@mat3ra/made 2026.8.7-0 → 2026.8.18-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (522) hide show
  1. package/dist/js/Material.d.ts +219 -0
  2. package/dist/js/Material.js +457 -0
  3. package/dist/js/basis/basis.d.ts +14 -9
  4. package/dist/js/basis/basis.js +15 -13
  5. package/dist/js/basis/constrained_basis.d.ts +9 -7
  6. package/dist/js/basis/constrained_basis.js +4 -4
  7. package/dist/js/generated/MaterialSchemaMixin.d.ts +5 -0
  8. package/dist/js/generated/MaterialSchemaMixin.js +69 -0
  9. package/dist/js/lattice/lattice.d.ts +4 -3
  10. package/dist/js/lattice/lattice.js +1 -2
  11. package/dist/js/made.d.ts +12 -12
  12. package/dist/js/made.js +38 -5
  13. package/dist/js/parsers/espresso.d.ts +2 -3
  14. package/dist/js/parsers/espresso.js +0 -1
  15. package/dist/js/parsers/native_format_parsers.d.ts +9 -8
  16. package/dist/js/parsers/native_format_parsers.js +6 -6
  17. package/dist/js/parsers/parsers.d.ts +6 -6
  18. package/dist/js/parsers/poscar.d.ts +5 -4
  19. package/dist/js/parsers/poscar.js +3 -2
  20. package/dist/js/parsers/xyz.d.ts +3 -5
  21. package/dist/js/parsers/xyz.js +3 -4
  22. package/dist/js/parsers/xyz_combinatorial_basis.js +3 -1
  23. package/dist/js/tools/basis.d.ts +1 -1
  24. package/dist/js/tools/index.d.ts +7 -7
  25. package/dist/js/tools/material.d.ts +1 -1
  26. package/dist/js/tools/material.js +8 -7
  27. package/dist/js/tools/supercell.d.ts +4 -5
  28. package/dist/js/tools/supercell.js +2 -4
  29. package/dist/js/tools/surface.d.ts +4 -4
  30. package/dist/js/tools/surface.js +2 -7
  31. package/package.json +12 -8
  32. package/.babelrc +0 -10
  33. package/.eslintrc.json +0 -11
  34. package/.gitattributes +0 -1
  35. package/.husky/post-checkout +0 -3
  36. package/.husky/post-commit +0 -3
  37. package/.husky/post-merge +0 -3
  38. package/.husky/pre-commit +0 -6
  39. package/.husky/pre-push +0 -3
  40. package/.mocharc.json +0 -5
  41. package/.pre-commit-config.yaml +0 -26
  42. package/.prettierignore +0 -2
  43. package/.prettierrc +0 -6
  44. package/AGENTS.md +0 -133
  45. package/MANIFEST.in +0 -1
  46. package/data/constants.json +0 -13
  47. package/data/reciprocal_paths.json +0 -111
  48. package/dist/js/material.d.ts +0 -169
  49. package/dist/js/material.js +0 -362
  50. package/images/made/tools/tools_diagram_general.png +0 -3
  51. package/images/made/tools/tools_diagram_interface.png +0 -3
  52. package/pyproject.toml +0 -123
  53. package/src/__init__.py +0 -0
  54. package/src/js/basis/basis.ts +0 -621
  55. package/src/js/basis/constrained_basis.ts +0 -114
  56. package/src/js/basis/coordinates.ts +0 -93
  57. package/src/js/basis/elements.ts +0 -24
  58. package/src/js/basis/helpers.ts +0 -20
  59. package/src/js/basis/labels.ts +0 -6
  60. package/src/js/cell/cell.ts +0 -150
  61. package/src/js/cell/conventional_cell.ts +0 -86
  62. package/src/js/cell/primitive_cell.ts +0 -166
  63. package/src/js/constants/molecule.ts +0 -18
  64. package/src/js/constants.ts +0 -4
  65. package/src/js/constraints/constraints.ts +0 -45
  66. package/src/js/lattice/lattice.ts +0 -306
  67. package/src/js/lattice/lattice_types.ts +0 -134
  68. package/src/js/lattice/reciprocal/lattice_reciprocal.ts +0 -193
  69. package/src/js/lattice/reciprocal/paths.ts +0 -39
  70. package/src/js/lattice/reciprocal/symmetry_points.ts +0 -886
  71. package/src/js/lattice/unit_cell.ts +0 -66
  72. package/src/js/made.ts +0 -62
  73. package/src/js/material.ts +0 -458
  74. package/src/js/parsers/cif.ts +0 -25
  75. package/src/js/parsers/errors.ts +0 -6
  76. package/src/js/parsers/espresso.ts +0 -30
  77. package/src/js/parsers/native_format_parsers.ts +0 -51
  78. package/src/js/parsers/parsers.ts +0 -13
  79. package/src/js/parsers/poscar.ts +0 -212
  80. package/src/js/parsers/xyz.ts +0 -187
  81. package/src/js/parsers/xyz_combinatorial_basis.ts +0 -265
  82. package/src/js/tools/basis.ts +0 -132
  83. package/src/js/tools/cell.ts +0 -41
  84. package/src/js/tools/index.ts +0 -11
  85. package/src/js/tools/material.ts +0 -62
  86. package/src/js/tools/supercell.ts +0 -88
  87. package/src/js/tools/surface.ts +0 -223
  88. package/src/py/__init__.py +0 -0
  89. package/src/py/mat3ra/__init__.py +0 -1
  90. package/src/py/mat3ra/made/__init__.py +0 -7
  91. package/src/py/mat3ra/made/basis/__init__.py +0 -255
  92. package/src/py/mat3ra/made/basis/coordinates.py +0 -43
  93. package/src/py/mat3ra/made/cell/__init__.py +0 -55
  94. package/src/py/mat3ra/made/cell/primitive_cell.py +0 -156
  95. package/src/py/mat3ra/made/data_helper.py +0 -5
  96. package/src/py/mat3ra/made/lattice.py +0 -195
  97. package/src/py/mat3ra/made/material.py +0 -134
  98. package/src/py/mat3ra/made/metadata.py +0 -45
  99. package/src/py/mat3ra/made/reciprocal/__init__.py +0 -5
  100. package/src/py/mat3ra/made/reciprocal/lattice_reciprocal.py +0 -147
  101. package/src/py/mat3ra/made/reciprocal/paths.py +0 -30
  102. package/src/py/mat3ra/made/reciprocal/symmetry_points.py +0 -385
  103. package/src/py/mat3ra/made/tools/README.md +0 -173
  104. package/src/py/mat3ra/made/tools/__init__.py +0 -0
  105. package/src/py/mat3ra/made/tools/analyze/__init__.py +0 -31
  106. package/src/py/mat3ra/made/tools/analyze/basis/__init__.py +0 -3
  107. package/src/py/mat3ra/made/tools/analyze/basis/analyzer.py +0 -50
  108. package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer.py +0 -32
  109. package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer_factory.py +0 -31
  110. package/src/py/mat3ra/made/tools/analyze/coordination.py +0 -56
  111. package/src/py/mat3ra/made/tools/analyze/crystal_site/__init__.py +0 -0
  112. package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_crystal_site_material_analyzer.py +0 -35
  113. package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_material_analyzer.py +0 -49
  114. package/src/py/mat3ra/made/tools/analyze/crystal_site/crystal_site_analyzer.py +0 -65
  115. package/src/py/mat3ra/made/tools/analyze/crystal_site/voronoi_crystal_site_analyzer.py +0 -47
  116. package/src/py/mat3ra/made/tools/analyze/enums.py +0 -33
  117. package/src/py/mat3ra/made/tools/analyze/fingerprint/__init__.py +0 -4
  118. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/__init__.py +0 -0
  119. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/layered_fingerprint_along_axis.py +0 -83
  120. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/unique_element_string_per_layer.py +0 -9
  121. package/src/py/mat3ra/made/tools/analyze/interface/__init__.py +0 -20
  122. package/src/py/mat3ra/made/tools/analyze/interface/commensurate.py +0 -156
  123. package/src/py/mat3ra/made/tools/analyze/interface/enums.py +0 -60
  124. package/src/py/mat3ra/made/tools/analyze/interface/grain_boundary.py +0 -80
  125. package/src/py/mat3ra/made/tools/analyze/interface/simple.py +0 -251
  126. package/src/py/mat3ra/made/tools/analyze/interface/twisted_nanoribbons.py +0 -91
  127. package/src/py/mat3ra/made/tools/analyze/interface/utils/__init__.py +0 -77
  128. package/src/py/mat3ra/made/tools/analyze/interface/utils/holders.py +0 -14
  129. package/src/py/mat3ra/made/tools/analyze/interface/utils/vector.py +0 -56
  130. package/src/py/mat3ra/made/tools/analyze/interface/zsl.py +0 -259
  131. package/src/py/mat3ra/made/tools/analyze/interface_material.py +0 -45
  132. package/src/py/mat3ra/made/tools/analyze/lattice/__init__.py +0 -2
  133. package/src/py/mat3ra/made/tools/analyze/lattice/analyzer.py +0 -126
  134. package/src/py/mat3ra/made/tools/analyze/lattice/helpers.py +0 -31
  135. package/src/py/mat3ra/made/tools/analyze/lattice_lines.py +0 -30
  136. package/src/py/mat3ra/made/tools/analyze/lattice_planes.py +0 -192
  137. package/src/py/mat3ra/made/tools/analyze/lattice_swap_analyzer.py +0 -105
  138. package/src/py/mat3ra/made/tools/analyze/material.py +0 -276
  139. package/src/py/mat3ra/made/tools/analyze/other.py +0 -434
  140. package/src/py/mat3ra/made/tools/analyze/rdf.py +0 -74
  141. package/src/py/mat3ra/made/tools/analyze/slab.py +0 -76
  142. package/src/py/mat3ra/made/tools/analyze/solid_solution_analyzer.py +0 -171
  143. package/src/py/mat3ra/made/tools/analyze/terrace.py +0 -105
  144. package/src/py/mat3ra/made/tools/analyze/utils.py +0 -162
  145. package/src/py/mat3ra/made/tools/bond_directions/__init__.py +0 -0
  146. package/src/py/mat3ra/made/tools/bond_directions/bond_directions.py +0 -150
  147. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_for_element_list.py +0 -7
  148. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_enum.py +0 -8
  149. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_for_element.py +0 -16
  150. package/src/py/mat3ra/made/tools/build/__init__.py +0 -25
  151. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/__init__.py +0 -7
  152. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/helpers.py +0 -59
  153. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/types.py +0 -26
  154. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/utils.py +0 -139
  155. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/__init__.py +0 -47
  156. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/__init__.py +0 -11
  157. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/build_parameters.py +0 -5
  158. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/builder.py +0 -164
  159. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/configuration.py +0 -48
  160. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/helpers.py +0 -134
  161. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/__init__.py +0 -6
  162. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/helpers.py +0 -157
  163. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/enums.py +0 -7
  164. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/__init__.py +0 -7
  165. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/configuration.py +0 -13
  166. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/helpers.py +0 -70
  167. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/utils.py +0 -87
  168. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/__init__.py +0 -6
  169. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/helpers.py +0 -129
  170. package/src/py/mat3ra/made/tools/build/defective_structures/__init__.py +0 -0
  171. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/__init__.py +0 -0
  172. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/__init__.py +0 -0
  173. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/build_parameters.py +0 -12
  174. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/builder.py +0 -17
  175. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/configuration.py +0 -40
  176. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/helpers.py +0 -82
  177. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/__init__.py +0 -1
  178. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/__init__.py +0 -9
  179. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/builder.py +0 -37
  180. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/configuration.py +0 -30
  181. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/enums.py +0 -8
  182. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/helpers.py +0 -76
  183. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/__init__.py +0 -0
  184. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/__init__.py +0 -0
  185. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/builder.py +0 -11
  186. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/configuration.py +0 -18
  187. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/helpers.py +0 -137
  188. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/types.py +0 -22
  189. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/__init__.py +0 -0
  190. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/builder.py +0 -28
  191. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/configuration.py +0 -55
  192. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/helpers.py +0 -75
  193. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/builder.py +0 -15
  194. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/configuration.py +0 -16
  195. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/helpers.py +0 -116
  196. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/build_parameters.py +0 -10
  197. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/builder.py +0 -30
  198. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/configuration.py +0 -11
  199. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/helpers.py +0 -78
  200. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/__init__.py +0 -0
  201. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/__init__.py +0 -0
  202. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/builder.py +0 -31
  203. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/configuration.py +0 -45
  204. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/helpers.py +0 -80
  205. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/__init__.py +0 -40
  206. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/atom_placement_method_enum.py +0 -14
  207. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/__init__.py +0 -7
  208. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/builder.py +0 -42
  209. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/configuration.py +0 -27
  210. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/complex_defect_type_enum.py +0 -5
  211. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/factories.py +0 -69
  212. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/helpers.py +0 -92
  213. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/__init__.py +0 -7
  214. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/builder.py +0 -8
  215. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/configuration.py +0 -29
  216. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/helpers.py +0 -48
  217. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/interstitial_placement_method_enum.py +0 -8
  218. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/point_defect_type_enum.py +0 -8
  219. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/__init__.py +0 -7
  220. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/builder.py +0 -6
  221. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/configuration.py +0 -41
  222. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/helpers.py +0 -43
  223. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/substitution_placement_method_enum.py +0 -7
  224. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/types.py +0 -24
  225. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/__init__.py +0 -7
  226. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/builder.py +0 -19
  227. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/configuration.py +0 -27
  228. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/helpers.py +0 -42
  229. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/vacancy_placement_method_enum.py +0 -7
  230. package/src/py/mat3ra/made/tools/build/pristine_structures/__init__.py +0 -0
  231. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/__init__.py +0 -0
  232. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/builder.py +0 -80
  233. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/configurations.py +0 -22
  234. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/helpers.py +0 -40
  235. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/__init__.py +0 -0
  236. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/__init__.py +0 -29
  237. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/build_parameters.py +0 -5
  238. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/builders.py +0 -56
  239. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/configuration.py +0 -33
  240. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/helpers.py +0 -76
  241. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/__init__.py +0 -11
  242. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/build_parameters.py +0 -9
  243. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/builders.py +0 -83
  244. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/configuration.py +0 -35
  245. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/helpers.py +0 -62
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  487. package/tests/py/unit/test_tools_analyze.py +0 -219
  488. package/tests/py/unit/test_tools_analyze_basis.py +0 -105
  489. package/tests/py/unit/test_tools_analyze_interface.py +0 -223
  490. package/tests/py/unit/test_tools_analyze_interface_material.py +0 -63
  491. package/tests/py/unit/test_tools_analyze_interface_zsl.py +0 -187
  492. package/tests/py/unit/test_tools_analyze_lattice.py +0 -74
  493. package/tests/py/unit/test_tools_analyze_swap.py +0 -80
  494. package/tests/py/unit/test_tools_build.py +0 -158
  495. package/tests/py/unit/test_tools_build_defect/__init__.py +0 -0
  496. package/tests/py/unit/test_tools_build_defect/test_adatom.py +0 -84
  497. package/tests/py/unit/test_tools_build_defect/test_island.py +0 -45
  498. package/tests/py/unit/test_tools_build_defect/test_pair_defect.py +0 -84
  499. package/tests/py/unit/test_tools_build_defect/test_point_defect.py +0 -196
  500. package/tests/py/unit/test_tools_build_defect/test_slab_stack.py +0 -30
  501. package/tests/py/unit/test_tools_build_defect/test_solid_solution.py +0 -90
  502. package/tests/py/unit/test_tools_build_defect/test_terrace.py +0 -44
  503. package/tests/py/unit/test_tools_build_grain_boundary.py +0 -133
  504. package/tests/py/unit/test_tools_build_heterostructure.py +0 -46
  505. package/tests/py/unit/test_tools_build_interface.py +0 -292
  506. package/tests/py/unit/test_tools_build_interface_zsl.py +0 -263
  507. package/tests/py/unit/test_tools_build_maxwell_disorder.py +0 -123
  508. package/tests/py/unit/test_tools_build_metadata.py +0 -79
  509. package/tests/py/unit/test_tools_build_monolayer.py +0 -33
  510. package/tests/py/unit/test_tools_build_nanoparticle.py +0 -42
  511. package/tests/py/unit/test_tools_build_nanoribbon.py +0 -45
  512. package/tests/py/unit/test_tools_build_passivation.py +0 -85
  513. package/tests/py/unit/test_tools_build_perturbation.py +0 -103
  514. package/tests/py/unit/test_tools_build_slab.py +0 -382
  515. package/tests/py/unit/test_tools_build_strain.py +0 -36
  516. package/tests/py/unit/test_tools_build_supercell.py +0 -47
  517. package/tests/py/unit/test_tools_calculate.py +0 -67
  518. package/tests/py/unit/test_tools_convert.py +0 -174
  519. package/tests/py/unit/test_tools_modify.py +0 -248
  520. package/tests/py/unit/utils.py +0 -142
  521. package/tsconfig-transpile.json +0 -3
  522. package/tsconfig.json +0 -3
@@ -1,606 +0,0 @@
1
- import copy
2
- from typing import Any, Dict
3
-
4
- from .bulk import BULK_Si_CONVENTIONAL, BULK_Si_PRIMITIVE # , SI_CONVENTIONAL_CELL_FILTERED
5
-
6
- SI_SLAB_001_CONFIGURATION_FROM_PRIMITIVE = {
7
- "type": "SlabConfiguration",
8
- "bulk": BULK_Si_PRIMITIVE,
9
- "miller_indices": (0, 0, 1),
10
- "number_of_layers": 2,
11
- "vacuum": 5.0,
12
- "xy_supercell_matrix": [[1, 0], [0, 1]],
13
- "use_conventional_cell": False,
14
- }
15
-
16
- CREATE_SLAB_PARAMETERS_SI_001_USE_CONVENTIONAL: Dict[str, Any] = {
17
- "bulk": BULK_Si_CONVENTIONAL,
18
- "miller_indices": (0, 0, 1),
19
- "number_of_layers": 2,
20
- "vacuum": 5.0,
21
- "xy_supercell_matrix": [[1, 0], [0, 1]],
22
- "use_conventional_cell": True,
23
- }
24
-
25
- SI_SLAB_001_BUILD_PARAMETERS: Dict[str, Any] = {
26
- "min_vacuum_size": 0.0,
27
- "reorient_lattice": True,
28
- "symmetrize": True,
29
- "make_primitive": False,
30
- "use_orthogonal_c": True,
31
- }
32
-
33
-
34
- SI_SLAB_001_2_ATOMS: Dict[str, Any] = {
35
- "name": "Si(001), termination Si_P4/mmm_1, Slab",
36
- "basis": {
37
- "elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Si"}],
38
- "coordinates": [
39
- {"id": 0, "value": [0.583333333, 0.833333333, 0.241911889]},
40
- {"id": 1, "value": [0.25, 0.5, 0.145147133]},
41
- ],
42
- "units": "crystal",
43
- "constraints": [],
44
- "labels": [],
45
- },
46
- "lattice": {
47
- "a": 3.867,
48
- "b": 3.867,
49
- "c": 8.157392279,
50
- "alpha": 90.0,
51
- "beta": 90.0,
52
- "gamma": 60.0,
53
- "units": {"length": "angstrom", "angle": "degree"},
54
- "type": "TRI",
55
- },
56
- "isNonPeriodic": False,
57
- "metadata": {
58
- "boundaryConditions": {"type": "pbc", "offset": 0},
59
- "build": [
60
- {
61
- "configuration": CREATE_SLAB_PARAMETERS_SI_001_USE_CONVENTIONAL,
62
- "build_parameters": SI_SLAB_001_BUILD_PARAMETERS,
63
- }
64
- ],
65
- },
66
- }
67
-
68
- SI_CONVENTIONAL_SLAB_001: Dict[str, Any] = {
69
- "name": "Si(001), termination Si_P4/mmm_2, Slab",
70
- "basis": {
71
- "constraints": [],
72
- "coordinates": [
73
- {"id": 0, "value": [0.5, 0.0, 0.257353832]},
74
- {"id": 1, "value": [0.25, 0.25, 0.17156945]},
75
- {"id": 2, "value": [0.5, 0.5, 0.085785068]},
76
- {"id": 3, "value": [0.25, 0.75, 6.86e-07]},
77
- {"id": 4, "value": [0.0, 0.0, 0.085785068]},
78
- {"id": 5, "value": [0.75, 0.25, 6.86e-07]},
79
- {"id": 6, "value": [0.0, 0.5, 0.257353832]},
80
- {"id": 7, "value": [0.75, 0.75, 0.17156945]},
81
- {"id": 8, "value": [0.5, 0.0, 0.600491359]},
82
- {"id": 9, "value": [0.25, 0.25, 0.514706977]},
83
- {"id": 10, "value": [0.5, 0.5, 0.428922596]},
84
- {"id": 11, "value": [0.25, 0.75, 0.343138214]},
85
- {"id": 12, "value": [0.0, 0.0, 0.428922596]},
86
- {"id": 13, "value": [0.75, 0.25, 0.343138214]},
87
- {"id": 14, "value": [0.0, 0.5, 0.600491359]},
88
- {"id": 15, "value": [0.75, 0.75, 0.514706977]},
89
- ],
90
- "elements": [
91
- {"id": 0, "value": "Si"},
92
- {"id": 1, "value": "Si"},
93
- {"id": 2, "value": "Si"},
94
- {"id": 3, "value": "Si"},
95
- {"id": 4, "value": "Si"},
96
- {"id": 5, "value": "Si"},
97
- {"id": 6, "value": "Si"},
98
- {"id": 7, "value": "Si"},
99
- {"id": 8, "value": "Si"},
100
- {"id": 9, "value": "Si"},
101
- {"id": 10, "value": "Si"},
102
- {"id": 11, "value": "Si"},
103
- {"id": 12, "value": "Si"},
104
- {"id": 13, "value": "Si"},
105
- {"id": 14, "value": "Si"},
106
- {"id": 15, "value": "Si"},
107
- ],
108
- "labels": [],
109
- "units": "crystal",
110
- },
111
- "lattice": {
112
- "a": 5.468763846,
113
- "b": 5.468763846,
114
- "c": 15.937527692,
115
- "alpha": 90.0,
116
- "beta": 90.0,
117
- "gamma": 90.0,
118
- "units": {"length": "angstrom", "angle": "degree"},
119
- },
120
- "isNonPeriodic": False,
121
- "metadata": {
122
- "boundaryConditions": {"type": "pbc", "offset": 0},
123
- "build": [
124
- {
125
- "configuration": {
126
- "type": "SlabConfiguration",
127
- "stack_components": [
128
- {
129
- "crystal": BULK_Si_CONVENTIONAL,
130
- "miller_indices": [0, 0, 1],
131
- "number_of_repetitions": 2,
132
- "termination_top": {"chemical_elements": "Si", "space_group_symmetry_label": "P4/mmm_2"},
133
- "use_conventional_cell": True,
134
- },
135
- {"type": "VacuumConfiguration", "direction": "z", "size": 5.0, "crystal": BULK_Si_CONVENTIONAL},
136
- ],
137
- # TODO: should be in `build_parameters`
138
- "xy_supercell_matrix": [[1, 0], [0, 1]],
139
- },
140
- }
141
- ],
142
- },
143
- }
144
-
145
- SLAB_SI_CONVENTIONAL_001_NO_VACUUM: Dict[str, Any] = {
146
- "name": "Si(001), termination Si_P4/mmm_2, Slab",
147
- "basis": {
148
- "elements": [
149
- {"id": 0, "value": "Si"},
150
- {"id": 1, "value": "Si"},
151
- {"id": 2, "value": "Si"},
152
- {"id": 3, "value": "Si"},
153
- {"id": 4, "value": "Si"},
154
- {"id": 5, "value": "Si"},
155
- {"id": 6, "value": "Si"},
156
- {"id": 7, "value": "Si"},
157
- {"id": 8, "value": "Si"},
158
- {"id": 9, "value": "Si"},
159
- {"id": 10, "value": "Si"},
160
- {"id": 11, "value": "Si"},
161
- {"id": 12, "value": "Si"},
162
- {"id": 13, "value": "Si"},
163
- {"id": 14, "value": "Si"},
164
- {"id": 15, "value": "Si"},
165
- ],
166
- "coordinates": [
167
- {"id": 0, "value": [0.5, 0, 0.375001]},
168
- {"id": 1, "value": [0.25, 0.25, 0.250001]},
169
- {"id": 2, "value": [0.5, 0.5, 0.125001]},
170
- {"id": 3, "value": [0.25, 0.75, 0.000001]},
171
- {"id": 4, "value": [0, 0, 0.125001]},
172
- {"id": 5, "value": [0.75, 0.25, 0.000001]},
173
- {"id": 6, "value": [0, 0.5, 0.375001]},
174
- {"id": 7, "value": [0.75, 0.75, 0.250001]},
175
- {"id": 8, "value": [0.5, 0, 0.875001]},
176
- {"id": 9, "value": [0.25, 0.25, 0.750001]},
177
- {"id": 10, "value": [0.5, 0.5, 0.625001]},
178
- {"id": 11, "value": [0.25, 0.75, 0.500001]},
179
- {"id": 12, "value": [0, 0, 0.625001]},
180
- {"id": 13, "value": [0.75, 0.25, 0.500001]},
181
- {"id": 14, "value": [0, 0.5, 0.875001]},
182
- {"id": 15, "value": [0.75, 0.75, 0.750001]},
183
- ],
184
- "units": "crystal",
185
- "labels": [],
186
- "constraints": [],
187
- },
188
- "lattice": {
189
- "a": 5.468763846,
190
- "b": 5.468763846,
191
- "c": 10.937527692,
192
- "alpha": 90,
193
- "beta": 90,
194
- "gamma": 90,
195
- "units": {"length": "angstrom", "angle": "degree"},
196
- "type": "TRI",
197
- },
198
- "metadata": {
199
- "boundaryConditions": {"type": "pbc", "offset": 0},
200
- },
201
- }
202
-
203
-
204
- SI_PRIMITIVE_SLAB_001: Dict[str, Any] = {
205
- "name": "Si(001), termination Si_P4/mmm_2, Slab",
206
- "basis": {
207
- "elements": [
208
- {"id": 0, "value": "Si"},
209
- {"id": 1, "value": "Si"},
210
- {"id": 2, "value": "Si"},
211
- {"id": 3, "value": "Si"},
212
- ],
213
- "coordinates": [
214
- {"id": 0, "value": [0.250000667, 0.250000667, 0.227757008]},
215
- {"id": 1, "value": [0.250000666, 0.250000666, 6.07e-07]},
216
- {"id": 2, "value": [0.583334, 0.583334, 0.531432208]},
217
- {"id": 3, "value": [0.583334, 0.583334, 0.303675808]},
218
- ],
219
- "units": "crystal",
220
- "labels": [],
221
- "constraints": [],
222
- },
223
- "lattice": {
224
- "a": 3.867,
225
- "b": 3.867,
226
- "c": 10.397267462,
227
- "alpha": 90.0,
228
- "beta": 90.0,
229
- "gamma": 60.0,
230
- "units": {"length": "angstrom", "angle": "degree"},
231
- "type": "TRI",
232
- },
233
- "metadata": {
234
- "boundaryConditions": {"type": "pbc", "offset": 0},
235
- "build": [
236
- {
237
- "configuration": {
238
- "type": "SlabConfiguration",
239
- "stack_components": [
240
- {
241
- "crystal": BULK_Si_PRIMITIVE,
242
- "miller_indices": [0, 0, 1],
243
- "number_of_repetitions": 2,
244
- "termination_top": {"chemical_elements": "Si", "space_group_symmetry_label": "P4/mmm_2"},
245
- "use_conventional_cell": False,
246
- },
247
- {"type": "VacuumConfiguration", "direction": "z", "size": 5.0},
248
- ],
249
- },
250
- "build_parameters": {"use_orthogonal_c": True, "xy_supercell_matrix": [[1, 0], [0, 1]]},
251
- }
252
- ],
253
- },
254
- }
255
-
256
- SI_SLAB_001_WITH_VACUUM = copy.deepcopy(SI_SLAB_001_2_ATOMS)
257
- SI_SLAB_001_WITH_VACUUM["lattice"]["c"] = 13.157392279
258
- # The crystal xy coordinates are the same as SI_SLAB_001, but the z-coordinates are different
259
- SI_SLAB_001_WITH_VACUUM["basis"]["coordinates"] = [
260
- {"id": 0, "value": [0.583333333, 0.833333333, 0.149981861]},
261
- {"id": 1, "value": [0.25, 0.5, 0.089989116]},
262
- ]
263
-
264
- SI_SLAB_DEFAULT_PARAMETERS = {
265
- "basis": {
266
- "constraints": [],
267
- "coordinates": [
268
- {"id": 0, "value": [0.5, 0, 0.309343941]},
269
- {"id": 1, "value": [0.25, 0.25, 0.220959958]},
270
- {"id": 2, "value": [0.5, 0.5, 0.132575975]},
271
- {"id": 3, "value": [0.25, 0.75, 0.044191992]},
272
- {"id": 4, "value": [0, 0, 0.132575975]},
273
- {"id": 5, "value": [0.75, 0.25, 0.044191992]},
274
- {"id": 6, "value": [0, 0.5, 0.309343941]},
275
- {"id": 7, "value": [0.75, 0.75, 0.220959958]},
276
- ],
277
- "elements": [
278
- {"id": 0, "value": "Si"},
279
- {"id": 1, "value": "Si"},
280
- {"id": 2, "value": "Si"},
281
- {"id": 3, "value": "Si"},
282
- {"id": 4, "value": "Si"},
283
- {"id": 5, "value": "Si"},
284
- {"id": 6, "value": "Si"},
285
- {"id": 7, "value": "Si"},
286
- ],
287
- "labels": [],
288
- "units": "crystal",
289
- },
290
- "isDefault": False,
291
- "isNonPeriodic": False,
292
- "lattice": {
293
- "a": 5.468763846,
294
- "b": 5.468763846,
295
- "c": 15.468763846,
296
- "alpha": 90.0,
297
- "beta": 90.0,
298
- "gamma": 90.0,
299
- "type": "TRI",
300
- "units": {"angle": "degree", "length": "angstrom"},
301
- },
302
- "metadata": {
303
- "boundaryConditions": {"offset": 0, "type": "pbc"},
304
- "build": [
305
- {
306
- "configuration": {
307
- "type": "SlabConfiguration",
308
- "stack_components": [
309
- {
310
- "crystal": BULK_Si_CONVENTIONAL,
311
- "miller_indices": [0, 0, 1],
312
- "number_of_repetitions": 1,
313
- "termination_top": {"chemical_elements": "Si", "space_group_symmetry_label": "P4/mmm_2"},
314
- "use_conventional_cell": True,
315
- },
316
- {"type": "VacuumConfiguration", "direction": "z", "size": 10.0},
317
- ],
318
- "xy_supercell_matrix": [[1, 0], [0, 1]],
319
- },
320
- }
321
- ],
322
- },
323
- "name": "Si(001), termination Si_P4/mmm_2, Slab",
324
- }
325
-
326
- SI_SLAB_001_ADDED_LAYER = {
327
- "name": "Si(001), termination Si_P4/mmm_2, Slab, Slab Stack",
328
- "basis": {
329
- "elements": [
330
- {"id": 0, "value": "Si"},
331
- {"id": 1, "value": "Si"},
332
- {"id": 2, "value": "Si"},
333
- {"id": 3, "value": "Si"},
334
- {"id": 4, "value": "Si"},
335
- {"id": 5, "value": "Si"},
336
- {"id": 6, "value": "Si"},
337
- {"id": 7, "value": "Si"},
338
- {"id": 8, "value": "Si"},
339
- {"id": 9, "value": "Si"},
340
- {"id": 10, "value": "Si"},
341
- {"id": 11, "value": "Si"},
342
- {"id": 12, "value": "Si"},
343
- {"id": 13, "value": "Si"},
344
- {"id": 14, "value": "Si"},
345
- {"id": 15, "value": "Si"},
346
- {"id": 16, "value": "Si"},
347
- {"id": 17, "value": "Si"},
348
- {"id": 18, "value": "Si"},
349
- {"id": 19, "value": "Si"},
350
- {"id": 20, "value": "Si"},
351
- {"id": 21, "value": "Si"},
352
- {"id": 22, "value": "Si"},
353
- {"id": 23, "value": "Si"},
354
- ],
355
- "coordinates": [
356
- {"id": 0, "value": [0.5, 0.0, 0.191606953]},
357
- {"id": 1, "value": [0.25, 0.25, 0.127738302]},
358
- {"id": 2, "value": [0.5, 0.5, 0.063869651]},
359
- {"id": 3, "value": [0.25, 0.75, 1e-06]},
360
- {"id": 4, "value": [0.0, 0.0, 0.063869651]},
361
- {"id": 5, "value": [0.75, 0.25, 1e-06]},
362
- {"id": 6, "value": [0, 0.5, 0.191606953]},
363
- {"id": 7, "value": [0.75, 0.75, 0.127738302]},
364
- {"id": 8, "value": [0.5, 0.0, 0.447081557]},
365
- {"id": 9, "value": [0.25, 0.25, 0.383212906]},
366
- {"id": 10, "value": [0.5, 0.5, 0.319344254]},
367
- {"id": 11, "value": [0.25, 0.75, 0.255475604]},
368
- {"id": 12, "value": [0.0, 0.0, 0.319344254]},
369
- {"id": 13, "value": [0.75, 0.25, 0.255475604]},
370
- {"id": 14, "value": [0.0, 0.5, 0.447081557]},
371
- {"id": 15, "value": [0.75, 0.75, 0.383212906]},
372
- {"id": 16, "value": [0.5, 0.0, 0.70255616]},
373
- {"id": 17, "value": [0.25, 0.25, 0.638687509]},
374
- {"id": 18, "value": [0.5, 0.5, 0.574818859]},
375
- {"id": 19, "value": [0.25, 0.75, 0.510950207]},
376
- {"id": 20, "value": [0.0, 0.0, 0.574818859]},
377
- {"id": 21, "value": [0.75, 0.25, 0.510950207]},
378
- {"id": 22, "value": [0.0, 0.5, 0.70255616]},
379
- {"id": 23, "value": [0.75, 0.75, 0.638687509]},
380
- ],
381
- "units": "crystal",
382
- "labels": [],
383
- "constraints": [],
384
- },
385
- "lattice": {
386
- "a": 5.468763846,
387
- "b": 5.468763846,
388
- "c": 21.406291538,
389
- "alpha": 90.0,
390
- "beta": 90.0,
391
- "gamma": 90.0,
392
- "units": {"length": "angstrom", "angle": "degree"},
393
- "type": "TRI",
394
- },
395
- }
396
-
397
- SI_SLAB_001_ADDED_FRACTIONAL_LAYER = {
398
- "name": "Si(001), termination Si_P4/mmm_2, Slab, Slab Stack",
399
- "basis": {
400
- "elements": [
401
- {"id": 0, "value": "Si"},
402
- {"id": 1, "value": "Si"},
403
- {"id": 2, "value": "Si"},
404
- {"id": 3, "value": "Si"},
405
- {"id": 4, "value": "Si"},
406
- {"id": 5, "value": "Si"},
407
- {"id": 6, "value": "Si"},
408
- {"id": 7, "value": "Si"},
409
- {"id": 8, "value": "Si"},
410
- {"id": 9, "value": "Si"},
411
- {"id": 10, "value": "Si"},
412
- {"id": 11, "value": "Si"},
413
- {"id": 12, "value": "Si"},
414
- {"id": 13, "value": "Si"},
415
- {"id": 14, "value": "Si"},
416
- {"id": 15, "value": "Si"},
417
- {"id": 16, "value": "Si"},
418
- {"id": 17, "value": "Si"},
419
- {"id": 18, "value": "Si"},
420
- {"id": 19, "value": "Si"},
421
- {"id": 20, "value": "Si"},
422
- {"id": 21, "value": "Si"},
423
- {"id": 22, "value": "Si"},
424
- {"id": 23, "value": "Si"},
425
- {"id": 24, "value": "Si"},
426
- {"id": 25, "value": "Si"},
427
- {"id": 26, "value": "Si"},
428
- {"id": 27, "value": "Si"},
429
- ],
430
- "coordinates": [
431
- {"id": 0, "value": [0.5, 0.0, 0.152616961]},
432
- {"id": 1, "value": [0.25, 0.25, 0.101744844]},
433
- {"id": 2, "value": [0.5, 0.5, 0.050872727]},
434
- {"id": 3, "value": [0.25, 0.75, 6.1e-07]},
435
- {"id": 4, "value": [0.0, 0.0, 0.050872727]},
436
- {"id": 5, "value": [0.75, 0.25, 6.1e-07]},
437
- {"id": 6, "value": [0.0, 0.5, 0.152616961]},
438
- {"id": 7, "value": [0.75, 0.75, 0.101744844]},
439
- {"id": 8, "value": [0.5, 0.0, 0.356105429]},
440
- {"id": 9, "value": [0.25, 0.25, 0.305233312]},
441
- {"id": 10, "value": [0.5, 0.5, 0.254361195]},
442
- {"id": 11, "value": [0.25, 0.75, 0.203489078]},
443
- {"id": 12, "value": [0.0, 0.0, 0.254361195]},
444
- {"id": 13, "value": [0.75, 0.25, 0.203489078]},
445
- {"id": 14, "value": [0.0, 0.5, 0.356105429]},
446
- {"id": 15, "value": [0.75, 0.75, 0.305233312]},
447
- {"id": 16, "value": [0.5, 0.0, 0.559593897]},
448
- {"id": 17, "value": [0.25, 0.25, 0.50872178]},
449
- {"id": 18, "value": [0.5, 0.5, 0.457849663]},
450
- {"id": 19, "value": [0.25, 0.75, 0.406977546]},
451
- {"id": 20, "value": [0.0, 0.0, 0.457849663]},
452
- {"id": 21, "value": [0.75, 0.25, 0.406977546]},
453
- {"id": 22, "value": [0.0, 0.5, 0.559593897]},
454
- {"id": 23, "value": [0.75, 0.75, 0.50872178]},
455
- {"id": 24, "value": [0.5, 0.5, 0.661337724]},
456
- {"id": 25, "value": [0.25, 0.75, 0.610465607]},
457
- {"id": 26, "value": [0.0, 0.0, 0.661337724]},
458
- {"id": 27, "value": [0.75, 0.25, 0.610465607]},
459
- ],
460
- "units": "crystal",
461
- "labels": [],
462
- "constraints": [],
463
- },
464
- "lattice": {
465
- "a": 5.468763846,
466
- "b": 5.468763846,
467
- "c": 26.875055384,
468
- "alpha": 90.0,
469
- "beta": 90.0,
470
- "gamma": 90.0,
471
- "units": {"length": "angstrom", "angle": "degree"},
472
- "type": "TRI",
473
- },
474
- }
475
-
476
- SLAB_SrTiO3_011_TERMINATION_O2 = {
477
- "metadata": {"boundaryConditions": {"type": "pbc", "offset": 0}},
478
- "name": "O3SrTi(011), termination O2_Pmmm_2, Slab",
479
- "basis": {
480
- "elements": [
481
- {"id": 0, "value": "Sr"},
482
- {"id": 1, "value": "Ti"},
483
- {"id": 2, "value": "O"},
484
- {"id": 3, "value": "O"},
485
- {"id": 4, "value": "O"},
486
- {"id": 5, "value": "Sr"},
487
- {"id": 6, "value": "Ti"},
488
- {"id": 7, "value": "O"},
489
- {"id": 8, "value": "O"},
490
- {"id": 9, "value": "O"},
491
- ],
492
- "coordinates": [
493
- {"id": 0, "value": [0, 0.999999, 6.1e-7]},
494
- {"id": 1, "value": [0.5, 0.499999, 6.1e-7]},
495
- {"id": 2, "value": [0.5, 0.249999, 0.152537778]},
496
- {"id": 3, "value": [0.5, 0.749999, 0.152537778]},
497
- {"id": 4, "value": [0, 0.499999, 6.1e-7]},
498
- {"id": 5, "value": [0, 0.499999, 0.305074946]},
499
- {"id": 6, "value": [0.5, 0.999999, 0.305074946]},
500
- {"id": 7, "value": [0.5, 0.749999, 0.457612114]},
501
- {"id": 8, "value": [0.5, 0.249999, 0.457612114]},
502
- {"id": 9, "value": [0, 0.999999, 0.305074946]},
503
- ],
504
- "units": "crystal",
505
- "labels": [],
506
- "constraints": [],
507
- },
508
- "lattice": {
509
- "a": 3.912701,
510
- "b": 5.53339482,
511
- "c": 9.068928726,
512
- "alpha": 90,
513
- "beta": 90,
514
- "gamma": 90,
515
- "units": {"length": "angstrom", "angle": "degree"},
516
- "type": "TRI",
517
- },
518
- }
519
-
520
- SLAB_SrTiO3_011_TERMINATION_SrTiO = {
521
- "metadata": {"boundaryConditions": {"type": "pbc", "offset": 0}},
522
- "name": "O3SrTi(011), termination SrTiO_Pmmm_3, Slab",
523
- "basis": {
524
- "elements": [
525
- {"id": 0, "value": "Sr"},
526
- {"id": 1, "value": "Ti"},
527
- {"id": 2, "value": "O"},
528
- {"id": 3, "value": "O"},
529
- {"id": 4, "value": "O"},
530
- {"id": 5, "value": "Sr"},
531
- {"id": 6, "value": "Ti"},
532
- {"id": 7, "value": "O"},
533
- {"id": 8, "value": "O"},
534
- {"id": 9, "value": "O"},
535
- ],
536
- "coordinates": [
537
- {"id": 0, "value": [0, 0.749999, 0.152537778]},
538
- {"id": 1, "value": [0.5, 0.249999, 0.152537778]},
539
- {"id": 2, "value": [0.5, 0.499999, 6.1e-7]},
540
- {"id": 3, "value": [0.5, 0.999999, 6.1e-7]},
541
- {"id": 4, "value": [0, 0.249999, 0.152537778]},
542
- {"id": 5, "value": [0, 0.249999, 0.457612114]},
543
- {"id": 6, "value": [0.5, 0.749999, 0.457612114]},
544
- {"id": 7, "value": [0.5, 0.999999, 0.305074946]},
545
- {"id": 8, "value": [0.5, 0.499999, 0.305074946]},
546
- {"id": 9, "value": [0, 0.749999, 0.457612114]},
547
- ],
548
- "units": "crystal",
549
- "labels": [],
550
- "constraints": [],
551
- },
552
- "lattice": {
553
- "a": 3.912701,
554
- "b": 5.53339482,
555
- "c": 9.068928726,
556
- "alpha": 90,
557
- "beta": 90,
558
- "gamma": 90,
559
- "units": {"length": "angstrom", "angle": "degree"},
560
- "type": "TRI",
561
- },
562
- }
563
-
564
-
565
- SLAB_SrTiO3_011_TERMINATION_O2_BOTTOM = {
566
- "name": "O3SrTi(011), bottom termination O2_Pmmm_2, Slab",
567
- "basis": {
568
- "elements": [
569
- {"id": 0, "value": "Sr"},
570
- {"id": 1, "value": "Ti"},
571
- {"id": 2, "value": "O"},
572
- {"id": 3, "value": "O"},
573
- {"id": 4, "value": "O"},
574
- {"id": 5, "value": "Sr"},
575
- {"id": 6, "value": "Ti"},
576
- {"id": 7, "value": "O"},
577
- {"id": 8, "value": "O"},
578
- {"id": 9, "value": "O"},
579
- ],
580
- "coordinates": [
581
- {"id": 0, "value": [0.5, 0.749999, 0.152537778]},
582
- {"id": 1, "value": [0, 0.249999, 0.152537778]},
583
- {"id": 2, "value": [0.5, 0.249999, 0.152537778]},
584
- {"id": 3, "value": [0, 0.999999, 6.1e-7]},
585
- {"id": 4, "value": [0, 0.499999, 6.1e-7]},
586
- {"id": 5, "value": [0.5, 0.249999, 0.457612114]},
587
- {"id": 6, "value": [0, 0.749999, 0.457612114]},
588
- {"id": 7, "value": [0.5, 0.749999, 0.457612114]},
589
- {"id": 8, "value": [0, 0.499999, 0.305074946]},
590
- {"id": 9, "value": [0, 0.999999, 0.305074946]},
591
- ],
592
- "units": "crystal",
593
- "labels": [],
594
- "constraints": [],
595
- },
596
- "lattice": {
597
- "a": 3.912701,
598
- "b": 5.53339482,
599
- "c": 9.068928726,
600
- "alpha": 90,
601
- "beta": 90,
602
- "gamma": 90,
603
- "units": {"length": "angstrom", "angle": "degree"},
604
- "type": "TRI",
605
- },
606
- }
@@ -1,42 +0,0 @@
1
- from typing import Final
2
-
3
- BULK_Si_CONVENTIONAL_STRAINED: Final = {
4
- "name": "Si8",
5
- "basis": {
6
- "elements": [
7
- {"id": 0, "value": "Si"},
8
- {"id": 1, "value": "Si"},
9
- {"id": 2, "value": "Si"},
10
- {"id": 3, "value": "Si"},
11
- {"id": 4, "value": "Si"},
12
- {"id": 5, "value": "Si"},
13
- {"id": 6, "value": "Si"},
14
- {"id": 7, "value": "Si"},
15
- ],
16
- "coordinates": [
17
- {"id": 0, "value": [0.5, 0.0, 0.0]},
18
- {"id": 1, "value": [0.25, 0.25, 0.75]},
19
- {"id": 2, "value": [0.5, 0.5, 0.5]},
20
- {"id": 3, "value": [0.25, 0.75, 0.25]},
21
- {"id": 4, "value": [0.0, 0.0, 0.5]},
22
- {"id": 5, "value": [0.75, 0.25, 0.25]},
23
- {"id": 6, "value": [0.0, 0.5, 0.0]},
24
- {"id": 7, "value": [0.75, 0.75, 0.75]},
25
- ],
26
- "units": "crystal",
27
- "constraints": [],
28
- "labels": [],
29
- },
30
- "lattice": {
31
- "a": 6.01564,
32
- "b": 6.01564,
33
- "c": 5.468763846,
34
- "alpha": 90.0,
35
- "beta": 90.0,
36
- "gamma": 90.0,
37
- "units": {"length": "angstrom", "angle": "degree"},
38
- "type": "TRI",
39
- },
40
- "isNonPeriodic": False,
41
- "metadata": {"boundaryConditions": {"type": "pbc", "offset": 0}},
42
- }