showLegend: true\n  },\n  //heatmap\n  heatmap: {\n    NAValueAs: 0,\n    normalizationDirection: 'row',\n    normalizationMethod: 'standardScaling',\n  },\n  heatmapClustered: {\n    NAValueAs: 0,\n    normalizationDirection: 'row',\n    normalizationMethod: 'standardScaling',\n    dendrogramX: true,\n    dendrogramY: true,\n    disableClusteringX: false,\n    disableClusteringY: false\n  },\n  //scatterplot\n  dots: {\n    dotFill: null as ColorAes | null,\n    dotShape: null as DotShapeAes | null,\n    dotSize: null as ContinuousDataMappingSize | number | null\n  },\n  curve: { lineColor: DEFAULT_BLACK, smoothing: true },\n  //discrete\n  box: {\n    showOutliers: true,\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n    gapWidth: 0.2,\n    opacity: 1,\n    stat: {\n      low: 0.25,\n      middle: 0.5,\n      upper: 0.75,\n      k: 1.5\n    }\n  },\n  binnedDots: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    showOutliers: true\n  },\n  jitteredDots: {\n    dotFill: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    showOutliers: true\n  },\n  violin: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n    opacity: 1,\n    trim: false,\n    showQuartiles: false,\n    quartilesLineStyle: 'dashed',\n    medianLineStyle: 'solid'\n  },\n  bar: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    height: 'max'\n  },\n  stackedBar: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    normalize: false\n  },\n  stackedArea: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    barsOpacity: 1,\n    areaOpacity: 0.7,\n    normalize: false,\n    showBars: true\n  },\n  line: {\n    pointsValues: 'mean',\n    lineColor: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n    dotFill: null as ColorAes | null,\n    opacity: 1\n  },\n  errorbar: {\n    pointsValues: 'mean',\n    interval: 'sd',\n    lineColor: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    dotFill: null as ColorAes | null,\n    opacity: 1\n  },\n  sina: {\n    dotFill: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    opacity: 1,\n    showOutliers: true\n  },\n  logo: {\n    normalize: false,\n    opacity: 1\n  }\n});\n\nexport function getDefaultLayersSettings() {\n  return DEFAULT_LAYERS_SETTINGS();\n}\n\nconst DISCRETE_LAYERS: Layer[] = [\n  'box',\n  'binnedDots',\n  'jitteredDots',\n  'violin',\n  'bar',\n  'stackedBar',\n  'line',\n  'errorbar',\n  'sina',\n  'logo'\n];\nconst SCATTERPLOT_LAYERS: Layer[] = ['dots', 'curve'];\nconst SCATTERPLOT_UMAP_LAYERS: Layer[] = ['dots'];\nconst HEATMAP_LAYERS: Layer[] = ['heatmap', 'heatmapClustered'];\nconst DENDRO_LAYERS: Layer[] = ['dendro'];\nconst HISTOGRAM_LAYERS: Layer[] = ['bins'];\nconst BUBBLE_LAYERS: Layer[] = ['bubble'];\nconst LAYERS_BY_CHART_TYPE: Record<ChartType, Layer[]> = {\n  discrete: DISCRETE_LAYERS,\n  scatterplot: SCATTERPLOT_LAYERS,\n  'scatterplot-umap': SCATTERPLOT_UMAP_LAYERS,\n  heatmap: HEATMAP_LAYERS,\n  dendro: DENDRO_LAYERS,\n  histogram: HISTOGRAM_LAYERS,\n  bubble: BUBBLE_LAYERS\n};\n\nexport function getInitialLayersSettings(\n  initialSettings?: DeepPartial<LayersSettings>\n): LayersSettings {\n  const defaultSettings = DEFAULT_LAYERS_SETTINGS();\n  const layers: Layer[] = Object.keys(defaultSettings) as Layer[];\n  return layers.reduce((res, layer) => {\n    Object.assign(\n      res[layer],\n      initialSettings?.[layer] ?? {}\n    );\n    return res;\n  }, defaultSettings);\n}\n\nexport type Sorting = 'asc' | 'desc';\nexport type AxesState = {\n  title: { value: string; position: TitlePosition; mode: AxisTitleMode; facetTitleFrame: Frame };\n  axisX: {\n    labelsPosition: LabelsPosition; // for heatmap - top/bottom/left/right/hidden\n    labelsRotation: LabelsRotation | null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n    axisLabelsAngle: 0 | 45 | 90; // for heatmap\n    groupLabelsAngle: 0 | 45 | 90; // for heatmap\n    titleMode: AxisTitleMode; // 'auto' - from column or 'custom' - from 'customTitle' field or 'hidden'\n    customTitle: string; // user axis title, not default from column\n    gridlines: boolean;\n    linesBetweenCategories: boolean; // for discrete - position for vertical gridlines\n    ticks: boolean;\n    scale: Scale; // linear or log\n    significantLinesStyle: LineType;\n    sorting: Sorting;\n    allowNullPrimaryGroups: boolean; // for discrete - allow group with null grouping value\n    allowNullSecondaryGroups: boolean;\n  };\n  axisY: {\n    titleMode: AxisTitleMode;\n    customTitle: string;\n    axisLabelsAngle: 0 | 45 | 90; // for heatmap\n    groupLabelsAngle: 0 | 45 | 90; // for heatmap\n    gridlines: boolean;\n    ticks: boolean;\n    scale: Scale;\n    significantLinesStyle: LineType;\n    sorting: Sorting;\n  };\n  legend: {};\n  other: {\n    frame: Frame | HeatmapFrame;\n    reverse: boolean;\n    facetSharedBy: 'x' | 'y' | 'xy' | 'none';\n    facetColumns: number;\n    binsCount: number;\n    groupingDirection: 'straight' | 'reverse';\n    groupingStack: 'vertical' | 'horizontal';\n  };\n};\n\nconst DEFAULT_AXES: () => AxesState = () => ({\n  title: {\n    value: 'Graph 1',\n    position: 'center',\n    mode: 'auto',\n    facetTitleFrame: 'full'\n  },\n  axisX: {\n    labelsPosition: 'bottom',\n    labelsRotation: null,\n    axisLabelsAngle: 90,\n    groupLabelsAngle: 45,\n    titleMode: 'auto',\n    customTitle: '',\n    gridlines: true,\n    linesBetweenCategories: true,\n    ticks: true,\n    scale: 'linear',\n    significantLinesStyle: 'dashed',\n    sorting: 'asc',\n    allowNullPrimaryGroups: false,\n    allowNullSecondaryGroups: false\n  },\n  axisY: {\n    titleMode: 'auto',\n    customTitle: '',\n    axisLabelsAngle: 90,\n    groupLabelsAngle: 45,\n    gridlines: true,\n    ticks: true,\n    scale: 'linear',\n    significantLinesStyle: 'dashed',\n    sorting: 'asc'\n  },\n  legend: {},\n  other: {\n    frame: 'full',\n    reverse: false,\n    facetSharedBy: 'xy',\n    facetColumns: 3,\n    binsCount: 10,\n    groupingDirection: 'straight',\n    groupingStack: 'vertical'\n  }\n});\n\nfunction isHeatmapFrame(frame: Frame | HeatmapFrame): frame is HeatmapFrame {\n  return frame === 'full' || frame === 'none';\n}\n\nexport function getInitialAxesSettings(\n  chartType: ChartType,\n  initialAxesSettings?: DeepPartial<AxesState>\n): AxesState {\n  const defaultAxes = DEFAULT_AXES();\n  if (!initialAxesSettings) {\n    return defaultAxes;\n  }\n\n  // TODO: divide into separated settings for chart types\n  function getFrame(frame?: Frame | HeatmapFrame): Frame | HeatmapFrame {\n    if (!frame) {\n      return 'full';\n    }\n    if (chartType === 'heatmap' && !isHeatmapFrame(frame)) {\n      return 'full' as HeatmapFrame;\n    }\n    if (chartType !== 'heatmap' && isHeatmapFrame(frame)) {\n      return frame === 'none' ? 'empty' : (frame as Frame);\n    }\n    return frame;\n  }\n\n  return {\n    title: {\n      ...defaultAxes.title,\n      ...initialAxesSettings.title\n    },\n    axisX: {\n      ...defaultAxes.axisX,\n      ...initialAxesSettings.axisX\n    },\n    axisY: {\n      ...defaultAxes.axisY,\n      ...initialAxesSettings.axisY\n    },\n    legend: {\n      ...defaultAxes.legend,\n      ...initialAxesSettings.legend\n    },\n    other: {\n      ...defaultAxes.other,\n      ...initialAxesSettings.other,\n      frame: getFrame(initialAxesSettings.other?.frame)\n    }\n  };\n}\n\nexport const LAYER_ICONS: Record<LayersTemplate, Component> = {\n  box: BoxplotIcon,\n  box_binnedDots: BoxplotAndBinnedIcon,\n  box_jitteredDots: BoxplotAndJitterIcon,\n  binnedDots: BinnedDotsIcon,\n  jitteredDots: JitteredDotsIcon,\n  violin: ViolinIcon,\n  violin_binnedDots: ViolinAndBinnedIcon,\n  violin_jitteredDots: ViolinAndJitterIcon,\n  bar: BarIcon,\n  bar_line: BarAndLineIcon,\n  bar_errorbar: BarAndErrorIcon,\n  stackedBar: StackedBarIcon,\n  stackedArea: StackedBarIcon,\n  line: LineIcon,\n  line_binnedDots: LineAndBinnedIcon,\n  line_jitteredDots: LineAndJitterIcon,\n  line_errorbar: LineAndErrorbarIcon,\n  errorbar: BarAndLineIcon,\n  sina: SinaIcon,\n  logo: LogoIcon,\n  dots: ScatterplotIcon,\n  curve: LineIcon,\n  curve_dots: LineAndJitterIcon,\n  heatmap: HeatmapIcon,\n  heatmapClustered: DendroIcon,\n  dendro: DendroIcon,\n  bins: BarIcon,\n  bubble: HeatmapIcon\n};\n\ntype Option = { value: string; text: string };\nexport const STAT_TEST_METHOD: Option[] = [\n  { value: 'ttest', text: 'TTest' },\n  { value: 'anova', text: 'ANOVA' },\n  { value: 'wilcoxon', text: 'Wilcoxon' },\n  { value: 'kruskalWallis', text: 'Kruskal-Wallis' }\n];\n\nexport const STAT_CORRECTION_METHOD: Option[] = [\n  { value: 'BenjaminiHochberg', text: 'Benjamini-Hochberg' },\n  { value: 'BenjaminiYekutieli', text: 'Benjamini-Yekutieli' },\n  { value: 'Bonferroni', text: 'Bonferroni' },\n  { value: 'Hochberg', text: 'Hochberg' },\n  { value: 'Holm', text: 'Holm' },\n  { value: 'Hommel', text: 'Hommel' },\n  { value: 'none', text: 'None' }\n];\n\nexport const FORMAT_P_VALUE_OPTIONS: Option[] = [\n  { value: 'pValue', text: 'p-value' },\n  { value: 'significance', text: 'significance' }\n];\n\nexport type AesType = 'fill' | 'stroke' | 'dotShape' | 'lineType' | 'size';\n\nexport const DEFAULT_WIDTH = 600;\nexport const DEFAULT_HEIGHT = 350;\nexport const DEFAULT_WIDTH_SMALL = 400;\nexport const DEFAULT_HEIGHT_SMALL = 250;\n\nexport const MAX_SEARCH_OPTIONS_LIST_LENGTH = 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package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue.d.ts

@@ -0,0 +1,3 @@
+declare const _default: import('vue').DefineComponent<{}, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<{}> & Readonly<{}>, {}, {}, {}, {}, string, import('vue').ComponentProvideOptions, true, {}, any>;
+export default _default;
+//# sourceMappingURL=StackedArea.vue.d.ts.map

package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"StackedArea.vue.d.ts","sourceRoot":"","sources":["../../../../../../src/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue"],"names":[],"mappings":";AAoUA,wBAKG"}