@medplum/core 0.2.1 → 0.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (660) hide show
  1. package/README.md +32 -26
  2. package/dist/cjs/index.js +1818 -0
  3. package/dist/cjs/index.js.map +1 -0
  4. package/dist/cjs/index.min.js +16 -0
  5. package/dist/cjs/index.min.js.map +1 -0
  6. package/dist/esm/index.js +1769 -0
  7. package/dist/esm/index.js.map +1 -0
  8. package/dist/esm/index.min.js +16 -0
  9. package/dist/esm/index.min.js.map +1 -0
  10. package/dist/{cache.d.ts → types/cache.d.ts} +2 -3
  11. package/dist/types/client.d.ts +230 -0
  12. package/dist/{crypto.d.ts → types/crypto.d.ts} +0 -0
  13. package/dist/{eventtarget.d.ts → types/eventtarget.d.ts} +3 -3
  14. package/dist/{format.d.ts → types/format.d.ts} +1 -1
  15. package/dist/{index.d.ts → types/index.d.ts} +0 -2
  16. package/dist/types/jwt.d.ts +5 -0
  17. package/dist/{outcomes.d.ts → types/outcomes.d.ts} +7 -2
  18. package/dist/{search.d.ts → types/search.d.ts} +4 -0
  19. package/dist/{searchparams.d.ts → types/searchparams.d.ts} +1 -1
  20. package/dist/{storage.d.ts → types/storage.d.ts} +2 -2
  21. package/dist/{types.d.ts → types/types.d.ts} +18 -4
  22. package/dist/{utils.d.ts → types/utils.d.ts} +7 -1
  23. package/package.json +14 -9
  24. package/dist/cache.js +0 -36
  25. package/dist/cache.js.map +0 -1
  26. package/dist/client.d.ts +0 -233
  27. package/dist/client.js +0 -541
  28. package/dist/client.js.map +0 -1
  29. package/dist/crypto.js +0 -33
  30. package/dist/crypto.js.map +0 -1
  31. package/dist/eventtarget.js +0 -38
  32. package/dist/eventtarget.js.map +0 -1
  33. package/dist/fhir/AccessPolicy.d.ts +0 -75
  34. package/dist/fhir/AccessPolicy.js +0 -7
  35. package/dist/fhir/AccessPolicy.js.map +0 -1
  36. package/dist/fhir/Account.d.ts +0 -247
  37. package/dist/fhir/Account.js +0 -7
  38. package/dist/fhir/Account.js.map +0 -1
  39. package/dist/fhir/ActivityDefinition.d.ts +0 -500
  40. package/dist/fhir/ActivityDefinition.js +0 -7
  41. package/dist/fhir/ActivityDefinition.js.map +0 -1
  42. package/dist/fhir/Address.d.ts +0 -75
  43. package/dist/fhir/Address.js +0 -7
  44. package/dist/fhir/Address.js.map +0 -1
  45. package/dist/fhir/AdverseEvent.d.ts +0 -303
  46. package/dist/fhir/AdverseEvent.js +0 -7
  47. package/dist/fhir/AdverseEvent.js.map +0 -1
  48. package/dist/fhir/Age.d.ts +0 -47
  49. package/dist/fhir/Age.js +0 -7
  50. package/dist/fhir/Age.js.map +0 -1
  51. package/dist/fhir/AllergyIntolerance.d.ts +0 -283
  52. package/dist/fhir/AllergyIntolerance.js +0 -7
  53. package/dist/fhir/AllergyIntolerance.js.map +0 -1
  54. package/dist/fhir/Annotation.d.ts +0 -42
  55. package/dist/fhir/Annotation.js +0 -7
  56. package/dist/fhir/Annotation.js.map +0 -1
  57. package/dist/fhir/Appointment.d.ts +0 -284
  58. package/dist/fhir/Appointment.js +0 -7
  59. package/dist/fhir/Appointment.js.map +0 -1
  60. package/dist/fhir/AppointmentResponse.d.ts +0 -131
  61. package/dist/fhir/AppointmentResponse.js +0 -7
  62. package/dist/fhir/AppointmentResponse.js.map +0 -1
  63. package/dist/fhir/Attachment.d.ts +0 -58
  64. package/dist/fhir/Attachment.js +0 -7
  65. package/dist/fhir/Attachment.js.map +0 -1
  66. package/dist/fhir/AuditEvent.d.ts +0 -458
  67. package/dist/fhir/AuditEvent.js +0 -7
  68. package/dist/fhir/AuditEvent.js.map +0 -1
  69. package/dist/fhir/Basic.d.ts +0 -110
  70. package/dist/fhir/Basic.js +0 -7
  71. package/dist/fhir/Basic.js.map +0 -1
  72. package/dist/fhir/Binary.d.ts +0 -59
  73. package/dist/fhir/Binary.js +0 -7
  74. package/dist/fhir/Binary.js.map +0 -1
  75. package/dist/fhir/BiologicallyDerivedProduct.d.ts +0 -358
  76. package/dist/fhir/BiologicallyDerivedProduct.js +0 -7
  77. package/dist/fhir/BiologicallyDerivedProduct.js.map +0 -1
  78. package/dist/fhir/BodyStructure.d.ts +0 -119
  79. package/dist/fhir/BodyStructure.js +0 -7
  80. package/dist/fhir/BodyStructure.js.map +0 -1
  81. package/dist/fhir/Bot.d.ts +0 -49
  82. package/dist/fhir/Bot.js +0 -7
  83. package/dist/fhir/Bot.js.map +0 -1
  84. package/dist/fhir/Bundle.d.ts +0 -379
  85. package/dist/fhir/Bundle.js +0 -7
  86. package/dist/fhir/Bundle.js.map +0 -1
  87. package/dist/fhir/CapabilityStatement.d.ts +0 -1044
  88. package/dist/fhir/CapabilityStatement.js +0 -7
  89. package/dist/fhir/CapabilityStatement.js.map +0 -1
  90. package/dist/fhir/CarePlan.d.ts +0 -446
  91. package/dist/fhir/CarePlan.js +0 -7
  92. package/dist/fhir/CarePlan.js.map +0 -1
  93. package/dist/fhir/CareTeam.d.ts +0 -211
  94. package/dist/fhir/CareTeam.js +0 -7
  95. package/dist/fhir/CareTeam.js.map +0 -1
  96. package/dist/fhir/CatalogEntry.d.ts +0 -195
  97. package/dist/fhir/CatalogEntry.js +0 -7
  98. package/dist/fhir/CatalogEntry.js.map +0 -1
  99. package/dist/fhir/ChargeItem.d.ts +0 -287
  100. package/dist/fhir/ChargeItem.js +0 -7
  101. package/dist/fhir/ChargeItem.js.map +0 -1
  102. package/dist/fhir/ChargeItemDefinition.d.ts +0 -401
  103. package/dist/fhir/ChargeItemDefinition.js +0 -7
  104. package/dist/fhir/ChargeItemDefinition.js.map +0 -1
  105. package/dist/fhir/Claim.d.ts +0 -1092
  106. package/dist/fhir/Claim.js +0 -7
  107. package/dist/fhir/Claim.js.map +0 -1
  108. package/dist/fhir/ClaimResponse.d.ts +0 -1040
  109. package/dist/fhir/ClaimResponse.js +0 -7
  110. package/dist/fhir/ClaimResponse.js.map +0 -1
  111. package/dist/fhir/ClientApplication.d.ts +0 -46
  112. package/dist/fhir/ClientApplication.js +0 -7
  113. package/dist/fhir/ClientApplication.js.map +0 -1
  114. package/dist/fhir/ClinicalImpression.d.ts +0 -306
  115. package/dist/fhir/ClinicalImpression.js +0 -7
  116. package/dist/fhir/ClinicalImpression.js.map +0 -1
  117. package/dist/fhir/CodeSystem.d.ts +0 -541
  118. package/dist/fhir/CodeSystem.js +0 -7
  119. package/dist/fhir/CodeSystem.js.map +0 -1
  120. package/dist/fhir/CodeableConcept.d.ts +0 -33
  121. package/dist/fhir/CodeableConcept.js +0 -7
  122. package/dist/fhir/CodeableConcept.js.map +0 -1
  123. package/dist/fhir/Coding.d.ts +0 -50
  124. package/dist/fhir/Coding.js +0 -7
  125. package/dist/fhir/Coding.js.map +0 -1
  126. package/dist/fhir/Communication.d.ts +0 -264
  127. package/dist/fhir/Communication.js +0 -7
  128. package/dist/fhir/Communication.js.map +0 -1
  129. package/dist/fhir/CommunicationRequest.d.ts +0 -261
  130. package/dist/fhir/CommunicationRequest.js +0 -7
  131. package/dist/fhir/CommunicationRequest.js.map +0 -1
  132. package/dist/fhir/CompartmentDefinition.d.ts +0 -217
  133. package/dist/fhir/CompartmentDefinition.js +0 -7
  134. package/dist/fhir/CompartmentDefinition.js.map +0 -1
  135. package/dist/fhir/Composition.d.ts +0 -429
  136. package/dist/fhir/Composition.js +0 -7
  137. package/dist/fhir/Composition.js.map +0 -1
  138. package/dist/fhir/ConceptMap.d.ts +0 -518
  139. package/dist/fhir/ConceptMap.js +0 -7
  140. package/dist/fhir/ConceptMap.js.map +0 -1
  141. package/dist/fhir/Condition.d.ts +0 -326
  142. package/dist/fhir/Condition.js +0 -7
  143. package/dist/fhir/Condition.js.map +0 -1
  144. package/dist/fhir/Consent.d.ts +0 -460
  145. package/dist/fhir/Consent.js +0 -7
  146. package/dist/fhir/Consent.js.map +0 -1
  147. package/dist/fhir/ContactDetail.d.ts +0 -31
  148. package/dist/fhir/ContactDetail.js +0 -7
  149. package/dist/fhir/ContactDetail.js.map +0 -1
  150. package/dist/fhir/ContactPoint.d.ts +0 -47
  151. package/dist/fhir/ContactPoint.js +0 -7
  152. package/dist/fhir/ContactPoint.js.map +0 -1
  153. package/dist/fhir/Contract.d.ts +0 -1452
  154. package/dist/fhir/Contract.js +0 -7
  155. package/dist/fhir/Contract.js.map +0 -1
  156. package/dist/fhir/Contributor.d.ts +0 -37
  157. package/dist/fhir/Contributor.js +0 -7
  158. package/dist/fhir/Contributor.js.map +0 -1
  159. package/dist/fhir/Count.d.ts +0 -49
  160. package/dist/fhir/Count.js +0 -7
  161. package/dist/fhir/Count.js.map +0 -1
  162. package/dist/fhir/Coverage.d.ts +0 -327
  163. package/dist/fhir/Coverage.js +0 -7
  164. package/dist/fhir/Coverage.js.map +0 -1
  165. package/dist/fhir/CoverageEligibilityRequest.d.ts +0 -404
  166. package/dist/fhir/CoverageEligibilityRequest.js +0 -7
  167. package/dist/fhir/CoverageEligibilityRequest.js.map +0 -1
  168. package/dist/fhir/CoverageEligibilityResponse.d.ts +0 -434
  169. package/dist/fhir/CoverageEligibilityResponse.js +0 -7
  170. package/dist/fhir/CoverageEligibilityResponse.js.map +0 -1
  171. package/dist/fhir/DataRequirement.d.ts +0 -239
  172. package/dist/fhir/DataRequirement.js +0 -7
  173. package/dist/fhir/DataRequirement.js.map +0 -1
  174. package/dist/fhir/DetectedIssue.d.ts +0 -252
  175. package/dist/fhir/DetectedIssue.js +0 -7
  176. package/dist/fhir/DetectedIssue.js.map +0 -1
  177. package/dist/fhir/Device.d.ts +0 -493
  178. package/dist/fhir/Device.js +0 -7
  179. package/dist/fhir/Device.js.map +0 -1
  180. package/dist/fhir/DeviceDefinition.d.ts +0 -486
  181. package/dist/fhir/DeviceDefinition.js +0 -7
  182. package/dist/fhir/DeviceDefinition.js.map +0 -1
  183. package/dist/fhir/DeviceMetric.d.ts +0 -199
  184. package/dist/fhir/DeviceMetric.js +0 -7
  185. package/dist/fhir/DeviceMetric.js.map +0 -1
  186. package/dist/fhir/DeviceRequest.d.ts +0 -296
  187. package/dist/fhir/DeviceRequest.js +0 -7
  188. package/dist/fhir/DeviceRequest.js.map +0 -1
  189. package/dist/fhir/DeviceUseStatement.d.ts +0 -168
  190. package/dist/fhir/DeviceUseStatement.js +0 -7
  191. package/dist/fhir/DeviceUseStatement.js.map +0 -1
  192. package/dist/fhir/DiagnosticReport.d.ts +0 -254
  193. package/dist/fhir/DiagnosticReport.js +0 -7
  194. package/dist/fhir/DiagnosticReport.js.map +0 -1
  195. package/dist/fhir/Distance.d.ts +0 -47
  196. package/dist/fhir/Distance.js +0 -7
  197. package/dist/fhir/Distance.js.map +0 -1
  198. package/dist/fhir/DocumentManifest.d.ts +0 -196
  199. package/dist/fhir/DocumentManifest.js +0 -7
  200. package/dist/fhir/DocumentManifest.js.map +0 -1
  201. package/dist/fhir/DocumentReference.d.ts +0 -349
  202. package/dist/fhir/DocumentReference.js +0 -7
  203. package/dist/fhir/DocumentReference.js.map +0 -1
  204. package/dist/fhir/Dosage.d.ts +0 -152
  205. package/dist/fhir/Dosage.js +0 -7
  206. package/dist/fhir/Dosage.js.map +0 -1
  207. package/dist/fhir/Duration.d.ts +0 -46
  208. package/dist/fhir/Duration.js +0 -7
  209. package/dist/fhir/Duration.js.map +0 -1
  210. package/dist/fhir/EffectEvidenceSynthesis.d.ts +0 -591
  211. package/dist/fhir/EffectEvidenceSynthesis.js +0 -7
  212. package/dist/fhir/EffectEvidenceSynthesis.js.map +0 -1
  213. package/dist/fhir/Element.d.ts +0 -21
  214. package/dist/fhir/Element.js +0 -7
  215. package/dist/fhir/Element.js.map +0 -1
  216. package/dist/fhir/ElementDefinition.d.ts +0 -2701
  217. package/dist/fhir/ElementDefinition.js +0 -7
  218. package/dist/fhir/ElementDefinition.js.map +0 -1
  219. package/dist/fhir/Encounter.d.ts +0 -558
  220. package/dist/fhir/Encounter.js +0 -7
  221. package/dist/fhir/Encounter.js.map +0 -1
  222. package/dist/fhir/Endpoint.d.ts +0 -140
  223. package/dist/fhir/Endpoint.js +0 -7
  224. package/dist/fhir/Endpoint.js.map +0 -1
  225. package/dist/fhir/EnrollmentRequest.d.ts +0 -113
  226. package/dist/fhir/EnrollmentRequest.js +0 -7
  227. package/dist/fhir/EnrollmentRequest.js.map +0 -1
  228. package/dist/fhir/EnrollmentResponse.d.ts +0 -117
  229. package/dist/fhir/EnrollmentResponse.js +0 -7
  230. package/dist/fhir/EnrollmentResponse.js.map +0 -1
  231. package/dist/fhir/EpisodeOfCare.d.ts +0 -246
  232. package/dist/fhir/EpisodeOfCare.js +0 -7
  233. package/dist/fhir/EpisodeOfCare.js.map +0 -1
  234. package/dist/fhir/EventDefinition.d.ts +0 -253
  235. package/dist/fhir/EventDefinition.js +0 -7
  236. package/dist/fhir/EventDefinition.js.map +0 -1
  237. package/dist/fhir/Evidence.d.ts +0 -252
  238. package/dist/fhir/Evidence.js +0 -7
  239. package/dist/fhir/Evidence.js.map +0 -1
  240. package/dist/fhir/EvidenceVariable.d.ts +0 -370
  241. package/dist/fhir/EvidenceVariable.js +0 -7
  242. package/dist/fhir/EvidenceVariable.js.map +0 -1
  243. package/dist/fhir/ExampleScenario.d.ts +0 -628
  244. package/dist/fhir/ExampleScenario.js +0 -7
  245. package/dist/fhir/ExampleScenario.js.map +0 -1
  246. package/dist/fhir/ExplanationOfBenefit.d.ts +0 -1841
  247. package/dist/fhir/ExplanationOfBenefit.js +0 -7
  248. package/dist/fhir/ExplanationOfBenefit.js.map +0 -1
  249. package/dist/fhir/Expression.d.ts +0 -45
  250. package/dist/fhir/Expression.js +0 -7
  251. package/dist/fhir/Expression.js.map +0 -1
  252. package/dist/fhir/Extension.d.ts +0 -306
  253. package/dist/fhir/Extension.js +0 -7
  254. package/dist/fhir/Extension.js.map +0 -1
  255. package/dist/fhir/FamilyMemberHistory.d.ts +0 -306
  256. package/dist/fhir/FamilyMemberHistory.js +0 -7
  257. package/dist/fhir/FamilyMemberHistory.js.map +0 -1
  258. package/dist/fhir/Flag.d.ts +0 -132
  259. package/dist/fhir/Flag.js +0 -7
  260. package/dist/fhir/Flag.js.map +0 -1
  261. package/dist/fhir/Goal.d.ts +0 -299
  262. package/dist/fhir/Goal.js +0 -7
  263. package/dist/fhir/Goal.js.map +0 -1
  264. package/dist/fhir/GraphDefinition.d.ts +0 -350
  265. package/dist/fhir/GraphDefinition.js +0 -7
  266. package/dist/fhir/GraphDefinition.js.map +0 -1
  267. package/dist/fhir/Group.d.ts +0 -271
  268. package/dist/fhir/Group.js +0 -7
  269. package/dist/fhir/Group.js.map +0 -1
  270. package/dist/fhir/GuidanceResponse.d.ts +0 -196
  271. package/dist/fhir/GuidanceResponse.js +0 -7
  272. package/dist/fhir/GuidanceResponse.js.map +0 -1
  273. package/dist/fhir/HealthcareService.d.ts +0 -356
  274. package/dist/fhir/HealthcareService.js +0 -7
  275. package/dist/fhir/HealthcareService.js.map +0 -1
  276. package/dist/fhir/HumanName.d.ts +0 -58
  277. package/dist/fhir/HumanName.js +0 -7
  278. package/dist/fhir/HumanName.js.map +0 -1
  279. package/dist/fhir/Identifier.d.ts +0 -53
  280. package/dist/fhir/Identifier.js +0 -7
  281. package/dist/fhir/Identifier.js.map +0 -1
  282. package/dist/fhir/ImagingStudy.d.ts +0 -407
  283. package/dist/fhir/ImagingStudy.js +0 -7
  284. package/dist/fhir/ImagingStudy.js.map +0 -1
  285. package/dist/fhir/Immunization.d.ts +0 -444
  286. package/dist/fhir/Immunization.js +0 -7
  287. package/dist/fhir/Immunization.js.map +0 -1
  288. package/dist/fhir/ImmunizationEvaluation.d.ts +0 -149
  289. package/dist/fhir/ImmunizationEvaluation.js +0 -7
  290. package/dist/fhir/ImmunizationEvaluation.js.map +0 -1
  291. package/dist/fhir/ImmunizationRecommendation.d.ts +0 -254
  292. package/dist/fhir/ImmunizationRecommendation.js +0 -7
  293. package/dist/fhir/ImmunizationRecommendation.js.map +0 -1
  294. package/dist/fhir/ImplementationGuide.d.ts +0 -824
  295. package/dist/fhir/ImplementationGuide.js +0 -7
  296. package/dist/fhir/ImplementationGuide.js.map +0 -1
  297. package/dist/fhir/InsurancePlan.d.ts +0 -624
  298. package/dist/fhir/InsurancePlan.js +0 -7
  299. package/dist/fhir/InsurancePlan.js.map +0 -1
  300. package/dist/fhir/Invoice.d.ts +0 -346
  301. package/dist/fhir/Invoice.js +0 -7
  302. package/dist/fhir/Invoice.js.map +0 -1
  303. package/dist/fhir/JsonWebKey.d.ts +0 -99
  304. package/dist/fhir/JsonWebKey.js +0 -7
  305. package/dist/fhir/JsonWebKey.js.map +0 -1
  306. package/dist/fhir/Library.d.ts +0 -277
  307. package/dist/fhir/Library.js +0 -7
  308. package/dist/fhir/Library.js.map +0 -1
  309. package/dist/fhir/Linkage.d.ts +0 -146
  310. package/dist/fhir/Linkage.js +0 -7
  311. package/dist/fhir/Linkage.js.map +0 -1
  312. package/dist/fhir/List.d.ts +0 -200
  313. package/dist/fhir/List.js +0 -7
  314. package/dist/fhir/List.js.map +0 -1
  315. package/dist/fhir/Location.d.ts +0 -277
  316. package/dist/fhir/Location.js +0 -7
  317. package/dist/fhir/Location.js.map +0 -1
  318. package/dist/fhir/Login.d.ts +0 -119
  319. package/dist/fhir/Login.js +0 -7
  320. package/dist/fhir/Login.js.map +0 -1
  321. package/dist/fhir/MarketingStatus.d.ts +0 -82
  322. package/dist/fhir/MarketingStatus.js +0 -7
  323. package/dist/fhir/MarketingStatus.js.map +0 -1
  324. package/dist/fhir/Measure.d.ts +0 -620
  325. package/dist/fhir/Measure.js +0 -7
  326. package/dist/fhir/Measure.js.map +0 -1
  327. package/dist/fhir/MeasureReport.d.ts +0 -463
  328. package/dist/fhir/MeasureReport.js +0 -7
  329. package/dist/fhir/MeasureReport.js.map +0 -1
  330. package/dist/fhir/Media.d.ts +0 -205
  331. package/dist/fhir/Media.js +0 -7
  332. package/dist/fhir/Media.js.map +0 -1
  333. package/dist/fhir/Medication.d.ts +0 -230
  334. package/dist/fhir/Medication.js +0 -7
  335. package/dist/fhir/Medication.js.map +0 -1
  336. package/dist/fhir/MedicationAdministration.d.ts +0 -352
  337. package/dist/fhir/MedicationAdministration.js +0 -7
  338. package/dist/fhir/MedicationAdministration.js.map +0 -1
  339. package/dist/fhir/MedicationDispense.d.ts +0 -343
  340. package/dist/fhir/MedicationDispense.js +0 -7
  341. package/dist/fhir/MedicationDispense.js.map +0 -1
  342. package/dist/fhir/MedicationKnowledge.d.ts +0 -992
  343. package/dist/fhir/MedicationKnowledge.js +0 -7
  344. package/dist/fhir/MedicationKnowledge.js.map +0 -1
  345. package/dist/fhir/MedicationRequest.d.ts +0 -481
  346. package/dist/fhir/MedicationRequest.js +0 -7
  347. package/dist/fhir/MedicationRequest.js.map +0 -1
  348. package/dist/fhir/MedicationStatement.d.ts +0 -228
  349. package/dist/fhir/MedicationStatement.js +0 -7
  350. package/dist/fhir/MedicationStatement.js.map +0 -1
  351. package/dist/fhir/MedicinalProduct.d.ts +0 -453
  352. package/dist/fhir/MedicinalProduct.js +0 -7
  353. package/dist/fhir/MedicinalProduct.js.map +0 -1
  354. package/dist/fhir/MedicinalProductAuthorization.d.ts +0 -271
  355. package/dist/fhir/MedicinalProductAuthorization.js +0 -7
  356. package/dist/fhir/MedicinalProductAuthorization.js.map +0 -1
  357. package/dist/fhir/MedicinalProductContraindication.d.ts +0 -170
  358. package/dist/fhir/MedicinalProductContraindication.js +0 -7
  359. package/dist/fhir/MedicinalProductContraindication.js.map +0 -1
  360. package/dist/fhir/MedicinalProductIndication.d.ts +0 -179
  361. package/dist/fhir/MedicinalProductIndication.js +0 -7
  362. package/dist/fhir/MedicinalProductIndication.js.map +0 -1
  363. package/dist/fhir/MedicinalProductIngredient.d.ts +0 -336
  364. package/dist/fhir/MedicinalProductIngredient.js +0 -7
  365. package/dist/fhir/MedicinalProductIngredient.js.map +0 -1
  366. package/dist/fhir/MedicinalProductInteraction.d.ts +0 -158
  367. package/dist/fhir/MedicinalProductInteraction.js +0 -7
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- {"version":3,"file":"MolecularSequence.js","sourceRoot":"","sources":["../../src/fhir/MolecularSequence.ts"],"names":[],"mappings":";AAAA;;;GAGG","sourcesContent":["/*\n * Generated by @medplum/generator\n * Do not edit manually.\n */\n\nimport { CodeableConcept } from './CodeableConcept';\nimport { Device } from './Device';\nimport { Extension } from './Extension';\nimport { Identifier } from './Identifier';\nimport { Meta } from './Meta';\nimport { Narrative } from './Narrative';\nimport { Observation } from './Observation';\nimport { Organization } from './Organization';\nimport { Patient } from './Patient';\nimport { Quantity } from './Quantity';\nimport { Reference } from './Reference';\nimport { Resource } from './Resource';\nimport { Specimen } from './Specimen';\n\n/**\n * Raw data describing a biological sequence.\n */\nexport interface MolecularSequence {\n\n /**\n * This is a MolecularSequence resource\n */\n readonly resourceType: 'MolecularSequence';\n\n /**\n * The logical id of the resource, as used in the URL for the resource.\n * Once assigned, this value never changes.\n */\n readonly id?: string;\n\n /**\n * The metadata about the resource. This is content that is maintained by\n * the infrastructure. Changes to the content might not always be\n * associated with version changes to the resource.\n */\n readonly meta?: Meta;\n\n /**\n * A reference to a set of rules that were followed when the resource was\n * constructed, and which must be understood when processing the content.\n * Often, this is a reference to an implementation guide that defines the\n * special rules along with other profiles etc.\n */\n readonly implicitRules?: string;\n\n /**\n * The base language in which the resource is written.\n */\n readonly language?: string;\n\n /**\n * A human-readable narrative that contains a summary of the resource and\n * can be used to represent the content of the resource to a human. The\n * narrative need not encode all the structured data, but is required to\n * contain sufficient detail to make it &quot;clinically safe&quot; for a human to\n * just read the narrative. Resource definitions may define what content\n * should be represented in the narrative to ensure clinical safety.\n */\n readonly text?: Narrative;\n\n /**\n * These resources do not have an independent existence apart from the\n * resource that contains them - they cannot be identified independently,\n * and nor can they have their own independent transaction scope.\n */\n readonly contained?: Resource[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the resource. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the resource and that modifies the\n * understanding of the element that contains it and/or the understanding\n * of the containing element's descendants. Usually modifier elements\n * provide negation or qualification. To make the use of extensions safe\n * and manageable, there is a strict set of governance applied to the\n * definition and use of extensions. Though any implementer is allowed to\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension. Applications processing a\n * resource are required to check for modifier extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * A unique identifier for this particular sequence instance. This is a\n * FHIR-defined id.\n */\n readonly identifier?: Identifier[];\n\n /**\n * Amino Acid Sequence/ DNA Sequence / RNA Sequence.\n */\n readonly type?: string;\n\n /**\n * Whether the sequence is numbered starting at 0 (0-based numbering or\n * coordinates, inclusive start, exclusive end) or starting at 1 (1-based\n * numbering, inclusive start and inclusive end).\n */\n readonly coordinateSystem?: number;\n\n /**\n * The patient whose sequencing results are described by this resource.\n */\n readonly patient?: Reference<Patient>;\n\n /**\n * Specimen used for sequencing.\n */\n readonly specimen?: Reference<Specimen>;\n\n /**\n * The method for sequencing, for example, chip information.\n */\n readonly device?: Reference<Device>;\n\n /**\n * The organization or lab that should be responsible for this result.\n */\n readonly performer?: Reference<Organization>;\n\n /**\n * The number of copies of the sequence of interest. (RNASeq).\n */\n readonly quantity?: Quantity;\n\n /**\n * A sequence that is used as a reference to describe variants that are\n * present in a sequence analyzed.\n */\n readonly referenceSeq?: MolecularSequenceReferenceSeq;\n\n /**\n * The definition of variant here originates from Sequence ontology\n * ([variant_of](http://www.sequenceontology.org/browser/current_svn/term/variant_of)).\n * This element can represent amino acid or nucleic sequence\n * change(including insertion,deletion,SNP,etc.) It can represent some\n * complex mutation or segment variation with the assist of CIGAR string.\n */\n readonly variant?: MolecularSequenceVariant[];\n\n /**\n * Sequence that was observed. It is the result marked by referenceSeq\n * along with variant records on referenceSeq. This shall start from\n * referenceSeq.windowStart and end by referenceSeq.windowEnd.\n */\n readonly observedSeq?: string;\n\n /**\n * An experimental feature attribute that defines the quality of the\n * feature in a quantitative way, such as a phred quality score\n * ([SO:0001686](http://www.sequenceontology.org/browser/current_svn/term/SO:0001686)).\n */\n readonly quality?: MolecularSequenceQuality[];\n\n /**\n * Coverage (read depth or depth) is the average number of reads\n * representing a given nucleotide in the reconstructed sequence.\n */\n readonly readCoverage?: number;\n\n /**\n * Configurations of the external repository. The repository shall store\n * target's observedSeq or records related with target's observedSeq.\n */\n readonly repository?: MolecularSequenceRepository[];\n\n /**\n * Pointer to next atomic sequence which at most contains one variant.\n */\n readonly pointer?: Reference<MolecularSequence>[];\n\n /**\n * Information about chromosome structure variation.\n */\n readonly structureVariant?: MolecularSequenceStructureVariant[];\n}\n\n/**\n * An experimental feature attribute that defines the quality of the\n * feature in a quantitative way, such as a phred quality score\n * ([SO:0001686](http://www.sequenceontology.org/browser/current_svn/term/SO:0001686)).\n */\nexport interface MolecularSequenceQuality {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element and that modifies the\n * understanding of the element in which it is contained and/or the\n * understanding of the containing element's descendants. Usually\n * modifier elements provide negation or qualification. To make the use\n * of extensions safe and manageable, there is a strict set of governance\n * applied to the definition and use of extensions. Though any\n * implementer can define an extension, there is a set of requirements\n * that SHALL be met as part of the definition of the extension.\n * Applications processing a resource are required to check for modifier\n * extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * INDEL / SNP / Undefined variant.\n */\n readonly type?: string;\n\n /**\n * Gold standard sequence used for comparing against.\n */\n readonly standardSequence?: CodeableConcept;\n\n /**\n * Start position of the sequence. If the coordinate system is either\n * 0-based or 1-based, then start position is inclusive.\n */\n readonly start?: number;\n\n /**\n * End position of the sequence. If the coordinate system is 0-based then\n * end is exclusive and does not include the last position. If the\n * coordinate system is 1-base, then end is inclusive and includes the\n * last position.\n */\n readonly end?: number;\n\n /**\n * The score of an experimentally derived feature such as a p-value\n * ([SO:0001685](http://www.sequenceontology.org/browser/current_svn/term/SO:0001685)).\n */\n readonly score?: Quantity;\n\n /**\n * Which method is used to get sequence quality.\n */\n readonly method?: CodeableConcept;\n\n /**\n * True positives, from the perspective of the truth data, i.e. the\n * number of sites in the Truth Call Set for which there are paths\n * through the Query Call Set that are consistent with all of the alleles\n * at this site, and for which there is an accurate genotype call for the\n * event.\n */\n readonly truthTP?: number;\n\n /**\n * True positives, from the perspective of the query data, i.e. the\n * number of sites in the Query Call Set for which there are paths\n * through the Truth Call Set that are consistent with all of the alleles\n * at this site, and for which there is an accurate genotype call for the\n * event.\n */\n readonly queryTP?: number;\n\n /**\n * False negatives, i.e. the number of sites in the Truth Call Set for\n * which there is no path through the Query Call Set that is consistent\n * with all of the alleles at this site, or sites for which there is an\n * inaccurate genotype call for the event. Sites with correct variant but\n * incorrect genotype are counted here.\n */\n readonly truthFN?: number;\n\n /**\n * False positives, i.e. the number of sites in the Query Call Set for\n * which there is no path through the Truth Call Set that is consistent\n * with this site. Sites with correct variant but incorrect genotype are\n * counted here.\n */\n readonly queryFP?: number;\n\n /**\n * The number of false positives where the non-REF alleles in the Truth\n * and Query Call Sets match (i.e. cases where the truth is 1/1 and the\n * query is 0/1 or similar).\n */\n readonly gtFP?: number;\n\n /**\n * QUERY.TP / (QUERY.TP + QUERY.FP).\n */\n readonly precision?: number;\n\n /**\n * TRUTH.TP / (TRUTH.TP + TRUTH.FN).\n */\n readonly recall?: number;\n\n /**\n * Harmonic mean of Recall and Precision, computed as: 2 * precision *\n * recall / (precision + recall).\n */\n readonly fScore?: number;\n\n /**\n * Receiver Operator Characteristic (ROC) Curve to give\n * sensitivity/specificity tradeoff.\n */\n readonly roc?: MolecularSequenceQualityRoc;\n}\n\n/**\n * Receiver Operator Characteristic (ROC) Curve to give\n * sensitivity/specificity tradeoff.\n */\nexport interface MolecularSequenceQualityRoc {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element and that modifies the\n * understanding of the element in which it is contained and/or the\n * understanding of the containing element's descendants. Usually\n * modifier elements provide negation or qualification. To make the use\n * of extensions safe and manageable, there is a strict set of governance\n * applied to the definition and use of extensions. Though any\n * implementer can define an extension, there is a set of requirements\n * that SHALL be met as part of the definition of the extension.\n * Applications processing a resource are required to check for modifier\n * extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * Invidual data point representing the GQ (genotype quality) score\n * threshold.\n */\n readonly score?: number[];\n\n /**\n * The number of true positives if the GQ score threshold was set to\n * &quot;score&quot; field value.\n */\n readonly numTP?: number[];\n\n /**\n * The number of false positives if the GQ score threshold was set to\n * &quot;score&quot; field value.\n */\n readonly numFP?: number[];\n\n /**\n * The number of false negatives if the GQ score threshold was set to\n * &quot;score&quot; field value.\n */\n readonly numFN?: number[];\n\n /**\n * Calculated precision if the GQ score threshold was set to &quot;score&quot;\n * field value.\n */\n readonly precision?: number[];\n\n /**\n * Calculated sensitivity if the GQ score threshold was set to &quot;score&quot;\n * field value.\n */\n readonly sensitivity?: number[];\n\n /**\n * Calculated fScore if the GQ score threshold was set to &quot;score&quot; field\n * value.\n */\n readonly fMeasure?: number[];\n}\n\n/**\n * A sequence that is used as a reference to describe variants that are\n * present in a sequence analyzed.\n */\nexport interface MolecularSequenceReferenceSeq {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element and that modifies the\n * understanding of the element in which it is contained and/or the\n * understanding of the containing element's descendants. Usually\n * modifier elements provide negation or qualification. To make the use\n * of extensions safe and manageable, there is a strict set of governance\n * applied to the definition and use of extensions. Though any\n * implementer can define an extension, there is a set of requirements\n * that SHALL be met as part of the definition of the extension.\n * Applications processing a resource are required to check for modifier\n * extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * Structural unit composed of a nucleic acid molecule which controls its\n * own replication through the interaction of specific proteins at one or\n * more origins of replication\n * ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).\n */\n readonly chromosome?: CodeableConcept;\n\n /**\n * The Genome Build used for reference, following GRCh build versions\n * e.g. 'GRCh 37'. Version number must be included if a versioned\n * release of a primary build was used.\n */\n readonly genomeBuild?: string;\n\n /**\n * A relative reference to a DNA strand based on gene orientation. The\n * strand that contains the open reading frame of the gene is the &quot;sense&quot;\n * strand, and the opposite complementary strand is the &quot;antisense&quot;\n * strand.\n */\n readonly orientation?: string;\n\n /**\n * Reference identifier of reference sequence submitted to NCBI. It must\n * match the type in the MolecularSequence.type field. For example, the\n * prefix, &ldquo;NG_&rdquo; identifies reference sequence for genes, &ldquo;NM_&rdquo; for\n * messenger RNA transcripts, and &ldquo;NP_&rdquo; for amino acid sequences.\n */\n readonly referenceSeqId?: CodeableConcept;\n\n /**\n * A pointer to another MolecularSequence entity as reference sequence.\n */\n readonly referenceSeqPointer?: Reference<MolecularSequence>;\n\n /**\n * A string like &quot;ACGT&quot;.\n */\n readonly referenceSeqString?: string;\n\n /**\n * An absolute reference to a strand. The Watson strand is the strand\n * whose 5'-end is on the short arm of the chromosome, and the Crick\n * strand as the one whose 5'-end is on the long arm.\n */\n readonly strand?: string;\n\n /**\n * Start position of the window on the reference sequence. If the\n * coordinate system is either 0-based or 1-based, then start position is\n * inclusive.\n */\n readonly windowStart?: number;\n\n /**\n * End position of the window on the reference sequence. If the\n * coordinate system is 0-based then end is exclusive and does not\n * include the last position. If the coordinate system is 1-base, then\n * end is inclusive and includes the last position.\n */\n readonly windowEnd?: number;\n}\n\n/**\n * Configurations of the external repository. The repository shall store\n * target's observedSeq or records related with target's observedSeq.\n */\nexport interface MolecularSequenceRepository {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element and that modifies the\n * understanding of the element in which it is contained and/or the\n * understanding of the containing element's descendants. Usually\n * modifier elements provide negation or qualification. To make the use\n * of extensions safe and manageable, there is a strict set of governance\n * applied to the definition and use of extensions. Though any\n * implementer can define an extension, there is a set of requirements\n * that SHALL be met as part of the definition of the extension.\n * Applications processing a resource are required to check for modifier\n * extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * Click and see / RESTful API / Need login to see / RESTful API with\n * authentication / Other ways to see resource.\n */\n readonly type?: string;\n\n /**\n * URI of an external repository which contains further details about the\n * genetics data.\n */\n readonly url?: string;\n\n /**\n * URI of an external repository which contains further details about the\n * genetics data.\n */\n readonly name?: string;\n\n /**\n * Id of the variant in this external repository. The server will\n * understand how to use this id to call for more info about datasets in\n * external repository.\n */\n readonly datasetId?: string;\n\n /**\n * Id of the variantset in this external repository. The server will\n * understand how to use this id to call for more info about variantsets\n * in external repository.\n */\n readonly variantsetId?: string;\n\n /**\n * Id of the read in this external repository.\n */\n readonly readsetId?: string;\n}\n\n/**\n * Information about chromosome structure variation.\n */\nexport interface MolecularSequenceStructureVariant {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element and that modifies the\n * understanding of the element in which it is contained and/or the\n * understanding of the containing element's descendants. Usually\n * modifier elements provide negation or qualification. To make the use\n * of extensions safe and manageable, there is a strict set of governance\n * applied to the definition and use of extensions. Though any\n * implementer can define an extension, there is a set of requirements\n * that SHALL be met as part of the definition of the extension.\n * Applications processing a resource are required to check for modifier\n * extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * Information about chromosome structure variation DNA change type.\n */\n readonly variantType?: CodeableConcept;\n\n /**\n * Used to indicate if the outer and inner start-end values have the same\n * meaning.\n */\n readonly exact?: boolean;\n\n /**\n * Length of the variant chromosome.\n */\n readonly length?: number;\n\n /**\n * Structural variant outer.\n */\n readonly outer?: MolecularSequenceStructureVariantOuter;\n\n /**\n * Structural variant inner.\n */\n readonly inner?: MolecularSequenceStructureVariantInner;\n}\n\n/**\n * Structural variant inner.\n */\nexport interface MolecularSequenceStructureVariantInner {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element and that modifies the\n * understanding of the element in which it is contained and/or the\n * understanding of the containing element's descendants. Usually\n * modifier elements provide negation or qualification. To make the use\n * of extensions safe and manageable, there is a strict set of governance\n * applied to the definition and use of extensions. Though any\n * implementer can define an extension, there is a set of requirements\n * that SHALL be met as part of the definition of the extension.\n * Applications processing a resource are required to check for modifier\n * extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * Structural variant inner start. If the coordinate system is either\n * 0-based or 1-based, then start position is inclusive.\n */\n readonly start?: number;\n\n /**\n * Structural variant inner end. If the coordinate system is 0-based then\n * end is exclusive and does not include the last position. If the\n * coordinate system is 1-base, then end is inclusive and includes the\n * last position.\n */\n readonly end?: number;\n}\n\n/**\n * Structural variant outer.\n */\nexport interface MolecularSequenceStructureVariantOuter {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element and that modifies the\n * understanding of the element in which it is contained and/or the\n * understanding of the containing element's descendants. Usually\n * modifier elements provide negation or qualification. To make the use\n * of extensions safe and manageable, there is a strict set of governance\n * applied to the definition and use of extensions. Though any\n * implementer can define an extension, there is a set of requirements\n * that SHALL be met as part of the definition of the extension.\n * Applications processing a resource are required to check for modifier\n * extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * Structural variant outer start. If the coordinate system is either\n * 0-based or 1-based, then start position is inclusive.\n */\n readonly start?: number;\n\n /**\n * Structural variant outer end. If the coordinate system is 0-based then\n * end is exclusive and does not include the last position. If the\n * coordinate system is 1-base, then end is inclusive and includes the\n * last position.\n */\n readonly end?: number;\n}\n\n/**\n * The definition of variant here originates from Sequence ontology\n * ([variant_of](http://www.sequenceontology.org/browser/current_svn/term/variant_of)).\n * This element can represent amino acid or nucleic sequence\n * change(including insertion,deletion,SNP,etc.) It can represent some\n * complex mutation or segment variation with the assist of CIGAR string.\n */\nexport interface MolecularSequenceVariant {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element and that modifies the\n * understanding of the element in which it is contained and/or the\n * understanding of the containing element's descendants. Usually\n * modifier elements provide negation or qualification. To make the use\n * of extensions safe and manageable, there is a strict set of governance\n * applied to the definition and use of extensions. Though any\n * implementer can define an extension, there is a set of requirements\n * that SHALL be met as part of the definition of the extension.\n * Applications processing a resource are required to check for modifier\n * extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * Start position of the variant on the reference sequence. If the\n * coordinate system is either 0-based or 1-based, then start position is\n * inclusive.\n */\n readonly start?: number;\n\n /**\n * End position of the variant on the reference sequence. If the\n * coordinate system is 0-based then end is exclusive and does not\n * include the last position. If the coordinate system is 1-base, then\n * end is inclusive and includes the last position.\n */\n readonly end?: number;\n\n /**\n * An allele is one of a set of coexisting sequence variants of a gene\n * ([SO:0001023](http://www.sequenceontology.org/browser/current_svn/term/SO:0001023)).\n * Nucleotide(s)/amino acids from start position of sequence to stop\n * position of sequence on the positive (+) strand of the observed\n * sequence. When the sequence type is DNA, it should be the sequence on\n * the positive (+) strand. This will lay in the range between\n * variant.start and variant.end.\n */\n readonly observedAllele?: string;\n\n /**\n * An allele is one of a set of coexisting sequence variants of a gene\n * ([SO:0001023](http://www.sequenceontology.org/browser/current_svn/term/SO:0001023)).\n * Nucleotide(s)/amino acids from start position of sequence to stop\n * position of sequence on the positive (+) strand of the reference\n * sequence. When the sequence type is DNA, it should be the sequence on\n * the positive (+) strand. This will lay in the range between\n * variant.start and variant.end.\n */\n readonly referenceAllele?: string;\n\n /**\n * Extended CIGAR string for aligning the sequence with reference bases.\n * See detailed documentation\n * [here](http://support.illumina.com/help/SequencingAnalysisWorkflow/Content/Vault/Informatics/Sequencing_Analysis/CASAVA/swSEQ_mCA_ExtendedCIGARFormat.htm).\n */\n readonly cigar?: string;\n\n /**\n * A pointer to an Observation containing variant information.\n */\n readonly variantPointer?: Reference<Observation>;\n}\n"]}
@@ -1,29 +0,0 @@
1
- import { Extension } from './Extension';
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- /**
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- * Base StructureDefinition for Money Type: An amount of economic utility
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- * in some recognized currency.
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- */
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- export interface Money {
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- /**
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- * Unique id for the element within a resource (for internal references).
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- * This may be any string value that does not contain spaces.
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- */
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- readonly id?: string;
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- /**
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- * May be used to represent additional information that is not part of
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- * the basic definition of the element. To make the use of extensions
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- * safe and manageable, there is a strict set of governance applied to
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- * the definition and use of extensions. Though any implementer can
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- * define an extension, there is a set of requirements that SHALL be met
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- * as part of the definition of the extension.
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- */
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- readonly extension?: Extension[];
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- /**
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- * Numerical value (with implicit precision).
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- */
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- readonly value?: number;
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- /**
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- * ISO 4217 Currency Code.
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- */
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- readonly currency?: string;
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- }
@@ -1,7 +0,0 @@
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- "use strict";
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- /*
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- * Generated by @medplum/generator
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- * Do not edit manually.
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- */
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- Object.defineProperty(exports, "__esModule", { value: true });
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- //# sourceMappingURL=Money.js.map
@@ -1 +0,0 @@
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- {"version":3,"file":"Money.js","sourceRoot":"","sources":["../../src/fhir/Money.ts"],"names":[],"mappings":";AAAA;;;GAGG","sourcesContent":["/*\n * Generated by @medplum/generator\n * Do not edit manually.\n */\n\nimport { Extension } from './Extension';\n\n/**\n * Base StructureDefinition for Money Type: An amount of economic utility\n * in some recognized currency.\n */\nexport interface Money {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * Numerical value (with implicit precision).\n */\n readonly value?: number;\n\n /**\n * ISO 4217 Currency Code.\n */\n readonly currency?: string;\n}\n"]}
@@ -1,218 +0,0 @@
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- import { CodeableConcept } from './CodeableConcept';
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- import { ContactDetail } from './ContactDetail';
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- import { Extension } from './Extension';
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- import { Meta } from './Meta';
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- import { Narrative } from './Narrative';
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- import { Period } from './Period';
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- import { Resource } from './Resource';
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- import { UsageContext } from './UsageContext';
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- /**
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- * A curated namespace that issues unique symbols within that namespace
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- * for the identification of concepts, people, devices, etc. Represents
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- * a &quot;System&quot; used within the Identifier and Coding data types.
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- */
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- export interface NamingSystem {
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- /**
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- * This is a NamingSystem resource
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- */
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- readonly resourceType: 'NamingSystem';
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- /**
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- * The logical id of the resource, as used in the URL for the resource.
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- * Once assigned, this value never changes.
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- */
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- readonly id?: string;
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- /**
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- * The metadata about the resource. This is content that is maintained by
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- * the infrastructure. Changes to the content might not always be
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- * associated with version changes to the resource.
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- */
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- readonly meta?: Meta;
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- /**
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- * A reference to a set of rules that were followed when the resource was
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- * constructed, and which must be understood when processing the content.
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- * Often, this is a reference to an implementation guide that defines the
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- * special rules along with other profiles etc.
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- */
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- readonly implicitRules?: string;
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- /**
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- * The base language in which the resource is written.
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- */
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- readonly language?: string;
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- /**
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- * A human-readable narrative that contains a summary of the resource and
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- * can be used to represent the content of the resource to a human. The
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- * narrative need not encode all the structured data, but is required to
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- * contain sufficient detail to make it &quot;clinically safe&quot; for a human to
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- * just read the narrative. Resource definitions may define what content
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- * should be represented in the narrative to ensure clinical safety.
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- */
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- readonly text?: Narrative;
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- /**
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- * These resources do not have an independent existence apart from the
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- * resource that contains them - they cannot be identified independently,
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- * and nor can they have their own independent transaction scope.
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- */
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- readonly contained?: Resource[];
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- /**
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- * May be used to represent additional information that is not part of
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- * the basic definition of the resource. To make the use of extensions
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- * safe and manageable, there is a strict set of governance applied to
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- * the definition and use of extensions. Though any implementer can
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- * define an extension, there is a set of requirements that SHALL be met
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- * as part of the definition of the extension.
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- */
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- readonly extension?: Extension[];
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- /**
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- * May be used to represent additional information that is not part of
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- * the basic definition of the resource and that modifies the
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- * understanding of the element that contains it and/or the understanding
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- * of the containing element's descendants. Usually modifier elements
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- * provide negation or qualification. To make the use of extensions safe
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- * and manageable, there is a strict set of governance applied to the
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- * definition and use of extensions. Though any implementer is allowed to
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- * define an extension, there is a set of requirements that SHALL be met
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- * as part of the definition of the extension. Applications processing a
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- * resource are required to check for modifier extensions.
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- *
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- * Modifier extensions SHALL NOT change the meaning of any elements on
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- * Resource or DomainResource (including cannot change the meaning of
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- * modifierExtension itself).
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- */
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- readonly modifierExtension?: Extension[];
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- /**
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- * A natural language name identifying the naming system. This name
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- * should be usable as an identifier for the module by machine processing
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- * applications such as code generation.
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- */
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- readonly name?: string;
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- /**
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- * The status of this naming system. Enables tracking the life-cycle of
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- * the content.
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- */
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- readonly status?: string;
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- /**
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- * Indicates the purpose for the naming system - what kinds of things
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- * does it make unique?
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- */
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- readonly kind?: string;
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- /**
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- * The date (and optionally time) when the naming system was published.
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- * The date must change when the business version changes and it must
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- * change if the status code changes. In addition, it should change when
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- * the substantive content of the naming system changes.
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- */
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- readonly date?: string;
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- /**
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- * The name of the organization or individual that published the naming
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- * system.
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- */
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- readonly publisher?: string;
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- /**
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- * Contact details to assist a user in finding and communicating with the
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- * publisher.
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- */
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- readonly contact?: ContactDetail[];
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- /**
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- * The name of the organization that is responsible for issuing
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- * identifiers or codes for this namespace and ensuring their
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- * non-collision.
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- */
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- readonly responsible?: string;
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- /**
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- * Categorizes a naming system for easier search by grouping related
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- * naming systems.
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- */
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- readonly type?: CodeableConcept;
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- /**
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- * A free text natural language description of the naming system from a
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- * consumer's perspective. Details about what the namespace identifies
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- * including scope, granularity, version labeling, etc.
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- */
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- readonly description?: string;
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- /**
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- * The content was developed with a focus and intent of supporting the
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- * contexts that are listed. These contexts may be general categories
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- * (gender, age, ...) or may be references to specific programs
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- * (insurance plans, studies, ...) and may be used to assist with
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- * indexing and searching for appropriate naming system instances.
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- */
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- readonly useContext?: UsageContext[];
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- /**
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- * A legal or geographic region in which the naming system is intended to
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- * be used.
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- */
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- readonly jurisdiction?: CodeableConcept[];
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- /**
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- * Provides guidance on the use of the namespace, including the handling
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- * of formatting characters, use of upper vs. lower case, etc.
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- */
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- readonly usage?: string;
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- /**
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- * Indicates how the system may be identified when referenced in
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- * electronic exchange.
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- */
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- readonly uniqueId?: NamingSystemUniqueId[];
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- }
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- /**
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- * Indicates how the system may be identified when referenced in
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- * electronic exchange.
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- */
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- export interface NamingSystemUniqueId {
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- /**
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- * Unique id for the element within a resource (for internal references).
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- * This may be any string value that does not contain spaces.
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- */
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- readonly id?: string;
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- /**
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- * May be used to represent additional information that is not part of
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- * the basic definition of the element. To make the use of extensions
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- * safe and manageable, there is a strict set of governance applied to
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- * the definition and use of extensions. Though any implementer can
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- * define an extension, there is a set of requirements that SHALL be met
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- * as part of the definition of the extension.
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- */
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- readonly extension?: Extension[];
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- /**
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- * May be used to represent additional information that is not part of
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- * the basic definition of the element and that modifies the
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- * understanding of the element in which it is contained and/or the
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- * understanding of the containing element's descendants. Usually
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- * modifier elements provide negation or qualification. To make the use
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- * of extensions safe and manageable, there is a strict set of governance
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- * applied to the definition and use of extensions. Though any
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- * implementer can define an extension, there is a set of requirements
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- * that SHALL be met as part of the definition of the extension.
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- * Applications processing a resource are required to check for modifier
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- * extensions.
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- *
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- * Modifier extensions SHALL NOT change the meaning of any elements on
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- * Resource or DomainResource (including cannot change the meaning of
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- * modifierExtension itself).
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- */
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- readonly modifierExtension?: Extension[];
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- /**
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- * Identifies the unique identifier scheme used for this particular
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- * identifier.
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- */
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- readonly type?: string;
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- /**
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- * The string that should be sent over the wire to identify the code
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- * system or identifier system.
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- */
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- readonly value?: string;
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- /**
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- * Indicates whether this identifier is the &quot;preferred&quot; identifier of
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- * this type.
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- */
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- readonly preferred?: boolean;
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- /**
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- * Notes about the past or intended usage of this identifier.
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- */
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- readonly comment?: string;
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- /**
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- * Identifies the period of time over which this identifier is considered
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- * appropriate to refer to the naming system. Outside of this window,
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- * the identifier might be non-deterministic.
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- */
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- readonly period?: Period;
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- }
@@ -1,7 +0,0 @@
1
- "use strict";
2
- /*
3
- * Generated by @medplum/generator
4
- * Do not edit manually.
5
- */
6
- Object.defineProperty(exports, "__esModule", { value: true });
7
- //# sourceMappingURL=NamingSystem.js.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"NamingSystem.js","sourceRoot":"","sources":["../../src/fhir/NamingSystem.ts"],"names":[],"mappings":";AAAA;;;GAGG","sourcesContent":["/*\n * Generated by @medplum/generator\n * Do not edit manually.\n */\n\nimport { CodeableConcept } from './CodeableConcept';\nimport { ContactDetail } from './ContactDetail';\nimport { Extension } from './Extension';\nimport { Meta } from './Meta';\nimport { Narrative } from './Narrative';\nimport { Period } from './Period';\nimport { Resource } from './Resource';\nimport { UsageContext } from './UsageContext';\n\n/**\n * A curated namespace that issues unique symbols within that namespace\n * for the identification of concepts, people, devices, etc. Represents\n * a &quot;System&quot; used within the Identifier and Coding data types.\n */\nexport interface NamingSystem {\n\n /**\n * This is a NamingSystem resource\n */\n readonly resourceType: 'NamingSystem';\n\n /**\n * The logical id of the resource, as used in the URL for the resource.\n * Once assigned, this value never changes.\n */\n readonly id?: string;\n\n /**\n * The metadata about the resource. This is content that is maintained by\n * the infrastructure. Changes to the content might not always be\n * associated with version changes to the resource.\n */\n readonly meta?: Meta;\n\n /**\n * A reference to a set of rules that were followed when the resource was\n * constructed, and which must be understood when processing the content.\n * Often, this is a reference to an implementation guide that defines the\n * special rules along with other profiles etc.\n */\n readonly implicitRules?: string;\n\n /**\n * The base language in which the resource is written.\n */\n readonly language?: string;\n\n /**\n * A human-readable narrative that contains a summary of the resource and\n * can be used to represent the content of the resource to a human. The\n * narrative need not encode all the structured data, but is required to\n * contain sufficient detail to make it &quot;clinically safe&quot; for a human to\n * just read the narrative. Resource definitions may define what content\n * should be represented in the narrative to ensure clinical safety.\n */\n readonly text?: Narrative;\n\n /**\n * These resources do not have an independent existence apart from the\n * resource that contains them - they cannot be identified independently,\n * and nor can they have their own independent transaction scope.\n */\n readonly contained?: Resource[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the resource. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the resource and that modifies the\n * understanding of the element that contains it and/or the understanding\n * of the containing element's descendants. Usually modifier elements\n * provide negation or qualification. To make the use of extensions safe\n * and manageable, there is a strict set of governance applied to the\n * definition and use of extensions. Though any implementer is allowed to\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension. Applications processing a\n * resource are required to check for modifier extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * A natural language name identifying the naming system. This name\n * should be usable as an identifier for the module by machine processing\n * applications such as code generation.\n */\n readonly name?: string;\n\n /**\n * The status of this naming system. Enables tracking the life-cycle of\n * the content.\n */\n readonly status?: string;\n\n /**\n * Indicates the purpose for the naming system - what kinds of things\n * does it make unique?\n */\n readonly kind?: string;\n\n /**\n * The date (and optionally time) when the naming system was published.\n * The date must change when the business version changes and it must\n * change if the status code changes. In addition, it should change when\n * the substantive content of the naming system changes.\n */\n readonly date?: string;\n\n /**\n * The name of the organization or individual that published the naming\n * system.\n */\n readonly publisher?: string;\n\n /**\n * Contact details to assist a user in finding and communicating with the\n * publisher.\n */\n readonly contact?: ContactDetail[];\n\n /**\n * The name of the organization that is responsible for issuing\n * identifiers or codes for this namespace and ensuring their\n * non-collision.\n */\n readonly responsible?: string;\n\n /**\n * Categorizes a naming system for easier search by grouping related\n * naming systems.\n */\n readonly type?: CodeableConcept;\n\n /**\n * A free text natural language description of the naming system from a\n * consumer's perspective. Details about what the namespace identifies\n * including scope, granularity, version labeling, etc.\n */\n readonly description?: string;\n\n /**\n * The content was developed with a focus and intent of supporting the\n * contexts that are listed. These contexts may be general categories\n * (gender, age, ...) or may be references to specific programs\n * (insurance plans, studies, ...) and may be used to assist with\n * indexing and searching for appropriate naming system instances.\n */\n readonly useContext?: UsageContext[];\n\n /**\n * A legal or geographic region in which the naming system is intended to\n * be used.\n */\n readonly jurisdiction?: CodeableConcept[];\n\n /**\n * Provides guidance on the use of the namespace, including the handling\n * of formatting characters, use of upper vs. lower case, etc.\n */\n readonly usage?: string;\n\n /**\n * Indicates how the system may be identified when referenced in\n * electronic exchange.\n */\n readonly uniqueId?: NamingSystemUniqueId[];\n}\n\n/**\n * Indicates how the system may be identified when referenced in\n * electronic exchange.\n */\nexport interface NamingSystemUniqueId {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element and that modifies the\n * understanding of the element in which it is contained and/or the\n * understanding of the containing element's descendants. Usually\n * modifier elements provide negation or qualification. To make the use\n * of extensions safe and manageable, there is a strict set of governance\n * applied to the definition and use of extensions. Though any\n * implementer can define an extension, there is a set of requirements\n * that SHALL be met as part of the definition of the extension.\n * Applications processing a resource are required to check for modifier\n * extensions.\n *\n * Modifier extensions SHALL NOT change the meaning of any elements on\n * Resource or DomainResource (including cannot change the meaning of\n * modifierExtension itself).\n */\n readonly modifierExtension?: Extension[];\n\n /**\n * Identifies the unique identifier scheme used for this particular\n * identifier.\n */\n readonly type?: string;\n\n /**\n * The string that should be sent over the wire to identify the code\n * system or identifier system.\n */\n readonly value?: string;\n\n /**\n * Indicates whether this identifier is the &quot;preferred&quot; identifier of\n * this type.\n */\n readonly preferred?: boolean;\n\n /**\n * Notes about the past or intended usage of this identifier.\n */\n readonly comment?: string;\n\n /**\n * Identifies the period of time over which this identifier is considered\n * appropriate to refer to the naming system. Outside of this window,\n * the identifier might be non-deterministic.\n */\n readonly period?: Period;\n}\n"]}
@@ -1,32 +0,0 @@
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- import { Extension } from './Extension';
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- /**
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- * Base StructureDefinition for Narrative Type: A human-readable summary
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- * of the resource conveying the essential clinical and business
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- * information for the resource.
6
- */
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- export interface Narrative {
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- /**
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- * Unique id for the element within a resource (for internal references).
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- * This may be any string value that does not contain spaces.
11
- */
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- readonly id?: string;
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- /**
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- * May be used to represent additional information that is not part of
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- * the basic definition of the element. To make the use of extensions
16
- * safe and manageable, there is a strict set of governance applied to
17
- * the definition and use of extensions. Though any implementer can
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- * define an extension, there is a set of requirements that SHALL be met
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- * as part of the definition of the extension.
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- */
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- readonly extension?: Extension[];
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- /**
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- * The status of the narrative - whether it's entirely generated (from
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- * just the defined data or the extensions too), or whether a human
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- * authored it and it may contain additional data.
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- */
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- readonly status?: string;
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- /**
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- * The actual narrative content, a stripped down version of XHTML.
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- */
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- readonly div?: string;
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- }
@@ -1,7 +0,0 @@
1
- "use strict";
2
- /*
3
- * Generated by @medplum/generator
4
- * Do not edit manually.
5
- */
6
- Object.defineProperty(exports, "__esModule", { value: true });
7
- //# sourceMappingURL=Narrative.js.map
@@ -1 +0,0 @@
1
- {"version":3,"file":"Narrative.js","sourceRoot":"","sources":["../../src/fhir/Narrative.ts"],"names":[],"mappings":";AAAA;;;GAGG","sourcesContent":["/*\n * Generated by @medplum/generator\n * Do not edit manually.\n */\n\nimport { Extension } from './Extension';\n\n/**\n * Base StructureDefinition for Narrative Type: A human-readable summary\n * of the resource conveying the essential clinical and business\n * information for the resource.\n */\nexport interface Narrative {\n\n /**\n * Unique id for the element within a resource (for internal references).\n * This may be any string value that does not contain spaces.\n */\n readonly id?: string;\n\n /**\n * May be used to represent additional information that is not part of\n * the basic definition of the element. To make the use of extensions\n * safe and manageable, there is a strict set of governance applied to\n * the definition and use of extensions. Though any implementer can\n * define an extension, there is a set of requirements that SHALL be met\n * as part of the definition of the extension.\n */\n readonly extension?: Extension[];\n\n /**\n * The status of the narrative - whether it's entirely generated (from\n * just the defined data or the extensions too), or whether a human\n * authored it and it may contain additional data.\n */\n readonly status?: string;\n\n /**\n * The actual narrative content, a stripped down version of XHTML.\n */\n readonly div?: string;\n}\n"]}