@metriport/fhir-sdk 1.2.7 → 1.3.0

package/dist/fhir-bundle-sdk.js

@@ -0,0 +1,527 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.FhirBundleSdk = void 0;
+const sdk_types_1 = require("./types/sdk-types");
+const interval_tree_1 = require("./utils/interval-tree");
+const validation_1 = require("./internal/validation");
+const date_extraction_1 = require("./internal/date-extraction");
+const indexing_1 = require("./internal/indexing");
+const reference_resolution_1 = require("./internal/reference-resolution");
+const bundle_operations_1 = require("./internal/bundle-operations");
+const graph_traversal_1 = require("./internal/graph-traversal");
+const llm_context_1 = require("./internal/llm-context");
+/**
+ * FHIR Bundle SDK for parsing, querying, and manipulating FHIR bundles with reference resolution
+ */
+class FhirBundleSdk {
+    constructor(bundle) {
+        this.resourcesById = new Map();
+        this.resourcesByFullUrl = new Map();
+        this.resourcesByType = new Map();
+        // Reverse reference index: maps resource ID to resources that reference it
+        this.reverseReferencesById = new Map();
+        // Date range index: interval tree for O(log n + k) date range searches
+        this.dateRangeIndex = new interval_tree_1.IntervalTree();
+        // Smart resource caching to maintain object identity
+        this.smartResourceCache = new WeakMap();
+        // Array caching for type-specific getters to maintain reference identity
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        this.smartResourceArrayCache = new Map();
+        // Circular reference protection
+        this.resolutionStack = new Set();
+        // FR-1.1, FR-1.4: Initialize bundle and create indexes
+        this.bundle = bundle;
+        this.bundle.total = bundle.entry?.length ?? 0;
+        (0, indexing_1.buildResourceIndexes)(this.bundle, this.resourcesById, this.resourcesByFullUrl, this.resourcesByType, this.reverseReferencesById, this.dateRangeIndex, this.resolutionStack);
+    }
+    get total() {
+        if (!this.bundle.entry) {
+            throw new Error("No valid total - bundle property `entry` is undefined");
+        }
+        return this.bundle.entry.length;
+    }
+    get entry() {
+        if (!this.bundle.entry) {
+            console.error("Bundle property `entry` is undefined");
+            return [];
+        }
+        return this.bundle.entry;
+    }
+    toObject() {
+        return this.bundle;
+    }
+    /**
+     * Strip non-clinical metadata from a FHIR resource to reduce noise for LLM consumption.
+     * Removes: meta, extension, modifierExtension, text
+     * Returns an immutable copy without mutating the original.
+     */
+    static stripNonClinicalData(resource) {
+        return (0, llm_context_1.stripNonClinicalData)(resource);
+    }
+    /**
+     * Create a new FhirBundleSdk instance (async for backwards compatibility)
+     * FR-1.2: Validate bundle resourceType
+     */
+    static async create(bundle) {
+        return FhirBundleSdk.createSync(bundle);
+    }
+    /**
+     * Create a new FhirBundleSdk instance synchronously
+     * FR-1.2: Validate bundle resourceType
+     */
+    static createSync(bundle) {
+        // FR-1.2: Validate bundle resourceType
+        if (bundle.resourceType !== "Bundle") {
+            throw new Error("Invalid bundle: resourceType must be 'Bundle'");
+        }
+        return new FhirBundleSdk(bundle);
+    }
+    /**
+     * Create a smart resource with reference resolution methods
+     * FR-5.1: Resources returned by SDK have additional getter methods for each Reference field
+     * FR-5.7: Reference resolution operates in O(1) time complexity per reference
+     * FR-5.8: Original reference fields remain unchanged
+     */
+    createSmartResource(resource) {
+        return (0, reference_resolution_1.createSmartResource)(resource, this.smartResourceCache, this.resourcesById, this.resourcesByFullUrl, this.resolutionStack, (targetId, options) => this.getResourcesReferencingId(targetId, options));
+    }
+    /**
+     * FR-2.1: Validate all references in the bundle
+     * FR-2.2: Identifies references by Resource/id pattern and fullUrl references
+     * FR-2.3: Handles both relative and absolute references
+     * FR-2.4: Returns validation result with broken reference details
+     */
+    lookForBrokenReferences() {
+        return (0, validation_1.lookForBrokenReferences)(this.bundle, this.resourcesById, this.resourcesByFullUrl);
+    }
+    /**
+     * FR-3.1: Get resource by ID with type parameter support
+     * FR-3.2: Method searches both resource.id and entry.fullUrl for matches
+     * FR-3.4: Method returns undefined if resource not found
+     * FR-3.5: Lookup operates in O(1) time complexity
+     * FR-5.1: Returns smart resource with reference resolution methods
+     */
+    getResourceById(id) {
+        // First try to find by resource.id
+        const resourceById = this.resourcesById.get(id);
+        if (resourceById) {
+            return this.createSmartResource(resourceById);
+        }
+        // Then try to find by fullUrl
+        const resourceByFullUrl = this.resourcesByFullUrl.get(id);
+        if (resourceByFullUrl) {
+            return this.createSmartResource(resourceByFullUrl);
+        }
+        // Return undefined if not found (FR-3.4)
+        return undefined;
+    }
+    /**
+     * Generic helper method to get a resource by ID with type validation
+     */
+    getResourceByIdAndType(id, resourceType) {
+        const resource = this.getResourceById(id);
+        if (resource && resource.resourceType === resourceType) {
+            return resource;
+        }
+        return undefined;
+    }
+    /**
+     * Generic helper method to get all resources of a specific type
+     * FR-10.1: Returns references to cached objects, not copies
+     */
+    getResourcesByType(resourceType) {
+        // Check cache first to maintain array reference identity
+        const cached = this.smartResourceArrayCache.get(resourceType);
+        if (cached) {
+            return cached;
+        }
+        const resources = (this.resourcesByType.get(resourceType) || []);
+        const smartResources = resources.map(resource => this.createSmartResource(resource));
+        // Cache the array to maintain reference identity
+        this.smartResourceArrayCache.set(resourceType, smartResources);
+        return smartResources;
+    }
+    /**
+     * FR-6.1: Export subset of resources by their IDs
+     * FR-6.4: Exported bundles maintain original bundle metadata but update total count
+     * FR-6.5: Exported bundles include only resources that exist in the original bundle
+     * FR-6.6: Exported bundles preserve original entry.fullUrl values
+     */
+    exportSubset(resourceIds) {
+        const exportEntries = [];
+        for (const resourceId of resourceIds) {
+            const resource = this.getResourceById(resourceId);
+            if (resource) {
+                const originalEntry = (0, bundle_operations_1.findOriginalEntry)(this.bundle, resource);
+                if (originalEntry) {
+                    exportEntries.push((0, bundle_operations_1.createBundleEntry)(originalEntry, resource));
+                }
+            }
+            // FR-6.5: Silently skip resources that don't exist
+        }
+        return (0, bundle_operations_1.createExportBundle)(this.bundle, exportEntries);
+    }
+    /**
+     * FR-6.2: Export all resources of a specific type
+     * FR-6.4: Exported bundles maintain original bundle metadata but update total count
+     * FR-6.6: Exported bundles preserve original entry.fullUrl values
+     */
+    exportByType(resourceType) {
+        const resources = this.resourcesByType.get(resourceType) || [];
+        const exportEntries = [];
+        for (const resource of resources) {
+            const originalEntry = (0, bundle_operations_1.findOriginalEntry)(this.bundle, resource);
+            if (originalEntry) {
+                exportEntries.push((0, bundle_operations_1.createBundleEntry)(originalEntry, resource));
+            }
+        }
+        return (0, bundle_operations_1.createExportBundle)(this.bundle, exportEntries);
+    }
+    /**
+     * FR-6.3: Export all resources of specified types
+     * FR-6.4: Exported bundles maintain original bundle metadata but update total count
+     * FR-6.6: Exported bundles preserve original entry.fullUrl values
+     */
+    exportByTypes(resourceTypes) {
+        const exportEntries = [];
+        for (const resourceType of resourceTypes) {
+            const resources = this.resourcesByType.get(resourceType) || [];
+            for (const resource of resources) {
+                const originalEntry = (0, bundle_operations_1.findOriginalEntry)(this.bundle, resource);
+                if (originalEntry) {
+                    exportEntries.push((0, bundle_operations_1.createBundleEntry)(originalEntry, resource));
+                }
+            }
+        }
+        return (0, bundle_operations_1.createExportBundle)(this.bundle, exportEntries);
+    }
+    /**
+     * Concatenate entries from another FhirBundleSdk with this bundle
+     * Returns a new bundle with combined entries while preserving original metadata
+     */
+    async concatEntries(otherSdk) {
+        const currentEntries = this.bundle.entry || [];
+        const otherEntries = otherSdk.bundle.entry || [];
+        const combinedEntries = [...currentEntries, ...otherEntries];
+        const resultBundle = (0, bundle_operations_1.createExportBundle)(this.bundle, combinedEntries);
+        return await FhirBundleSdk.create(resultBundle);
+    }
+    /**
+     * Diff this bundle with another bundle or FhirBundleSdk by comparing resource ids.
+     * Returns three FhirBundleSdk instances: common, baseOnly, parameterOnly.
+     */
+    async diff(other) {
+        const baseBundle = this.bundle;
+        const parameterBundle = other instanceof FhirBundleSdk ? other.bundle : other;
+        const commonEntries = [];
+        const baseOnlyEntries = [];
+        const parameterOnlyEntries = [];
+        // Create maps with resource identifiers (prefer resource.id, fallback to fullUrl)
+        const baseResourceIdentifiers = new Map();
+        const parameterResourceIdentifiers = new Map();
+        // Populate base bundle identifiers
+        for (const entry of baseBundle?.entry ?? []) {
+            const identifier = (0, sdk_types_1.getResourceIdentifier)(entry);
+            if (identifier) {
+                baseResourceIdentifiers.set(identifier, entry);
+            }
+        }
+        // Populate parameter bundle identifiers
+        for (const entry of parameterBundle?.entry ?? []) {
+            const identifier = (0, sdk_types_1.getResourceIdentifier)(entry);
+            if (identifier) {
+                parameterResourceIdentifiers.set(identifier, entry);
+            }
+        }
+        // Find common and base-only resources
+        for (const [identifier, entry] of baseResourceIdentifiers.entries()) {
+            if (parameterResourceIdentifiers.has(identifier)) {
+                commonEntries.push(entry);
+            }
+            else {
+                baseOnlyEntries.push(entry);
+            }
+        }
+        // Find parameter-only resources
+        for (const [identifier, entry] of parameterResourceIdentifiers.entries()) {
+            if (!baseResourceIdentifiers.has(identifier)) {
+                parameterOnlyEntries.push(entry);
+            }
+        }
+        return {
+            common: await FhirBundleSdk.create((0, bundle_operations_1.createExportBundle)(this.bundle, commonEntries)),
+            baseOnly: await FhirBundleSdk.create((0, bundle_operations_1.createExportBundle)(this.bundle, baseOnlyEntries)),
+            parameterOnly: await FhirBundleSdk.create((0, bundle_operations_1.createExportBundle)(this.bundle, parameterOnlyEntries)),
+        };
+    }
+    /**
+     * Walk references from a starting resource using BFS traversal.
+     * Discovers all reachable resources up to maxDepth levels.
+     *
+     * @param startResource - The smart resource to start traversal from
+     * @param options - Walk options including maxDepth and includeStartResource
+     * @returns WalkResult containing all discovered resources organized by depth
+     */
+    walkReferences(startResource, options) {
+        return (0, graph_traversal_1.walkReferences)(startResource, options);
+    }
+    /**
+     * Generate LLM-friendly context from a starting resource and its related resources.
+     * Uses BFS to discover related resources, strips non-clinical data, and formats output.
+     *
+     * @param startResource - The smart resource to start traversal from
+     * @param options - Options for depth, inclusion, and format
+     * @returns Formatted string suitable for LLM context
+     */
+    generateLLMContext(startResource, options) {
+        return (0, llm_context_1.generateLLMContext)(startResource, options, (sr, opts) => this.walkReferences(sr, opts));
+    }
+    /**
+     * Get all resources that reference a given resource ID (reverse reference lookup).
+     * Operates in O(1) time complexity.
+     *
+     * @param targetId - The ID of the resource to find references to
+     * @param options - Optional filters for resourceType and referenceField
+     * @returns Array of smart resources that reference the target resource
+     */
+    getResourcesReferencingId(targetId, options) {
+        const reverseRefs = this.reverseReferencesById.get(targetId) ?? [];
+        let filteredRefs = reverseRefs;
+        // Apply resource type filter
+        if (options?.resourceType) {
+            filteredRefs = filteredRefs.filter(ref => ref.sourceResourceType === options.resourceType);
+        }
+        // Apply reference field filter
+        if (options?.referenceField) {
+            filteredRefs = filteredRefs.filter(ref => ref.referenceField === options.referenceField);
+        }
+        // Convert to smart resources
+        const smartResources = [];
+        for (const ref of filteredRefs) {
+            const resource = this.getResourceById(ref.sourceResourceId);
+            if (resource) {
+                smartResources.push(resource);
+            }
+        }
+        return smartResources;
+    }
+    /**
+     * Search for resources by date range using interval tree.
+     * Operates in O(log n + k) time complexity, where k is the number of matching intervals.
+     *
+     * @param options - Search options including date range and optional filters
+     * @returns Array of smart resources that match the date range criteria
+     */
+    searchByDateRange(options) {
+        const { dateFrom, dateTo, resourceTypes, dateFields } = options;
+        const fromMs = (0, date_extraction_1.parseDate)(typeof dateFrom === "string" ? dateFrom : dateFrom.toISOString());
+        const toMs = (0, date_extraction_1.parseDate)(dateTo
+            ? typeof dateTo === "string"
+                ? dateTo
+                : dateTo.toISOString()
+            : new Date().toISOString());
+        if (fromMs === undefined) {
+            throw new Error("Invalid dateFrom parameter");
+        }
+        if (toMs === undefined) {
+            throw new Error("Invalid dateTo parameter");
+        }
+        const matchingRecords = this.dateRangeIndex.search(fromMs, toMs);
+        let filteredRecords = matchingRecords;
+        if (resourceTypes && resourceTypes.length > 0) {
+            const resourceTypeSet = new Set(resourceTypes);
+            filteredRecords = filteredRecords.filter(record => resourceTypeSet.has(record.resourceType));
+        }
+        if (dateFields && dateFields.length > 0) {
+            const dateFieldSet = new Set(dateFields);
+            filteredRecords = filteredRecords.filter(record => dateFieldSet.has(record.dateField));
+        }
+        const resourceIdSet = new Set(filteredRecords.map(record => record.resourceId));
+        const smartResources = [];
+        for (const resourceId of resourceIdSet) {
+            const resource = this.getResourceById(resourceId);
+            if (resource) {
+                smartResources.push(resource);
+            }
+        }
+        return smartResources;
+    }
+}
+exports.FhirBundleSdk = FhirBundleSdk;
+/**
+ * Configuration for dynamically generated resource getter methods.
+ *
+ * Each entry in this array automatically generates both single and collection getter methods.
+ *
+ * **Example:**
+ * ```typescript
+ * {
+ *   resourceType: 'Patient',
+ *   singleGetterMethodName: 'getPatientById',
+ *   collectionGetterMethodName: 'getPatients'
+ * }
+ * ```
+ *
+ * **Generates the equivalent of:**
+ * ```typescript
+ * // Single resource getter
+ * getPatientById(id: string): Smart<Patient> | undefined {
+ *   return this.getResourceByIdAndType<Patient>(id, 'Patient');
+ * }
+ *
+ * // Collection getter
+ * getPatients(): Smart<Patient>[] {
+ *   return this.getResourcesByType<Patient>('Patient');
+ * }
+ * ```
+ *
+ * **Usage:**
+ * ```typescript
+ * const sdk = await FhirBundleSdk.create(bundle);
+ * const patient = sdk.getPatientById('patient-123'); // Smart<Patient> | undefined
+ * const allPatients = sdk.getPatients(); // Smart<Patient>[]
+ * ```
+ *
+ * To add a new resource type, simply add a new entry to this array and declare
+ * the corresponding method signatures in the class body.
+ */
+FhirBundleSdk.RESOURCE_METHODS = [
+    {
+        resourceType: "Patient",
+        singleGetterMethodName: "getPatientById",
+        collectionGetterMethodName: "getPatients",
+    },
+    {
+        resourceType: "Observation",
+        singleGetterMethodName: "getObservationById",
+        collectionGetterMethodName: "getObservations",
+    },
+    {
+        resourceType: "Encounter",
+        singleGetterMethodName: "getEncounterById",
+        collectionGetterMethodName: "getEncounters",
+    },
+    {
+        resourceType: "AllergyIntolerance",
+        singleGetterMethodName: "getAllergyIntoleranceById",
+        collectionGetterMethodName: "getAllergyIntolerances",
+    },
+    {
+        resourceType: "Condition",
+        singleGetterMethodName: "getConditionById",
+        collectionGetterMethodName: "getConditions",
+    },
+    {
+        resourceType: "Organization",
+        singleGetterMethodName: "getOrganizationById",
+        collectionGetterMethodName: "getOrganizations",
+    },
+    {
+        resourceType: "Location",
+        singleGetterMethodName: "getLocationById",
+        collectionGetterMethodName: "getLocations",
+    },
+    {
+        resourceType: "Practitioner",
+        singleGetterMethodName: "getPractitionerById",
+        collectionGetterMethodName: "getPractitioners",
+    },
+    {
+        resourceType: "DiagnosticReport",
+        singleGetterMethodName: "getDiagnosticReportById",
+        collectionGetterMethodName: "getDiagnosticReports",
+    },
+    {
+        resourceType: "Composition",
+        singleGetterMethodName: "getCompositionById",
+        collectionGetterMethodName: "getCompositions",
+    },
+    {
+        resourceType: "Coverage",
+        singleGetterMethodName: "getCoverageById",
+        collectionGetterMethodName: "getCoverages",
+    },
+    {
+        resourceType: "DocumentReference",
+        singleGetterMethodName: "getDocumentReferenceById",
+        collectionGetterMethodName: "getDocumentReferences",
+    },
+    {
+        resourceType: "Immunization",
+        singleGetterMethodName: "getImmunizationById",
+        collectionGetterMethodName: "getImmunizations",
+    },
+    {
+        resourceType: "Medication",
+        singleGetterMethodName: "getMedicationById",
+        collectionGetterMethodName: "getMedications",
+    },
+    {
+        resourceType: "MedicationRequest",
+        singleGetterMethodName: "getMedicationRequestById",
+        collectionGetterMethodName: "getMedicationRequests",
+    },
+    {
+        resourceType: "Procedure",
+        singleGetterMethodName: "getProcedureById",
+        collectionGetterMethodName: "getProcedures",
+    },
+    {
+        resourceType: "FamilyMemberHistory",
+        singleGetterMethodName: "getFamilyMemberHistoryById",
+        collectionGetterMethodName: "getFamilyMemberHistories",
+    },
+    {
+        resourceType: "MedicationAdministration",
+        singleGetterMethodName: "getMedicationAdministrationById",
+        collectionGetterMethodName: "getMedicationAdministrations",
+    },
+    {
+        resourceType: "MedicationDispense",
+        singleGetterMethodName: "getMedicationDispenseById",
+        collectionGetterMethodName: "getMedicationDispenses",
+    },
+    {
+        resourceType: "MedicationStatement",
+        singleGetterMethodName: "getMedicationStatementById",
+        collectionGetterMethodName: "getMedicationStatements",
+    },
+    {
+        resourceType: "RelatedPerson",
+        singleGetterMethodName: "getRelatedPersonById",
+        collectionGetterMethodName: "getRelatedPersons",
+    },
+    {
+        resourceType: "RiskAssessment",
+        singleGetterMethodName: "getRiskAssessmentById",
+        collectionGetterMethodName: "getRiskAssessments",
+    },
+    {
+        resourceType: "ServiceRequest",
+        singleGetterMethodName: "getServiceRequestById",
+        collectionGetterMethodName: "getServiceRequests",
+    },
+];
+// Static initialization block to generate methods
+(() => {
+    // Generate both single and collection getter methods from unified configuration
+    for (const { resourceType, singleGetterMethodName, collectionGetterMethodName, } of FhirBundleSdk.RESOURCE_METHODS) {
+        // Generate single resource getter (e.g., getPatientById)
+        Object.defineProperty(FhirBundleSdk.prototype, singleGetterMethodName, {
+            value: function (id) {
+                return this.getResourceByIdAndType(id, resourceType);
+            },
+            writable: false,
+            configurable: false,
+        });
+        // Generate collection getter (e.g., getPatients)
+        Object.defineProperty(FhirBundleSdk.prototype, collectionGetterMethodName, {
+            value: function () {
+                return this.getResourcesByType(resourceType);
+            },
+            writable: false,
+            configurable: false,
+        });
+    }
+})();
+//# sourceMappingURL=fhir-bundle-sdk.js.map

package/dist/fhir-bundle-sdk.js.map

@@ -0,0 +1 @@
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