@mat3ra/made 2026.8.13-0 → 2026.8.26-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (493) hide show
  1. package/package.json +9 -5
  2. package/.babelrc +0 -10
  3. package/.eslintrc.json +0 -11
  4. package/.gitattributes +0 -1
  5. package/.husky/post-checkout +0 -3
  6. package/.husky/post-commit +0 -3
  7. package/.husky/post-merge +0 -3
  8. package/.husky/pre-commit +0 -6
  9. package/.husky/pre-push +0 -3
  10. package/.mocharc.json +0 -5
  11. package/.pre-commit-config.yaml +0 -26
  12. package/.prettierignore +0 -2
  13. package/.prettierrc +0 -6
  14. package/AGENTS.md +0 -133
  15. package/MANIFEST.in +0 -1
  16. package/data/constants.json +0 -13
  17. package/data/reciprocal_paths.json +0 -111
  18. package/images/made/tools/tools_diagram_general.png +0 -3
  19. package/images/made/tools/tools_diagram_interface.png +0 -3
  20. package/pyproject.toml +0 -123
  21. package/scripts/generate-mixins.ts +0 -28
  22. package/src/__init__.py +0 -0
  23. package/src/js/Material.ts +0 -618
  24. package/src/js/basis/basis.ts +0 -634
  25. package/src/js/basis/constrained_basis.ts +0 -115
  26. package/src/js/basis/coordinates.ts +0 -92
  27. package/src/js/basis/elements.ts +0 -24
  28. package/src/js/basis/helpers.ts +0 -20
  29. package/src/js/basis/labels.ts +0 -6
  30. package/src/js/cell/cell.ts +0 -149
  31. package/src/js/cell/conventional_cell.ts +0 -86
  32. package/src/js/cell/primitive_cell.ts +0 -166
  33. package/src/js/constants/molecule.ts +0 -18
  34. package/src/js/constants.ts +0 -4
  35. package/src/js/constraints/constraints.ts +0 -45
  36. package/src/js/generated/MaterialSchemaMixin.ts +0 -79
  37. package/src/js/lattice/lattice.ts +0 -308
  38. package/src/js/lattice/lattice_types.ts +0 -134
  39. package/src/js/lattice/reciprocal/lattice_reciprocal.ts +0 -206
  40. package/src/js/lattice/reciprocal/paths.ts +0 -39
  41. package/src/js/lattice/reciprocal/symmetry_points.ts +0 -886
  42. package/src/js/lattice/unit_cell.ts +0 -66
  43. package/src/js/made.ts +0 -62
  44. package/src/js/parsers/cif.ts +0 -25
  45. package/src/js/parsers/errors.ts +0 -6
  46. package/src/js/parsers/espresso.ts +0 -29
  47. package/src/js/parsers/native_format_parsers.ts +0 -52
  48. package/src/js/parsers/parsers.ts +0 -13
  49. package/src/js/parsers/poscar.ts +0 -218
  50. package/src/js/parsers/xyz.ts +0 -190
  51. package/src/js/parsers/xyz_combinatorial_basis.ts +0 -268
  52. package/src/js/tools/basis.ts +0 -131
  53. package/src/js/tools/cell.ts +0 -40
  54. package/src/js/tools/index.ts +0 -11
  55. package/src/js/tools/material.ts +0 -64
  56. package/src/js/tools/supercell.ts +0 -89
  57. package/src/js/tools/surface.ts +0 -213
  58. package/src/py/__init__.py +0 -0
  59. package/src/py/mat3ra/__init__.py +0 -1
  60. package/src/py/mat3ra/made/__init__.py +0 -7
  61. package/src/py/mat3ra/made/basis/__init__.py +0 -255
  62. package/src/py/mat3ra/made/basis/coordinates.py +0 -43
  63. package/src/py/mat3ra/made/cell/__init__.py +0 -55
  64. package/src/py/mat3ra/made/cell/primitive_cell.py +0 -156
  65. package/src/py/mat3ra/made/data_helper.py +0 -5
  66. package/src/py/mat3ra/made/lattice.py +0 -195
  67. package/src/py/mat3ra/made/material.py +0 -135
  68. package/src/py/mat3ra/made/metadata.py +0 -45
  69. package/src/py/mat3ra/made/reciprocal/__init__.py +0 -5
  70. package/src/py/mat3ra/made/reciprocal/lattice_reciprocal.py +0 -147
  71. package/src/py/mat3ra/made/reciprocal/paths.py +0 -30
  72. package/src/py/mat3ra/made/reciprocal/symmetry_points.py +0 -385
  73. package/src/py/mat3ra/made/tools/README.md +0 -173
  74. package/src/py/mat3ra/made/tools/__init__.py +0 -0
  75. package/src/py/mat3ra/made/tools/analyze/__init__.py +0 -31
  76. package/src/py/mat3ra/made/tools/analyze/basis/__init__.py +0 -3
  77. package/src/py/mat3ra/made/tools/analyze/basis/analyzer.py +0 -50
  78. package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer.py +0 -32
  79. package/src/py/mat3ra/made/tools/analyze/build_metadata_analyzer_factory.py +0 -31
  80. package/src/py/mat3ra/made/tools/analyze/coordination.py +0 -56
  81. package/src/py/mat3ra/made/tools/analyze/crystal_site/__init__.py +0 -0
  82. package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_crystal_site_material_analyzer.py +0 -35
  83. package/src/py/mat3ra/made/tools/analyze/crystal_site/adatom_material_analyzer.py +0 -49
  84. package/src/py/mat3ra/made/tools/analyze/crystal_site/crystal_site_analyzer.py +0 -65
  85. package/src/py/mat3ra/made/tools/analyze/crystal_site/voronoi_crystal_site_analyzer.py +0 -47
  86. package/src/py/mat3ra/made/tools/analyze/enums.py +0 -33
  87. package/src/py/mat3ra/made/tools/analyze/fingerprint/__init__.py +0 -4
  88. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/__init__.py +0 -0
  89. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/layered_fingerprint_along_axis.py +0 -83
  90. package/src/py/mat3ra/made/tools/analyze/fingerprint/layers/unique_element_string_per_layer.py +0 -9
  91. package/src/py/mat3ra/made/tools/analyze/interface/__init__.py +0 -20
  92. package/src/py/mat3ra/made/tools/analyze/interface/commensurate.py +0 -156
  93. package/src/py/mat3ra/made/tools/analyze/interface/enums.py +0 -60
  94. package/src/py/mat3ra/made/tools/analyze/interface/grain_boundary.py +0 -80
  95. package/src/py/mat3ra/made/tools/analyze/interface/simple.py +0 -251
  96. package/src/py/mat3ra/made/tools/analyze/interface/twisted_nanoribbons.py +0 -91
  97. package/src/py/mat3ra/made/tools/analyze/interface/utils/__init__.py +0 -77
  98. package/src/py/mat3ra/made/tools/analyze/interface/utils/holders.py +0 -14
  99. package/src/py/mat3ra/made/tools/analyze/interface/utils/vector.py +0 -56
  100. package/src/py/mat3ra/made/tools/analyze/interface/zsl.py +0 -259
  101. package/src/py/mat3ra/made/tools/analyze/interface_material.py +0 -45
  102. package/src/py/mat3ra/made/tools/analyze/lattice/__init__.py +0 -2
  103. package/src/py/mat3ra/made/tools/analyze/lattice/analyzer.py +0 -126
  104. package/src/py/mat3ra/made/tools/analyze/lattice/helpers.py +0 -31
  105. package/src/py/mat3ra/made/tools/analyze/lattice_lines.py +0 -30
  106. package/src/py/mat3ra/made/tools/analyze/lattice_planes.py +0 -192
  107. package/src/py/mat3ra/made/tools/analyze/lattice_swap_analyzer.py +0 -105
  108. package/src/py/mat3ra/made/tools/analyze/material.py +0 -276
  109. package/src/py/mat3ra/made/tools/analyze/other.py +0 -434
  110. package/src/py/mat3ra/made/tools/analyze/rdf.py +0 -74
  111. package/src/py/mat3ra/made/tools/analyze/slab.py +0 -76
  112. package/src/py/mat3ra/made/tools/analyze/solid_solution_analyzer.py +0 -171
  113. package/src/py/mat3ra/made/tools/analyze/terrace.py +0 -105
  114. package/src/py/mat3ra/made/tools/analyze/utils.py +0 -162
  115. package/src/py/mat3ra/made/tools/bond_directions/__init__.py +0 -0
  116. package/src/py/mat3ra/made/tools/bond_directions/bond_directions.py +0 -150
  117. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_for_element_list.py +0 -7
  118. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_enum.py +0 -8
  119. package/src/py/mat3ra/made/tools/bond_directions/bond_directions_templates_for_element.py +0 -16
  120. package/src/py/mat3ra/made/tools/build/__init__.py +0 -25
  121. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/__init__.py +0 -7
  122. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/helpers.py +0 -59
  123. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/types.py +0 -26
  124. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/heterostructure/utils.py +0 -139
  125. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/__init__.py +0 -47
  126. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/__init__.py +0 -11
  127. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/build_parameters.py +0 -5
  128. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/builder.py +0 -164
  129. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/configuration.py +0 -48
  130. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/base/helpers.py +0 -134
  131. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/__init__.py +0 -6
  132. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/commensurate/helpers.py +0 -157
  133. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/enums.py +0 -7
  134. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/__init__.py +0 -7
  135. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/configuration.py +0 -13
  136. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/twisted/helpers.py +0 -70
  137. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/utils.py +0 -87
  138. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/__init__.py +0 -6
  139. package/src/py/mat3ra/made/tools/build/compound_pristine_structures/two_dimensional/interface/zsl/helpers.py +0 -129
  140. package/src/py/mat3ra/made/tools/build/defective_structures/__init__.py +0 -0
  141. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/__init__.py +0 -0
  142. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/__init__.py +0 -0
  143. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/build_parameters.py +0 -12
  144. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/builder.py +0 -17
  145. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/configuration.py +0 -40
  146. package/src/py/mat3ra/made/tools/build/defective_structures/one_dimensional/grain_boundary_linear/helpers.py +0 -82
  147. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/__init__.py +0 -1
  148. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/__init__.py +0 -9
  149. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/builder.py +0 -37
  150. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/configuration.py +0 -30
  151. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/enums.py +0 -8
  152. package/src/py/mat3ra/made/tools/build/defective_structures/three_dimensional/solid_solution/helpers.py +0 -76
  153. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/__init__.py +0 -0
  154. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/__init__.py +0 -0
  155. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/builder.py +0 -11
  156. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/configuration.py +0 -18
  157. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/helpers.py +0 -137
  158. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/adatom/types.py +0 -22
  159. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/__init__.py +0 -0
  160. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/builder.py +0 -28
  161. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/configuration.py +0 -55
  162. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/grain_boundary_planar/helpers.py +0 -75
  163. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/builder.py +0 -15
  164. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/configuration.py +0 -16
  165. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/island/helpers.py +0 -116
  166. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/build_parameters.py +0 -10
  167. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/builder.py +0 -30
  168. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/configuration.py +0 -11
  169. package/src/py/mat3ra/made/tools/build/defective_structures/two_dimensional/terrace/helpers.py +0 -78
  170. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/__init__.py +0 -0
  171. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/__init__.py +0 -0
  172. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/builder.py +0 -31
  173. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/configuration.py +0 -45
  174. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/pair_defect/helpers.py +0 -80
  175. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/__init__.py +0 -40
  176. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/atom_placement_method_enum.py +0 -14
  177. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/__init__.py +0 -7
  178. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/builder.py +0 -42
  179. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/base/configuration.py +0 -27
  180. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/complex_defect_type_enum.py +0 -5
  181. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/factories.py +0 -69
  182. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/helpers.py +0 -92
  183. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/__init__.py +0 -7
  184. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/builder.py +0 -8
  185. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/configuration.py +0 -29
  186. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/helpers.py +0 -48
  187. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/interstitial/interstitial_placement_method_enum.py +0 -8
  188. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/point_defect_type_enum.py +0 -8
  189. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/__init__.py +0 -7
  190. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/builder.py +0 -6
  191. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/configuration.py +0 -41
  192. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/helpers.py +0 -43
  193. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/substitutional/substitution_placement_method_enum.py +0 -7
  194. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/types.py +0 -24
  195. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/__init__.py +0 -7
  196. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/builder.py +0 -19
  197. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/configuration.py +0 -27
  198. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/helpers.py +0 -42
  199. package/src/py/mat3ra/made/tools/build/defective_structures/zero_dimensional/point_defect/vacancy/vacancy_placement_method_enum.py +0 -7
  200. package/src/py/mat3ra/made/tools/build/pristine_structures/__init__.py +0 -0
  201. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/__init__.py +0 -0
  202. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/builder.py +0 -80
  203. package/src/py/mat3ra/made/tools/build/pristine_structures/three_dimensional/ideal_crystal/configurations.py +0 -22
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  205. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/__init__.py +0 -0
  206. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/__init__.py +0 -29
  207. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/build_parameters.py +0 -5
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  209. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/configuration.py +0 -33
  210. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanoribbon/helpers.py +0 -76
  211. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/nanotape/__init__.py +0 -11
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  216. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/__init__.py +0 -9
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  219. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/configuration.py +0 -99
  220. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/helpers.py +0 -95
  221. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/termination_utils.py +0 -14
  222. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab/utils.py +0 -61
  223. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab_strained_supercell/builder.py +0 -22
  224. package/src/py/mat3ra/made/tools/build/pristine_structures/two_dimensional/slab_strained_supercell/configuration.py +0 -17
  225. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/__init__.py +0 -0
  226. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/__init__.py +0 -19
  227. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/analyzer.py +0 -86
  228. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/ase_based/__init__.py +0 -7
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  231. package/src/py/mat3ra/made/tools/build/pristine_structures/zero_dimensional/nanoparticle/enums.py +0 -42
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  480. package/tests/py/unit/test_tools_build_monolayer.py +0 -33
  481. package/tests/py/unit/test_tools_build_nanoparticle.py +0 -42
  482. package/tests/py/unit/test_tools_build_nanoribbon.py +0 -45
  483. package/tests/py/unit/test_tools_build_passivation.py +0 -85
  484. package/tests/py/unit/test_tools_build_perturbation.py +0 -103
  485. package/tests/py/unit/test_tools_build_slab.py +0 -382
  486. package/tests/py/unit/test_tools_build_strain.py +0 -36
  487. package/tests/py/unit/test_tools_build_supercell.py +0 -47
  488. package/tests/py/unit/test_tools_calculate.py +0 -67
  489. package/tests/py/unit/test_tools_convert.py +0 -174
  490. package/tests/py/unit/test_tools_modify.py +0 -248
  491. package/tests/py/unit/utils.py +0 -142
  492. package/tsconfig-transpile.json +0 -3
  493. package/tsconfig.json +0 -3
@@ -1,115 +0,0 @@
1
- import { AtomicConstraintsSchema, BasisConstrainedSchema } from "@mat3ra/esse/dist/js/types";
2
-
3
- import { Cell } from "../cell/cell";
4
- import { AtomicConstraints, AtomicConstraintValue, Constraint } from "../constraints/constraints";
5
- import { Basis, ElementsAndCoordinatesConfig } from "./basis";
6
- import { AtomicCoordinateValue, Coordinate } from "./coordinates";
7
- import { AtomicElementValue } from "./elements";
8
- import { ElementWithLabel } from "./helpers";
9
- import { AtomicLabelValue } from "./labels";
10
-
11
- export interface ConstrainedBasisConfig extends BasisConstrainedSchema {
12
- cell?: Cell;
13
- isEmpty?: boolean;
14
- }
15
-
16
- export interface ElementsCoordinatesAndConstraintsConfig extends ElementsAndCoordinatesConfig {
17
- constraints: AtomicConstraintValue[];
18
- }
19
-
20
- /**
21
- * @summary Extension of the Basis class able to deal with atomic constraints.
22
- * @extends Basis
23
- */
24
- export class ConstrainedBasis extends Basis<ConstrainedBasisConfig> {
25
- private _constraints: AtomicConstraints;
26
-
27
- constructor(config: ConstrainedBasisConfig) {
28
- super(config);
29
- this._constraints = AtomicConstraints.fromObjects(config.constraints ?? []); // `constraints` is an Array with ids
30
- }
31
-
32
- static fromElementsCoordinatesAndConstraints(
33
- config: ElementsCoordinatesAndConstraintsConfig,
34
- ): ConstrainedBasis {
35
- const basisConfig = this._convertValuesToConfig(config);
36
- const constraints = AtomicConstraints.fromValues(config.constraints);
37
- return new this({
38
- ...basisConfig,
39
- constraints: constraints.toJSON() as AtomicConstraintsSchema,
40
- });
41
- }
42
-
43
- get constraints() {
44
- return this._constraints.toJSON() as AtomicConstraintsSchema;
45
- }
46
-
47
- set constraints(constraints: AtomicConstraintsSchema) {
48
- this._constraints = AtomicConstraints.fromObjects(constraints);
49
- }
50
-
51
- get AtomicConstraints() {
52
- return AtomicConstraints.fromObjects(this.constraints);
53
- }
54
-
55
- override toJSON(exclude: (keyof ConstrainedBasisConfig)[] = ["cell"]): ConstrainedBasisConfig {
56
- return {
57
- ...super.toJSON(exclude as (keyof ConstrainedBasisConfig)[]),
58
- constraints: this.constraints,
59
- };
60
- }
61
-
62
- getConstraintByIndex(idx: number): AtomicConstraintValue {
63
- return this._constraints.getElementValueByIndex(idx) || [true, true, true];
64
- }
65
-
66
- getConstraintById(id: number): AtomicConstraintValue {
67
- return this._constraints.getElementValueById(id) || [true, true, true];
68
- }
69
-
70
- /**
71
- * Helper function returning a nested array with [element, coordinates, constraints] as elements
72
- */
73
- get elementsCoordinatesConstraintsArray(): [
74
- AtomicElementValue,
75
- AtomicLabelValue,
76
- AtomicCoordinateValue,
77
- AtomicConstraintValue,
78
- ][] {
79
- return this._elements.values.map((element: AtomicElementValue, idx: number) => {
80
- const coordinate = this.getCoordinateValueByIndex(idx);
81
- const constraint = this.getConstraintByIndex(idx);
82
- const label = this.atomicLabelsArray[idx];
83
- return [element, label, coordinate, constraint];
84
- });
85
- }
86
-
87
- /**
88
- * Returns an array with atomic positions (with constraints) per atom stored as strings.
89
- * E.g., ``` ['Si 0 0 0 0 1 0', 'Li 0.5 0.5 0.5 1 0 1']```
90
- */
91
- getAtomicPositionsWithConstraintsAsStrings(
92
- coordinatePrintFormat?: string,
93
- precision?: number,
94
- ): string[] {
95
- const omitConstraints = this._constraints.areUnconstrained;
96
- return this.elementsCoordinatesConstraintsArray.map(
97
- ([element, label, coordinate, constraint]) => {
98
- const _elementWithLabel = new ElementWithLabel({ element, label });
99
- const _coordinate = Coordinate.fromValueAndId(coordinate);
100
- const _constraint = Constraint.fromValueAndId(constraint);
101
-
102
- return [
103
- _elementWithLabel.prettyPrint(),
104
- _coordinate.prettyPrint(coordinatePrintFormat, precision),
105
- omitConstraints ? "" : _constraint.prettyPrint(),
106
- ].join(" ");
107
- },
108
- );
109
- }
110
-
111
- removeAllAtoms() {
112
- super.removeAllAtoms();
113
- this.constraints = [];
114
- }
115
- }
@@ -1,92 +0,0 @@
1
- import { RoundedArrayWithIds, RoundedValueWithId, RoundedVector3D, Vector3D } from "@mat3ra/code";
2
- import {
3
- AtomicCoordinateSchema,
4
- Coordinate3DSchema,
5
- Matrix3X3Schema,
6
- Vector3DSchema,
7
- } from "@mat3ra/esse/dist/js/types";
8
- import { Utils } from "@mat3ra/utils";
9
- import { sprintf } from "underscore.string";
10
-
11
- export type AtomicCoordinateValue = AtomicCoordinateSchema["value"];
12
-
13
- type AxisType = "x" | "y" | "z";
14
-
15
- export class Coordinate extends RoundedValueWithId<AtomicCoordinateValue> {
16
- value: AtomicCoordinateValue;
17
-
18
- constructor({ value, id }: AtomicCoordinateSchema) {
19
- super(id, value);
20
- this.value = value;
21
- }
22
-
23
- getValueAlongAxis(axis: AxisType = "z"): number {
24
- const index = { x: 0, y: 1, z: 2 }[axis];
25
- return this.value[index] as number;
26
- }
27
-
28
- translateByVector(vectorAsArray: Vector3DSchema): Coordinate {
29
- const vector3D = new Vector3D(this.value);
30
- this.value = vector3D.translateByVector(vectorAsArray).value;
31
- return this;
32
- }
33
-
34
- get valueRounded(): number[] {
35
- return new RoundedVector3D(this.value).valueRounded;
36
- }
37
-
38
- getValueRoundedWithPrecision(precision: number): number[] {
39
- const RoundedInstance = RoundedVector3D;
40
- RoundedInstance.roundPrecision = precision;
41
- return new RoundedInstance(this.value).valueRounded;
42
- }
43
-
44
- prettyPrint(format = "%14.9f", precision: number = this.precision): string {
45
- return this.getValueRoundedWithPrecision(precision)
46
- .map((x) => sprintf(format, x))
47
- .join(" ");
48
- }
49
- }
50
-
51
- export class Coordinates extends RoundedArrayWithIds<Coordinate3DSchema> {
52
- getValuesAlongAxis(axis: AxisType = "z"): number[] {
53
- return this.values.map((coord) => {
54
- const coordinate = Coordinate.fromValueAndId(coord);
55
- return coordinate.getValueAlongAxis(axis);
56
- });
57
- }
58
-
59
- getMaxValueAlongAxis(axis: AxisType = "z"): number {
60
- return Math.max(...this.getValuesAlongAxis(axis));
61
- }
62
-
63
- getMinValueAlongAxis(axis: AxisType = "z"): number {
64
- return Math.min(...this.getValuesAlongAxis(axis));
65
- }
66
-
67
- getExtremumValueAlongAxis(extremum: "max" | "min" = "max", axis: AxisType = "z"): number {
68
- return extremum === "max"
69
- ? this.getMaxValueAlongAxis(axis)
70
- : this.getMinValueAlongAxis(axis);
71
- }
72
-
73
- translateByVector(vector: Vector3DSchema): void {
74
- this.mapArrayInPlace((x) => {
75
- const coordinate = Coordinate.fromValueAndId(x);
76
- return coordinate.translateByVector(vector).value;
77
- });
78
- }
79
-
80
- getCenterPoint(): Vector3DSchema {
81
- const transposed = Utils.math.transpose(this.values) as Matrix3X3Schema;
82
- const center: Vector3DSchema = [0, 0, 0];
83
-
84
- for (let i = 0; i < 3; i++) {
85
- const axisCoords = transposed[i] as Coordinate3DSchema;
86
- const sum = axisCoords.reduce((a, b) => a + b, 0);
87
- center[i] = sum / this.values.length;
88
- }
89
-
90
- return center;
91
- }
92
- }
@@ -1,24 +0,0 @@
1
- import { ArrayWithIds, ValueWithId } from "@mat3ra/code";
2
- import { AtomicElementSchema } from "@mat3ra/esse/dist/js/types";
3
- import { uniq } from "lodash";
4
-
5
- export type AtomicElementValue = AtomicElementSchema["value"];
6
-
7
- export class Element extends ValueWithId<AtomicElementValue> {
8
- value: AtomicElementValue;
9
-
10
- constructor({ value, id }: AtomicElementSchema) {
11
- super({ id, value });
12
- this.value = value;
13
- }
14
-
15
- prettyPrint(): string {
16
- return this.value;
17
- }
18
- }
19
-
20
- export class Elements extends ArrayWithIds<AtomicElementValue> {
21
- getUnique(): string[] {
22
- return uniq(this.values.map((element) => element)) as string[];
23
- }
24
- }
@@ -1,20 +0,0 @@
1
- import s from "underscore.string";
2
-
3
- import { AtomicElementValue } from "./elements";
4
- import { AtomicLabelValue } from "./labels";
5
-
6
- export class ElementWithLabel {
7
- element: AtomicElementValue;
8
-
9
- label: AtomicLabelValue;
10
-
11
- constructor({ element, label }: { element: AtomicElementValue; label: AtomicLabelValue }) {
12
- this.element = element;
13
- this.label = label;
14
- }
15
-
16
- prettyPrint(): string {
17
- const elementWithLabel = `${this.element}${this.label}`;
18
- return s.sprintf("%-3s", elementWithLabel);
19
- }
20
- }
@@ -1,6 +0,0 @@
1
- import { ArrayWithIds } from "@mat3ra/code";
2
- import { AtomicLabelSchema } from "@mat3ra/esse/dist/js/types";
3
-
4
- export type AtomicLabelValue = AtomicLabelSchema["value"];
5
-
6
- export class Labels extends ArrayWithIds<AtomicLabelValue> {}
@@ -1,149 +0,0 @@
1
- import { RoundedVector3D } from "@mat3ra/code";
2
- import {
3
- Coordinate3DSchema,
4
- LatticeVectorsSchema as CellSchema,
5
- Matrix3X3Schema,
6
- Vector3DSchema,
7
- } from "@mat3ra/esse/dist/js/types";
8
- import { Utils } from "@mat3ra/utils";
9
-
10
- import constants from "../constants";
11
-
12
- const MATRIX = Utils.math.matrix;
13
- const MULT = Utils.math.multiply;
14
- const INV = Utils.math.inv;
15
- // @ts-ignore
16
- const MATRIX_MULT = (...args) => MULT(...args.map((x) => MATRIX(x))).toArray();
17
-
18
- export class Cell implements CellSchema {
19
- static RoundedVector3DClassReference = RoundedVector3D;
20
-
21
- static roundPrecision = 9;
22
-
23
- static tolerance = constants.tolerance.length; // in crystal coordinates
24
-
25
- static defaultConfig: CellSchema = {
26
- a: [1.0, 0, 0],
27
- b: [0, 1.0, 0],
28
- c: [0, 0, 1.0],
29
- };
30
-
31
- a: CellSchema["a"];
32
-
33
- b: CellSchema["b"];
34
-
35
- c: CellSchema["c"];
36
-
37
- alat = 1;
38
-
39
- units: CellSchema["units"] = "angstrom";
40
-
41
- constructor(config = Cell.defaultConfig) {
42
- const { a, b, c } = config;
43
- this.a = a;
44
- this.b = b;
45
- this.c = c;
46
- }
47
-
48
- static fromVectorsArray(vectors: Matrix3X3Schema): Cell {
49
- return new Cell({
50
- a: vectors[0],
51
- b: vectors[1],
52
- c: vectors[2],
53
- });
54
- }
55
-
56
- get _a() {
57
- return new Cell.RoundedVector3DClassReference(this.a);
58
- }
59
-
60
- get _b() {
61
- return new Cell.RoundedVector3DClassReference(this.b);
62
- }
63
-
64
- get _c() {
65
- return new Cell.RoundedVector3DClassReference(this.c);
66
- }
67
-
68
- get vectorArrays(): Matrix3X3Schema {
69
- return [this._a.value, this._b.value, this._c.value];
70
- }
71
-
72
- get vectorArraysRounded(): Matrix3X3Schema {
73
- return [this._a.valueRounded, this._b.valueRounded, this._c.valueRounded];
74
- }
75
-
76
- get volume(): number {
77
- return Utils.math.det(this.vectorArrays);
78
- }
79
-
80
- get volumeRounded(): number {
81
- return Utils.math.roundArrayOrNumber(this.volume, Cell.roundPrecision) as number;
82
- }
83
-
84
- clone(): Cell {
85
- return new Cell({ a: this.a, b: this.b, c: this.c });
86
- }
87
-
88
- cloneAndScaleByMatrix(matrix: Matrix3X3Schema) {
89
- const newCell = this.clone();
90
- newCell.scaleByMatrix(matrix);
91
- return newCell;
92
- }
93
-
94
- convertPointToCartesian(point: Coordinate3DSchema): Coordinate3DSchema {
95
- return MULT(point, this.vectorArrays) as unknown as Coordinate3DSchema;
96
- }
97
-
98
- convertPointToCrystal(point: Coordinate3DSchema): Coordinate3DSchema {
99
- return MULT(point, INV(this.vectorArrays)) as unknown as Coordinate3DSchema;
100
- }
101
-
102
- isPointInsideCellCartesian(point: Coordinate3DSchema): boolean {
103
- const { tolerance } = this.constructor as typeof Cell;
104
- return (
105
- this.convertPointToCrystal(point)
106
- .map((c: number) => Utils.math.isBetweenZeroInclusiveAndOne(c, tolerance))
107
- // @ts-ignore
108
- .reduce((a: boolean, b: boolean): boolean => a && b)
109
- );
110
- }
111
-
112
- // eslint-disable-next-line class-methods-use-this
113
- isPointInsideCellCrystal(point: Coordinate3DSchema): boolean {
114
- const { tolerance } = this.constructor as typeof Cell;
115
- return (
116
- point
117
- .map((c: number) => Utils.math.isBetweenZeroInclusiveAndOne(c, tolerance))
118
- // @ts-ignore
119
- .reduce((a: boolean, b: boolean): boolean => a && b)
120
- );
121
- }
122
-
123
- isPointInsideCell(point: Coordinate3DSchema, useCrystal = false): boolean {
124
- if (useCrystal) {
125
- return this.isPointInsideCellCrystal(point);
126
- }
127
- return this.isPointInsideCellCartesian(point);
128
- }
129
-
130
- getMostCollinearVectorIndex(testVector: Vector3DSchema): number {
131
- const angles = this.vectorArrays.map((v) => Utils.math.angleUpTo90(v, testVector, "deg"));
132
- return angles.findIndex((el: number) => el === Utils.math.min(angles));
133
- }
134
-
135
- scaleByMatrix(matrix: number[][]) {
136
- // @ts-ignore - mathjs v12 multiply return type is broader than runtime
137
- [this.a, this.b, this.c] = MATRIX_MULT(matrix, this.vectorArrays);
138
- }
139
-
140
- toJSON(): CellSchema {
141
- return {
142
- a: this._a.toJSON(),
143
- b: this._b.toJSON(),
144
- c: this._c.toJSON(),
145
- alat: this.alat,
146
- units: this.units,
147
- };
148
- }
149
- }
@@ -1,86 +0,0 @@
1
- import { LatticeSchema, LatticeTypeEnum, Matrix3X3Schema } from "@mat3ra/esse/dist/js/types";
2
-
3
- /**
4
- * Routines for calculating conventional cell vectors from primitive cell Bravais parameters.
5
- * Following Setyawan, W., & Curtarolo, S. (2010). doi:10.1016/j.commatsci.2010.05.010
6
- */
7
-
8
- const unitMatrix: Matrix3X3Schema = [
9
- [1, 0, 0],
10
- [0, 1, 0],
11
- [0, 0, 1],
12
- ];
13
-
14
- // (Conventional cellVectors) = (Primitive cellVectors) * (PRIMITIVE_TO_CONVENTIONAL_CELL_MULTIPLIER matrix)
15
- export const PRIMITIVE_TO_CONVENTIONAL_CELL_MULTIPLIERS: Record<string, Matrix3X3Schema> = {
16
- // PRIMITIVE => CONVENTIONAL
17
- CUB: unitMatrix,
18
- FCC: [
19
- [-1, 1, 1],
20
- [1, -1, 1],
21
- [1, 1, -1],
22
- ],
23
- BCC: [
24
- [0, 1, 1],
25
- [1, 0, 1],
26
- [1, 1, 0],
27
- ],
28
- TET: unitMatrix,
29
- BCT: [
30
- [0, 1, 1],
31
- [1, 0, 1],
32
- [1, 1, 0],
33
- ],
34
- ORC: unitMatrix,
35
- ORCF: [
36
- [-1, 1, 1],
37
- [1, -1, 1],
38
- [1, 1, -1],
39
- ],
40
- ORCI: [
41
- [0, 1, 1],
42
- [1, 0, 1],
43
- [1, 1, 0],
44
- ],
45
- ORCC: [
46
- [1, -1, 0],
47
- [1, 1, 0],
48
- [0, 0, 1],
49
- ],
50
- HEX: unitMatrix,
51
- RHL: unitMatrix,
52
- MCL: unitMatrix,
53
- MCLC: [
54
- [1, -1, 0],
55
- [1, 1, 0],
56
- [0, 0, 1],
57
- ],
58
- TRI: unitMatrix,
59
- };
60
-
61
- export const PRIMITIVE_TO_CONVENTIONAL_CELL_LATTICE_TYPES: {
62
- [key in LatticeTypeEnum]: LatticeTypeEnum;
63
- } = {
64
- // PRIMITIVE => CONVENTIONAL
65
- CUB: "CUB",
66
- FCC: "CUB",
67
- BCC: "CUB",
68
- TET: "TET",
69
- BCT: "TET",
70
- ORC: "ORC",
71
- ORCF: "ORC",
72
- ORCI: "ORC",
73
- ORCC: "ORC",
74
- HEX: "HEX",
75
- RHL: "RHL",
76
- MCL: "MCL",
77
- MCLC: "MCL",
78
- TRI: "TRI",
79
- };
80
-
81
- export function isConventionalCellSameAsPrimitiveForLatticeType(
82
- latticeType: LatticeSchema["type"],
83
- ): boolean {
84
- const multiplier = PRIMITIVE_TO_CONVENTIONAL_CELL_MULTIPLIERS[latticeType || "TRI"];
85
- return multiplier === unitMatrix;
86
- }
@@ -1,166 +0,0 @@
1
- import { LatticeSchema, Matrix3X3Schema } from "@mat3ra/esse/dist/js/types";
2
- import { Utils } from "@mat3ra/utils";
3
-
4
- /**
5
- * Routines for calculating primitive cell vectors from conventional cell Bravais parameters.
6
- * Following Setyawan, W., & Curtarolo, S. (2010). doi:10.1016/j.commatsci.2010.05.010
7
- */
8
- const PRIMITIVE_CELLS = {
9
- CUB: ({ a }: LatticeSchema): Matrix3X3Schema => {
10
- return [
11
- [a, 0, 0],
12
- [0, a, 0],
13
- [0, 0, a],
14
- ];
15
- },
16
-
17
- FCC: ({ a }: LatticeSchema): Matrix3X3Schema => {
18
- return [
19
- [0.0, a / 2, a / 2],
20
- [a / 2, 0.0, a / 2],
21
- [a / 2, a / 2, 0.0],
22
- ];
23
- },
24
-
25
- BCC: ({ a }: LatticeSchema): Matrix3X3Schema => {
26
- return [
27
- [-a / 2, a / 2, a / 2],
28
- [a / 2, -a / 2, a / 2],
29
- [a / 2, a / 2, -a / 2],
30
- ];
31
- },
32
-
33
- TET: ({ a, c }: LatticeSchema): Matrix3X3Schema => {
34
- return [
35
- [a, 0, 0],
36
- [0, a, 0],
37
- [0, 0, c],
38
- ];
39
- },
40
-
41
- BCT: ({ a, c }: LatticeSchema): Matrix3X3Schema => {
42
- return [
43
- [-a / 2, a / 2, c / 2],
44
- [a / 2, -a / 2, c / 2],
45
- [a / 2, a / 2, -c / 2],
46
- ];
47
- },
48
-
49
- ORC: ({ a, b, c }: LatticeSchema): Matrix3X3Schema => {
50
- return [
51
- [a, 0, 0],
52
- [0, b, 0],
53
- [0, 0, c],
54
- ];
55
- },
56
-
57
- ORCF: ({ a, b, c }: LatticeSchema): Matrix3X3Schema => {
58
- return [
59
- [0, b / 2, c / 2],
60
- [a / 2, 0, c / 2],
61
- [a / 2, b / 2, 0],
62
- ];
63
- },
64
-
65
- ORCI: ({ a, b, c }: LatticeSchema): Matrix3X3Schema => {
66
- return [
67
- [-a / 2, b / 2, c / 2],
68
- [a / 2, -b / 2, c / 2],
69
- [a / 2, b / 2, -c / 2],
70
- ];
71
- },
72
-
73
- ORCC: ({ a, b, c }: LatticeSchema): Matrix3X3Schema => {
74
- return [
75
- [a / 2, b / 2, 0],
76
- [-a / 2, b / 2, 0],
77
- [0, 0, c],
78
- ];
79
- },
80
-
81
- HEX: ({ a, c }: LatticeSchema): Matrix3X3Schema => {
82
- return [
83
- [a / 2, (-a * Number(Utils.math.sqrt(3))) / 2, 0],
84
- [a / 2, (a * Number(Utils.math.sqrt(3))) / 2, 0],
85
- [0, 0, c],
86
- ];
87
- },
88
-
89
- RHL: ({ a, alpha }: LatticeSchema): Matrix3X3Schema => {
90
- const cosAlpha = Number(Utils.math.cos((alpha / 180) * Number(Utils.math.PI)));
91
- const cosHalfAlpha = Number(Utils.math.sqrt((1 / 2) * (1 + cosAlpha)));
92
- const sinHalfAlpha = Number(Utils.math.sqrt((1 / 2) * (1 - cosAlpha)));
93
- return [
94
- [a * cosHalfAlpha, -a * sinHalfAlpha, 0.0],
95
- [a * cosHalfAlpha, a * sinHalfAlpha, 0.0],
96
- [
97
- (a * cosAlpha) / cosHalfAlpha,
98
- 0.0,
99
- a *
100
- Number(
101
- Utils.math.sqrt(1 - (cosAlpha * cosAlpha) / (cosHalfAlpha * cosHalfAlpha)),
102
- ),
103
- ],
104
- ];
105
- },
106
-
107
- MCL: ({ a, b, c, alpha }: LatticeSchema): Matrix3X3Schema => {
108
- const cosAlpha = Number(Utils.math.cos((alpha / 180) * Number(Utils.math.PI)));
109
- return [
110
- [a, 0, 0],
111
- [0, b, 0],
112
- [0, c * cosAlpha, c * Number(Utils.math.sqrt(1 - cosAlpha * cosAlpha))],
113
- ];
114
- },
115
-
116
- MCLC: ({ a, b, c, alpha }: LatticeSchema): Matrix3X3Schema => {
117
- const cosAlpha = Number(Utils.math.cos((alpha / 180) * Number(Utils.math.PI)));
118
- return [
119
- [a / 2, b / 2, 0],
120
- [-a / 2, b / 2, 0],
121
- [0, c * cosAlpha, c * Number(Utils.math.sqrt(1 - cosAlpha * cosAlpha))],
122
- ];
123
- },
124
-
125
- // Algorithm from http://pymatgen.org/_modules/pymatgen/core/lattice.html (from_params)
126
- TRI: ({ a, b, c, alpha, beta, gamma }: LatticeSchema): Matrix3X3Schema => {
127
- // convert angles to Radians
128
- // eslint-disable-next-line no-param-reassign
129
- [alpha, beta, gamma] = [alpha, beta, gamma].map((x) =>
130
- Number(Utils.math.unit(x, "degree").to("rad").value),
131
- );
132
-
133
- const [cosAlpha, cosBeta, cosGamma] = [alpha, beta, gamma].map((x) =>
134
- Number(Utils.math.cos(x)),
135
- );
136
- const [sinAlpha, sinBeta] = [alpha, beta].map((x) => Number(Utils.math.sin(x)));
137
- let acosArg = (cosAlpha * cosBeta - cosGamma) / (sinAlpha * sinBeta);
138
- if (acosArg < -1) {
139
- acosArg = -1;
140
- } else if (acosArg > 1) {
141
- acosArg = 1;
142
- }
143
- const gammaStar = Number(Utils.math.acos(acosArg));
144
- const cosGammaStar = Number(Utils.math.cos(gammaStar));
145
- const sinGammaStar = Number(Utils.math.sin(gammaStar));
146
-
147
- return [
148
- [a * sinBeta, 0.0, a * cosBeta],
149
- [-b * sinAlpha * cosGammaStar, b * sinAlpha * sinGammaStar, b * cosAlpha],
150
- [0.0, 0.0, c],
151
- ];
152
- },
153
- };
154
-
155
- /**
156
- * Returns lattice vectors for a primitive cell for a lattice.
157
- * @param latticeConfig - Lattice config.
158
- * @return Cell.vectorsAsArray
159
- */
160
- export function getPrimitiveLatticeVectorsFromConfig(
161
- latticeConfig: LatticeSchema,
162
- ): Matrix3X3Schema {
163
- const primitiveCellGenerator = PRIMITIVE_CELLS[latticeConfig.type || "TRI"];
164
- const [vectorA, vectorB, vectorC] = primitiveCellGenerator(latticeConfig);
165
- return [vectorA, vectorB, vectorC];
166
- }
@@ -1,18 +0,0 @@
1
- /**
2
- * Constants for molecule handling and precision.
3
- * Source of truth: /constants.json at repository root
4
- *
5
- * These values are duplicated here for TypeScript compilation.
6
- * When updating these, also update constants.json.
7
- */
8
-
9
- export const defaultNonPeriodicMinimumLatticeSize = 3.0;
10
- export const diatomicLatticePaddingFactor = 3.0;
11
- export const molecularLatticePaddingFactor = 2.0;
12
-
13
- export const PRECISION_MAP = {
14
- coordinatesCrystal: 9,
15
- coordinatesCartesian: 6,
16
- latticeLengths: 6,
17
- latticeAngles: 4,
18
- };
@@ -1,4 +0,0 @@
1
- // TODO: adjust the imports and remove the need for re-exporting
2
- export * from "@mat3ra/code/dist/js/constants";
3
- // eslint-disable-next-line no-restricted-exports
4
- export { default } from "@mat3ra/code/dist/js/constants";