@mc1global/opencode-jarvis 0.4.0 → 0.7.0

package/dist/infrastructure/rag/file-index-registry.js

@@ -0,0 +1,67 @@
+/**
+ * RAG Infrastructure — File Index Registry
+ *
+ * JSON file-based implementation of FileIndexRegistryPort.
+ * Persists per-workspace records of indexed files with their mtimes,
+ * enabling incremental reindexing (skip unchanged files).
+ *
+ * Storage layout: {persistRoot}/{workspace}/index-manifest.json
+ *
+ * SOLID: SRP — file index persistence only
+ * SOLID: DIP — implements domain FileIndexRegistryPort interface
+ * DDD: Infrastructure adapter for file-based persistence
+ */
+import { readFile, writeFile, unlink, mkdir } from "node:fs/promises";
+import { join } from "node:path";
+/**
+ * JSON file-backed implementation of the file index registry.
+ * Stores one manifest file per workspace at `{persistRoot}/{workspace}/index-manifest.json`.
+ */
+export class JsonFileIndexRegistry {
+    persistRoot;
+    static MANIFEST_NAME = "index-manifest.json";
+    constructor(persistRoot) {
+        this.persistRoot = persistRoot;
+    }
+    /** Load all records for a workspace. Returns empty array if no manifest. */
+    async loadRecords(workspace) {
+        const path = this.manifestPath(workspace);
+        try {
+            const raw = await readFile(path, "utf-8");
+            const parsed = JSON.parse(raw);
+            if (parsed.version !== 1 || !Array.isArray(parsed.records)) {
+                return [];
+            }
+            return parsed.records;
+        }
+        catch {
+            return [];
+        }
+    }
+    /** Save all records for a workspace (replaces previous manifest). */
+    async saveRecords(workspace, records) {
+        const dir = join(this.persistRoot, workspace.toLowerCase());
+        await mkdir(dir, { recursive: true });
+        const manifest = {
+            version: 1,
+            updatedAt: new Date().toISOString(),
+            records,
+        };
+        const path = this.manifestPath(workspace);
+        await writeFile(path, JSON.stringify(manifest, null, 2), "utf-8");
+    }
+    /** Clear all records for a workspace (delete manifest file). */
+    async clearRecords(workspace) {
+        const path = this.manifestPath(workspace);
+        try {
+            await unlink(path);
+        }
+        catch {
+            // File may not exist — not an error
+        }
+    }
+    manifestPath(workspace) {
+        return join(this.persistRoot, workspace.toLowerCase(), JsonFileIndexRegistry.MANIFEST_NAME);
+    }
+}
+//# sourceMappingURL=file-index-registry.js.map

package/dist/infrastructure/rag/file-index-registry.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"file-index-registry.js","sourceRoot":"","sources":["../../../src/infrastructure/rag/file-index-registry.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AACH,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AACtE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAajC;;;GAGG;AACH,MAAM,OAAO,qBAAqB;IAGH;IAFrB,MAAM,CAAU,aAAa,GAAG,qBAAqB,CAAC;IAE9D,YAA6B,WAAmB;QAAnB,gBAAW,GAAX,WAAW,CAAQ;IAAG,CAAC;IAEpD,4EAA4E;IAC5E,KAAK,CAAC,WAAW,CAAC,SAAiB;QACjC,MAAM,IAAI,GAAG,IAAI,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC;QAC1C,IAAI,CAAC;YACH,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;YAC1C,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAiB,CAAC;YAC/C,IAAI,MAAM,CAAC,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,OAAO,CAAC,EAAE,CAAC;gBAC3D,OAAO,EAAE,CAAC;YACZ,CAAC;YACD,OAAO,MAAM,CAAC,OAAO,CAAC;QACxB,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,EAAE,CAAC;QACZ,CAAC;IACH,CAAC;IAED,qEAAqE;IACrE,KAAK,CAAC,WAAW,CAAC,SAAiB,EAAE,OAAmC;QACtE,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC;QAC5D,MAAM,KAAK,CAAC,GAAG,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QACtC,MAAM,QAAQ,GAAiB;YAC7B,OAAO,EAAE,CAAC;YACV,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;YACnC,OAAO;SACR,CAAC;QACF,MAAM,IAAI,GAAG,IAAI,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC;QAC1C,MAAM,SAAS,CAAC,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,OAAO,CAAC,CAAC;IACpE,CAAC;IAED,gEAAgE;IAChE,KAAK,CAAC,YAAY,CAAC,SAAiB;QAClC,MAAM,IAAI,GAAG,IAAI,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC;QAC1C,IAAI,CAAC;YACH,MAAM,MAAM,CAAC,IAAI,CAAC,CAAC;QACrB,CAAC;QAAC,MAAM,CAAC;YACP,oCAAoC;QACtC,CAAC;IACH,CAAC;IAEO,YAAY,CAAC,SAAiB;QACpC,OAAO,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,SAAS,CAAC,WAAW,EAAE,EAAE,qBAAqB,CAAC,aAAa,CAAC,CAAC;IAC9F,CAAC"}

package/dist/mcp-server.js

@@ -13,7 +13,7 @@
  */
 import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
-import { mkdirSync } from "node:fs";
+import { existsSync, mkdirSync } from "node:fs";
 import { basename, join, resolve } from "node:path";
 import { registerToolsWithMcp } from "./application/mcp/tool-adapter.js";
 import { createMcpMiddleware, McpSessionTracker } from "./application/mcp/middleware.js";
@@ -45,6 +45,7 @@ import { VectraVectorRepository } from "./infrastructure/rag/vectra-adapter.js";
 import { OllamaEmbeddingProvider } from "./infrastructure/rag/ollama-embeddings.js";
 import { LangchainTextSplitter } from "./infrastructure/rag/text-splitter.js";
 import { FileSystemDiscovery } from "./infrastructure/rag/file-discovery.js";
+import { JsonFileIndexRegistry } from "./infrastructure/rag/file-index-registry.js";
 import { RagUseCases } from "./application/rag/use-cases.js";
 import { OracleUseCases } from "./application/rag/oracle-use-cases.js";
 import { LspClientAdapter } from "./infrastructure/domain-map/lsp-adapter.js";
@@ -96,6 +97,8 @@ import { createAgentRegistryTools } from "./tools/agent-registry-tools.js";
 import { createPipelineTools } from "./tools/pipeline-tools.js";
 import { createAzureSyncTools } from "./tools/azure-sync-tools.js";
 import { createAzureSyncEventTools } from "./tools/azure-sync-event-tools.js";
+import { createBootstrapTools } from "./tools/bootstrap-tools.js";
+import { BootstrapUseCases, HealthcheckUseCases, TerminalCommandsUseCases } from "./application/bootstrap/index.js";
 // ── Helpers ───────────────────────────────────────────────────────────
 /** Derive workspace name from directory path. */
 function getWorkspace(directory) {
@@ -225,7 +228,8 @@ async function main() {
     const vectorRepository = new VectraVectorRepository(ragPersistRoot, ragConfig.ollama.model);
     const textSplitter = new LangchainTextSplitter();
     const fileDiscovery = new FileSystemDiscovery();
-    const ragUseCases = new RagUseCases({ embeddingProvider, vectorRepository, textSplitter, fileDiscovery, ragConfig });
+    const fileIndexRegistry = new JsonFileIndexRegistry(ragPersistRoot);
+    const ragUseCases = new RagUseCases({ embeddingProvider, vectorRepository, textSplitter, fileDiscovery, ragConfig, fileIndexRegistry });
     const oracleUseCases = new OracleUseCases({ embeddingProvider, vectorRepository, textSplitter, fileDiscovery });
     // ── Domain Map (LLM stub in MCP mode) ───────────────────────────
     const lspClient = new LspClientAdapter();
@@ -267,7 +271,26 @@ async function main() {
             },
         }, azureSyncConfig.pollIntervalSecs);
     }
-    // ── Create All Tools ────────────────────────────────────────────
+    // ── Bootstrap + All Tools ────────────────────────────────────────
+    const bootstrapUseCases = new BootstrapUseCases();
+    const healthcheckUseCases = new HealthcheckUseCases({
+        ollamaUrl: ragConfig.ollama.url,
+        ollamaModel: ragConfig.ollama.model,
+        dbPath,
+        configPath: join(directory, "config", "jarvis.yaml"),
+        workspace: getWorkspace(directory),
+        getRagStatus: async (ws) => {
+            try {
+                const s = await ragUseCases.status({ workspace: ws });
+                if (s.success)
+                    return { documentCount: s.data.documentCount };
+                return null;
+            }
+            catch {
+                return null;
+            }
+        },
+    });
     const allTools = {
         ...createContextMemoryTools({ sessionUseCases, todoUseCases, noteUseCases, getWorkspace }),
         ...createKanbanCardTools({ cardUseCases, sprintUseCases, epicUseCases, getWorkspace }),
@@ -290,6 +313,14 @@ async function main() {
             defaultOrg: azureSyncConfig.organization, defaultProject: azureSyncConfig.project, defaultRepository: azureSyncConfig.repository,
         }),
         ...createAzureSyncEventTools({ syncEventUseCases, pollService }),
+        ...createBootstrapTools({
+            bootstrapUseCases, healthcheckUseCases, configService, directory,
+            terminalCommandsUseCases: new TerminalCommandsUseCases({
+                directory,
+                hasVault: existsSync(join(directory, "obsidian-vault")),
+                isNpmInstall: false,
+            }),
+        }),
     };
     // ── Tool Filtering (from config) ─────────────────────────────────
     const mcpConfig = configService.getMcpServerConfig();
@@ -300,6 +331,13 @@ async function main() {
     // ── Bootstrap ───────────────────────────────────────────────────
     workspaceRegistryUseCases.autoRegister(getWorkspace(directory), directory).catch(() => { });
     agentRegistryUseCases.bootstrapBuiltInProfiles(BUILT_IN_PROFILES).catch(() => { });
+    // Auto-bootstrap AGENTS.md + project structure if missing.
+    try {
+        const bsRes = bootstrapUseCases.bootstrap(directory, bootstrapUseCases.buildConfig(azureSyncConfig), false);
+        if (bsRes.agentsMdCreated)
+            process.stderr.write(`AGENTS.md auto-generated: ${bsRes.agentsMdPath}\n`);
+    }
+    catch { /* non-critical — log suppressed in MCP mode */ }
     // ── Middleware (Governance + Metrics) ─────────────────────────────
     const sessionTracker = new McpSessionTracker();
     const middleware = createMcpMiddleware({

package/dist/mcp-server.js.map

@@ -1 +1 @@
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package/dist/tools/bootstrap-tools.d.ts

@@ -0,0 +1,17 @@
+import type { BootstrapUseCases } from "../application/bootstrap/index.js";
+import type { HealthcheckUseCases } from "../application/bootstrap/index.js";
+import type { TerminalCommandsUseCases } from "../application/bootstrap/index.js";
+import type { ConfigService } from "../application/config/config-service.js";
+import type { ToolDefinition } from "@opencode-ai/plugin";
+export interface BootstrapToolsDeps {
+    readonly bootstrapUseCases: BootstrapUseCases;
+    readonly healthcheckUseCases: HealthcheckUseCases;
+    readonly terminalCommandsUseCases: TerminalCommandsUseCases;
+    readonly configService: ConfigService;
+    readonly directory: string;
+}
+/**
+ * Creates bootstrap tools for JARVIS project initialization.
+ */
+export declare function createBootstrapTools(deps: BootstrapToolsDeps): Record<string, ToolDefinition>;
+//# sourceMappingURL=bootstrap-tools.d.ts.map

package/dist/tools/bootstrap-tools.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/bootstrap-tools.js

@@ -0,0 +1,171 @@
+/**
+ * Bootstrap Tools
+ *
+ * OpenCode tool definitions for project bootstrapping and healthcheck.
+ * Provides on-demand regeneration of AGENTS.md and full
+ * JARVIS project structure (.jarvis/, config/, vault skeleton).
+ *
+ * Tools defined (2):
+ *   jarvis-bootstrap    — Regenerate AGENTS.md + project structure
+ *   jarvis-healthcheck  — Environment readiness diagnostic
+ *
+ * SOLID: SRP — bootstrap tool exposure only
+ * SOLID: DIP — depends on use case abstractions
+ */
+import { tool } from "@opencode-ai/plugin";
+const z = tool.schema;
+// ── Tool Factory ──────────────────────────────────────────────────────
+/**
+ * Creates bootstrap tools for JARVIS project initialization.
+ */
+export function createBootstrapTools(deps) {
+    const { bootstrapUseCases, healthcheckUseCases, terminalCommandsUseCases, configService, directory } = deps;
+    // ── jarvis-bootstrap ──────────────────────────────────────────────
+    const jarvisBootstrap = tool({
+        description: "Regenerate the AGENTS.md file and ensure the full JARVIS project " +
+            "structure exists (.jarvis/ directory, config/jarvis.yaml with defaults, " +
+            "obsidian-vault/ skeleton). The generated AGENTS.md is config-adaptive: " +
+            "Azure DevOps section only appears when org+project are configured, " +
+            "Dagger/pipeline section when pipeline is enabled, and container-use " +
+            "section when environments are available. Use this to re-bootstrap " +
+            "a project after changing configuration.",
+        args: {
+            force: z
+                .boolean()
+                .optional()
+                .describe("Force regeneration of AGENTS.md even if it already exists. " +
+                "Default is true (always regenerates when called explicitly)."),
+        },
+        async execute(args) {
+            const force = args.force !== false;
+            let azureSyncConfig;
+            try {
+                azureSyncConfig = configService.getAzureSyncConfig();
+            }
+            catch {
+                // Config may not be available yet — use defaults
+            }
+            const config = bootstrapUseCases.buildConfig(azureSyncConfig);
+            const result = bootstrapUseCases.bootstrap(directory, config, force);
+            const lines = [];
+            if (result.agentsMdCreated) {
+                lines.push(`AGENTS.md ${force ? "regenerated" : "created"} at: ${result.agentsMdPath}`);
+            }
+            else {
+                lines.push("AGENTS.md already exists (use force=true to regenerate).");
+            }
+            if (result.directoriesCreated.length > 0) {
+                lines.push(`Directories created: ${result.directoriesCreated.join(", ")}`);
+            }
+            else {
+                lines.push("All directories already exist.");
+            }
+            if (result.configCreated) {
+                lines.push("config/jarvis.yaml created with defaults.");
+            }
+            const sections = ["kanban lifecycle", "guardrails", "governance", "vault", "git strategy", "config system"];
+            if (config.containerUseEnabled)
+                sections.push("container-use");
+            if (config.azureSyncEnabled)
+                sections.push(`azure-sync (${config.azureOrg}/${config.azureProject})`);
+            if (config.pipelineEnabled)
+                sections.push("pipeline/dagger");
+            lines.push(`Active sections: ${sections.join(", ")}`);
+            return lines.join("\n");
+        },
+    });
+    // ── jarvis-healthcheck ────────────────────────────────────────────
+    const jarvisHealthcheck = tool({
+        description: "Run a non-destructive environment readiness diagnostic. Checks: " +
+            "Bun runtime, Ollama connectivity, embedding model availability, " +
+            "SQLite database, config file, RAG index status, Dagger CLI (optional), " +
+            "and Azure CLI (optional). Returns pass/warn/fail per check with " +
+            "actionable remediation instructions for failures.",
+        args: {},
+        async execute() {
+            const result = await healthcheckUseCases.runAll();
+            const lines = [];
+            lines.push("# JARVIS Environment Healthcheck");
+            lines.push("");
+            for (const check of result.checks) {
+                const icon = check.status === "pass" ? "[PASS]"
+                    : check.status === "warn" ? "[WARN]"
+                        : "[FAIL]";
+                lines.push(`${icon} ${check.name}: ${check.message}`);
+                if (check.detail !== undefined) {
+                    lines.push(`       ${check.detail}`);
+                }
+                if (check.fix !== undefined) {
+                    lines.push(`  FIX: ${check.fix}`);
+                }
+            }
+            lines.push("");
+            lines.push(`Summary: ${String(result.summary.pass)} pass, ${String(result.summary.warn)} warn, ${String(result.summary.fail)} fail (${String(result.summary.total)} total)`);
+            lines.push(result.healthy ? "Status: HEALTHY" : "Status: UNHEALTHY — fix failing checks above");
+            return lines.join("\n");
+        },
+    });
+    // ── jarvis-terminal-commands ───────────────────────────────────────
+    const jarvisTerminalCommands = tool({
+        description: "List terminal commands for long-running JARVIS operations that " +
+            "should be run in a separate terminal session (not via agent tools). " +
+            "Returns copy-paste commands with context-aware paths for: " +
+            "RAG codebase indexing, ORACLE documentation indexing, and " +
+            "MCP server startup. Use this when the user needs to run " +
+            "operations that would timeout in the plugin.",
+        args: {
+            command: z
+                .string()
+                .optional()
+                .describe("Filter by command ID: 'rag-index', 'oracle-index', or 'mcp-server'. " +
+                "Omit to list all available commands."),
+        },
+        async execute(args) {
+            const result = terminalCommandsUseCases.list({
+                ...(args.command !== undefined ? { commandId: args.command } : {}),
+            });
+            if (result.commands.length === 0) {
+                return args.command !== undefined
+                    ? `No command found with ID '${args.command}'. Available: rag-index, oracle-index, mcp-server`
+                    : "No terminal commands available.";
+            }
+            const lines = [];
+            lines.push("# JARVIS Terminal Commands");
+            lines.push("");
+            lines.push("Run these in a separate terminal session:");
+            lines.push("");
+            for (const cmd of result.commands) {
+                lines.push(`## ${cmd.name}`);
+                lines.push(cmd.description);
+                lines.push("");
+                lines.push("**Command:**");
+                lines.push("```bash");
+                lines.push(cmd.command);
+                lines.push("```");
+                if (cmd.scriptCommand !== undefined) {
+                    lines.push("");
+                    lines.push("**Script (alternative):**");
+                    lines.push("```bash");
+                    lines.push(cmd.scriptCommand);
+                    lines.push("```");
+                }
+                lines.push("");
+                lines.push(`**Duration:** ${cmd.durationHint}`);
+                if (cmd.prerequisites.length > 0) {
+                    lines.push("**Prerequisites:**");
+                    for (const prereq of cmd.prerequisites) {
+                        lines.push(`  - ${prereq}`);
+                    }
+                }
+                lines.push("");
+            }
+            return lines.join("\n");
+        },
+    });
+    return {
+        "jarvis-bootstrap": jarvisBootstrap,
+        "jarvis-healthcheck": jarvisHealthcheck,
+        "jarvis-terminal-commands": jarvisTerminalCommands,
+    };
+}
+//# sourceMappingURL=bootstrap-tools.js.map

package/dist/tools/bootstrap-tools.js.map

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package/dist/tools/rag-tools.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"rag-tools.d.ts","sourceRoot":"","sources":["../../src/tools/rag-tools.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAC1D,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,iCAAiC,CAAC;AACnE,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,wCAAwC,CAAC;AAM7E,MAAM,WAAW,YAAY;IAC3B,QAAQ,CAAC,WAAW,EAAE,WAAW,CAAC;IAClC,QAAQ,CAAC,cAAc,EAAE,cAAc,CAAC;IACxC,QAAQ,CAAC,YAAY,EAAE,CAAC,SAAS,EAAE,MAAM,KAAK,MAAM,CAAC;CACtD;AA2CD,wBAAgB,cAAc,CAC5B,IAAI,EAAE,YAAY,GACjB,MAAM,CAAC,MAAM,EAAE,cAAc,CAAC,CA4QhC"}

package/dist/tools/rag-tools.js

@@ -95,14 +95,21 @@ export function createRagTools(deps) {
             if (!result.success)
                 return `ERROR: ${result.error}`;
             const d = result.data;
-            return [
+            const lines = [
                 `RAG Index Complete — ${d.workspace}`,
                 `Project: ${d.projectType}`,
                 `Files indexed: ${d.filesIndexed}`,
                 `Chunks created: ${d.chunksCreated}`,
                 `Files excluded: ${d.excludedFiles}`,
                 `Total size: ${d.totalSizeMb} MB`,
-            ].join("\n");
+            ];
+            if (d.filesSkipped > 0)
+                lines.push(`Files skipped (unchanged): ${d.filesSkipped}`);
+            if (d.filesUpdated > 0)
+                lines.push(`Files updated (re-indexed): ${d.filesUpdated}`);
+            if (d.filesRemoved > 0)
+                lines.push(`Files removed (deleted): ${d.filesRemoved}`);
+            return lines.join("\n");
         },
     });
     // ── rag-snippet ───────────────────────────────────────────────

package/dist/tools/rag-tools.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mc1global/opencode-jarvis",
-  "version": "0.4.0",
+  "version": "0.7.0",
   "description": "JARVIS Framework - OpenCode native plugin for multi-agent development with DDD architecture",
   "author": "Julio Fabio de O. Chagas <julio.fabio@mc1global.com>",
   "license": "SEE LICENSE IN LICENSE",
@@ -20,7 +20,8 @@
   "files": [
     "dist/",
     "LICENSE",
-    "README.md"
+    "README.md",
+    "QUICK-GUIDE.md"
   ],
   "scripts": {
     "build": "tsc",