@metriport/fhir-sdk 1.2.5

package/dist/__tests__/phase5-verification.test.js

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+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+/* eslint-disable @typescript-eslint/no-non-null-assertion */
+const index_1 = require("../index");
+const fhir_bundles_1 = require("./fixtures/fhir-bundles");
+describe("Phase 5 Verification - Smart Reference Resolution", () => {
+    describe("FR-5.1: Resources returned by SDK have additional getter methods for each Reference field", () => {
+        it("should add reference methods to Observation resources", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            expect(typeof observation.getSubject).toBe("function");
+            expect(typeof observation.getEncounter).toBe("function");
+            expect(typeof observation.getPerformers).toBe("function");
+        });
+        it("should add reference methods to Encounter resources", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const encounters = sdk.getEncounters();
+            expect(encounters.length).toBeGreaterThan(0);
+            const encounter = encounters[0];
+            expect(typeof encounter.getSubject).toBe("function");
+            expect(typeof encounter.getParticipants).toBe("function");
+        });
+    });
+    describe("FR-5.2: For Observation.subject reference, SDK adds getSubject() method", () => {
+        it("should resolve subject reference to Patient", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            const subject = observation.getSubject();
+            expect(subject).toBeDefined();
+            expect(subject?.resourceType).toBe("Patient");
+            expect(subject?.id).toBe("patient-123");
+        });
+    });
+    describe("FR-5.3: For Observation.encounter reference, SDK adds getEncounter() method", () => {
+        it("should resolve encounter reference to Encounter", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            const encounter = observation.getEncounter();
+            expect(encounter).toBeDefined();
+            expect(encounter?.resourceType).toBe("Encounter");
+            expect(encounter?.id).toBe("encounter-789");
+        });
+    });
+    describe("FR-5.4: For Observation.performer reference array, SDK adds getPerformers() method", () => {
+        it("should resolve performer references to array of resources", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            const performers = observation.getPerformers();
+            expect(Array.isArray(performers)).toBe(true);
+            expect(performers.length).toBe(1);
+            expect(performers[0]?.resourceType).toBe("Practitioner");
+            expect(performers[0]?.id).toBe("practitioner-456");
+        });
+    });
+    describe("FR-5.5: Reference resolution methods handle both resource.id and fullUrl matching", () => {
+        it("should resolve references by resource.id", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            const subject = observation.getSubject();
+            expect(subject?.id).toBe("patient-123");
+        });
+    });
+    describe("FR-5.6: Reference resolution methods return undefined for unresolvable references", () => {
+        it("should return undefined for broken references", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.bundleWithBrokenReferences);
+            const observations = sdk.getObservations();
+            if (observations.length > 0) {
+                const observation = observations[0];
+                expect(observation.getSubject()).toBeUndefined();
+                expect(observation.getEncounter()).toBeUndefined();
+            }
+        });
+        it("should return empty array for missing array references", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.bundleWithBrokenReferences);
+            const observations = sdk.getObservations();
+            if (observations.length > 0) {
+                const observation = observations[0];
+                const performers = observation.getPerformers();
+                expect(Array.isArray(performers)).toBe(true);
+                expect(performers).toHaveLength(0);
+            }
+        });
+    });
+    describe("FR-5.7: Reference resolution operates in O(1) time complexity per reference", () => {
+        it("should resolve references in O(1) time", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            const start = performance.now();
+            observation.getSubject();
+            const end = performance.now();
+            expect(end - start).toBeLessThan(fhir_bundles_1.CONSTANT_TIME_EXPECTED_THRESHOLD_MS);
+        });
+    });
+    describe("FR-5.8: Original reference fields remain unchanged", () => {
+        it("should preserve original reference fields", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            expect(observation.subject).toEqual({ reference: "Patient/patient-123" });
+            expect(observation.encounter).toEqual({ reference: "Encounter/encounter-789" });
+            expect(observation.performer).toEqual([{ reference: "Practitioner/practitioner-456" }]);
+        });
+        it("should not include getter methods in JSON serialization", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            const serialized = JSON.stringify(observation);
+            expect(serialized).not.toContain("getSubject");
+            expect(serialized).not.toContain("getEncounter");
+            expect(serialized).not.toContain("getPerformer");
+        });
+    });
+    describe("Reference Chaining", () => {
+        it("should support chaining through resolved references", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            // Chain: Observation → Encounter → Patient
+            const patientViaChain = observation.getEncounter()?.getSubject();
+            expect(patientViaChain).toBeDefined();
+            expect(patientViaChain?.resourceType).toBe("Patient");
+            expect(patientViaChain?.id).toBe("patient-123");
+        });
+        it("should handle broken chains gracefully", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.bundleWithBrokenReferences);
+            const observations = sdk.getObservations();
+            if (observations.length > 0) {
+                const observation = observations[0];
+                const brokenChain = observation.getEncounter()?.getSubject();
+                expect(brokenChain).toBeUndefined();
+            }
+        });
+    });
+    describe("Smart Resource Identity and Caching", () => {
+        it("should maintain object identity for cached resources", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observation1 = sdk.getObservations()[0];
+            const observation2 = sdk.getObservations()[0];
+            expect(observation1).toBe(observation2);
+        });
+        it("should maintain consistency across different access methods", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observationFromList = sdk.getObservations()[0];
+            const observationById = sdk.getResourceById("observation-001");
+            expect(observationFromList).toBe(observationById);
+        });
+        it("should cache resolved references", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            const subject1 = observation.getSubject();
+            const subject2 = observation.getSubject();
+            expect(subject1).toBe(subject2);
+        });
+    });
+    describe("Array Reference Chaining", () => {
+        it("should support chaining through array elements", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const reports = sdk.getDiagnosticReports();
+            if (reports.length > 0) {
+                const report = reports[0];
+                const results = report.getResults();
+                expect(Array.isArray(results)).toBe(true);
+                if (results.length > 0) {
+                    const firstResult = results[0];
+                    expect(typeof firstResult.getSubject).toBe("function");
+                    const patient = firstResult.getSubject();
+                    expect(patient?.resourceType).toBe("Patient");
+                }
+            }
+        });
+    });
+    describe("Smart Resource Marker", () => {
+        it("should mark resources as smart resources", async () => {
+            const sdk = await index_1.FhirBundleSdk.create(fhir_bundles_1.validCompleteBundle);
+            const observations = sdk.getObservations();
+            expect(observations.length).toBeGreaterThan(0);
+            const observation = observations[0];
+            // Check the smart resource marker
+            expect(observation.__isSmartResource).toBe(true);
+        });
+    });
+});
+//# sourceMappingURL=phase5-verification.test.js.map

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package/dist/index.d.ts

@@ -0,0 +1,245 @@
+import { AllergyIntolerance, Bundle, BundleEntry, Composition, Condition, Coverage, DiagnosticReport, DocumentReference, Encounter, FamilyMemberHistory, Immunization, Location, Medication, MedicationAdministration, MedicationDispense, MedicationRequest, MedicationStatement, Observation, Organization, Patient, Practitioner, Procedure, RelatedPerson, Resource, RiskAssessment, ServiceRequest } from "@medplum/fhirtypes";
+import { Smart } from "./types/smart-resources";
+export { Smart } from "./types/smart-resources";
+export { AllergyIntolerance, Bundle, Composition, Condition, Coverage, DiagnosticReport, DocumentReference, Encounter, FamilyMemberHistory, Immunization, Location, Medication, MedicationAdministration, MedicationDispense, MedicationRequest, MedicationStatement, Observation, Organization, Patient, Practitioner, Procedure, RelatedPerson, Resource, RiskAssessment, ServiceRequest, } from "@medplum/fhirtypes";
+/**
+ * Validation result interface
+ */
+export interface ValidationResult {
+    hasBrokenReferences: boolean;
+    brokenReferences: BrokenReference[];
+}
+/**
+ * Broken reference details interface
+ */
+export interface BrokenReference {
+    sourceResourceId: string;
+    sourceResourceType: string;
+    referenceField: string;
+    reference: string;
+}
+/**
+ * Bundle diff result interface
+ */
+export interface BundleDiffResult {
+    /** Resources that exist in both bundles */
+    common: FhirBundleSdk;
+    /** Resources that exist only in the base bundle (this bundle) */
+    baseOnly: FhirBundleSdk;
+    /** Resources that exist only in the parameter bundle */
+    parameterOnly: FhirBundleSdk;
+}
+/**
+ * FHIR Bundle SDK for parsing, querying, and manipulating FHIR bundles with reference resolution
+ */
+export declare class FhirBundleSdk {
+    private bundle;
+    private resourcesById;
+    private resourcesByFullUrl;
+    private resourcesByType;
+    private smartResourceCache;
+    private smartResourceArrayCache;
+    private resolutionStack;
+    /**
+     * Configuration for dynamically generated resource getter methods.
+     *
+     * Each entry in this array automatically generates both single and collection getter methods.
+     *
+     * **Example:**
+     * ```typescript
+     * {
+     *   resourceType: 'Patient',
+     *   singleGetterMethodName: 'getPatientById',
+     *   collectionGetterMethodName: 'getPatients'
+     * }
+     * ```
+     *
+     * **Generates the equivalent of:**
+     * ```typescript
+     * // Single resource getter
+     * getPatientById(id: string): Smart<Patient> | undefined {
+     *   return this.getResourceByIdAndType<Patient>(id, 'Patient');
+     * }
+     *
+     * // Collection getter
+     * getPatients(): Smart<Patient>[] {
+     *   return this.getResourcesByType<Patient>('Patient');
+     * }
+     * ```
+     *
+     * **Usage:**
+     * ```typescript
+     * const sdk = await FhirBundleSdk.create(bundle);
+     * const patient = sdk.getPatientById('patient-123'); // Smart<Patient> | undefined
+     * const allPatients = sdk.getPatients(); // Smart<Patient>[]
+     * ```
+     *
+     * To add a new resource type, simply add a new entry to this array and declare
+     * the corresponding method signatures in the class body.
+     */
+    private static readonly RESOURCE_METHODS;
+    private constructor();
+    get total(): number;
+    get entry(): BundleEntry[];
+    toObject(): Bundle;
+    /**
+     * Create a new FhirBundleSdk instance (async for backwards compatibility)
+     * FR-1.2: Validate bundle resourceType
+     */
+    static create(bundle: Bundle): Promise<FhirBundleSdk>;
+    /**
+     * Create a new FhirBundleSdk instance synchronously
+     * FR-1.2: Validate bundle resourceType
+     */
+    static createSync(bundle: Bundle): FhirBundleSdk;
+    /**
+     * Build O(1) indexes for resource lookup
+     */
+    private buildResourceIndexes;
+    /**
+     * Create a smart resource with reference resolution methods
+     * FR-5.1: Resources returned by SDK have additional getter methods for each Reference field
+     * FR-5.7: Reference resolution operates in O(1) time complexity per reference
+     * FR-5.8: Original reference fields remain unchanged
+     */
+    private createSmartResource;
+    /**
+     * Resolve a reference method call to actual resources
+     * FR-5.2-5.6: Handle different reference types and patterns
+     */
+    private resolveReference;
+    /**
+     * Resolve a single reference object to a resource
+     * FR-5.5: Reference resolution methods handle both resource.id and fullUrl matching
+     */
+    private resolveReferenceObject;
+    /**
+     * Check if a reference field expects an array of references
+     */
+    private isArrayReferenceField;
+    /**
+     * Find all Reference fields in a resource recursively
+     */
+    private findAllReferences;
+    /**
+     * Check if a reference can be resolved within the bundle
+     */
+    private canResolveReference;
+    /**
+     * FR-2.1: Validate all references in the bundle
+     * FR-2.2: Identifies references by Resource/id pattern and fullUrl references
+     * FR-2.3: Handles both relative and absolute references
+     * FR-2.4: Returns validation result with broken reference details
+     */
+    lookForBrokenReferences(): ValidationResult;
+    /**
+     * FR-3.1: Get resource by ID with type parameter support
+     * FR-3.2: Method searches both resource.id and entry.fullUrl for matches
+     * FR-3.4: Method returns undefined if resource not found
+     * FR-3.5: Lookup operates in O(1) time complexity
+     * FR-5.1: Returns smart resource with reference resolution methods
+     */
+    getResourceById<T extends Resource>(id: string): Smart<T> | undefined;
+    /**
+     * Generic helper method to get a resource by ID with type validation
+     */
+    private getResourceByIdAndType;
+    getPatientById: (id: string) => Smart<Patient> | undefined;
+    getObservationById: (id: string) => Smart<Observation> | undefined;
+    getEncounterById: (id: string) => Smart<Encounter> | undefined;
+    getAllergyIntoleranceById: (id: string) => Smart<AllergyIntolerance> | undefined;
+    getConditionById: (id: string) => Smart<Condition> | undefined;
+    getOrganizationById: (id: string) => Smart<Organization> | undefined;
+    getLocationById: (id: string) => Smart<Location> | undefined;
+    getPractitionerById: (id: string) => Smart<Practitioner> | undefined;
+    getDiagnosticReportById: (id: string) => Smart<DiagnosticReport> | undefined;
+    getCompositionById: (id: string) => Smart<Composition> | undefined;
+    getCoverageById: (id: string) => Smart<Coverage> | undefined;
+    getDocumentReferenceById: (id: string) => Smart<DocumentReference> | undefined;
+    getImmunizationById: (id: string) => Smart<Immunization> | undefined;
+    getMedicationById: (id: string) => Smart<Medication> | undefined;
+    getMedicationRequestById: (id: string) => Smart<MedicationRequest> | undefined;
+    getProcedureById: (id: string) => Smart<Procedure> | undefined;
+    getFamilyMemberHistoryById: (id: string) => Smart<FamilyMemberHistory> | undefined;
+    getMedicationAdministrationById: (id: string) => Smart<MedicationAdministration> | undefined;
+    getMedicationDispenseById: (id: string) => Smart<MedicationDispense> | undefined;
+    getMedicationStatementById: (id: string) => Smart<MedicationStatement> | undefined;
+    getRelatedPersonById: (id: string) => Smart<RelatedPerson> | undefined;
+    getRiskAssessmentById: (id: string) => Smart<RiskAssessment> | undefined;
+    getServiceRequestById: (id: string) => Smart<ServiceRequest> | undefined;
+    /**
+     * Generic helper method to get all resources of a specific type
+     * FR-10.1: Returns references to cached objects, not copies
+     */
+    private getResourcesByType;
+    getPatients: () => Smart<Patient>[];
+    getObservations: () => Smart<Observation>[];
+    getEncounters: () => Smart<Encounter>[];
+    getPractitioners: () => Smart<Practitioner>[];
+    getDiagnosticReports: () => Smart<DiagnosticReport>[];
+    getAllergyIntolerances: () => Smart<AllergyIntolerance>[];
+    getConditions: () => Smart<Condition>[];
+    getOrganizations: () => Smart<Organization>[];
+    getLocations: () => Smart<Location>[];
+    getCompositions: () => Smart<Composition>[];
+    getCoverages: () => Smart<Coverage>[];
+    getDocumentReferences: () => Smart<DocumentReference>[];
+    getImmunizations: () => Smart<Immunization>[];
+    getMedications: () => Smart<Medication>[];
+    getMedicationRequests: () => Smart<MedicationRequest>[];
+    getProcedures: () => Smart<Procedure>[];
+    getFamilyMemberHistories: () => Smart<FamilyMemberHistory>[];
+    getMedicationAdministrations: () => Smart<MedicationAdministration>[];
+    getMedicationDispenses: () => Smart<MedicationDispense>[];
+    getMedicationStatements: () => Smart<MedicationStatement>[];
+    getRelatedPersons: () => Smart<RelatedPerson>[];
+    getRiskAssessments: () => Smart<RiskAssessment>[];
+    getServiceRequests: () => Smart<ServiceRequest>[];
+    /**
+     * Create a new bundle entry from an existing entry, preserving fullUrl
+     */
+    private createBundleEntry;
+    /**
+     * Create a new bundle with specified entries, maintaining original metadata
+     */
+    private createExportBundle;
+    /**
+     * Find original bundle entry for a given resource
+     */
+    private findOriginalEntry;
+    /**
+     * FR-6.1: Export subset of resources by their IDs
+     * FR-6.4: Exported bundles maintain original bundle metadata but update total count
+     * FR-6.5: Exported bundles include only resources that exist in the original bundle
+     * FR-6.6: Exported bundles preserve original entry.fullUrl values
+     */
+    exportSubset(resourceIds: string[]): Bundle;
+    /**
+     * FR-6.2: Export all resources of a specific type
+     * FR-6.4: Exported bundles maintain original bundle metadata but update total count
+     * FR-6.6: Exported bundles preserve original entry.fullUrl values
+     */
+    exportByType(resourceType: string): Bundle;
+    /**
+     * FR-6.3: Export all resources of specified types
+     * FR-6.4: Exported bundles maintain original bundle metadata but update total count
+     * FR-6.6: Exported bundles preserve original entry.fullUrl values
+     */
+    exportByTypes(resourceTypes: string[]): Bundle;
+    /**
+     * Concatenate entries from another FhirBundleSdk with this bundle
+     * Returns a new bundle with combined entries while preserving original metadata
+     */
+    concatEntries(otherSdk: FhirBundleSdk): Promise<FhirBundleSdk>;
+    /**
+     * Diff this bundle with another FHIR Bundle by comparing resource ids.
+     * Returns three FhirBundleSdk instances: common, baseOnly, parameterOnly.
+     */
+    diff(other: Bundle): Promise<BundleDiffResult>;
+    /**
+     * Diff this bundle with another FhirBundleSdk by comparing resource ids.
+     * Returns three FhirBundleSdk instances: common, baseOnly, parameterOnly.
+     */
+    diff(other: FhirBundleSdk): Promise<BundleDiffResult>;
+}
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

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