@mat3ra/made 2026.8.7-0 → 2026.8.18-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (522) hide show
  1. package/dist/js/Material.d.ts +219 -0
  2. package/dist/js/Material.js +457 -0
  3. package/dist/js/basis/basis.d.ts +14 -9
  4. package/dist/js/basis/basis.js +15 -13
  5. package/dist/js/basis/constrained_basis.d.ts +9 -7
  6. package/dist/js/basis/constrained_basis.js +4 -4
  7. package/dist/js/generated/MaterialSchemaMixin.d.ts +5 -0
  8. package/dist/js/generated/MaterialSchemaMixin.js +69 -0
  9. package/dist/js/lattice/lattice.d.ts +4 -3
  10. package/dist/js/lattice/lattice.js +1 -2
  11. package/dist/js/made.d.ts +12 -12
  12. package/dist/js/made.js +38 -5
  13. package/dist/js/parsers/espresso.d.ts +2 -3
  14. package/dist/js/parsers/espresso.js +0 -1
  15. package/dist/js/parsers/native_format_parsers.d.ts +9 -8
  16. package/dist/js/parsers/native_format_parsers.js +6 -6
  17. package/dist/js/parsers/parsers.d.ts +6 -6
  18. package/dist/js/parsers/poscar.d.ts +5 -4
  19. package/dist/js/parsers/poscar.js +3 -2
  20. package/dist/js/parsers/xyz.d.ts +3 -5
  21. package/dist/js/parsers/xyz.js +3 -4
  22. package/dist/js/parsers/xyz_combinatorial_basis.js +3 -1
  23. package/dist/js/tools/basis.d.ts +1 -1
  24. package/dist/js/tools/index.d.ts +7 -7
  25. package/dist/js/tools/material.d.ts +1 -1
  26. package/dist/js/tools/material.js +8 -7
  27. package/dist/js/tools/supercell.d.ts +4 -5
  28. package/dist/js/tools/supercell.js +2 -4
  29. package/dist/js/tools/surface.d.ts +4 -4
  30. package/dist/js/tools/surface.js +2 -7
  31. package/package.json +12 -8
  32. package/.babelrc +0 -10
  33. package/.eslintrc.json +0 -11
  34. package/.gitattributes +0 -1
  35. package/.husky/post-checkout +0 -3
  36. package/.husky/post-commit +0 -3
  37. package/.husky/post-merge +0 -3
  38. package/.husky/pre-commit +0 -6
  39. package/.husky/pre-push +0 -3
  40. package/.mocharc.json +0 -5
  41. package/.pre-commit-config.yaml +0 -26
  42. package/.prettierignore +0 -2
  43. package/.prettierrc +0 -6
  44. package/AGENTS.md +0 -133
  45. package/MANIFEST.in +0 -1
  46. package/data/constants.json +0 -13
  47. package/data/reciprocal_paths.json +0 -111
  48. package/dist/js/material.d.ts +0 -169
  49. package/dist/js/material.js +0 -362
  50. package/images/made/tools/tools_diagram_general.png +0 -3
  51. package/images/made/tools/tools_diagram_interface.png +0 -3
  52. package/pyproject.toml +0 -123
  53. package/src/__init__.py +0 -0
  54. package/src/js/basis/basis.ts +0 -621
  55. package/src/js/basis/constrained_basis.ts +0 -114
  56. package/src/js/basis/coordinates.ts +0 -93
  57. package/src/js/basis/elements.ts +0 -24
  58. package/src/js/basis/helpers.ts +0 -20
  59. package/src/js/basis/labels.ts +0 -6
  60. package/src/js/cell/cell.ts +0 -150
  61. package/src/js/cell/conventional_cell.ts +0 -86
  62. package/src/js/cell/primitive_cell.ts +0 -166
  63. package/src/js/constants/molecule.ts +0 -18
  64. package/src/js/constants.ts +0 -4
  65. package/src/js/constraints/constraints.ts +0 -45
  66. package/src/js/lattice/lattice.ts +0 -306
  67. package/src/js/lattice/lattice_types.ts +0 -134
  68. package/src/js/lattice/reciprocal/lattice_reciprocal.ts +0 -193
  69. package/src/js/lattice/reciprocal/paths.ts +0 -39
  70. package/src/js/lattice/reciprocal/symmetry_points.ts +0 -886
  71. package/src/js/lattice/unit_cell.ts +0 -66
  72. package/src/js/made.ts +0 -62
  73. package/src/js/material.ts +0 -458
  74. package/src/js/parsers/cif.ts +0 -25
  75. package/src/js/parsers/errors.ts +0 -6
  76. package/src/js/parsers/espresso.ts +0 -30
  77. package/src/js/parsers/native_format_parsers.ts +0 -51
  78. package/src/js/parsers/parsers.ts +0 -13
  79. package/src/js/parsers/poscar.ts +0 -212
  80. package/src/js/parsers/xyz.ts +0 -187
  81. package/src/js/parsers/xyz_combinatorial_basis.ts +0 -265
  82. package/src/js/tools/basis.ts +0 -132
  83. package/src/js/tools/cell.ts +0 -41
  84. package/src/js/tools/index.ts +0 -11
  85. package/src/js/tools/material.ts +0 -62
  86. package/src/js/tools/supercell.ts +0 -88
  87. package/src/js/tools/surface.ts +0 -223
  88. package/src/py/__init__.py +0 -0
  89. package/src/py/mat3ra/__init__.py +0 -1
  90. package/src/py/mat3ra/made/__init__.py +0 -7
  91. package/src/py/mat3ra/made/basis/__init__.py +0 -255
  92. package/src/py/mat3ra/made/basis/coordinates.py +0 -43
  93. package/src/py/mat3ra/made/cell/__init__.py +0 -55
  94. package/src/py/mat3ra/made/cell/primitive_cell.py +0 -156
  95. package/src/py/mat3ra/made/data_helper.py +0 -5
  96. package/src/py/mat3ra/made/lattice.py +0 -195
  97. package/src/py/mat3ra/made/material.py +0 -134
  98. package/src/py/mat3ra/made/metadata.py +0 -45
  99. package/src/py/mat3ra/made/reciprocal/__init__.py +0 -5
  100. package/src/py/mat3ra/made/reciprocal/lattice_reciprocal.py +0 -147
  101. package/src/py/mat3ra/made/reciprocal/paths.py +0 -30
  102. package/src/py/mat3ra/made/reciprocal/symmetry_points.py +0 -385
  103. package/src/py/mat3ra/made/tools/README.md +0 -173
  104. package/src/py/mat3ra/made/tools/__init__.py +0 -0
  105. package/src/py/mat3ra/made/tools/analyze/__init__.py +0 -31
  106. package/src/py/mat3ra/made/tools/analyze/basis/__init__.py +0 -3
  107. package/src/py/mat3ra/made/tools/analyze/basis/analyzer.py +0 -50
  108. package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer.py +0 -32
  109. package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer_factory.py +0 -31
  110. package/src/py/mat3ra/made/tools/analyze/coordination.py +0 -56
  111. package/src/py/mat3ra/made/tools/analyze/crystal_site/__init__.py +0 -0
  112. package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_crystal_site_material_analyzer.py +0 -35
  113. package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_material_analyzer.py +0 -49
  114. package/src/py/mat3ra/made/tools/analyze/crystal_site/crystal_site_analyzer.py +0 -65
  115. package/src/py/mat3ra/made/tools/analyze/crystal_site/voronoi_crystal_site_analyzer.py +0 -47
  116. package/src/py/mat3ra/made/tools/analyze/enums.py +0 -33
  117. package/src/py/mat3ra/made/tools/analyze/fingerprint/__init__.py +0 -4
  118. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/__init__.py +0 -0
  119. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/layered_fingerprint_along_axis.py +0 -83
  120. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/unique_element_string_per_layer.py +0 -9
  121. package/src/py/mat3ra/made/tools/analyze/interface/__init__.py +0 -20
  122. package/src/py/mat3ra/made/tools/analyze/interface/commensurate.py +0 -156
  123. package/src/py/mat3ra/made/tools/analyze/interface/enums.py +0 -60
  124. package/src/py/mat3ra/made/tools/analyze/interface/grain_boundary.py +0 -80
  125. package/src/py/mat3ra/made/tools/analyze/interface/simple.py +0 -251
  126. package/src/py/mat3ra/made/tools/analyze/interface/twisted_nanoribbons.py +0 -91
  127. package/src/py/mat3ra/made/tools/analyze/interface/utils/__init__.py +0 -77
  128. package/src/py/mat3ra/made/tools/analyze/interface/utils/holders.py +0 -14
  129. package/src/py/mat3ra/made/tools/analyze/interface/utils/vector.py +0 -56
  130. package/src/py/mat3ra/made/tools/analyze/interface/zsl.py +0 -259
  131. package/src/py/mat3ra/made/tools/analyze/interface_material.py +0 -45
  132. package/src/py/mat3ra/made/tools/analyze/lattice/__init__.py +0 -2
  133. package/src/py/mat3ra/made/tools/analyze/lattice/analyzer.py +0 -126
  134. package/src/py/mat3ra/made/tools/analyze/lattice/helpers.py +0 -31
  135. package/src/py/mat3ra/made/tools/analyze/lattice_lines.py +0 -30
  136. package/src/py/mat3ra/made/tools/analyze/lattice_planes.py +0 -192
  137. package/src/py/mat3ra/made/tools/analyze/lattice_swap_analyzer.py +0 -105
  138. package/src/py/mat3ra/made/tools/analyze/material.py +0 -276
  139. package/src/py/mat3ra/made/tools/analyze/other.py +0 -434
  140. package/src/py/mat3ra/made/tools/analyze/rdf.py +0 -74
  141. package/src/py/mat3ra/made/tools/analyze/slab.py +0 -76
  142. package/src/py/mat3ra/made/tools/analyze/solid_solution_analyzer.py +0 -171
  143. package/src/py/mat3ra/made/tools/analyze/terrace.py +0 -105
  144. package/src/py/mat3ra/made/tools/analyze/utils.py +0 -162
  145. package/src/py/mat3ra/made/tools/bond_directions/__init__.py +0 -0
  146. package/src/py/mat3ra/made/tools/bond_directions/bond_directions.py +0 -150
  147. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_for_element_list.py +0 -7
  148. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_enum.py +0 -8
  149. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_for_element.py +0 -16
  150. package/src/py/mat3ra/made/tools/build/__init__.py +0 -25
  151. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/__init__.py +0 -7
  152. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/helpers.py +0 -59
  153. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/types.py +0 -26
  154. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/utils.py +0 -139
  155. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/__init__.py +0 -47
  156. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/__init__.py +0 -11
  157. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/build_parameters.py +0 -5
  158. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/builder.py +0 -164
  159. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/configuration.py +0 -48
  160. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/helpers.py +0 -134
  161. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/__init__.py +0 -6
  162. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/helpers.py +0 -157
  163. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/enums.py +0 -7
  164. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/__init__.py +0 -7
  165. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/configuration.py +0 -13
  166. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/helpers.py +0 -70
  167. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/utils.py +0 -87
  168. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/__init__.py +0 -6
  169. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/helpers.py +0 -129
  170. package/src/py/mat3ra/made/tools/build/defective_structures/__init__.py +0 -0
  171. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/__init__.py +0 -0
  172. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/__init__.py +0 -0
  173. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/build_parameters.py +0 -12
  174. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/builder.py +0 -17
  175. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/configuration.py +0 -40
  176. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/helpers.py +0 -82
  177. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/__init__.py +0 -1
  178. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/__init__.py +0 -9
  179. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/builder.py +0 -37
  180. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/configuration.py +0 -30
  181. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/enums.py +0 -8
  182. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/helpers.py +0 -76
  183. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/__init__.py +0 -0
  184. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/__init__.py +0 -0
  185. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/builder.py +0 -11
  186. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/configuration.py +0 -18
  187. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/helpers.py +0 -137
  188. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/types.py +0 -22
  189. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/__init__.py +0 -0
  190. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/builder.py +0 -28
  191. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/configuration.py +0 -55
  192. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/helpers.py +0 -75
  193. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/builder.py +0 -15
  194. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/configuration.py +0 -16
  195. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/helpers.py +0 -116
  196. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/build_parameters.py +0 -10
  197. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/builder.py +0 -30
  198. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/configuration.py +0 -11
  199. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/helpers.py +0 -78
  200. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/__init__.py +0 -0
  201. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/__init__.py +0 -0
  202. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/builder.py +0 -31
  203. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/configuration.py +0 -45
  204. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/helpers.py +0 -80
  205. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/__init__.py +0 -40
  206. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/atom_placement_method_enum.py +0 -14
  207. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/__init__.py +0 -7
  208. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/builder.py +0 -42
  209. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/configuration.py +0 -27
  210. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/complex_defect_type_enum.py +0 -5
  211. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/factories.py +0 -69
  212. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/helpers.py +0 -92
  213. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/__init__.py +0 -7
  214. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/builder.py +0 -8
  215. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/configuration.py +0 -29
  216. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/helpers.py +0 -48
  217. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/interstitial_placement_method_enum.py +0 -8
  218. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/point_defect_type_enum.py +0 -8
  219. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/__init__.py +0 -7
  220. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/builder.py +0 -6
  221. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/configuration.py +0 -41
  222. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/helpers.py +0 -43
  223. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/substitution_placement_method_enum.py +0 -7
  224. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/types.py +0 -24
  225. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/__init__.py +0 -7
  226. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/builder.py +0 -19
  227. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/configuration.py +0 -27
  228. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/helpers.py +0 -42
  229. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/vacancy_placement_method_enum.py +0 -7
  230. package/src/py/mat3ra/made/tools/build/pristine_structures/__init__.py +0 -0
  231. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/__init__.py +0 -0
  232. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/builder.py +0 -80
  233. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/configurations.py +0 -22
  234. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/helpers.py +0 -40
  235. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/__init__.py +0 -0
  236. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/__init__.py +0 -29
  237. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/build_parameters.py +0 -5
  238. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/builders.py +0 -56
  239. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/configuration.py +0 -33
  240. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/helpers.py +0 -76
  241. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/__init__.py +0 -11
  242. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/build_parameters.py +0 -9
  243. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/builders.py +0 -83
  244. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/configuration.py +0 -35
  245. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/helpers.py +0 -62
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  522. package/tsconfig.json +0 -3
@@ -1,336 +0,0 @@
1
- ISLAND_SLAB_Si_001_CYLINDER_CONDITION_1_LAYER = {
2
- "name": "Si(001), termination Si_P4/mmm_2, Slab, Island",
3
- "basis": {
4
- "elements": [
5
- {"id": 0, "value": "Si"},
6
- {"id": 1, "value": "Si"},
7
- {"id": 2, "value": "Si"},
8
- {"id": 3, "value": "Si"},
9
- {"id": 4, "value": "Si"},
10
- {"id": 5, "value": "Si"},
11
- {"id": 6, "value": "Si"},
12
- {"id": 7, "value": "Si"},
13
- {"id": 8, "value": "Si"},
14
- {"id": 9, "value": "Si"},
15
- {"id": 10, "value": "Si"},
16
- {"id": 11, "value": "Si"},
17
- {"id": 12, "value": "Si"},
18
- {"id": 13, "value": "Si"},
19
- {"id": 14, "value": "Si"},
20
- {"id": 15, "value": "Si"},
21
- {"id": 16, "value": "Si"},
22
- {"id": 17, "value": "Si"},
23
- {"id": 18, "value": "Si"},
24
- {"id": 19, "value": "Si"},
25
- {"id": 20, "value": "Si"},
26
- {"id": 21, "value": "Si"},
27
- {"id": 22, "value": "Si"},
28
- {"id": 23, "value": "Si"},
29
- {"id": 24, "value": "Si"},
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- {"id": 25, "value": "Si"},
31
- {"id": 26, "value": "Si"},
32
- {"id": 27, "value": "Si"},
33
- {"id": 28, "value": "Si"},
34
- {"id": 29, "value": "Si"},
35
- {"id": 30, "value": "Si"},
36
- {"id": 31, "value": "Si"},
37
- {"id": 32, "value": "Si"},
38
- {"id": 33, "value": "Si"},
39
- {"id": 34, "value": "Si"},
40
- {"id": 35, "value": "Si"},
41
- {"id": 36, "value": "Si"},
42
- {"id": 37, "value": "Si"},
43
- {"id": 38, "value": "Si"},
44
- {"id": 39, "value": "Si"},
45
- {"id": 40, "value": "Si"},
46
- {"id": 41, "value": "Si"},
47
- {"id": 42, "value": "Si"},
48
- {"id": 43, "value": "Si"},
49
- {"id": 44, "value": "Si"},
50
- {"id": 45, "value": "Si"},
51
- {"id": 46, "value": "Si"},
52
- {"id": 47, "value": "Si"},
53
- {"id": 48, "value": "Si"},
54
- {"id": 49, "value": "Si"},
55
- {"id": 50, "value": "Si"},
56
- {"id": 51, "value": "Si"},
57
- {"id": 52, "value": "Si"},
58
- {"id": 53, "value": "Si"},
59
- {"id": 54, "value": "Si"},
60
- {"id": 55, "value": "Si"},
61
- {"id": 56, "value": "Si"},
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- {"id": 57, "value": "Si"},
63
- {"id": 58, "value": "Si"},
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- {"id": 59, "value": "Si"},
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- {"id": 60, "value": "Si"},
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- {"id": 61, "value": "Si"},
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- {"id": 62, "value": "Si"},
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- {"id": 63, "value": "Si"},
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- {"id": 64, "value": "Si"},
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- {"id": 65, "value": "Si"},
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- {"id": 66, "value": "Si"},
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- {"id": 67, "value": "Si"},
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- {"id": 68, "value": "Si"},
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- {"id": 69, "value": "Si"},
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- {"id": 70, "value": "Si"},
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- {"id": 71, "value": "Si"},
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- {"id": 72, "value": "Si"},
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- {"id": 73, "value": "Si"},
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- {"id": 74, "value": "Si"},
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- {"id": 75, "value": "Si"},
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- {"id": 76, "value": "Si"},
82
- {"id": 77, "value": "Si"},
83
- {"id": 78, "value": "Si"},
84
- {"id": 79, "value": "Si"},
85
- {"id": 80, "value": "Si"},
86
- {"id": 81, "value": "Si"},
87
- {"id": 82, "value": "Si"},
88
- {"id": 83, "value": "Si"},
89
- {"id": 84, "value": "Si"},
90
- {"id": 85, "value": "Si"},
91
- {"id": 86, "value": "Si"},
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- {"id": 87, "value": "Si"},
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- {"id": 88, "value": "Si"},
94
- {"id": 89, "value": "Si"},
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- {"id": 90, "value": "Si"},
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- {"id": 91, "value": "Si"},
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- {"id": 92, "value": "Si"},
98
- {"id": 93, "value": "Si"},
99
- {"id": 94, "value": "Si"},
100
- {"id": 95, "value": "Si"},
101
- {"id": 96, "value": "Si"},
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- {"id": 97, "value": "Si"},
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- {"id": 98, "value": "Si"},
104
- {"id": 99, "value": "Si"},
105
- {"id": 100, "value": "Si"},
106
- {"id": 101, "value": "Si"},
107
- {"id": 102, "value": "Si"},
108
- {"id": 103, "value": "Si"},
109
- {"id": 104, "value": "Si"},
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- {"id": 105, "value": "Si"},
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- {"id": 106, "value": "Si"},
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- {"id": 107, "value": "Si"},
113
- {"id": 108, "value": "Si"},
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- {"id": 109, "value": "Si"},
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- {"id": 110, "value": "Si"},
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- {"id": 111, "value": "Si"},
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- {"id": 112, "value": "Si"},
118
- {"id": 113, "value": "Si"},
119
- {"id": 114, "value": "Si"},
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- {"id": 115, "value": "Si"},
121
- {"id": 116, "value": "Si"},
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- {"id": 117, "value": "Si"},
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- {"id": 118, "value": "Si"},
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- {"id": 119, "value": "Si"},
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- {"id": 120, "value": "Si"},
126
- {"id": 121, "value": "Si"},
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- {"id": 122, "value": "Si"},
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- {"id": 123, "value": "Si"},
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- {"id": 124, "value": "Si"},
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- {"id": 125, "value": "Si"},
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- {"id": 126, "value": "Si"},
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- {"id": 127, "value": "Si"},
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- {"id": 128, "value": "Si"},
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- {"id": 129, "value": "Si"},
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- {"id": 130, "value": "Si"},
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- {"id": 131, "value": "Si"},
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- {"id": 132, "value": "Si"},
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- {"id": 133, "value": "Si"},
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- {"id": 134, "value": "Si"},
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- {"id": 135, "value": "Si"},
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- {"id": 136, "value": "Si"},
142
- {"id": 137, "value": "Si"},
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- {"id": 138, "value": "Si"},
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- {"id": 139, "value": "Si"},
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- {"id": 140, "value": "Si"},
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- {"id": 141, "value": "Si"},
147
- {"id": 142, "value": "Si"},
148
- {"id": 143, "value": "Si"},
149
- {"id": 144, "value": "Si"},
150
- {"id": 145, "value": "Si"},
151
- {"id": 146, "value": "Si"},
152
- {"id": 147, "value": "Si"},
153
- {"id": 148, "value": "Si"},
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- {"id": 149, "value": "Si"},
155
- {"id": 150, "value": "Si"},
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- {"id": 151, "value": "Si"},
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- {"id": 152, "value": "Si"},
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- {"id": 153, "value": "Si"},
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- {"id": 154, "value": "Si"},
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- {"id": 155, "value": "Si"},
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- {"id": 156, "value": "Si"},
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- ],
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- "coordinates": [
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- {"id": 130, "value": [0.833333333, 0.833333333, 0.051775612]},
295
- {"id": 131, "value": [0.75, 0.916666667, 4.14e-7]},
296
- {"id": 132, "value": [0.666666667, 0.666666667, 0.051775612]},
297
- {"id": 133, "value": [0.916666667, 0.75, 4.14e-7]},
298
- {"id": 134, "value": [0.666666667, 0.833333333, 0.155326007]},
299
- {"id": 135, "value": [0.916666667, 0.916666667, 0.103550809]},
300
- {"id": 136, "value": [0.833333333, 0.666666667, 0.362426797]},
301
- {"id": 137, "value": [0.75, 0.75, 0.3106516]},
302
- {"id": 138, "value": [0.833333333, 0.833333333, 0.258876402]},
303
- {"id": 139, "value": [0.75, 0.916666667, 0.207101204]},
304
- {"id": 140, "value": [0.666666667, 0.666666667, 0.258876402]},
305
- {"id": 141, "value": [0.916666667, 0.75, 0.207101204]},
306
- {"id": 142, "value": [0.666666667, 0.833333333, 0.362426797]},
307
- {"id": 143, "value": [0.916666667, 0.916666667, 0.3106516]},
308
- {"id": 144, "value": [0.5, 0.333333333, 0.56952738]},
309
- {"id": 145, "value": [0.416666667, 0.416666667, 0.517752183]},
310
- {"id": 146, "value": [0.5, 0.5, 0.465976986]},
311
- {"id": 147, "value": [0.416666667, 0.583333333, 0.414201788]},
312
- {"id": 148, "value": [0.333333333, 0.333333333, 0.465976986]},
313
- {"id": 149, "value": [0.583333333, 0.416666667, 0.414201788]},
314
- {"id": 150, "value": [0.333333333, 0.5, 0.56952738]},
315
- {"id": 151, "value": [0.583333333, 0.583333333, 0.517752183]},
316
- {"id": 152, "value": [0.5, 0.666666667, 0.56952738]},
317
- {"id": 153, "value": [0.333333333, 0.666666667, 0.465976986]},
318
- {"id": 154, "value": [0.666666667, 0.333333333, 0.465976986]},
319
- {"id": 155, "value": [0.666666667, 0.5, 0.56952738]},
320
- {"id": 156, "value": [0.666666667, 0.666666667, 0.465976986]},
321
- ],
322
- "units": "crystal",
323
- "labels": [],
324
- "constraints": [],
325
- },
326
- "lattice": {
327
- "a": 16.406291538,
328
- "b": 16.406291538,
329
- "c": 26.406291537999998,
330
- "alpha": 90,
331
- "beta": 90,
332
- "gamma": 90,
333
- "units": {"length": "angstrom", "angle": "degree"},
334
- "type": "TRI",
335
- },
336
- }
@@ -1,147 +0,0 @@
1
- MERGED_BULK_Si_Ge = {
2
- "metadata": {
3
- "build": [
4
- {
5
- "configuration": {
6
- "merge_components": [
7
- {
8
- "metadata": {"boundaryConditions": {"type": "pbc", "offset": 0}},
9
- "name": "Si8",
10
- "basis": {
11
- "elements": [
12
- {"id": 0, "value": "Si"},
13
- {"id": 1, "value": "Si"},
14
- {"id": 2, "value": "Si"},
15
- {"id": 3, "value": "Si"},
16
- {"id": 4, "value": "Si"},
17
- {"id": 5, "value": "Si"},
18
- {"id": 6, "value": "Si"},
19
- {"id": 7, "value": "Si"},
20
- ],
21
- "coordinates": [
22
- {"id": 0, "value": [0.5, 0, 0]},
23
- {"id": 1, "value": [0.25, 0.25, 0.75]},
24
- {"id": 2, "value": [0.5, 0.5, 0.5]},
25
- {"id": 3, "value": [0.25, 0.75, 0.25]},
26
- {"id": 4, "value": [0, 0, 0.5]},
27
- {"id": 5, "value": [0.75, 0.25, 0.25]},
28
- {"id": 6, "value": [0, 0.5, 0]},
29
- {"id": 7, "value": [0.75, 0.75, 0.75]},
30
- ],
31
- "units": "crystal",
32
- "labels": [],
33
- "constraints": [],
34
- },
35
- "lattice": {
36
- "a": 5.468763846,
37
- "b": 5.468763846,
38
- "c": 5.468763846,
39
- "alpha": 90,
40
- "beta": 90,
41
- "gamma": 90,
42
- "units": {"length": "angstrom", "angle": "degree"},
43
- "type": "TRI",
44
- },
45
- },
46
- {
47
- "name": "Germanium FCC",
48
- "basis": {
49
- "elements": [
50
- {"id": 0, "value": "Ge"},
51
- {"id": 1, "value": "Ge"},
52
- {"id": 2, "value": "Ge"},
53
- {"id": 3, "value": "Ge"},
54
- {"id": 4, "value": "Ge"},
55
- {"id": 5, "value": "Ge"},
56
- {"id": 6, "value": "Ge"},
57
- {"id": 7, "value": "Ge"},
58
- ],
59
- "coordinates": [
60
- {"id": 0, "value": [0, 0, 0]},
61
- {"id": 1, "value": [0.5, 0.5, 0]},
62
- {"id": 2, "value": [0.5, 0, 0.5]},
63
- {"id": 3, "value": [0, 0.5, 0.5]},
64
- {"id": 4, "value": [0.25, 0.25, 0.25]},
65
- {"id": 5, "value": [0.75, 0.75, 0.25]},
66
- {"id": 6, "value": [0.75, 0.25, 0.75]},
67
- {"id": 7, "value": [0.25, 0.75, 0.75]},
68
- ],
69
- "units": "crystal",
70
- "labels": [],
71
- "constraints": [],
72
- },
73
- "lattice": {
74
- "a": 5.67099638511611,
75
- "b": 5.67099638511611,
76
- "c": 5.67099638511611,
77
- "alpha": 90,
78
- "beta": 90,
79
- "gamma": 90,
80
- "units": {"length": "angstrom", "angle": "degree"},
81
- "type": "CUB",
82
- },
83
- },
84
- ],
85
- "merge_method": "REPLACE",
86
- },
87
- "build_parameters": {
88
- "material_name": "Si-Ge Merged",
89
- "distance_tolerance": 0.1,
90
- "merge_dangerously": True,
91
- },
92
- }
93
- ],
94
- },
95
- "name": "Si-Ge Merged",
96
- "basis": {
97
- "elements": [
98
- {"id": 0, "value": "Si"},
99
- {"id": 1, "value": "Si"},
100
- {"id": 2, "value": "Si"},
101
- {"id": 3, "value": "Si"},
102
- {"id": 4, "value": "Si"},
103
- {"id": 5, "value": "Si"},
104
- {"id": 6, "value": "Si"},
105
- {"id": 7, "value": "Si"},
106
- {"id": 8, "value": "Ge"},
107
- {"id": 9, "value": "Ge"},
108
- {"id": 10, "value": "Ge"},
109
- {"id": 11, "value": "Ge"},
110
- {"id": 12, "value": "Ge"},
111
- {"id": 13, "value": "Ge"},
112
- {"id": 14, "value": "Ge"},
113
- {"id": 15, "value": "Ge"},
114
- ],
115
- "coordinates": [
116
- {"id": 0, "value": [0.5, 0, 0]},
117
- {"id": 1, "value": [0.25, 0.25, 0.75]},
118
- {"id": 2, "value": [0.5, 0.5, 0.5]},
119
- {"id": 3, "value": [0.25, 0.75, 0.25]},
120
- {"id": 4, "value": [0, 0, 0.5]},
121
- {"id": 5, "value": [0.75, 0.25, 0.25]},
122
- {"id": 6, "value": [0, 0.5, 0]},
123
- {"id": 7, "value": [0.75, 0.75, 0.75]},
124
- {"id": 8, "value": [0, 0, 0]},
125
- {"id": 9, "value": [0.5, 0.5, 0]},
126
- {"id": 10, "value": [0.5, 0, 0.5]},
127
- {"id": 11, "value": [0, 0.5, 0.5]},
128
- {"id": 12, "value": [0.25, 0.25, 0.25]},
129
- {"id": 13, "value": [0.75, 0.75, 0.25]},
130
- {"id": 14, "value": [0.75, 0.25, 0.75]},
131
- {"id": 15, "value": [0.25, 0.75, 0.75]},
132
- ],
133
- "units": "crystal",
134
- "labels": [],
135
- "constraints": [],
136
- },
137
- "lattice": {
138
- "a": 5.468763846,
139
- "b": 5.468763846,
140
- "c": 5.468763846,
141
- "alpha": 90,
142
- "beta": 90,
143
- "gamma": 90,
144
- "units": {"length": "angstrom", "angle": "degree"},
145
- "type": "TRI",
146
- },
147
- }
@@ -1,46 +0,0 @@
1
- GRAPHENE = {
2
- "name": "Graphene",
3
- "basis": {
4
- "elements": [{"id": 0, "value": "C"}, {"id": 1, "value": "C"}],
5
- "coordinates": [{"id": 0, "value": [0, 0, 0]}, {"id": 1, "value": [0.333333, 0.666667, 0]}],
6
- "units": "crystal",
7
- "constraints": [],
8
- },
9
- "lattice": {
10
- "a": 2.467291,
11
- "b": 2.467291,
12
- "c": 20,
13
- "alpha": 90,
14
- "beta": 90,
15
- "gamma": 120,
16
- "units": {"length": "angstrom", "angle": "degree"},
17
- "type": "HEX",
18
- },
19
- "isNonPeriodic": False,
20
- }
21
-
22
- # TODO: Use material from Standata. Add materials equivalency comparator.
23
- # Right now generated Silicene monolayer and one from Standata differ in gamma angle (120 vs 60 degrees).
24
- SILICENE = {
25
- "name": "Silicon FCC - Monolayer ((1, 1, 1))",
26
- "lattice": {
27
- "a": 3.8670001,
28
- "b": 3.8670001,
29
- "c": 11.3223581,
30
- "alpha": 90,
31
- "beta": 90,
32
- "gamma": 60,
33
- "units": {"length": "angstrom", "angle": "degree"},
34
- "type": "TRI",
35
- },
36
- "basis": {
37
- "elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Si"}],
38
- "coordinates": [
39
- {"id": 0, "value": [0.916666311, 0.916666303, 0.069716872]},
40
- {"id": 1, "value": [0.249999661, 0.249999659, 0.0]},
41
- ],
42
- "units": "crystal",
43
- "labels": [],
44
- "constraints": [],
45
- },
46
- }
@@ -1,116 +0,0 @@
1
- SI_NANOPARTICLE_SPHERE = {
2
- "name": "Si Sphere Nanoparticle",
3
- "basis": {
4
- "elements": [
5
- {"id": 0, "value": "Si"},
6
- {"id": 1, "value": "Si"},
7
- {"id": 2, "value": "Si"},
8
- {"id": 3, "value": "Si"},
9
- {"id": 4, "value": "Si"},
10
- {"id": 5, "value": "Si"},
11
- {"id": 6, "value": "Si"},
12
- {"id": 7, "value": "Si"},
13
- {"id": 8, "value": "Si"},
14
- {"id": 9, "value": "Si"},
15
- {"id": 10, "value": "Si"},
16
- {"id": 11, "value": "Si"},
17
- {"id": 12, "value": "Si"},
18
- {"id": 13, "value": "Si"},
19
- {"id": 14, "value": "Si"},
20
- {"id": 15, "value": "Si"},
21
- {"id": 16, "value": "Si"},
22
- {"id": 17, "value": "Si"},
23
- {"id": 18, "value": "Si"},
24
- {"id": 19, "value": "Si"},
25
- {"id": 20, "value": "Si"},
26
- {"id": 21, "value": "Si"},
27
- {"id": 22, "value": "Si"},
28
- {"id": 23, "value": "Si"},
29
- {"id": 24, "value": "Si"},
30
- {"id": 25, "value": "Si"},
31
- {"id": 26, "value": "Si"},
32
- {"id": 27, "value": "Si"},
33
- {"id": 28, "value": "Si"},
34
- {"id": 29, "value": "Si"},
35
- {"id": 30, "value": "Si"},
36
- {"id": 31, "value": "Si"},
37
- {"id": 32, "value": "Si"},
38
- {"id": 33, "value": "Si"},
39
- {"id": 34, "value": "Si"},
40
- {"id": 35, "value": "Si"},
41
- {"id": 36, "value": "Si"},
42
- {"id": 37, "value": "Si"},
43
- {"id": 38, "value": "Si"},
44
- {"id": 39, "value": "Si"},
45
- {"id": 40, "value": "Si"},
46
- {"id": 41, "value": "Si"},
47
- {"id": 42, "value": "Si"},
48
- {"id": 43, "value": "Si"},
49
- {"id": 44, "value": "Si"},
50
- {"id": 45, "value": "Si"},
51
- {"id": 46, "value": "Si"},
52
- ],
53
- "coordinates": [
54
- {"id": 0, "value": [0.4375, 0.4375, 0.375001]},
55
- {"id": 1, "value": [0.3125, 0.3125, 0.625001]},
56
- {"id": 2, "value": [0.375, 0.375, 0.562501]},
57
- {"id": 3, "value": [0.3125, 0.4375, 0.500001]},
58
- {"id": 4, "value": [0.4375, 0.3125, 0.500001]},
59
- {"id": 5, "value": [0.4375, 0.4375, 0.625001]},
60
- {"id": 6, "value": [0.3125, 0.4375, 0.750001]},
61
- {"id": 7, "value": [0.4375, 0.3125, 0.750001]},
62
- {"id": 8, "value": [0.375, 0.5, 0.437501]},
63
- {"id": 9, "value": [0.3125, 0.5625, 0.375001]},
64
- {"id": 10, "value": [0.4375, 0.6875, 0.375001]},
65
- {"id": 11, "value": [0.375, 0.5, 0.687501]},
66
- {"id": 12, "value": [0.3125, 0.5625, 0.625001]},
67
- {"id": 13, "value": [0.375, 0.625, 0.562501]},
68
- {"id": 14, "value": [0.3125, 0.6875, 0.500001]},
69
- {"id": 15, "value": [0.25, 0.5, 0.562501]},
70
- {"id": 16, "value": [0.4375, 0.5625, 0.500001]},
71
- {"id": 17, "value": [0.4375, 0.6875, 0.625001]},
72
- {"id": 18, "value": [0.4375, 0.5625, 0.750001]},
73
- {"id": 19, "value": [0.5625, 0.3125, 0.375001]},
74
- {"id": 20, "value": [0.5, 0.375, 0.437501]},
75
- {"id": 21, "value": [0.6875, 0.4375, 0.375001]},
76
- {"id": 22, "value": [0.5625, 0.3125, 0.625001]},
77
- {"id": 23, "value": [0.625, 0.375, 0.562501]},
78
- {"id": 24, "value": [0.5625, 0.4375, 0.500001]},
79
- {"id": 25, "value": [0.5, 0.25, 0.562501]},
80
- {"id": 26, "value": [0.6875, 0.3125, 0.500001]},
81
- {"id": 27, "value": [0.5, 0.375, 0.687501]},
82
- {"id": 28, "value": [0.6875, 0.4375, 0.625001]},
83
- {"id": 29, "value": [0.5625, 0.4375, 0.750001]},
84
- {"id": 30, "value": [0.625, 0.5, 0.437501]},
85
- {"id": 31, "value": [0.5625, 0.5625, 0.375001]},
86
- {"id": 32, "value": [0.5, 0.5, 0.312501]},
87
- {"id": 33, "value": [0.5, 0.625, 0.437501]},
88
- {"id": 34, "value": [0.625, 0.5, 0.687501]},
89
- {"id": 35, "value": [0.5625, 0.5625, 0.625001]},
90
- {"id": 36, "value": [0.625, 0.625, 0.562501]},
91
- {"id": 37, "value": [0.5625, 0.6875, 0.500001]},
92
- {"id": 38, "value": [0.5, 0.5, 0.562501]},
93
- {"id": 39, "value": [0.6875, 0.5625, 0.500001]},
94
- {"id": 40, "value": [0.5, 0.625, 0.687501]},
95
- {"id": 41, "value": [0.6875, 0.6875, 0.625001]},
96
- {"id": 42, "value": [0.5625, 0.6875, 0.750001]},
97
- {"id": 43, "value": [0.5, 0.5, 0.812501]},
98
- {"id": 44, "value": [0.6875, 0.5625, 0.750001]},
99
- {"id": 45, "value": [0.5, 0.75, 0.562501]},
100
- {"id": 46, "value": [0.75, 0.5, 0.562501]},
101
- ],
102
- "units": "crystal",
103
- "labels": [],
104
- "constraints": [],
105
- },
106
- "lattice": {
107
- "a": 21.875055384,
108
- "b": 21.875055384,
109
- "c": 21.875055384,
110
- "alpha": 90.0,
111
- "beta": 90.0,
112
- "gamma": 90.0,
113
- "units": {"length": "angstrom", "angle": "degree"},
114
- "type": "TRI",
115
- },
116
- }
File without changes