@metriport/fhir-sdk 1.2.7 → 1.3.0

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;AAAA,qDAAkD;AAAzC,gHAAA,aAAa,OAAA"}

package/dist/internal/bundle-operations.d.ts

@@ -0,0 +1,14 @@
+import { Bundle, BundleEntry, Resource } from "@medplum/fhirtypes";
+/**
+ * Create a new bundle entry from an existing entry, preserving fullUrl
+ */
+export declare function createBundleEntry(originalEntry: BundleEntry, resource: Resource): BundleEntry;
+/**
+ * Create a new bundle with specified entries, maintaining original metadata
+ */
+export declare function createExportBundle(originalBundle: Bundle, entries: BundleEntry[]): Bundle;
+/**
+ * Find original bundle entry for a given resource
+ */
+export declare function findOriginalEntry(bundle: Bundle, resource: Resource): BundleEntry | undefined;
+//# sourceMappingURL=bundle-operations.d.ts.map

package/dist/internal/bundle-operations.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"bundle-operations.d.ts","sourceRoot":"","sources":["../../src/internal/bundle-operations.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAEnE;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,aAAa,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,GAAG,WAAW,CAW7F;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,cAAc,EAAE,MAAM,EAAE,OAAO,EAAE,WAAW,EAAE,GAAG,MAAM,CAuBzF;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,QAAQ,GAAG,WAAW,GAAG,SAAS,CAS7F"}

package/dist/internal/bundle-operations.js

@@ -0,0 +1,55 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.findOriginalEntry = exports.createExportBundle = exports.createBundleEntry = void 0;
+/**
+ * Create a new bundle entry from an existing entry, preserving fullUrl
+ */
+function createBundleEntry(originalEntry, resource) {
+    if (originalEntry.fullUrl) {
+        return {
+            fullUrl: originalEntry.fullUrl,
+            resource: resource,
+        };
+    }
+    return {
+        resource: resource,
+    };
+}
+exports.createBundleEntry = createBundleEntry;
+/**
+ * Create a new bundle with specified entries, maintaining original metadata
+ */
+function createExportBundle(originalBundle, entries) {
+    const exportBundle = {
+        resourceType: "Bundle",
+        type: originalBundle.type || "collection",
+        total: entries.length,
+        entry: entries,
+    };
+    // Preserve original bundle metadata (FR-6.4)
+    if (originalBundle.id) {
+        exportBundle.id = originalBundle.id;
+    }
+    if (originalBundle.meta) {
+        exportBundle.meta = { ...originalBundle.meta };
+    }
+    if (originalBundle.identifier) {
+        exportBundle.identifier = originalBundle.identifier;
+    }
+    if (originalBundle.timestamp) {
+        exportBundle.timestamp = originalBundle.timestamp;
+    }
+    return exportBundle;
+}
+exports.createExportBundle = createExportBundle;
+/**
+ * Find original bundle entry for a given resource
+ */
+function findOriginalEntry(bundle, resource) {
+    if (!bundle.entry) {
+        return undefined;
+    }
+    return bundle.entry.find(entry => entry.resource === resource || (entry.resource?.id && entry.resource.id === resource.id));
+}
+exports.findOriginalEntry = findOriginalEntry;
+//# sourceMappingURL=bundle-operations.js.map

package/dist/internal/bundle-operations.js.map

@@ -0,0 +1 @@
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package/dist/internal/date-extraction.d.ts

@@ -0,0 +1,12 @@
+import { Resource } from "@medplum/fhirtypes";
+import { DateIndexRecord } from "../types/sdk-types";
+/**
+ * Parse date string to milliseconds timestamp, with validation
+ */
+export declare function parseDate(dateString: string | undefined): number | undefined;
+/**
+ * Extract date intervals from a resource based on its type
+ * Returns array of date intervals with metadata
+ */
+export declare function extractDateIntervalsFromResource(resource: Resource): DateIndexRecord[];
+//# sourceMappingURL=date-extraction.d.ts.map

package/dist/internal/date-extraction.d.ts.map

@@ -0,0 +1 @@
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package/dist/internal/date-extraction.js

@@ -0,0 +1,206 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.extractDateIntervalsFromResource = exports.parseDate = void 0;
+/**
+ * Parse date string to milliseconds timestamp, with validation
+ */
+function parseDate(dateString) {
+    if (!dateString) {
+        return undefined;
+    }
+    const date = new Date(dateString);
+    const timestamp = date.getTime();
+    // Validate date is reasonable (between 1900 and 2100)
+    if (isNaN(timestamp) ||
+        timestamp < new Date("1900-01-01").getTime() ||
+        timestamp > new Date("2100-01-01").getTime()) {
+        return undefined;
+    }
+    return timestamp;
+}
+exports.parseDate = parseDate;
+/**
+ * Extract date intervals from a resource based on its type
+ * Returns array of date intervals with metadata
+ */
+function extractDateIntervalsFromResource(resource) {
+    const intervals = [];
+    const resourceId = resource.id;
+    if (resourceId === undefined) {
+        return intervals;
+    }
+    /**
+     * Helper to add a date interval to the intervals array. Use arrow to prevent hoist.
+     */
+    // eslint-disable-next-line @metriport/eslint-rules/no-named-arrow-functions
+    const addDateInterval = (dateField, low, high) => {
+        const lowMs = parseDate(low);
+        const highMs = parseDate(high ?? low);
+        if (lowMs !== undefined && highMs !== undefined) {
+            intervals.push({
+                low: lowMs,
+                high: highMs,
+                resourceId: resourceId,
+                resourceType: resource.resourceType,
+                dateField,
+            });
+        }
+    };
+    switch (resource.resourceType) {
+        case "AllergyIntolerance": {
+            const r = resource;
+            if (r.onsetDateTime) {
+                addDateInterval("onsetDateTime", r.onsetDateTime);
+            }
+            if (r.onsetPeriod?.start || r.onsetPeriod?.end) {
+                addDateInterval("onsetPeriod", r.onsetPeriod.start, r.onsetPeriod.end);
+            }
+            if (r.lastOccurrence) {
+                addDateInterval("lastOccurrence", r.lastOccurrence);
+            }
+            if (r.recordedDate) {
+                addDateInterval("recordedDate", r.recordedDate);
+            }
+            break;
+        }
+        case "Condition": {
+            const r = resource;
+            if (r.onsetDateTime) {
+                addDateInterval("onsetDateTime", r.onsetDateTime);
+            }
+            if (r.onsetPeriod?.start || r.onsetPeriod?.end) {
+                addDateInterval("onsetPeriod", r.onsetPeriod.start, r.onsetPeriod.end);
+            }
+            if (r.abatementDateTime) {
+                addDateInterval("abatementDateTime", r.abatementDateTime);
+            }
+            if (r.abatementPeriod?.start || r.abatementPeriod?.end) {
+                addDateInterval("abatementPeriod", r.abatementPeriod.start, r.abatementPeriod.end);
+            }
+            if (r.recordedDate) {
+                addDateInterval("recordedDate", r.recordedDate);
+            }
+            break;
+        }
+        case "Observation": {
+            const r = resource;
+            if (r.effectiveDateTime) {
+                addDateInterval("effectiveDateTime", r.effectiveDateTime);
+            }
+            if (r.effectivePeriod?.start || r.effectivePeriod?.end) {
+                addDateInterval("effectivePeriod", r.effectivePeriod.start, r.effectivePeriod.end);
+            }
+            if (r.effectiveInstant) {
+                addDateInterval("effectiveInstant", r.effectiveInstant);
+            }
+            if (r.issued) {
+                addDateInterval("issued", r.issued);
+            }
+            break;
+        }
+        case "Encounter": {
+            const r = resource;
+            if (r.period?.start || r.period?.end) {
+                addDateInterval("period", r.period.start, r.period.end);
+            }
+            break;
+        }
+        case "Procedure": {
+            const r = resource;
+            if (r.performedDateTime) {
+                addDateInterval("performedDateTime", r.performedDateTime);
+            }
+            if (r.performedPeriod?.start || r.performedPeriod?.end) {
+                addDateInterval("performedPeriod", r.performedPeriod.start, r.performedPeriod.end);
+            }
+            break;
+        }
+        case "Immunization": {
+            const r = resource;
+            if (r.occurrenceDateTime) {
+                addDateInterval("occurrenceDateTime", r.occurrenceDateTime);
+            }
+            if (r.recorded) {
+                addDateInterval("recorded", r.recorded);
+            }
+            break;
+        }
+        case "DiagnosticReport": {
+            const r = resource;
+            if (r.effectiveDateTime) {
+                addDateInterval("effectiveDateTime", r.effectiveDateTime);
+            }
+            if (r.effectivePeriod?.start || r.effectivePeriod?.end) {
+                addDateInterval("effectivePeriod", r.effectivePeriod.start, r.effectivePeriod.end);
+            }
+            if (r.issued) {
+                addDateInterval("issued", r.issued);
+            }
+            break;
+        }
+        case "MedicationRequest": {
+            const r = resource;
+            if (r.authoredOn) {
+                addDateInterval("authoredOn", r.authoredOn);
+            }
+            break;
+        }
+        case "MedicationAdministration": {
+            const r = resource;
+            if (r.effectiveDateTime) {
+                addDateInterval("effectiveDateTime", r.effectiveDateTime);
+            }
+            if (r.effectivePeriod?.start || r.effectivePeriod?.end) {
+                addDateInterval("effectivePeriod", r.effectivePeriod.start, r.effectivePeriod.end);
+            }
+            break;
+        }
+        case "MedicationStatement": {
+            const r = resource;
+            if (r.effectiveDateTime) {
+                addDateInterval("effectiveDateTime", r.effectiveDateTime);
+            }
+            if (r.effectivePeriod?.start || r.effectivePeriod?.end) {
+                addDateInterval("effectivePeriod", r.effectivePeriod.start, r.effectivePeriod.end);
+            }
+            break;
+        }
+        case "MedicationDispense": {
+            const r = resource;
+            if (r.whenHandedOver) {
+                addDateInterval("whenHandedOver", r.whenHandedOver);
+            }
+            if (r.whenPrepared) {
+                addDateInterval("whenPrepared", r.whenPrepared);
+            }
+            break;
+        }
+        case "DocumentReference": {
+            const r = resource;
+            if (r.date) {
+                addDateInterval("date", r.date);
+            }
+            if (r.context?.period?.start || r.context?.period?.end) {
+                addDateInterval("context.period", r.context.period.start, r.context.period.end);
+            }
+            break;
+        }
+        case "Composition": {
+            const r = resource;
+            if (r.date) {
+                addDateInterval("date", r.date);
+            }
+            break;
+        }
+        case "Coverage": {
+            const r = resource;
+            if (r.period?.start || r.period?.end) {
+                addDateInterval("period", r.period.start, r.period.end);
+            }
+            break;
+        }
+    }
+    return intervals;
+}
+exports.extractDateIntervalsFromResource = extractDateIntervalsFromResource;
+//# sourceMappingURL=date-extraction.js.map

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package/dist/internal/graph-traversal.d.ts

@@ -0,0 +1,13 @@
+import { Resource } from "@medplum/fhirtypes";
+import { Smart } from "../types/smart-resources";
+import { WalkOptions, WalkResult } from "../types/sdk-types";
+/**
+ * Walk references from a starting resource using BFS traversal.
+ * Discovers all reachable resources up to maxDepth levels.
+ *
+ * @param startResource - The smart resource to start traversal from
+ * @param options - Walk options including maxDepth and includeStartResource
+ * @returns WalkResult containing all discovered resources organized by depth
+ */
+export declare function walkReferences<T extends Resource>(startResource: Smart<T>, options?: WalkOptions): WalkResult<T>;
+//# sourceMappingURL=graph-traversal.d.ts.map

package/dist/internal/graph-traversal.d.ts.map

@@ -0,0 +1 @@
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package/dist/internal/graph-traversal.js

@@ -0,0 +1,89 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.walkReferences = void 0;
+const smart_resources_1 = require("../types/smart-resources");
+/**
+ * Walk references from a starting resource using BFS traversal.
+ * Discovers all reachable resources up to maxDepth levels.
+ *
+ * @param startResource - The smart resource to start traversal from
+ * @param options - Walk options including maxDepth and includeStartResource
+ * @returns WalkResult containing all discovered resources organized by depth
+ */
+function walkReferences(startResource, options) {
+    const maxDepth = options?.maxDepth ?? Infinity;
+    const includeStartResource = options?.includeStartResource ?? true;
+    const resourcesByDepth = new Map();
+    const visited = new Set();
+    const queue = [];
+    // Initialize with start resource at depth 0
+    queue.push({ resource: startResource, depth: 0 });
+    if (startResource.id) {
+        visited.add(startResource.id);
+    }
+    let maxDepthReached = 0;
+    while (queue.length > 0) {
+        // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+        const { resource, depth } = queue.shift();
+        // Track max depth reached
+        if (depth > maxDepthReached) {
+            maxDepthReached = depth;
+        }
+        // Add resource to current depth level
+        if (!resourcesByDepth.has(depth)) {
+            resourcesByDepth.set(depth, []);
+        }
+        // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+        resourcesByDepth.get(depth).push(resource);
+        // Stop if we've reached max depth
+        if (depth >= maxDepth) {
+            continue;
+        }
+        // Get all reference methods for this resource type
+        const referenceMethods = smart_resources_1.REFERENCE_METHOD_MAPPING[resource.resourceType];
+        if (!referenceMethods) {
+            continue;
+        }
+        // Iterate through all reference methods
+        for (const methodName of Object.keys(referenceMethods)) {
+            // Call the reference method
+            // eslint-disable-next-line @typescript-eslint/no-explicit-any
+            const referencedResources = resource[methodName]();
+            if (!referencedResources) {
+                continue;
+            }
+            // Handle both single and array references
+            const resourceArray = Array.isArray(referencedResources)
+                ? referencedResources
+                : [referencedResources];
+            for (const referencedResource of resourceArray) {
+                if (!referencedResource?.id) {
+                    continue;
+                }
+                // Skip if already visited
+                if (visited.has(referencedResource.id)) {
+                    continue;
+                }
+                visited.add(referencedResource.id);
+                queue.push({ resource: referencedResource, depth: depth + 1 });
+            }
+        }
+    }
+    // Build flat array of all resources
+    const allResources = [];
+    for (const [depth, resources] of resourcesByDepth.entries()) {
+        // Skip depth 0 (start resource) if includeStartResource is false
+        if (depth === 0 && !includeStartResource) {
+            continue;
+        }
+        allResources.push(...resources);
+    }
+    return {
+        resourcesByDepth,
+        allResources,
+        startResource,
+        depthReached: maxDepthReached,
+    };
+}
+exports.walkReferences = walkReferences;
+//# sourceMappingURL=graph-traversal.js.map

package/dist/internal/graph-traversal.js.map

@@ -0,0 +1 @@
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package/dist/internal/indexing.d.ts

@@ -0,0 +1,17 @@
+import { Bundle, Resource } from "@medplum/fhirtypes";
+import { ReverseReference } from "../types/sdk-types";
+import { IntervalTree } from "../utils/interval-tree";
+import { DateIndexRecord } from "../types/sdk-types";
+/**
+ * Build O(1) indexes for resource lookup
+ */
+export declare function buildResourceIndexes(bundle: Bundle, resourcesById: Map<string, Resource>, resourcesByFullUrl: Map<string, Resource>, resourcesByType: Map<string, Resource[]>, reverseReferencesById: Map<string, ReverseReference[]>, dateRangeIndex: IntervalTree<DateIndexRecord, number>, resolutionStack: Set<string>): void;
+/**
+ * Build reverse reference index for O(1) reverse lookup
+ */
+export declare function buildReverseReferenceIndex(bundle: Bundle, reverseReferencesById: Map<string, ReverseReference[]>, resourcesByFullUrl: Map<string, Resource>): void;
+/**
+ * Build date range index for O(log n + k) date range searches
+ */
+export declare function buildDateRangeIndex(bundle: Bundle, dateRangeIndex: IntervalTree<DateIndexRecord, number>): void;
+//# sourceMappingURL=indexing.d.ts.map

package/dist/internal/indexing.d.ts.map

@@ -0,0 +1 @@
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package/dist/internal/indexing.js

@@ -0,0 +1,118 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.buildDateRangeIndex = exports.buildReverseReferenceIndex = exports.buildResourceIndexes = void 0;
+const reference_utils_1 = require("./reference-utils");
+const date_extraction_1 = require("./date-extraction");
+/**
+ * Build O(1) indexes for resource lookup
+ */
+function buildResourceIndexes(bundle, resourcesById, resourcesByFullUrl, resourcesByType, reverseReferencesById, dateRangeIndex, resolutionStack) {
+    if (!bundle.entry) {
+        return;
+    }
+    for (const entry of bundle.entry) {
+        if (!entry.resource) {
+            continue;
+        }
+        const resource = entry.resource;
+        // Index by resource.id if it exists
+        if (resource.id) {
+            resourcesById.set(resource.id, resource);
+        }
+        // Index by fullUrl if it exists
+        if (entry.fullUrl) {
+            resourcesByFullUrl.set(entry.fullUrl, resource);
+        }
+        // Index by resource type for type-specific getters
+        const resourceType = resource.resourceType;
+        if (!resourcesByType.has(resourceType)) {
+            resourcesByType.set(resourceType, []);
+        }
+        // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+        resourcesByType.get(resourceType).push(resource);
+    }
+    // Build reverse reference index
+    buildReverseReferenceIndex(bundle, reverseReferencesById, resourcesByFullUrl);
+    // Build date range index
+    buildDateRangeIndex(bundle, dateRangeIndex);
+    // Clear resolution stack after index building
+    resolutionStack.clear();
+}
+exports.buildResourceIndexes = buildResourceIndexes;
+/**
+ * Build reverse reference index for O(1) reverse lookup
+ */
+function buildReverseReferenceIndex(bundle, reverseReferencesById, resourcesByFullUrl) {
+    if (!bundle.entry) {
+        return;
+    }
+    for (const entry of bundle.entry) {
+        if (!entry.resource) {
+            continue;
+        }
+        const resource = entry.resource;
+        const sourceResourceId = resource.id ?? entry.fullUrl ?? "unknown";
+        const references = (0, reference_utils_1.findAllReferences)(resource);
+        for (const { field, reference } of references) {
+            // Extract target ID from reference
+            const targetId = (0, reference_utils_1.extractTargetIdFromReference)(reference);
+            if (!targetId) {
+                continue;
+            }
+            // Add to reverse index for both the extracted ID and the full reference
+            const reverseRef = {
+                sourceResourceId,
+                sourceResourceType: resource.resourceType,
+                referenceField: (0, reference_utils_1.normalizeReferenceField)(field),
+            };
+            // Index by extracted resource ID (e.g., "patient-123" from "Patient/patient-123")
+            if (!reverseReferencesById.has(targetId)) {
+                reverseReferencesById.set(targetId, []);
+            }
+            reverseReferencesById.get(targetId)?.push(reverseRef);
+            // Also index by full reference if it's different (e.g., "urn:uuid:patient-123")
+            if (targetId !== reference) {
+                if (!reverseReferencesById.has(reference)) {
+                    reverseReferencesById.set(reference, []);
+                }
+                reverseReferencesById.get(reference)?.push(reverseRef);
+            }
+            // Also try to index by the actual resource ID if we can find it efficiently
+            // Check if this reference can be resolved to a resource with a different ID
+            if (!reference.includes("/")) {
+                // This is likely a fullUrl reference (e.g., "urn:uuid:xxx")
+                // Check if we have a resource with this fullUrl
+                const targetResource = resourcesByFullUrl.get(reference);
+                if (targetResource?.id &&
+                    targetResource.id !== targetId &&
+                    targetResource.id !== reference) {
+                    if (!reverseReferencesById.has(targetResource.id)) {
+                        reverseReferencesById.set(targetResource.id, []);
+                    }
+                    reverseReferencesById.get(targetResource.id)?.push(reverseRef);
+                }
+            }
+        }
+    }
+}
+exports.buildReverseReferenceIndex = buildReverseReferenceIndex;
+/**
+ * Build date range index for O(log n + k) date range searches
+ */
+function buildDateRangeIndex(bundle, dateRangeIndex) {
+    if (!bundle.entry) {
+        return;
+    }
+    for (const entry of bundle.entry) {
+        if (!entry.resource || !entry.resource.id) {
+            continue;
+        }
+        const resource = entry.resource;
+        const dateIntervals = (0, date_extraction_1.extractDateIntervalsFromResource)(resource);
+        for (const interval of dateIntervals) {
+            dateRangeIndex.insert(interval);
+        }
+    }
+}
+exports.buildDateRangeIndex = buildDateRangeIndex;
+//# sourceMappingURL=indexing.js.map

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