@mat3ra/made 2026.8.13-0 → 2026.8.26-0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +9 -5
- package/.babelrc +0 -10
- package/.eslintrc.json +0 -11
- package/.gitattributes +0 -1
- package/.husky/post-checkout +0 -3
- package/.husky/post-commit +0 -3
- package/.husky/post-merge +0 -3
- package/.husky/pre-commit +0 -6
- package/.husky/pre-push +0 -3
- package/.mocharc.json +0 -5
- package/.pre-commit-config.yaml +0 -26
- package/.prettierignore +0 -2
- package/.prettierrc +0 -6
- package/AGENTS.md +0 -133
- package/MANIFEST.in +0 -1
- package/data/constants.json +0 -13
- package/data/reciprocal_paths.json +0 -111
- package/images/made/tools/tools_diagram_general.png +0 -3
- package/images/made/tools/tools_diagram_interface.png +0 -3
- package/pyproject.toml +0 -123
- package/scripts/generate-mixins.ts +0 -28
- package/src/__init__.py +0 -0
- package/src/js/Material.ts +0 -618
- package/src/js/basis/basis.ts +0 -634
- package/src/js/basis/constrained_basis.ts +0 -115
- package/src/js/basis/coordinates.ts +0 -92
- package/src/js/basis/elements.ts +0 -24
- package/src/js/basis/helpers.ts +0 -20
- package/src/js/basis/labels.ts +0 -6
- package/src/js/cell/cell.ts +0 -149
- package/src/js/cell/conventional_cell.ts +0 -86
- package/src/js/cell/primitive_cell.ts +0 -166
- package/src/js/constants/molecule.ts +0 -18
- package/src/js/constants.ts +0 -4
- package/src/js/constraints/constraints.ts +0 -45
- package/src/js/generated/MaterialSchemaMixin.ts +0 -79
- package/src/js/lattice/lattice.ts +0 -308
- package/src/js/lattice/lattice_types.ts +0 -134
- package/src/js/lattice/reciprocal/lattice_reciprocal.ts +0 -206
- package/src/js/lattice/reciprocal/paths.ts +0 -39
- package/src/js/lattice/reciprocal/symmetry_points.ts +0 -886
- package/src/js/lattice/unit_cell.ts +0 -66
- package/src/js/made.ts +0 -62
- package/src/js/parsers/cif.ts +0 -25
- package/src/js/parsers/errors.ts +0 -6
- package/src/js/parsers/espresso.ts +0 -29
- package/src/js/parsers/native_format_parsers.ts +0 -52
- package/src/js/parsers/parsers.ts +0 -13
- package/src/js/parsers/poscar.ts +0 -218
- package/src/js/parsers/xyz.ts +0 -190
- package/src/js/parsers/xyz_combinatorial_basis.ts +0 -268
- package/src/js/tools/basis.ts +0 -131
- package/src/js/tools/cell.ts +0 -40
- package/src/js/tools/index.ts +0 -11
- package/src/js/tools/material.ts +0 -64
- package/src/js/tools/supercell.ts +0 -89
- package/src/js/tools/surface.ts +0 -213
- package/src/py/__init__.py +0 -0
- package/src/py/mat3ra/__init__.py +0 -1
- package/src/py/mat3ra/made/__init__.py +0 -7
- package/src/py/mat3ra/made/basis/__init__.py +0 -255
- package/src/py/mat3ra/made/basis/coordinates.py +0 -43
- package/src/py/mat3ra/made/cell/__init__.py +0 -55
- package/src/py/mat3ra/made/cell/primitive_cell.py +0 -156
- package/src/py/mat3ra/made/data_helper.py +0 -5
- package/src/py/mat3ra/made/lattice.py +0 -195
- package/src/py/mat3ra/made/material.py +0 -135
- package/src/py/mat3ra/made/metadata.py +0 -45
- package/src/py/mat3ra/made/reciprocal/__init__.py +0 -5
- package/src/py/mat3ra/made/reciprocal/lattice_reciprocal.py +0 -147
- package/src/py/mat3ra/made/reciprocal/paths.py +0 -30
- package/src/py/mat3ra/made/reciprocal/symmetry_points.py +0 -385
- package/src/py/mat3ra/made/tools/README.md +0 -173
- package/src/py/mat3ra/made/tools/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/analyze/__init__.py +0 -31
- package/src/py/mat3ra/made/tools/analyze/basis/__init__.py +0 -3
- package/src/py/mat3ra/made/tools/analyze/basis/analyzer.py +0 -50
- package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer.py +0 -32
- package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer_factory.py +0 -31
- package/src/py/mat3ra/made/tools/analyze/coordination.py +0 -56
- package/src/py/mat3ra/made/tools/analyze/crystal_site/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_crystal_site_material_analyzer.py +0 -35
- package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_material_analyzer.py +0 -49
- package/src/py/mat3ra/made/tools/analyze/crystal_site/crystal_site_analyzer.py +0 -65
- package/src/py/mat3ra/made/tools/analyze/crystal_site/voronoi_crystal_site_analyzer.py +0 -47
- package/src/py/mat3ra/made/tools/analyze/enums.py +0 -33
- package/src/py/mat3ra/made/tools/analyze/fingerprint/__init__.py +0 -4
- package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/layered_fingerprint_along_axis.py +0 -83
- package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/unique_element_string_per_layer.py +0 -9
- package/src/py/mat3ra/made/tools/analyze/interface/__init__.py +0 -20
- package/src/py/mat3ra/made/tools/analyze/interface/commensurate.py +0 -156
- package/src/py/mat3ra/made/tools/analyze/interface/enums.py +0 -60
- package/src/py/mat3ra/made/tools/analyze/interface/grain_boundary.py +0 -80
- package/src/py/mat3ra/made/tools/analyze/interface/simple.py +0 -251
- package/src/py/mat3ra/made/tools/analyze/interface/twisted_nanoribbons.py +0 -91
- package/src/py/mat3ra/made/tools/analyze/interface/utils/__init__.py +0 -77
- package/src/py/mat3ra/made/tools/analyze/interface/utils/holders.py +0 -14
- package/src/py/mat3ra/made/tools/analyze/interface/utils/vector.py +0 -56
- package/src/py/mat3ra/made/tools/analyze/interface/zsl.py +0 -259
- package/src/py/mat3ra/made/tools/analyze/interface_material.py +0 -45
- package/src/py/mat3ra/made/tools/analyze/lattice/__init__.py +0 -2
- package/src/py/mat3ra/made/tools/analyze/lattice/analyzer.py +0 -126
- package/src/py/mat3ra/made/tools/analyze/lattice/helpers.py +0 -31
- package/src/py/mat3ra/made/tools/analyze/lattice_lines.py +0 -30
- package/src/py/mat3ra/made/tools/analyze/lattice_planes.py +0 -192
- package/src/py/mat3ra/made/tools/analyze/lattice_swap_analyzer.py +0 -105
- package/src/py/mat3ra/made/tools/analyze/material.py +0 -276
- package/src/py/mat3ra/made/tools/analyze/other.py +0 -434
- package/src/py/mat3ra/made/tools/analyze/rdf.py +0 -74
- package/src/py/mat3ra/made/tools/analyze/slab.py +0 -76
- package/src/py/mat3ra/made/tools/analyze/solid_solution_analyzer.py +0 -171
- package/src/py/mat3ra/made/tools/analyze/terrace.py +0 -105
- package/src/py/mat3ra/made/tools/analyze/utils.py +0 -162
- package/src/py/mat3ra/made/tools/bond_directions/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/bond_directions/bond_directions.py +0 -150
- package/src/py/mat3ra/made/tools/bond_directions/bond_directions_for_element_list.py +0 -7
- package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_enum.py +0 -8
- package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_for_element.py +0 -16
- package/src/py/mat3ra/made/tools/build/__init__.py +0 -25
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/__init__.py +0 -7
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/helpers.py +0 -59
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/types.py +0 -26
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/utils.py +0 -139
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/__init__.py +0 -47
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/__init__.py +0 -11
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/build_parameters.py +0 -5
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/builder.py +0 -164
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/configuration.py +0 -48
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/helpers.py +0 -134
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/__init__.py +0 -6
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/helpers.py +0 -157
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/enums.py +0 -7
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/__init__.py +0 -7
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/configuration.py +0 -13
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/helpers.py +0 -70
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/utils.py +0 -87
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/__init__.py +0 -6
- package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/helpers.py +0 -129
- package/src/py/mat3ra/made/tools/build/defective_structures/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/build_parameters.py +0 -12
- package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/builder.py +0 -17
- package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/configuration.py +0 -40
- package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/helpers.py +0 -82
- package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/__init__.py +0 -1
- package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/__init__.py +0 -9
- package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/builder.py +0 -37
- package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/configuration.py +0 -30
- package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/enums.py +0 -8
- package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/helpers.py +0 -76
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/builder.py +0 -11
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/configuration.py +0 -18
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/helpers.py +0 -137
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/types.py +0 -22
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/builder.py +0 -28
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/configuration.py +0 -55
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/helpers.py +0 -75
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/builder.py +0 -15
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/configuration.py +0 -16
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/helpers.py +0 -116
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/build_parameters.py +0 -10
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/builder.py +0 -30
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/configuration.py +0 -11
- package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/helpers.py +0 -78
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/builder.py +0 -31
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/configuration.py +0 -45
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/helpers.py +0 -80
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/__init__.py +0 -40
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/atom_placement_method_enum.py +0 -14
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/__init__.py +0 -7
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/builder.py +0 -42
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/configuration.py +0 -27
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/complex_defect_type_enum.py +0 -5
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/factories.py +0 -69
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/helpers.py +0 -92
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/__init__.py +0 -7
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/builder.py +0 -8
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/configuration.py +0 -29
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/helpers.py +0 -48
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/interstitial_placement_method_enum.py +0 -8
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/point_defect_type_enum.py +0 -8
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/__init__.py +0 -7
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/builder.py +0 -6
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/configuration.py +0 -41
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/helpers.py +0 -43
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/substitution_placement_method_enum.py +0 -7
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/types.py +0 -24
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/__init__.py +0 -7
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/builder.py +0 -19
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/configuration.py +0 -27
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/helpers.py +0 -42
- package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/vacancy_placement_method_enum.py +0 -7
- package/src/py/mat3ra/made/tools/build/pristine_structures/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/builder.py +0 -80
- package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/configurations.py +0 -22
- package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/helpers.py +0 -40
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/__init__.py +0 -29
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/build_parameters.py +0 -5
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/builders.py +0 -56
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/configuration.py +0 -33
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/helpers.py +0 -76
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/__init__.py +0 -11
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/build_parameters.py +0 -9
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/builders.py +0 -83
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/configuration.py +0 -35
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/helpers.py +0 -62
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/__init__.py +0 -9
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/build_parameters.py +0 -8
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/builder.py +0 -42
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/configuration.py +0 -99
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- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/termination_utils.py +0 -14
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/utils.py +0 -61
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab_strained_supercell/builder.py +0 -22
- package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab_strained_supercell/configuration.py +0 -17
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/__init__.py +0 -19
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/analyzer.py +0 -86
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/ase_based/__init__.py +0 -7
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/ase_based/builder.py +0 -54
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/ase_based/configuration.py +0 -19
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/enums.py +0 -42
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/helpers.py +0 -127
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/merge_based/__init__.py +0 -7
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/merge_based/builder.py +0 -33
- package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/merge_based/configuration.py +0 -16
- package/src/py/mat3ra/made/tools/build/processed_structures/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/processed_structures/two_dimensional/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/processed_structures/two_dimensional/passivation/__init__.py +0 -0
- package/src/py/mat3ra/made/tools/build/processed_structures/two_dimensional/passivation/analyzers/__init__.py +0 -9
- package/src/py/mat3ra/made/tools/build/processed_structures/two_dimensional/passivation/analyzers/coordination_based_passivation_material_analyzer.py +0 -112
- package/src/py/mat3ra/made/tools/build/processed_structures/two_dimensional/passivation/analyzers/passivation_material_analyzer.py +0 -16
- package/src/py/mat3ra/made/tools/build/processed_structures/two_dimensional/passivation/analyzers/surface_passivation_material_analyzer.py +0 -32
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{"id": 13, "value": [0.7903835, 0.423195346, 1e-06]},
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PAIR_DEFECT_VACANCY_INTERSTITIAL_BULK_PRIMITIVE_Si = {
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"elements": [{"id": 0, "value": "Si"}, {"id": 2, "value": "Ge"}],
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"coordinates": [{"id": 0, "value": [0.25, 0.25, 0.25]}, {"id": 2, "value": [0.5, 0.5, 0.5]}],
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PAIR_DEFECT_SUBSTITUTION_VACANCY_BULK_PRIMITIVE_Si = {
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GRAPHENE_ZIGZAG_NANORIBBON_PASSIVATED = {
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{"id": 0, "value": [0.062499937, 0.366666681, 0.5]},
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{"id": 1, "value": [0.312499937, 0.366666681, 0.5]},
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{"id": 2, "value": [0.187500062, 0.433333286, 0.5]},
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{"id": 3, "value": [0.187499937, 0.566666695, 0.5]},
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{"id": 4, "value": [0.062500062, 0.6333333, 0.5]},
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{"id": 5, "value": [0.562499937, 0.366666681, 0.5]},
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{"id": 6, "value": [0.437500062, 0.433333286, 0.5]},
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{"id": 7, "value": [0.437499937, 0.566666695, 0.5]},
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{"id": 8, "value": [0.312500062, 0.6333333, 0.5]},
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{"id": 9, "value": [0.812499938, 0.366666681, 0.5]},
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{"id": 10, "value": [0.687500062, 0.433333286, 0.5]},
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{"id": 11, "value": [0.687499937, 0.566666695, 0.5]},
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{"id": 12, "value": [0.562500062, 0.6333333, 0.5]},
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{"id": 13, "value": [0.937500063, 0.433333286, 0.5]},
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{"id": 14, "value": [0.937499937, 0.566666695, 0.5]},
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{"id": 15, "value": [0.812500063, 0.6333333, 0.5]},
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{"id": 16, "value": [0.062500067, 0.228137674, 0.5]},
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{"id": 17, "value": [0.312500067, 0.228137674, 0.5]},
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{"id": 18, "value": [0.062499932, 0.771862307, 0.5]},
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{"id": 19, "value": [0.562500067, 0.228137674, 0.5]},
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{"id": 20, "value": [0.312499932, 0.771862307, 0.5]},
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{"id": 21, "value": [0.812500068, 0.228137674, 0.5]},
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{"id": 22, "value": [0.562499932, 0.771862307, 0.5]},
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"lattice": {
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"a": 9.869164,
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"type": "TRI",
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},
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@@ -1,58 +0,0 @@
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PASSIVATED_SI_CONVENTIONAL_SLAB_001 = {
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"name": "Si(001), termination Si_P4/mmm_2, Slab, H-passivated",
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"basis": {
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"elements": [
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{"id": 0, "value": "Si"},
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{"id": 5, "value": "Si"},
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{"id": 6, "value": "Si"},
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{"id": 7, "value": "Si"},
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{"id": 8, "value": "Si"},
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{"id": 9, "value": "Si"},
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{"id": 10, "value": "Si"},
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{"id": 11, "value": "Si"},
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{"id": 12, "value": "Si"},
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{"id": 13, "value": "Si"},
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{"id": 14, "value": "Si"},
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{"id": 15, "value": "Si"},
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{"id": 16, "value": "H"},
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{"id": 17, "value": "H"},
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],
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"coordinates": [
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{"id": 0, "value": [0.5, 0, 0.257353832]},
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{"id": 1, "value": [0.25, 0.25, 0.17156945]},
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{"id": 2, "value": [0.5, 0.5, 0.085785068]},
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{"id": 3, "value": [0.25, 0.75, 6.86e-7]},
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{"id": 4, "value": [0, 0, 0.085785068]},
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{"id": 5, "value": [0.75, 0.25, 6.86e-7]},
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{"id": 6, "value": [0, 0.5, 0.257353832]},
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{"id": 7, "value": [0.75, 0.75, 0.17156945]},
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{"id": 8, "value": [0.5, 0, 0.600491359]},
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{"id": 9, "value": [0.25, 0.25, 0.514706977]},
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{"id": 10, "value": [0.5, 0.5, 0.428922596]},
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{"id": 11, "value": [0.25, 0.75, 0.343138214]},
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{"id": 12, "value": [0, 0, 0.428922596]},
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{"id": 13, "value": [0.75, 0.25, 0.343138214]},
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{"id": 14, "value": [0, 0.5, 0.600491359]},
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{"id": 15, "value": [0.75, 0.75, 0.514706977]},
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{"id": 16, "value": [0.5, 0, 0.693353943]},
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{"id": 17, "value": [0, 0.5, 0.693353943]},
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],
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},
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"lattice": {
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"a": 5.468763846,
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"b": 5.468763846,
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"c": 15.937527692,
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"alpha": 90,
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"beta": 90,
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},
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|
@@ -1,158 +0,0 @@
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|
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from unit.utils import OSPlatform
|
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|
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|
|
3
|
-
VACANCY_DEFECT_BULK_PRIMITIVE_Si = {
|
|
4
|
-
"name": "Silicon FCC with vacancy defect",
|
|
5
|
-
"lattice": {
|
|
6
|
-
"a": 3.867,
|
|
7
|
-
"b": 3.867,
|
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8
|
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"c": 3.867,
|
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9
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"alpha": 60.0,
|
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"beta": 60.0,
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"gamma": 60.0,
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"units": {"length": "angstrom", "angle": "degree"},
|
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"type": "FCC",
|
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|
-
},
|
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|
-
"basis": {
|
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|
-
"elements": [{"id": 0, "value": "Si"}],
|
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|
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"coordinates": [{"id": 0, "value": [0.25, 0.25, 0.25]}],
|
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|
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"units": "crystal",
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"labels": [],
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"constraints": [],
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},
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|
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}
|
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|
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|
|
24
|
-
SUBSTITUTION_DEFECT_BULK_PRIMITIVE_Si = {
|
|
25
|
-
"name": "Silicon FCC with substitutional defect",
|
|
26
|
-
"lattice": {
|
|
27
|
-
"a": 3.867,
|
|
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|
-
"b": 3.867,
|
|
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|
-
"c": 3.867,
|
|
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|
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"alpha": 60.0,
|
|
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|
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"beta": 60.0,
|
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|
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"gamma": 60.0,
|
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|
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"units": {"length": "angstrom", "angle": "degree"},
|
|
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|
-
"type": "FCC",
|
|
35
|
-
},
|
|
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|
-
"basis": {
|
|
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|
-
"elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Ge"}],
|
|
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|
-
"coordinates": [{"id": 0, "value": [0.25, 0.25, 0.25]}, {"id": 1, "value": [0.0, 0.0, 0.0]}],
|
|
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|
-
"units": "crystal",
|
|
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|
-
"labels": [],
|
|
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|
-
"constraints": [],
|
|
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|
-
},
|
|
43
|
-
}
|
|
44
|
-
|
|
45
|
-
INTERSTITIAL_DEFECT_BULK_PRIMITIVE_Si = {
|
|
46
|
-
"name": "Silicon FCC with interstitial defect",
|
|
47
|
-
"lattice": {
|
|
48
|
-
"a": 3.867,
|
|
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|
-
"b": 3.867,
|
|
50
|
-
"c": 3.867,
|
|
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|
-
"alpha": 60.0,
|
|
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|
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"beta": 60.0,
|
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|
-
"gamma": 60.0,
|
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|
-
"units": {"length": "angstrom", "angle": "degree"},
|
|
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|
-
"type": "FCC",
|
|
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|
-
},
|
|
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|
-
"basis": {
|
|
58
|
-
"elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Si"}, {"id": 2, "value": "C"}],
|
|
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|
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"coordinates": [
|
|
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|
-
{"id": 0, "value": [0.0, 0.0, 0.0]},
|
|
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|
-
{"id": 1, "value": [0.25, 0.25, 0.25]},
|
|
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|
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{"id": 2, "value": [0.5, 0.5, 0.5]},
|
|
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|
-
],
|
|
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|
-
"units": "crystal",
|
|
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|
-
"labels": [],
|
|
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|
-
"constraints": [],
|
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|
-
},
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|
-
}
|
|
69
|
-
|
|
70
|
-
INTERSTITIAL_VORONOI_DEFECT_BULK_PRIMITIVE_Si = {
|
|
71
|
-
OSPlatform.DARWIN: {
|
|
72
|
-
"name": "Silicon FCC with interstitial defect",
|
|
73
|
-
"basis": {
|
|
74
|
-
"elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Si"}, {"id": 2, "value": "Ge"}],
|
|
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|
-
"coordinates": [
|
|
76
|
-
{"id": 0, "value": [0.0, 0.0, 0.0]},
|
|
77
|
-
{"id": 1, "value": [0.25, 0.25, 0.25]},
|
|
78
|
-
{"id": 2, "value": [0.625, 0.625, 0.125]},
|
|
79
|
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],
|
|
80
|
-
"units": "crystal",
|
|
81
|
-
"labels": [],
|
|
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|
-
"constraints": [],
|
|
83
|
-
},
|
|
84
|
-
"lattice": {
|
|
85
|
-
"a": 3.867,
|
|
86
|
-
"b": 3.867,
|
|
87
|
-
"c": 3.867,
|
|
88
|
-
"alpha": 60.0,
|
|
89
|
-
"beta": 60.0,
|
|
90
|
-
"gamma": 60.0,
|
|
91
|
-
"units": {"length": "angstrom", "angle": "degree"},
|
|
92
|
-
"type": "FCC",
|
|
93
|
-
},
|
|
94
|
-
},
|
|
95
|
-
OSPlatform.OTHER: {
|
|
96
|
-
"name": "Silicon FCC with interstitial defect",
|
|
97
|
-
"basis": {
|
|
98
|
-
"elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Si"}, {"id": 2, "value": "Ge"}],
|
|
99
|
-
"coordinates": [
|
|
100
|
-
{"id": 0, "value": [0.0, 0.0, 0.0]},
|
|
101
|
-
{"id": 1, "value": [0.25, 0.25, 0.25]},
|
|
102
|
-
{"id": 2, "value": [0.5, 0.5, 0.5]},
|
|
103
|
-
],
|
|
104
|
-
"units": "crystal",
|
|
105
|
-
"labels": [],
|
|
106
|
-
"constraints": [],
|
|
107
|
-
},
|
|
108
|
-
"lattice": {
|
|
109
|
-
"a": 3.867,
|
|
110
|
-
"b": 3.867,
|
|
111
|
-
"c": 3.867,
|
|
112
|
-
"alpha": 60.0,
|
|
113
|
-
"beta": 60.0,
|
|
114
|
-
"gamma": 60.0,
|
|
115
|
-
"units": {"length": "angstrom", "angle": "degree"},
|
|
116
|
-
"type": "FCC",
|
|
117
|
-
},
|
|
118
|
-
},
|
|
119
|
-
}
|
|
120
|
-
|
|
121
|
-
MULTIPLE_POINT_DEFECTS_BULK_Si_CONVENTIONAL = {
|
|
122
|
-
"name": "Si8 with vacancy defect with interstitial defect with substitutional defect",
|
|
123
|
-
"basis": {
|
|
124
|
-
"elements": [
|
|
125
|
-
{"id": 0, "value": "Si"},
|
|
126
|
-
{"id": 1, "value": "Si"},
|
|
127
|
-
{"id": 2, "value": "Si"},
|
|
128
|
-
{"id": 3, "value": "Si"},
|
|
129
|
-
{"id": 4, "value": "Si"},
|
|
130
|
-
{"id": 5, "value": "Si"},
|
|
131
|
-
{"id": 6, "value": "N"},
|
|
132
|
-
{"id": 7, "value": "Ge"},
|
|
133
|
-
],
|
|
134
|
-
"coordinates": [
|
|
135
|
-
{"id": 0, "value": [0.5, 0.0, 0.0]},
|
|
136
|
-
{"id": 1, "value": [0.25, 0.25, 0.75]},
|
|
137
|
-
{"id": 2, "value": [0.25, 0.75, 0.25]},
|
|
138
|
-
{"id": 3, "value": [0.0, 0.0, 0.5]},
|
|
139
|
-
{"id": 4, "value": [0.75, 0.25, 0.25]},
|
|
140
|
-
{"id": 5, "value": [0.0, 0.5, 0.0]},
|
|
141
|
-
{"id": 6, "value": [0.25, 0.25, 0.25]},
|
|
142
|
-
{"id": 7, "value": [0.5, 0.5, 0.5]},
|
|
143
|
-
],
|
|
144
|
-
"units": "crystal",
|
|
145
|
-
"labels": [],
|
|
146
|
-
"constraints": [],
|
|
147
|
-
},
|
|
148
|
-
"lattice": {
|
|
149
|
-
"a": 5.468763846,
|
|
150
|
-
"b": 5.468763846,
|
|
151
|
-
"c": 5.468763846,
|
|
152
|
-
"alpha": 90.0,
|
|
153
|
-
"beta": 90.0,
|
|
154
|
-
"gamma": 90.0,
|
|
155
|
-
"units": {"length": "angstrom", "angle": "degree"},
|
|
156
|
-
"type": "TRI",
|
|
157
|
-
},
|
|
158
|
-
}
|