@mat3ra/made 2026.8.13-0 → 2026.8.26-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (493) hide show
  1. package/package.json +9 -5
  2. package/.babelrc +0 -10
  3. package/.eslintrc.json +0 -11
  4. package/.gitattributes +0 -1
  5. package/.husky/post-checkout +0 -3
  6. package/.husky/post-commit +0 -3
  7. package/.husky/post-merge +0 -3
  8. package/.husky/pre-commit +0 -6
  9. package/.husky/pre-push +0 -3
  10. package/.mocharc.json +0 -5
  11. package/.pre-commit-config.yaml +0 -26
  12. package/.prettierignore +0 -2
  13. package/.prettierrc +0 -6
  14. package/AGENTS.md +0 -133
  15. package/MANIFEST.in +0 -1
  16. package/data/constants.json +0 -13
  17. package/data/reciprocal_paths.json +0 -111
  18. package/images/made/tools/tools_diagram_general.png +0 -3
  19. package/images/made/tools/tools_diagram_interface.png +0 -3
  20. package/pyproject.toml +0 -123
  21. package/scripts/generate-mixins.ts +0 -28
  22. package/src/__init__.py +0 -0
  23. package/src/js/Material.ts +0 -618
  24. package/src/js/basis/basis.ts +0 -634
  25. package/src/js/basis/constrained_basis.ts +0 -115
  26. package/src/js/basis/coordinates.ts +0 -92
  27. package/src/js/basis/elements.ts +0 -24
  28. package/src/js/basis/helpers.ts +0 -20
  29. package/src/js/basis/labels.ts +0 -6
  30. package/src/js/cell/cell.ts +0 -149
  31. package/src/js/cell/conventional_cell.ts +0 -86
  32. package/src/js/cell/primitive_cell.ts +0 -166
  33. package/src/js/constants/molecule.ts +0 -18
  34. package/src/js/constants.ts +0 -4
  35. package/src/js/constraints/constraints.ts +0 -45
  36. package/src/js/generated/MaterialSchemaMixin.ts +0 -79
  37. package/src/js/lattice/lattice.ts +0 -308
  38. package/src/js/lattice/lattice_types.ts +0 -134
  39. package/src/js/lattice/reciprocal/lattice_reciprocal.ts +0 -206
  40. package/src/js/lattice/reciprocal/paths.ts +0 -39
  41. package/src/js/lattice/reciprocal/symmetry_points.ts +0 -886
  42. package/src/js/lattice/unit_cell.ts +0 -66
  43. package/src/js/made.ts +0 -62
  44. package/src/js/parsers/cif.ts +0 -25
  45. package/src/js/parsers/errors.ts +0 -6
  46. package/src/js/parsers/espresso.ts +0 -29
  47. package/src/js/parsers/native_format_parsers.ts +0 -52
  48. package/src/js/parsers/parsers.ts +0 -13
  49. package/src/js/parsers/poscar.ts +0 -218
  50. package/src/js/parsers/xyz.ts +0 -190
  51. package/src/js/parsers/xyz_combinatorial_basis.ts +0 -268
  52. package/src/js/tools/basis.ts +0 -131
  53. package/src/js/tools/cell.ts +0 -40
  54. package/src/js/tools/index.ts +0 -11
  55. package/src/js/tools/material.ts +0 -64
  56. package/src/js/tools/supercell.ts +0 -89
  57. package/src/js/tools/surface.ts +0 -213
  58. package/src/py/__init__.py +0 -0
  59. package/src/py/mat3ra/__init__.py +0 -1
  60. package/src/py/mat3ra/made/__init__.py +0 -7
  61. package/src/py/mat3ra/made/basis/__init__.py +0 -255
  62. package/src/py/mat3ra/made/basis/coordinates.py +0 -43
  63. package/src/py/mat3ra/made/cell/__init__.py +0 -55
  64. package/src/py/mat3ra/made/cell/primitive_cell.py +0 -156
  65. package/src/py/mat3ra/made/data_helper.py +0 -5
  66. package/src/py/mat3ra/made/lattice.py +0 -195
  67. package/src/py/mat3ra/made/material.py +0 -135
  68. package/src/py/mat3ra/made/metadata.py +0 -45
  69. package/src/py/mat3ra/made/reciprocal/__init__.py +0 -5
  70. package/src/py/mat3ra/made/reciprocal/lattice_reciprocal.py +0 -147
  71. package/src/py/mat3ra/made/reciprocal/paths.py +0 -30
  72. package/src/py/mat3ra/made/reciprocal/symmetry_points.py +0 -385
  73. package/src/py/mat3ra/made/tools/README.md +0 -173
  74. package/src/py/mat3ra/made/tools/__init__.py +0 -0
  75. package/src/py/mat3ra/made/tools/analyze/__init__.py +0 -31
  76. package/src/py/mat3ra/made/tools/analyze/basis/__init__.py +0 -3
  77. package/src/py/mat3ra/made/tools/analyze/basis/analyzer.py +0 -50
  78. package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer.py +0 -32
  79. package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer_factory.py +0 -31
  80. package/src/py/mat3ra/made/tools/analyze/coordination.py +0 -56
  81. package/src/py/mat3ra/made/tools/analyze/crystal_site/__init__.py +0 -0
  82. package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_crystal_site_material_analyzer.py +0 -35
  83. package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_material_analyzer.py +0 -49
  84. package/src/py/mat3ra/made/tools/analyze/crystal_site/crystal_site_analyzer.py +0 -65
  85. package/src/py/mat3ra/made/tools/analyze/crystal_site/voronoi_crystal_site_analyzer.py +0 -47
  86. package/src/py/mat3ra/made/tools/analyze/enums.py +0 -33
  87. package/src/py/mat3ra/made/tools/analyze/fingerprint/__init__.py +0 -4
  88. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/__init__.py +0 -0
  89. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/layered_fingerprint_along_axis.py +0 -83
  90. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/unique_element_string_per_layer.py +0 -9
  91. package/src/py/mat3ra/made/tools/analyze/interface/__init__.py +0 -20
  92. package/src/py/mat3ra/made/tools/analyze/interface/commensurate.py +0 -156
  93. package/src/py/mat3ra/made/tools/analyze/interface/enums.py +0 -60
  94. package/src/py/mat3ra/made/tools/analyze/interface/grain_boundary.py +0 -80
  95. package/src/py/mat3ra/made/tools/analyze/interface/simple.py +0 -251
  96. package/src/py/mat3ra/made/tools/analyze/interface/twisted_nanoribbons.py +0 -91
  97. package/src/py/mat3ra/made/tools/analyze/interface/utils/__init__.py +0 -77
  98. package/src/py/mat3ra/made/tools/analyze/interface/utils/holders.py +0 -14
  99. package/src/py/mat3ra/made/tools/analyze/interface/utils/vector.py +0 -56
  100. package/src/py/mat3ra/made/tools/analyze/interface/zsl.py +0 -259
  101. package/src/py/mat3ra/made/tools/analyze/interface_material.py +0 -45
  102. package/src/py/mat3ra/made/tools/analyze/lattice/__init__.py +0 -2
  103. package/src/py/mat3ra/made/tools/analyze/lattice/analyzer.py +0 -126
  104. package/src/py/mat3ra/made/tools/analyze/lattice/helpers.py +0 -31
  105. package/src/py/mat3ra/made/tools/analyze/lattice_lines.py +0 -30
  106. package/src/py/mat3ra/made/tools/analyze/lattice_planes.py +0 -192
  107. package/src/py/mat3ra/made/tools/analyze/lattice_swap_analyzer.py +0 -105
  108. package/src/py/mat3ra/made/tools/analyze/material.py +0 -276
  109. package/src/py/mat3ra/made/tools/analyze/other.py +0 -434
  110. package/src/py/mat3ra/made/tools/analyze/rdf.py +0 -74
  111. package/src/py/mat3ra/made/tools/analyze/slab.py +0 -76
  112. package/src/py/mat3ra/made/tools/analyze/solid_solution_analyzer.py +0 -171
  113. package/src/py/mat3ra/made/tools/analyze/terrace.py +0 -105
  114. package/src/py/mat3ra/made/tools/analyze/utils.py +0 -162
  115. package/src/py/mat3ra/made/tools/bond_directions/__init__.py +0 -0
  116. package/src/py/mat3ra/made/tools/bond_directions/bond_directions.py +0 -150
  117. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_for_element_list.py +0 -7
  118. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_enum.py +0 -8
  119. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_for_element.py +0 -16
  120. package/src/py/mat3ra/made/tools/build/__init__.py +0 -25
  121. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/__init__.py +0 -7
  122. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/helpers.py +0 -59
  123. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/types.py +0 -26
  124. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/utils.py +0 -139
  125. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/__init__.py +0 -47
  126. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/__init__.py +0 -11
  127. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/build_parameters.py +0 -5
  128. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/builder.py +0 -164
  129. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/configuration.py +0 -48
  130. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/helpers.py +0 -134
  131. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/__init__.py +0 -6
  132. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/helpers.py +0 -157
  133. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/enums.py +0 -7
  134. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/__init__.py +0 -7
  135. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/configuration.py +0 -13
  136. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/helpers.py +0 -70
  137. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/utils.py +0 -87
  138. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/__init__.py +0 -6
  139. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/helpers.py +0 -129
  140. package/src/py/mat3ra/made/tools/build/defective_structures/__init__.py +0 -0
  141. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/__init__.py +0 -0
  142. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/__init__.py +0 -0
  143. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/build_parameters.py +0 -12
  144. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/builder.py +0 -17
  145. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/configuration.py +0 -40
  146. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/helpers.py +0 -82
  147. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/__init__.py +0 -1
  148. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/__init__.py +0 -9
  149. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/builder.py +0 -37
  150. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/configuration.py +0 -30
  151. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/enums.py +0 -8
  152. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/helpers.py +0 -76
  153. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/__init__.py +0 -0
  154. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/__init__.py +0 -0
  155. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/builder.py +0 -11
  156. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/configuration.py +0 -18
  157. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/helpers.py +0 -137
  158. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/types.py +0 -22
  159. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/__init__.py +0 -0
  160. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/builder.py +0 -28
  161. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/configuration.py +0 -55
  162. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/helpers.py +0 -75
  163. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/builder.py +0 -15
  164. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/configuration.py +0 -16
  165. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/helpers.py +0 -116
  166. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/build_parameters.py +0 -10
  167. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/builder.py +0 -30
  168. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/configuration.py +0 -11
  169. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/helpers.py +0 -78
  170. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/__init__.py +0 -0
  171. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/__init__.py +0 -0
  172. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/builder.py +0 -31
  173. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/configuration.py +0 -45
  174. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/helpers.py +0 -80
  175. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/__init__.py +0 -40
  176. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/atom_placement_method_enum.py +0 -14
  177. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/__init__.py +0 -7
  178. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/builder.py +0 -42
  179. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/configuration.py +0 -27
  180. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/complex_defect_type_enum.py +0 -5
  181. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/factories.py +0 -69
  182. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/helpers.py +0 -92
  183. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/__init__.py +0 -7
  184. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/builder.py +0 -8
  185. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/configuration.py +0 -29
  186. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/helpers.py +0 -48
  187. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/interstitial_placement_method_enum.py +0 -8
  188. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/point_defect_type_enum.py +0 -8
  189. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/__init__.py +0 -7
  190. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/builder.py +0 -6
  191. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/configuration.py +0 -41
  192. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/helpers.py +0 -43
  193. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/substitution_placement_method_enum.py +0 -7
  194. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/types.py +0 -24
  195. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/__init__.py +0 -7
  196. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/builder.py +0 -19
  197. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/configuration.py +0 -27
  198. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/helpers.py +0 -42
  199. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/vacancy_placement_method_enum.py +0 -7
  200. package/src/py/mat3ra/made/tools/build/pristine_structures/__init__.py +0 -0
  201. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/__init__.py +0 -0
  202. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/builder.py +0 -80
  203. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/configurations.py +0 -22
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  205. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/__init__.py +0 -0
  206. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/__init__.py +0 -29
  207. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/build_parameters.py +0 -5
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  209. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/configuration.py +0 -33
  210. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/helpers.py +0 -76
  211. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/__init__.py +0 -11
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  216. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/__init__.py +0 -9
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  219. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/configuration.py +0 -99
  220. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/helpers.py +0 -95
  221. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/termination_utils.py +0 -14
  222. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/utils.py +0 -61
  223. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab_strained_supercell/builder.py +0 -22
  224. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab_strained_supercell/configuration.py +0 -17
  225. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/__init__.py +0 -0
  226. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/__init__.py +0 -19
  227. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/analyzer.py +0 -86
  228. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/ase_based/__init__.py +0 -7
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  231. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/enums.py +0 -42
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  480. package/tests/py/unit/test_tools_build_monolayer.py +0 -33
  481. package/tests/py/unit/test_tools_build_nanoparticle.py +0 -42
  482. package/tests/py/unit/test_tools_build_nanoribbon.py +0 -45
  483. package/tests/py/unit/test_tools_build_passivation.py +0 -85
  484. package/tests/py/unit/test_tools_build_perturbation.py +0 -103
  485. package/tests/py/unit/test_tools_build_slab.py +0 -382
  486. package/tests/py/unit/test_tools_build_strain.py +0 -36
  487. package/tests/py/unit/test_tools_build_supercell.py +0 -47
  488. package/tests/py/unit/test_tools_calculate.py +0 -67
  489. package/tests/py/unit/test_tools_convert.py +0 -174
  490. package/tests/py/unit/test_tools_modify.py +0 -248
  491. package/tests/py/unit/utils.py +0 -142
  492. package/tsconfig-transpile.json +0 -3
  493. package/tsconfig.json +0 -3
@@ -1,102 +0,0 @@
1
- GRAPHENE_NANORIBBON_ARMCHAIR = {
2
- "name": "Graphene - Armchair Nanoribbon (11)",
3
- "basis": {
4
- "elements": [
5
- {"id": 0, "value": "C"},
6
- {"id": 1, "value": "C"},
7
- {"id": 2, "value": "C"},
8
- {"id": 3, "value": "C"},
9
- {"id": 4, "value": "C"},
10
- {"id": 5, "value": "C"},
11
- {"id": 6, "value": "C"},
12
- {"id": 7, "value": "C"},
13
- {"id": 8, "value": "C"},
14
- {"id": 9, "value": "C"},
15
- {"id": 10, "value": "C"},
16
- {"id": 11, "value": "C"},
17
- {"id": 12, "value": "C"},
18
- {"id": 13, "value": "C"},
19
- {"id": 14, "value": "C"},
20
- {"id": 15, "value": "C"},
21
- {"id": 16, "value": "C"},
22
- {"id": 17, "value": "C"},
23
- {"id": 18, "value": "C"},
24
- {"id": 19, "value": "C"},
25
- {"id": 20, "value": "C"},
26
- {"id": 21, "value": "C"},
27
- {"id": 22, "value": "C"},
28
- {"id": 23, "value": "C"},
29
- {"id": 24, "value": "C"},
30
- {"id": 25, "value": "C"},
31
- {"id": 26, "value": "C"},
32
- {"id": 27, "value": "C"},
33
- {"id": 28, "value": "C"},
34
- {"id": 29, "value": "C"},
35
- {"id": 30, "value": "C"},
36
- {"id": 31, "value": "C"},
37
- {"id": 32, "value": "C"},
38
- {"id": 33, "value": "C"},
39
- {"id": 34, "value": "C"},
40
- {"id": 35, "value": "C"},
41
- {"id": 36, "value": "C"},
42
- {"id": 37, "value": "C"},
43
- {"id": 38, "value": "C"},
44
- {"id": 39, "value": "C"},
45
- ],
46
- "coordinates": [
47
- {"id": 0, "value": [0.145390619, 0.279079446, 1e-06]},
48
- {"id": 1, "value": [0.274339538, 0.279079446, 1e-06]},
49
- {"id": 2, "value": [0.822372103, 0.389539724, 1e-06]},
50
- {"id": 3, "value": [0.177627897, 0.389539724, 1e-06]},
51
- {"id": 4, "value": [0.725660463, 0.5, 1e-06]},
52
- {"id": 5, "value": [0.854609381, 0.5, 1e-06]},
53
- {"id": 6, "value": [0.628948822, 0.610460276, 1e-06]},
54
- {"id": 7, "value": [0.757897741, 0.610460276, 1e-06]},
55
- {"id": 8, "value": [0.532237182, 0.720920554, 1e-06]},
56
- {"id": 9, "value": [0.6611861, 0.720920554, 1e-06]},
57
- {"id": 10, "value": [0.3388139, 0.279079446, 1e-06]},
58
- {"id": 11, "value": [0.467762819, 0.279079446, 1e-06]},
59
- {"id": 12, "value": [0.24210226, 0.389539724, 1e-06]},
60
- {"id": 13, "value": [0.371051178, 0.389539724, 1e-06]},
61
- {"id": 14, "value": [0.145390619, 0.5, 1e-06]},
62
- {"id": 15, "value": [0.274339538, 0.5, 1e-06]},
63
- {"id": 16, "value": [0.822372103, 0.610460276, 1e-06]},
64
- {"id": 17, "value": [0.177627897, 0.610460276, 1e-06]},
65
- {"id": 18, "value": [0.725660463, 0.720920554, 1e-06]},
66
- {"id": 19, "value": [0.854609381, 0.720920554, 1e-06]},
67
- {"id": 20, "value": [0.532237182, 0.279079446, 1e-06]},
68
- {"id": 21, "value": [0.6611861, 0.279079446, 1e-06]},
69
- {"id": 22, "value": [0.435525541, 0.389539724, 1e-06]},
70
- {"id": 23, "value": [0.56447446, 0.389539724, 1e-06]},
71
- {"id": 24, "value": [0.3388139, 0.5, 1e-06]},
72
- {"id": 25, "value": [0.467762819, 0.5, 1e-06]},
73
- {"id": 26, "value": [0.24210226, 0.610460276, 1e-06]},
74
- {"id": 27, "value": [0.371051178, 0.610460276, 1e-06]},
75
- {"id": 28, "value": [0.145390619, 0.720920554, 1e-06]},
76
- {"id": 29, "value": [0.274339538, 0.720920554, 1e-06]},
77
- {"id": 30, "value": [0.725660463, 0.279079446, 1e-06]},
78
- {"id": 31, "value": [0.854609381, 0.279079446, 1e-06]},
79
- {"id": 32, "value": [0.628948822, 0.389539724, 1e-06]},
80
- {"id": 33, "value": [0.757897741, 0.389539724, 1e-06]},
81
- {"id": 34, "value": [0.532237182, 0.5, 1e-06]},
82
- {"id": 35, "value": [0.6611861, 0.5, 1e-06]},
83
- {"id": 36, "value": [0.435525541, 0.610460276, 1e-06]},
84
- {"id": 37, "value": [0.56447446, 0.610460276, 1e-06]},
85
- {"id": 38, "value": [0.3388139, 0.720920554, 1e-06]},
86
- {"id": 39, "value": [0.467762819, 0.720920554, 1e-06]},
87
- ],
88
- "units": "crystal",
89
- "labels": [],
90
- "constraints": [],
91
- },
92
- "lattice": {
93
- "a": 22.093893476,
94
- "b": 11.1682275,
95
- "c": 20.0,
96
- "alpha": 90.0,
97
- "beta": 90.0,
98
- "gamma": 90.0,
99
- "units": {"length": "angstrom", "angle": "degree"},
100
- "type": "TRI",
101
- },
102
- }
@@ -1,145 +0,0 @@
1
- from typing import Any, Dict
2
-
3
- from ..monolayer import GRAPHENE
4
-
5
- GRAPHENE_ZIGZAG_NANORIBBON: Dict[str, Any] = {
6
- "name": "Graphene (Zigzag nanoribbon)",
7
- "basis": {
8
- "elements": [
9
- {"id": 0, "value": "C"},
10
- {"id": 1, "value": "C"},
11
- {"id": 2, "value": "C"},
12
- {"id": 3, "value": "C"},
13
- {"id": 4, "value": "C"},
14
- {"id": 5, "value": "C"},
15
- {"id": 6, "value": "C"},
16
- {"id": 7, "value": "C"},
17
- {"id": 8, "value": "C"},
18
- {"id": 9, "value": "C"},
19
- {"id": 10, "value": "C"},
20
- {"id": 11, "value": "C"},
21
- {"id": 12, "value": "C"},
22
- {"id": 13, "value": "C"},
23
- {"id": 14, "value": "C"},
24
- {"id": 15, "value": "C"},
25
- ],
26
- "coordinates": [
27
- {"id": 0, "value": [0.062499937, 0.366666681, 0.5]},
28
- {"id": 1, "value": [0.312499937, 0.366666681, 0.5]},
29
- {"id": 2, "value": [0.187500062, 0.433333286, 0.5]},
30
- {"id": 3, "value": [0.187499937, 0.566666695, 0.5]},
31
- {"id": 4, "value": [0.062500062, 0.6333333, 0.5]},
32
- {"id": 5, "value": [0.562499937, 0.366666681, 0.5]},
33
- {"id": 6, "value": [0.437500062, 0.433333286, 0.5]},
34
- {"id": 7, "value": [0.437499937, 0.566666695, 0.5]},
35
- {"id": 8, "value": [0.312500062, 0.6333333, 0.5]},
36
- {"id": 9, "value": [0.812499938, 0.366666681, 0.5]},
37
- {"id": 10, "value": [0.687500062, 0.433333286, 0.5]},
38
- {"id": 11, "value": [0.687499937, 0.566666695, 0.5]},
39
- {"id": 12, "value": [0.562500062, 0.6333333, 0.5]},
40
- {"id": 13, "value": [0.937500063, 0.433333286, 0.5]},
41
- {"id": 14, "value": [0.937499937, 0.566666695, 0.5]},
42
- {"id": 15, "value": [0.812500063, 0.6333333, 0.5]},
43
- ],
44
- "units": "crystal",
45
- "constraints": [],
46
- "labels": [],
47
- },
48
- "lattice": {
49
- "a": 9.869164,
50
- "b": 10.683683422,
51
- "c": 20.0,
52
- "alpha": 90.0,
53
- "beta": 90.0,
54
- "gamma": 90.0,
55
- "units": {"length": "angstrom", "angle": "degree"},
56
- "type": "TRI",
57
- },
58
- "isNonPeriodic": False,
59
- "metadata": {
60
- "boundaryConditions": {"type": "pbc", "offset": 0},
61
- "build": [
62
- {
63
- "configuration": {
64
- "material": GRAPHENE,
65
- "width": 2,
66
- "length": 4,
67
- "vacuum_width": 3,
68
- "vacuum_length": 0,
69
- "edge_type": "zigzag",
70
- }
71
- }
72
- ],
73
- },
74
- }
75
-
76
- GRAPHENE_ARMCHAIR_NANORIBBON = {
77
- "name": "Graphene (Armchair nanoribbon)",
78
- "basis": {
79
- "elements": [
80
- {"id": 0, "value": "C"},
81
- {"id": 1, "value": "C"},
82
- {"id": 2, "value": "C"},
83
- {"id": 3, "value": "C"},
84
- {"id": 4, "value": "C"},
85
- {"id": 5, "value": "C"},
86
- {"id": 6, "value": "C"},
87
- {"id": 7, "value": "C"},
88
- {"id": 8, "value": "C"},
89
- {"id": 9, "value": "C"},
90
- {"id": 10, "value": "C"},
91
- {"id": 11, "value": "C"},
92
- {"id": 12, "value": "C"},
93
- {"id": 13, "value": "C"},
94
- {"id": 14, "value": "C"},
95
- {"id": 15, "value": "C"},
96
- ],
97
- "coordinates": [
98
- {"id": 0, "value": [0.958333362, 0.35000006, 0.5]},
99
- {"id": 1, "value": [0.791666617, 0.34999996, 0.5]},
100
- {"id": 2, "value": [0.958333362, 0.550000054, 0.5]},
101
- {"id": 3, "value": [0.791666617, 0.549999954, 0.5]},
102
- {"id": 4, "value": [0.708333369, 0.450000057, 0.5]},
103
- {"id": 5, "value": [0.541666624, 0.449999957, 0.5]},
104
- {"id": 6, "value": [0.458333376, 0.35000006, 0.5]},
105
- {"id": 7, "value": [0.291666631, 0.34999996, 0.5]},
106
- {"id": 8, "value": [0.708333369, 0.650000051, 0.5]},
107
- {"id": 9, "value": [0.541666624, 0.649999951, 0.5]},
108
- {"id": 10, "value": [0.458333376, 0.550000054, 0.5]},
109
- {"id": 11, "value": [0.291666631, 0.549999954, 0.5]},
110
- {"id": 12, "value": [0.208333383, 0.450000057, 0.5]},
111
- {"id": 13, "value": [0.041666638, 0.449999957, 0.5]},
112
- {"id": 14, "value": [0.208333383, 0.650000051, 0.5]},
113
- {"id": 15, "value": [0.041666638, 0.649999951, 0.5]},
114
- ],
115
- "units": "crystal",
116
- "constraints": [],
117
- "labels": [],
118
- },
119
- "lattice": {
120
- "a": 8.546946738,
121
- "b": 12.336455,
122
- "c": 20.0,
123
- "alpha": 90.0,
124
- "beta": 90.0,
125
- "gamma": 90.0,
126
- "units": {"length": "angstrom", "angle": "degree"},
127
- "type": "TRI",
128
- },
129
- "isNonPeriodic": False,
130
- "metadata": {
131
- "boundaryConditions": {"type": "pbc", "offset": 0},
132
- "build": [
133
- {
134
- "configuration": {
135
- "material": GRAPHENE,
136
- "width": 2,
137
- "length": 4,
138
- "vacuum_width": 3,
139
- "vacuum_length": 0,
140
- "edge_type": "armchair",
141
- }
142
- }
143
- ],
144
- },
145
- }
@@ -1,54 +0,0 @@
1
- GRAPHENE_NANORIBBON_ZIGZAG = {
2
- "name": "Graphene - Zigzag Nanoribbon (01)",
3
- "basis": {
4
- "elements": [
5
- {"id": 0, "value": "C"},
6
- {"id": 1, "value": "C"},
7
- {"id": 2, "value": "C"},
8
- {"id": 3, "value": "C"},
9
- {"id": 4, "value": "C"},
10
- {"id": 5, "value": "C"},
11
- {"id": 6, "value": "C"},
12
- {"id": 7, "value": "C"},
13
- {"id": 8, "value": "C"},
14
- {"id": 9, "value": "C"},
15
- {"id": 10, "value": "C"},
16
- {"id": 11, "value": "C"},
17
- {"id": 12, "value": "C"},
18
- {"id": 13, "value": "C"},
19
- {"id": 14, "value": "C"},
20
- {"id": 15, "value": "C"},
21
- ],
22
- "coordinates": [
23
- {"id": 0, "value": [0.2096165, 0.346390806, 1e-06]},
24
- {"id": 1, "value": [0.292583285, 0.423195346, 1e-06]},
25
- {"id": 2, "value": [0.790383415, 0.576804655, 1e-06]},
26
- {"id": 3, "value": [0.209616584, 0.653609193, 1e-06]},
27
- {"id": 4, "value": [0.375549904, 0.346390806, 1e-06]},
28
- {"id": 5, "value": [0.45851669, 0.423195346, 1e-06]},
29
- {"id": 6, "value": [0.292583202, 0.576804655, 1e-06]},
30
- {"id": 7, "value": [0.375549987, 0.653609193, 1e-06]},
31
- {"id": 8, "value": [0.54148331, 0.346390806, 1e-06]},
32
- {"id": 9, "value": [0.624450094, 0.423195346, 1e-06]},
33
- {"id": 10, "value": [0.458516608, 0.576804655, 1e-06]},
34
- {"id": 11, "value": [0.541483392, 0.653609193, 1e-06]},
35
- {"id": 12, "value": [0.707416713, 0.346390806, 1e-06]},
36
- {"id": 13, "value": [0.7903835, 0.423195346, 1e-06]},
37
- {"id": 14, "value": [0.624450012, 0.576804655, 1e-06]},
38
- {"id": 15, "value": [0.707416796, 0.653609193, 1e-06]},
39
- ],
40
- "units": "crystal",
41
- "labels": [],
42
- "constraints": [],
43
- },
44
- "lattice": {
45
- "a": 14.869164,
46
- "b": 9.273473369,
47
- "c": 20.0,
48
- "alpha": 90.0,
49
- "beta": 90.0,
50
- "gamma": 90.0,
51
- "units": {"length": "angstrom", "angle": "degree"},
52
- "type": "TRI",
53
- },
54
- }
@@ -1,41 +0,0 @@
1
- PAIR_DEFECT_VACANCY_INTERSTITIAL_BULK_PRIMITIVE_Si = {
2
- "name": "Silicon FCC, Pair Defect: Vac + Ge",
3
- "lattice": {
4
- "a": 3.867,
5
- "b": 3.867,
6
- "c": 3.867,
7
- "alpha": 60.0,
8
- "beta": 60.0,
9
- "gamma": 60.0,
10
- "units": {"length": "angstrom", "angle": "degree"},
11
- "type": "FCC",
12
- },
13
- "basis": {
14
- "elements": [{"id": 0, "value": "Si"}, {"id": 2, "value": "Ge"}],
15
- "coordinates": [{"id": 0, "value": [0.25, 0.25, 0.25]}, {"id": 2, "value": [0.5, 0.5, 0.5]}],
16
- "units": "crystal",
17
- "labels": [],
18
- "constraints": [],
19
- },
20
- }
21
-
22
- PAIR_DEFECT_SUBSTITUTION_VACANCY_BULK_PRIMITIVE_Si = {
23
- "name": "Silicon FCC, Pair Defect: Ge + Vac",
24
- "lattice": {
25
- "a": 3.867,
26
- "b": 3.867,
27
- "c": 3.867,
28
- "alpha": 60.0,
29
- "beta": 60.0,
30
- "gamma": 60.0,
31
- "units": {"length": "angstrom", "angle": "degree"},
32
- "type": "FCC",
33
- },
34
- "basis": {
35
- "elements": [{"id": 0, "value": "Ge"}],
36
- "coordinates": [{"id": 0, "value": [0.0, 0.0, 0.0]}],
37
- "units": "crystal",
38
- "labels": [],
39
- "constraints": [],
40
- },
41
- }
@@ -1,69 +0,0 @@
1
- GRAPHENE_ZIGZAG_NANORIBBON_PASSIVATED = {
2
- "name": "Graphene (Zigzag nanoribbon), H-passivated",
3
- "basis": {
4
- "elements": [
5
- {"id": 0, "value": "C"},
6
- {"id": 1, "value": "C"},
7
- {"id": 2, "value": "C"},
8
- {"id": 3, "value": "C"},
9
- {"id": 4, "value": "C"},
10
- {"id": 5, "value": "C"},
11
- {"id": 6, "value": "C"},
12
- {"id": 7, "value": "C"},
13
- {"id": 8, "value": "C"},
14
- {"id": 9, "value": "C"},
15
- {"id": 10, "value": "C"},
16
- {"id": 11, "value": "C"},
17
- {"id": 12, "value": "C"},
18
- {"id": 13, "value": "C"},
19
- {"id": 14, "value": "C"},
20
- {"id": 15, "value": "C"},
21
- {"id": 16, "value": "H"},
22
- {"id": 17, "value": "H"},
23
- {"id": 18, "value": "H"},
24
- {"id": 19, "value": "H"},
25
- {"id": 20, "value": "H"},
26
- {"id": 21, "value": "H"},
27
- {"id": 22, "value": "H"},
28
- {"id": 23, "value": "H"},
29
- ],
30
- "coordinates": [
31
- {"id": 0, "value": [0.062499937, 0.366666681, 0.5]},
32
- {"id": 1, "value": [0.312499937, 0.366666681, 0.5]},
33
- {"id": 2, "value": [0.187500062, 0.433333286, 0.5]},
34
- {"id": 3, "value": [0.187499937, 0.566666695, 0.5]},
35
- {"id": 4, "value": [0.062500062, 0.6333333, 0.5]},
36
- {"id": 5, "value": [0.562499937, 0.366666681, 0.5]},
37
- {"id": 6, "value": [0.437500062, 0.433333286, 0.5]},
38
- {"id": 7, "value": [0.437499937, 0.566666695, 0.5]},
39
- {"id": 8, "value": [0.312500062, 0.6333333, 0.5]},
40
- {"id": 9, "value": [0.812499938, 0.366666681, 0.5]},
41
- {"id": 10, "value": [0.687500062, 0.433333286, 0.5]},
42
- {"id": 11, "value": [0.687499937, 0.566666695, 0.5]},
43
- {"id": 12, "value": [0.562500062, 0.6333333, 0.5]},
44
- {"id": 13, "value": [0.937500063, 0.433333286, 0.5]},
45
- {"id": 14, "value": [0.937499937, 0.566666695, 0.5]},
46
- {"id": 15, "value": [0.812500063, 0.6333333, 0.5]},
47
- {"id": 16, "value": [0.062500067, 0.228137674, 0.5]},
48
- {"id": 17, "value": [0.312500067, 0.228137674, 0.5]},
49
- {"id": 18, "value": [0.062499932, 0.771862307, 0.5]},
50
- {"id": 19, "value": [0.562500067, 0.228137674, 0.5]},
51
- {"id": 20, "value": [0.312499932, 0.771862307, 0.5]},
52
- {"id": 21, "value": [0.812500068, 0.228137674, 0.5]},
53
- {"id": 22, "value": [0.562499932, 0.771862307, 0.5]},
54
- {"id": 23, "value": [0.812499933, 0.771862307, 0.5]},
55
- ],
56
- "units": "crystal",
57
- "labels": [],
58
- },
59
- "lattice": {
60
- "a": 9.869164,
61
- "b": 10.683683422,
62
- "c": 20.0,
63
- "alpha": 90.0,
64
- "beta": 90.0,
65
- "gamma": 90.0,
66
- "units": {"length": "angstrom", "angle": "degree"},
67
- "type": "TRI",
68
- },
69
- }
@@ -1,58 +0,0 @@
1
- PASSIVATED_SI_CONVENTIONAL_SLAB_001 = {
2
- "name": "Si(001), termination Si_P4/mmm_2, Slab, H-passivated",
3
- "basis": {
4
- "elements": [
5
- {"id": 0, "value": "Si"},
6
- {"id": 1, "value": "Si"},
7
- {"id": 2, "value": "Si"},
8
- {"id": 3, "value": "Si"},
9
- {"id": 4, "value": "Si"},
10
- {"id": 5, "value": "Si"},
11
- {"id": 6, "value": "Si"},
12
- {"id": 7, "value": "Si"},
13
- {"id": 8, "value": "Si"},
14
- {"id": 9, "value": "Si"},
15
- {"id": 10, "value": "Si"},
16
- {"id": 11, "value": "Si"},
17
- {"id": 12, "value": "Si"},
18
- {"id": 13, "value": "Si"},
19
- {"id": 14, "value": "Si"},
20
- {"id": 15, "value": "Si"},
21
- {"id": 16, "value": "H"},
22
- {"id": 17, "value": "H"},
23
- ],
24
- "coordinates": [
25
- {"id": 0, "value": [0.5, 0, 0.257353832]},
26
- {"id": 1, "value": [0.25, 0.25, 0.17156945]},
27
- {"id": 2, "value": [0.5, 0.5, 0.085785068]},
28
- {"id": 3, "value": [0.25, 0.75, 6.86e-7]},
29
- {"id": 4, "value": [0, 0, 0.085785068]},
30
- {"id": 5, "value": [0.75, 0.25, 6.86e-7]},
31
- {"id": 6, "value": [0, 0.5, 0.257353832]},
32
- {"id": 7, "value": [0.75, 0.75, 0.17156945]},
33
- {"id": 8, "value": [0.5, 0, 0.600491359]},
34
- {"id": 9, "value": [0.25, 0.25, 0.514706977]},
35
- {"id": 10, "value": [0.5, 0.5, 0.428922596]},
36
- {"id": 11, "value": [0.25, 0.75, 0.343138214]},
37
- {"id": 12, "value": [0, 0, 0.428922596]},
38
- {"id": 13, "value": [0.75, 0.25, 0.343138214]},
39
- {"id": 14, "value": [0, 0.5, 0.600491359]},
40
- {"id": 15, "value": [0.75, 0.75, 0.514706977]},
41
- {"id": 16, "value": [0.5, 0, 0.693353943]},
42
- {"id": 17, "value": [0, 0.5, 0.693353943]},
43
- ],
44
- "units": "crystal",
45
- "labels": [],
46
- "constraints": [],
47
- },
48
- "lattice": {
49
- "a": 5.468763846,
50
- "b": 5.468763846,
51
- "c": 15.937527692,
52
- "alpha": 90,
53
- "beta": 90,
54
- "gamma": 90,
55
- "units": {"length": "angstrom", "angle": "degree"},
56
- "type": "TRI",
57
- },
58
- }
@@ -1,158 +0,0 @@
1
- from unit.utils import OSPlatform
2
-
3
- VACANCY_DEFECT_BULK_PRIMITIVE_Si = {
4
- "name": "Silicon FCC with vacancy defect",
5
- "lattice": {
6
- "a": 3.867,
7
- "b": 3.867,
8
- "c": 3.867,
9
- "alpha": 60.0,
10
- "beta": 60.0,
11
- "gamma": 60.0,
12
- "units": {"length": "angstrom", "angle": "degree"},
13
- "type": "FCC",
14
- },
15
- "basis": {
16
- "elements": [{"id": 0, "value": "Si"}],
17
- "coordinates": [{"id": 0, "value": [0.25, 0.25, 0.25]}],
18
- "units": "crystal",
19
- "labels": [],
20
- "constraints": [],
21
- },
22
- }
23
-
24
- SUBSTITUTION_DEFECT_BULK_PRIMITIVE_Si = {
25
- "name": "Silicon FCC with substitutional defect",
26
- "lattice": {
27
- "a": 3.867,
28
- "b": 3.867,
29
- "c": 3.867,
30
- "alpha": 60.0,
31
- "beta": 60.0,
32
- "gamma": 60.0,
33
- "units": {"length": "angstrom", "angle": "degree"},
34
- "type": "FCC",
35
- },
36
- "basis": {
37
- "elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Ge"}],
38
- "coordinates": [{"id": 0, "value": [0.25, 0.25, 0.25]}, {"id": 1, "value": [0.0, 0.0, 0.0]}],
39
- "units": "crystal",
40
- "labels": [],
41
- "constraints": [],
42
- },
43
- }
44
-
45
- INTERSTITIAL_DEFECT_BULK_PRIMITIVE_Si = {
46
- "name": "Silicon FCC with interstitial defect",
47
- "lattice": {
48
- "a": 3.867,
49
- "b": 3.867,
50
- "c": 3.867,
51
- "alpha": 60.0,
52
- "beta": 60.0,
53
- "gamma": 60.0,
54
- "units": {"length": "angstrom", "angle": "degree"},
55
- "type": "FCC",
56
- },
57
- "basis": {
58
- "elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Si"}, {"id": 2, "value": "C"}],
59
- "coordinates": [
60
- {"id": 0, "value": [0.0, 0.0, 0.0]},
61
- {"id": 1, "value": [0.25, 0.25, 0.25]},
62
- {"id": 2, "value": [0.5, 0.5, 0.5]},
63
- ],
64
- "units": "crystal",
65
- "labels": [],
66
- "constraints": [],
67
- },
68
- }
69
-
70
- INTERSTITIAL_VORONOI_DEFECT_BULK_PRIMITIVE_Si = {
71
- OSPlatform.DARWIN: {
72
- "name": "Silicon FCC with interstitial defect",
73
- "basis": {
74
- "elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Si"}, {"id": 2, "value": "Ge"}],
75
- "coordinates": [
76
- {"id": 0, "value": [0.0, 0.0, 0.0]},
77
- {"id": 1, "value": [0.25, 0.25, 0.25]},
78
- {"id": 2, "value": [0.625, 0.625, 0.125]},
79
- ],
80
- "units": "crystal",
81
- "labels": [],
82
- "constraints": [],
83
- },
84
- "lattice": {
85
- "a": 3.867,
86
- "b": 3.867,
87
- "c": 3.867,
88
- "alpha": 60.0,
89
- "beta": 60.0,
90
- "gamma": 60.0,
91
- "units": {"length": "angstrom", "angle": "degree"},
92
- "type": "FCC",
93
- },
94
- },
95
- OSPlatform.OTHER: {
96
- "name": "Silicon FCC with interstitial defect",
97
- "basis": {
98
- "elements": [{"id": 0, "value": "Si"}, {"id": 1, "value": "Si"}, {"id": 2, "value": "Ge"}],
99
- "coordinates": [
100
- {"id": 0, "value": [0.0, 0.0, 0.0]},
101
- {"id": 1, "value": [0.25, 0.25, 0.25]},
102
- {"id": 2, "value": [0.5, 0.5, 0.5]},
103
- ],
104
- "units": "crystal",
105
- "labels": [],
106
- "constraints": [],
107
- },
108
- "lattice": {
109
- "a": 3.867,
110
- "b": 3.867,
111
- "c": 3.867,
112
- "alpha": 60.0,
113
- "beta": 60.0,
114
- "gamma": 60.0,
115
- "units": {"length": "angstrom", "angle": "degree"},
116
- "type": "FCC",
117
- },
118
- },
119
- }
120
-
121
- MULTIPLE_POINT_DEFECTS_BULK_Si_CONVENTIONAL = {
122
- "name": "Si8 with vacancy defect with interstitial defect with substitutional defect",
123
- "basis": {
124
- "elements": [
125
- {"id": 0, "value": "Si"},
126
- {"id": 1, "value": "Si"},
127
- {"id": 2, "value": "Si"},
128
- {"id": 3, "value": "Si"},
129
- {"id": 4, "value": "Si"},
130
- {"id": 5, "value": "Si"},
131
- {"id": 6, "value": "N"},
132
- {"id": 7, "value": "Ge"},
133
- ],
134
- "coordinates": [
135
- {"id": 0, "value": [0.5, 0.0, 0.0]},
136
- {"id": 1, "value": [0.25, 0.25, 0.75]},
137
- {"id": 2, "value": [0.25, 0.75, 0.25]},
138
- {"id": 3, "value": [0.0, 0.0, 0.5]},
139
- {"id": 4, "value": [0.75, 0.25, 0.25]},
140
- {"id": 5, "value": [0.0, 0.5, 0.0]},
141
- {"id": 6, "value": [0.25, 0.25, 0.25]},
142
- {"id": 7, "value": [0.5, 0.5, 0.5]},
143
- ],
144
- "units": "crystal",
145
- "labels": [],
146
- "constraints": [],
147
- },
148
- "lattice": {
149
- "a": 5.468763846,
150
- "b": 5.468763846,
151
- "c": 5.468763846,
152
- "alpha": 90.0,
153
- "beta": 90.0,
154
- "gamma": 90.0,
155
- "units": {"length": "angstrom", "angle": "degree"},
156
- "type": "TRI",
157
- },
158
- }