@mcp-graph-workflow/mcp-graph 5.2.0 → 5.4.0

package/dist/api/routes/integrations.js

@@ -1,6 +1,7 @@
 import { Router } from "express";
 import { getIntegrationsStatus } from "../../core/integrations/tool-status.js";
-import { readSerenaMemory, readAllSerenaMemories } from "../../core/integrations/serena-reader.js";
+import { readMemory, readAllMemories, writeMemory, deleteMemory } from "../../core/memory/memory-reader.js";
+import { migrateSerenaMemories } from "../../core/memory/memory-migrator.js";
 import { buildEnrichedContext } from "../../core/integrations/enriched-context.js";
 import { KnowledgeStore } from "../../core/store/knowledge-store.js";
 export function createIntegrationsRouter(storeRef, getBasePath) {
@@ -14,19 +15,21 @@ export function createIntegrationsRouter(storeRef, getBasePath) {
             next(err);
         }
     });
-    router.get("/serena/memories", async (_req, res, next) => {
+    // ── Memories CRUD ────────────────────────────────
+    router.get("/memories", async (_req, res, next) => {
         try {
-            const memories = await readAllSerenaMemories(getBasePath());
+            await migrateSerenaMemories(getBasePath());
+            const memories = await readAllMemories(getBasePath());
             res.json(memories);
         }
         catch (err) {
             next(err);
         }
     });
-    router.get("/serena/memories/:name", async (req, res, next) => {
+    router.get("/memories/:name", async (req, res, next) => {
         try {
             const name = req.params.name;
-            const memory = await readSerenaMemory(getBasePath(), name);
+            const memory = await readMemory(getBasePath(), name);
             if (!memory) {
                 res.status(404).json({ error: `Memory not found: ${name}` });
                 return;
@@ -37,27 +40,68 @@ export function createIntegrationsRouter(storeRef, getBasePath) {
             next(err);
         }
     });
-    router.get("/gitnexus/url", async (_req, res, next) => {
+    router.post("/memories", async (req, res, next) => {
         try {
-            const status = await getIntegrationsStatus(getBasePath());
-            if (!status.gitnexus.running) {
-                res.status(503).json({
-                    error: "GitNexus is not running",
-                    instructions: "Run: gitnexus analyze && gitnexus serve",
-                });
+            const { name, content } = req.body;
+            if (!name || !content) {
+                res.status(400).json({ error: "name and content are required" });
+                return;
+            }
+            await writeMemory(getBasePath(), name, content);
+            res.status(201).json({ ok: true, name });
+        }
+        catch (err) {
+            next(err);
+        }
+    });
+    router.delete("/memories/:name", async (req, res, next) => {
+        try {
+            const name = req.params.name;
+            const deleted = await deleteMemory(getBasePath(), name);
+            if (!deleted) {
+                res.status(404).json({ error: `Memory not found: ${name}` });
+                return;
+            }
+            res.json({ ok: true });
+        }
+        catch (err) {
+            next(err);
+        }
+    });
+    // Backward compat: redirect /serena/memories → /memories
+    router.get("/serena/memories", async (_req, res, next) => {
+        try {
+            await migrateSerenaMemories(getBasePath());
+            const memories = await readAllMemories(getBasePath());
+            res.json(memories);
+        }
+        catch (err) {
+            next(err);
+        }
+    });
+    router.get("/serena/memories/:name", async (req, res, next) => {
+        try {
+            const name = req.params.name;
+            const memory = await readMemory(getBasePath(), name);
+            if (!memory) {
+                res.status(404).json({ error: `Memory not found: ${name}` });
                 return;
             }
-            res.json({ url: status.gitnexus.url });
+            res.json(memory);
         }
         catch (err) {
             next(err);
         }
     });
-    // ── Enriched context (Serena + GitNexus combined) ──
+    // ── Enriched context (Memories + Code Intelligence combined) ──
     router.get("/enriched-context/:symbol", async (req, res, next) => {
         try {
             const symbol = req.params.symbol;
-            const ctx = await buildEnrichedContext(symbol, getBasePath());
+            const project = storeRef.current.getProject();
+            const ctx = await buildEnrichedContext(symbol, getBasePath(), 0, {
+                db: storeRef.current.getDb(),
+                projectId: project?.id,
+            });
             res.json(ctx);
         }
         catch (err) {
@@ -68,7 +112,7 @@ export function createIntegrationsRouter(storeRef, getBasePath) {
     router.get("/knowledge-status", (_req, res, next) => {
         try {
             const knowledgeStore = new KnowledgeStore(storeRef.current.getDb());
-            const sourceTypes = ["upload", "serena", "code_context", "docs", "web_capture"];
+            const sourceTypes = ["upload", "memory", "serena", "code_context", "docs", "web_capture"];
             const statuses = sourceTypes.map((st) => ({
                 source: st,
                 documentCount: knowledgeStore.count(st),

package/dist/api/routes/integrations.js.map

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package/dist/api/routes/knowledge.js

@@ -143,7 +143,7 @@ export function createKnowledgeRouter(storeRef) {
             const knowledgeStore = getKnowledgeStore();
             const total = knowledgeStore.count();
             const bySource = {};
-            const sourceTypes = ["upload", "serena", "code_context", "docs", "web_capture"];
+            const sourceTypes = ["upload", "memory", "serena", "code_context", "docs", "web_capture"];
             for (const st of sourceTypes) {
                 const c = knowledgeStore.count(st);
                 if (c > 0)

package/dist/api/routes/knowledge.js.map

@@ -1 +1 @@
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package/dist/api/routes/skills.d.ts

@@ -1,3 +1,4 @@
 import { Router } from "express";
-export declare function createSkillsRouter(getBasePath: () => string): Router;
+import type { StoreRef } from "../../core/store/store-manager.js";
+export declare function createSkillsRouter(getBasePath: () => string, storeRef?: StoreRef): Router;
 //# sourceMappingURL=skills.d.ts.map

package/dist/api/routes/skills.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"skills.d.ts","sourceRoot":"","sources":["../../../src/api/routes/skills.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,SAAS,CAAC;AAejC,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,mCAAmC,CAAC;AAclE,wBAAgB,kBAAkB,CAAC,WAAW,EAAE,MAAM,MAAM,EAAE,QAAQ,CAAC,EAAE,QAAQ,GAAG,MAAM,CA2MzF"}

package/dist/api/routes/skills.js

@@ -1,11 +1,201 @@
 import { Router } from "express";
+import { readFile } from "node:fs/promises";
 import { scanSkills } from "../../core/insights/skill-recommender.js";
-export function createSkillsRouter(getBasePath) {
+import { getBuiltInSkills, getSkillsByPhase } from "../../core/skills/built-in-skills.js";
+import { estimateTokens } from "../../core/context/token-estimator.js";
+import { setSkillEnabled, getSkillPreferences, createCustomSkill, updateCustomSkill, deleteCustomSkill, getCustomSkills, } from "../../core/skills/skill-store.js";
+import { CustomSkillInputSchema } from "../../schemas/skill.schema.js";
+export function createSkillsRouter(getBasePath, storeRef) {
     const router = Router();
-    router.get("/", async (_req, res, next) => {
+    /** Helper: get project ID + DB from storeRef */
+    function getProjectContext() {
+        if (!storeRef)
+            return null;
         try {
-            const skills = await scanSkills(getBasePath());
-            res.json(skills);
+            const project = storeRef.current.getProject();
+            if (!project)
+                return null;
+            return { db: storeRef.current.getDb(), projectId: project.id };
+        }
+        catch {
+            return null;
+        }
+    }
+    /**
+     * GET /skills — list all skills (built-in + filesystem + custom).
+     * Query params: ?phase=IMPLEMENT — filter by lifecycle phase.
+     * ?source=built-in|filesystem|custom — filter by source.
+     */
+    router.get("/", async (req, res, next) => {
+        try {
+            const phaseFilter = req.query.phase;
+            const sourceFilter = req.query.source;
+            const ctx = getProjectContext();
+            const preferences = ctx ? getSkillPreferences(ctx.db, ctx.projectId) : new Map();
+            const result = [];
+            // Built-in skills
+            if (!sourceFilter || sourceFilter === "built-in") {
+                const builtIn = phaseFilter
+                    ? getSkillsByPhase(phaseFilter)
+                    : getBuiltInSkills();
+                for (const skill of builtIn) {
+                    result.push({
+                        name: skill.name,
+                        description: skill.description,
+                        category: skill.category,
+                        phases: [...skill.phases],
+                        source: "built-in",
+                        estimatedTokens: estimateTokens(skill.instructions),
+                        enabled: preferences.get(skill.name) ?? true,
+                    });
+                }
+            }
+            // Filesystem skills
+            if (!sourceFilter || sourceFilter === "filesystem") {
+                const fsSkills = await scanSkills(getBasePath());
+                const builtInNames = new Set(getBuiltInSkills().map((s) => s.name));
+                for (const skill of fsSkills) {
+                    if (builtInNames.has(skill.name))
+                        continue;
+                    if (phaseFilter)
+                        continue; // filesystem skills have no phase metadata
+                    let tokens = 0;
+                    try {
+                        const content = await readFile(skill.filePath, "utf-8");
+                        tokens = estimateTokens(content);
+                    }
+                    catch {
+                        // file unreadable — default to 0
+                    }
+                    result.push({
+                        name: skill.name,
+                        description: skill.description,
+                        category: skill.category,
+                        source: "filesystem",
+                        estimatedTokens: tokens,
+                        filePath: skill.filePath,
+                        enabled: preferences.get(skill.name) ?? true,
+                    });
+                }
+            }
+            // Custom skills
+            if (ctx && (!sourceFilter || sourceFilter === "custom")) {
+                const customSkills = getCustomSkills(ctx.db, ctx.projectId);
+                for (const skill of customSkills) {
+                    if (phaseFilter && !skill.phases.includes(phaseFilter))
+                        continue;
+                    result.push({
+                        id: skill.id,
+                        name: skill.name,
+                        description: skill.description,
+                        category: skill.category,
+                        phases: [...skill.phases],
+                        source: "custom",
+                        estimatedTokens: estimateTokens(skill.instructions),
+                        enabled: preferences.get(skill.name) ?? true,
+                    });
+                }
+            }
+            const totalTokens = result.reduce((sum, s) => sum + s.estimatedTokens, 0);
+            res.json({ skills: result, totalTokens });
+        }
+        catch (err) {
+            next(err);
+        }
+    });
+    /**
+     * GET /skills/preferences — all skill preferences for active project.
+     */
+    router.get("/preferences", (req, res, next) => {
+        try {
+            const ctx = getProjectContext();
+            if (!ctx) {
+                res.json({ preferences: {} });
+                return;
+            }
+            const prefs = getSkillPreferences(ctx.db, ctx.projectId);
+            const obj = {};
+            for (const [k, v] of prefs)
+                obj[k] = v;
+            res.json({ preferences: obj });
+        }
+        catch (err) {
+            next(err);
+        }
+    });
+    /**
+     * PATCH /skills/:name/preference — set enabled/disabled for a skill.
+     */
+    router.patch("/:name/preference", (req, res, next) => {
+        try {
+            const ctx = getProjectContext();
+            if (!ctx) {
+                res.status(400).json({ error: "No active project" });
+                return;
+            }
+            const { enabled } = req.body;
+            if (typeof enabled !== "boolean") {
+                res.status(400).json({ error: "Missing or invalid 'enabled' boolean field" });
+                return;
+            }
+            setSkillEnabled(ctx.db, ctx.projectId, req.params.name, enabled);
+            res.json({ ok: true, name: req.params.name, enabled });
+        }
+        catch (err) {
+            next(err);
+        }
+    });
+    /**
+     * POST /skills/custom — create a custom skill.
+     */
+    router.post("/custom", (req, res, next) => {
+        try {
+            const ctx = getProjectContext();
+            if (!ctx) {
+                res.status(400).json({ error: "No active project" });
+                return;
+            }
+            const parsed = CustomSkillInputSchema.safeParse(req.body);
+            if (!parsed.success) {
+                res.status(400).json({ error: "Validation failed", details: parsed.error.issues });
+                return;
+            }
+            const skill = createCustomSkill(ctx.db, ctx.projectId, parsed.data);
+            res.status(201).json(skill);
+        }
+        catch (err) {
+            next(err);
+        }
+    });
+    /**
+     * PUT /skills/custom/:id — update a custom skill.
+     */
+    router.put("/custom/:id", (req, res, next) => {
+        try {
+            const ctx = getProjectContext();
+            if (!ctx) {
+                res.status(400).json({ error: "No active project" });
+                return;
+            }
+            const skill = updateCustomSkill(ctx.db, ctx.projectId, req.params.id, req.body);
+            res.json(skill);
+        }
+        catch (err) {
+            next(err);
+        }
+    });
+    /**
+     * DELETE /skills/custom/:id — delete a custom skill.
+     */
+    router.delete("/custom/:id", (req, res, next) => {
+        try {
+            const ctx = getProjectContext();
+            if (!ctx) {
+                res.status(400).json({ error: "No active project" });
+                return;
+            }
+            deleteCustomSkill(ctx.db, ctx.projectId, req.params.id);
+            res.status(204).send();
         }
         catch (err) {
             next(err);

package/dist/api/routes/skills.js.map

@@ -1 +1 @@
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+{"version":3,"file":"skills.js","sourceRoot":"","sources":["../../../src/api/routes/skills.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,SAAS,CAAC;AACjC,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAC5C,OAAO,EAAE,UAAU,EAAE,MAAM,0CAA0C,CAAC;AACtE,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,MAAM,sCAAsC,CAAC;AAC1F,OAAO,EAAE,cAAc,EAAE,MAAM,uCAAuC,CAAC;AACvE,OAAO,EACL,eAAe,EACf,mBAAmB,EACnB,iBAAiB,EACjB,iBAAiB,EACjB,iBAAiB,EACjB,eAAe,GAChB,MAAM,kCAAkC,CAAC;AAC1C,OAAO,EAAE,sBAAsB,EAAE,MAAM,+BAA+B,CAAC;AAgBvE,MAAM,UAAU,kBAAkB,CAAC,WAAyB,EAAE,QAAmB;IAC/E,MAAM,MAAM,GAAG,MAAM,EAAE,CAAC;IAExB,gDAAgD;IAChD,SAAS,iBAAiB;QACxB,IAAI,CAAC,QAAQ;YAAE,OAAO,IAAI,CAAC;QAC3B,IAAI,CAAC;YACH,MAAM,OAAO,GAAG,QAAQ,CAAC,OAAO,CAAC,UAAU,EAAE,CAAC;YAC9C,IAAI,CAAC,OAAO;gBAAE,OAAO,IAAI,CAAC;YAC1B,OAAO,EAAE,EAAE,EAAE,QAAQ,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,SAAS,EAAE,OAAO,CAAC,EAAE,EAAE,CAAC;QACjE,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,IAAI,CAAC;QACd,CAAC;IACH,CAAC;IAED;;;;OAIG;IACH,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE;QACvC,IAAI,CAAC;YACH,MAAM,WAAW,GAAG,GAAG,CAAC,KAAK,CAAC,KAA2B,CAAC;YAC1D,MAAM,YAAY,GAAG,GAAG,CAAC,KAAK,CAAC,MAA4B,CAAC;YAE5D,MAAM,GAAG,GAAG,iBAAiB,EAAE,CAAC;YAChC,MAAM,WAAW,GAAG,GAAG,CAAC,CAAC,CAAC,mBAAmB,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,EAAmB,CAAC;YAElG,MAAM,MAAM,GAAoB,EAAE,CAAC;YAEnC,kBAAkB;YAClB,IAAI,CAAC,YAAY,IAAI,YAAY,KAAK,UAAU,EAAE,CAAC;gBACjD,MAAM,OAAO,GAAG,WAAW;oBACzB,CAAC,CAAC,gBAAgB,CAAC,WAA6B,CAAC;oBACjD,CAAC,CAAC,gBAAgB,EAAE,CAAC;gBAEvB,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;oBAC5B,MAAM,CAAC,IAAI,CAAC;wBACV,IAAI,EAAE,KAAK,CAAC,IAAI;wBAChB,WAAW,EAAE,KAAK,CAAC,WAAW;wBAC9B,QAAQ,EAAE,KAAK,CAAC,QAAQ;wBACxB,MAAM,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,CAAC;wBACzB,MAAM,EAAE,UAAU;wBAClB,eAAe,EAAE,cAAc,CAAC,KAAK,CAAC,YAAY,CAAC;wBACnD,OAAO,EAAE,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,IAAI;qBAC7C,CAAC,CAAC;gBACL,CAAC;YACH,CAAC;YAED,oBAAoB;YACpB,IAAI,CAAC,YAAY,IAAI,YAAY,KAAK,YAAY,EAAE,CAAC;gBACnD,MAAM,QAAQ,GAAG,MAAM,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC;gBACjD,MAAM,YAAY,GAAG,IAAI,GAAG,CAAC,gBAAgB,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;gBAEpE,KAAK,MAAM,KAAK,IAAI,QAAQ,EAAE,CAAC;oBAC7B,IAAI,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;wBAAE,SAAS;oBAE3C,IAAI,WAAW;wBAAE,SAAS,CAAC,2CAA2C;oBAEtE,IAAI,MAAM,GAAG,CAAC,CAAC;oBACf,IAAI,CAAC;wBACH,MAAM,OAAO,GAAG,MAAM,QAAQ,CAAC,KAAK,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;wBACxD,MAAM,GAAG,cAAc,CAAC,OAAO,CAAC,CAAC;oBACnC,CAAC;oBAAC,MAAM,CAAC;wBACP,iCAAiC;oBACnC,CAAC;oBAED,MAAM,CAAC,IAAI,CAAC;wBACV,IAAI,EAAE,KAAK,CAAC,IAAI;wBAChB,WAAW,EAAE,KAAK,CAAC,WAAW;wBAC9B,QAAQ,EAAE,KAAK,CAAC,QAAQ;wBACxB,MAAM,EAAE,YAAY;wBACpB,eAAe,EAAE,MAAM;wBACvB,QAAQ,EAAE,KAAK,CAAC,QAAQ;wBACxB,OAAO,EAAE,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,IAAI;qBAC7C,CAAC,CAAC;gBACL,CAAC;YACH,CAAC;YAED,gBAAgB;YAChB,IAAI,GAAG,IAAI,CAAC,CAAC,YAAY,IAAI,YAAY,KAAK,QAAQ,CAAC,EAAE,CAAC;gBACxD,MAAM,YAAY,GAAG,eAAe,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,CAAC,SAAS,CAAC,CAAC;gBAC5D,KAAK,MAAM,KAAK,IAAI,YAAY,EAAE,CAAC;oBACjC,IAAI,WAAW,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,QAAQ,CAAC,WAA6B,CAAC;wBAAE,SAAS;oBAEnF,MAAM,CAAC,IAAI,CAAC;wBACV,EAAE,EAAE,KAAK,CAAC,EAAE;wBACZ,IAAI,EAAE,KAAK,CAAC,IAAI;wBAChB,WAAW,EAAE,KAAK,CAAC,WAAW;wBAC9B,QAAQ,EAAE,KAAK,CAAC,QAAQ;wBACxB,MAAM,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,CAAC;wBACzB,MAAM,EAAE,QAAQ;wBAChB,eAAe,EAAE,cAAc,CAAC,KAAK,CAAC,YAAY,CAAC;wBACnD,OAAO,EAAE,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,IAAI;qBAC7C,CAAC,CAAC;gBACL,CAAC;YACH,CAAC;YAED,MAAM,WAAW,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,CAAC,eAAe,EAAE,CAAC,CAAC,CAAC;YAC1E,GAAG,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,CAAC,CAAC;QAC5C,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,IAAI,CAAC,GAAG,CAAC,CAAC;QACZ,CAAC;IACH,CAAC,CAAC,CAAC;IAEH;;OAEG;IACH,MAAM,CAAC,GAAG,CAAC,cAAc,EAAE,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE;QAC5C,IAAI,CAAC;YACH,MAAM,GAAG,GAAG,iBAAiB,EAAE,CAAC;YAChC,IAAI,CAAC,GAAG,EAAE,CAAC;gBACT,GAAG,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE,EAAE,EAAE,CAAC,CAAC;gBAC9B,OAAO;YACT,CAAC;YACD,MAAM,KAAK,GAAG,mBAAmB,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,CAAC,SAAS,CAAC,CAAC;YACzD,MAAM,GAAG,GAA4B,EAAE,CAAC;YACxC,KAAK,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,KAAK;gBAAE,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;YACvC,GAAG,CAAC,IAAI,CAAC,EAAE,WAAW,EAAE,GAAG,EAAE,CAAC,CAAC;QACjC,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,IAAI,CAAC,GAAG,CAAC,CAAC;QACZ,CAAC;IACH,CAAC,CAAC,CAAC;IAEH;;OAEG;IACH,MAAM,CAAC,KAAK,CAAC,mBAAmB,EAAE,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE;QACnD,IAAI,CAAC;YACH,MAAM,GAAG,GAAG,iBAAiB,EAAE,CAAC;YAChC,IAAI,CAAC,GAAG,EAAE,CAAC;gBACT,GAAG,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,KAAK,EAAE,mBAAmB,EAAE,CAAC,CAAC;gBACrD,OAAO;YACT,CAAC;YACD,MAAM,EAAE,OAAO,EAAE,GAAG,GAAG,CAAC,IAA4B,CAAC;YACrD,IAAI,OAAO,OAAO,KAAK,SAAS,EAAE,CAAC;gBACjC,GAAG,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,KAAK,EAAE,4CAA4C,EAAE,CAAC,CAAC;gBAC9E,OAAO;YACT,CAAC;YACD,eAAe,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,CAAC,SAAS,EAAE,GAAG,CAAC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;YACjE,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,CAAC,MAAM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package/dist/cli/commands/index-cmd.js

@@ -3,7 +3,7 @@ import { SqliteStore } from "../../core/store/sqlite-store.js";
 import { KnowledgeStore } from "../../core/store/knowledge-store.js";
 import { DocsCacheStore } from "../../core/docs/docs-cache-store.js";
 import { EmbeddingStore } from "../../core/rag/embedding-store.js";
-import { indexSerenaMemories } from "../../core/rag/serena-indexer.js";
+import { indexMemories } from "../../core/rag/memory-indexer.js";
 import { indexCachedDocs } from "../../core/rag/docs-indexer.js";
 import { indexAllEmbeddings } from "../../core/rag/rag-pipeline.js";
 import { logger } from "../../core/utils/logger.js";
@@ -12,7 +12,7 @@ function output(msg) {
 }
 export function indexCommand() {
     return new Command("index")
-        .description("Reindex all knowledge sources (Serena, docs cache) and rebuild embeddings")
+        .description("Reindex all knowledge sources (memories, docs cache) and rebuild embeddings")
         .option("-d, --dir <dir>", "Project directory", process.cwd())
         .option("--json", "Output as JSON")
         .action(async (opts) => {
@@ -21,14 +21,14 @@ export function indexCommand() {
             const knowledgeStore = new KnowledgeStore(store.getDb());
             const docsCacheStore = new DocsCacheStore(store.getDb());
             const embeddingStore = new EmbeddingStore(store);
-            const serenaResult = await indexSerenaMemories(knowledgeStore, opts.dir);
+            const memoriesResult = await indexMemories(knowledgeStore, opts.dir);
             const docsResult = indexCachedDocs(knowledgeStore, docsCacheStore);
             embeddingStore.clear();
             const embeddingResult = await indexAllEmbeddings(store, embeddingStore);
             const totalKnowledge = knowledgeStore.count();
             if (opts.json) {
                 output(JSON.stringify({
-                    serena: serenaResult,
+                    memories: memoriesResult,
                     docs: docsResult,
                     embeddings: embeddingResult,
                     totalKnowledge,
@@ -36,7 +36,7 @@ export function indexCommand() {
             }
             else {
                 output("Knowledge indexing complete:");
-                output(`  Serena memories: ${serenaResult.memoriesFound} found, ${serenaResult.documentsIndexed} indexed`);
+                output(`  Memories: ${memoriesResult.memoriesFound} found, ${memoriesResult.documentsIndexed} indexed`);
                 output(`  Docs cache: ${docsResult.docsFound} found, ${docsResult.documentsIndexed} indexed`);
                 output(`  Embeddings: ${embeddingResult.nodes} nodes + ${embeddingResult.knowledge} knowledge`);
                 output(`  Total knowledge documents: ${totalKnowledge}`);

package/dist/cli/commands/index-cmd.js.map

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package/dist/core/code/code-indexer.d.ts

@@ -0,0 +1,20 @@
+/**
+ * Code indexer — orchestrates: walk files → analyze → store.
+ * Supports incremental reindexing by clearing per-file data before reinserting.
+ */
+import type { CodeStore } from "./code-store.js";
+import type { IndexResult } from "./code-types.js";
+export declare class CodeIndexer {
+    private readonly store;
+    private readonly projectId;
+    constructor(store: CodeStore, projectId: string);
+    /**
+     * Index all TypeScript/JavaScript files in a directory tree.
+     */
+    indexDirectory(dirPath: string, basePath: string): IndexResult;
+    /**
+     * Index specific files.
+     */
+    indexFiles(filePaths: string[], basePath: string): IndexResult;
+}
+//# sourceMappingURL=code-indexer.d.ts.map

package/dist/core/code/code-indexer.d.ts.map

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