@mat3ra/esse 2024.4.8-0 → 2024.4.8-2

package/dist/py/core/reference/__init__.py

@@ -1,260 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from enum import Enum
-from typing import Any, Dict, List, Optional, Union
-
-from pydantic import BaseModel, Field, RootModel, constr
-
-
-class Type(Enum):
-    exabyte = "exabyte"
-
-
-class EntityReferenceSchema(BaseModel):
-    field_id: Optional[str] = Field(None, alias="_id")
-    """
-    entity identity
-    """
-    cls: Optional[str] = None
-    """
-    entity class
-    """
-    slug: Optional[str] = None
-    """
-    entity slug
-    """
-
-
-class InfoForCharacteristicObtainedByExabyteCalculation(BaseModel):
-    type: Optional[Type] = None
-    title: constr(max_length=300)
-    """
-    Human-readable title of the job
-    """
-    field_id: str = Field(..., alias="_id")
-    """
-    job identifier
-    """
-    owner: EntityReferenceSchema = Field(..., title="entity reference schema")
-
-
-class Type71(Enum):
-    experiment = "experiment"
-
-
-class ExperimentAuthorSchema(BaseModel):
-    first: str
-    middle: Optional[str] = None
-    last: str
-    affiliation: Optional[str] = None
-
-
-class ScalarItem(BaseModel):
-    value: Optional[str] = None
-
-
-class ConditionSchema(BaseModel):
-    units: Optional[str] = None
-    """
-    condition unit
-    """
-    scalar: Optional[List[ScalarItem]] = None
-    """
-    array of condition values
-    """
-    name: str
-    """
-    human-readable name of the condition
-    """
-
-
-class LocationSchema(BaseModel):
-    latitude: float
-    """
-    location latitude
-    """
-    longitude: float
-    """
-    location longitude
-    """
-
-
-class Type72(Enum):
-    literature = "literature"
-
-
-class PagesSchema(BaseModel):
-    start: str
-    end: Optional[str] = None
-
-
-class LiteratureReferenceSchema(BaseModel):
-    type: Optional[Type72] = None
-    doi: Optional[str] = None
-    """
-    Digital Object Identifier of the reference.
-    """
-    isbn: Optional[str] = None
-    """
-    International Standard Book Number of the reference.
-    """
-    issn: Optional[str] = None
-    """
-    International Standard Serial Number of the reference.
-    """
-    url: Optional[str] = None
-    """
-    Internet address of the reference.
-    """
-    title: Optional[str] = None
-    """
-    Title of the work.
-    """
-    publisher: Optional[str] = None
-    """
-    Publisher of the work.
-    """
-    journal: Optional[str] = None
-    """
-    Journal in which the work appeared.
-    """
-    volume: Optional[str] = None
-    """
-    Volume of the series in which the work appeared.
-    """
-    year: Optional[str] = None
-    """
-    Year in which the reference was published.
-    """
-    issue: Optional[str] = None
-    """
-    Issue of the collection in which the work appeared.
-    """
-    pages: Optional[PagesSchema] = Field(None, title="pages schema")
-    """
-    Start and end pages of the work.
-    """
-    authors: Optional[List[ExperimentAuthorSchema]] = None
-    """
-    List of authors of the work.
-    """
-    editors: Optional[List[ExperimentAuthorSchema]] = None
-    """
-    List of editors of the work.
-    """
-    reference: Optional[List[Dict[str, Any]]] = None
-    """
-    References cited by the work. Reference objects can nest as deeply as needed. This is useful, for example, when tracking the history of a value referenced in a scholarly article; the top level reference would contain information about where the data was accessed while the nested reference would contain information about where it was originally published.
-    """
-
-
-class InfoForCharacteristicObtainedByExperiment(BaseModel):
-    type: Optional[Type71] = None
-    authors: List[ExperimentAuthorSchema]
-    """
-    experiment authors
-    """
-    title: str
-    """
-    experiment title
-    """
-    method: str
-    """
-    method used in experiment
-    """
-    conditions: List[ConditionSchema]
-    location: Optional[LocationSchema] = Field(None, title="location schema")
-    timestamp: float
-    """
-    epoch time.
-    """
-    note: Optional[str] = None
-    """
-    Note about experiment
-    """
-    references: Optional[List[LiteratureReferenceSchema]] = None
-    """
-    references to literature articles
-    """
-
-
-class LiteratureReferenceSchema15(BaseModel):
-    type: Optional[Type72] = None
-    doi: Optional[str] = None
-    """
-    Digital Object Identifier of the reference.
-    """
-    isbn: Optional[str] = None
-    """
-    International Standard Book Number of the reference.
-    """
-    issn: Optional[str] = None
-    """
-    International Standard Serial Number of the reference.
-    """
-    url: Optional[str] = None
-    """
-    Internet address of the reference.
-    """
-    title: Optional[str] = None
-    """
-    Title of the work.
-    """
-    publisher: Optional[str] = None
-    """
-    Publisher of the work.
-    """
-    journal: Optional[str] = None
-    """
-    Journal in which the work appeared.
-    """
-    volume: Optional[str] = None
-    """
-    Volume of the series in which the work appeared.
-    """
-    year: Optional[str] = None
-    """
-    Year in which the reference was published.
-    """
-    issue: Optional[str] = None
-    """
-    Issue of the collection in which the work appeared.
-    """
-    pages: Optional[PagesSchema] = Field(None, title="pages schema")
-    """
-    Start and end pages of the work.
-    """
-    authors: Optional[List[ExperimentAuthorSchema]] = None
-    """
-    List of authors of the work.
-    """
-    editors: Optional[List[ExperimentAuthorSchema]] = None
-    """
-    List of editors of the work.
-    """
-    reference: Optional[List[Dict[str, Any]]] = None
-    """
-    References cited by the work. Reference objects can nest as deeply as needed. This is useful, for example, when tracking the history of a value referenced in a scholarly article; the top level reference would contain information about where the data was accessed while the nested reference would contain information about where it was originally published.
-    """
-
-
-class ESSE(
-    RootModel[
-        Union[
-            InfoForCharacteristicObtainedByExabyteCalculation,
-            InfoForCharacteristicObtainedByExperiment,
-            LiteratureReferenceSchema15,
-        ]
-    ]
-):
-    root: Union[
-        InfoForCharacteristicObtainedByExabyteCalculation,
-        InfoForCharacteristicObtainedByExperiment,
-        LiteratureReferenceSchema15,
-    ] = Field(
-        ..., title="reference schema (using `anyOf` instead of `oneOf` below b/c current reference schemas overlap)"
-    )

package/dist/py/core/reference/exabyte.py

@@ -1,24 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference/exabyte.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from typing import Optional
-
-from pydantic import BaseModel
-
-
-class ESSE(BaseModel):
-    materialId: Optional[str] = None
-    """
-    Material's identity. Used for protoProperties.
-    """
-    jobId: Optional[str] = None
-    """
-    Job's identity
-    """
-    unitId: Optional[str] = None
-    """
-    Id of the unit that extracted the result
-    """

package/dist/py/core/reference/experiment/__init__.py

@@ -1,150 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference/experiment.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from enum import Enum
-from typing import Any, Dict, List, Optional
-
-from pydantic import BaseModel, Field
-
-
-class Type(Enum):
-    experiment = "experiment"
-
-
-class ExperimentAuthorSchema(BaseModel):
-    first: str
-    middle: Optional[str] = None
-    last: str
-    affiliation: Optional[str] = None
-
-
-class ScalarItem(BaseModel):
-    value: Optional[str] = None
-
-
-class ConditionSchema(BaseModel):
-    units: Optional[str] = None
-    """
-    condition unit
-    """
-    scalar: Optional[List[ScalarItem]] = None
-    """
-    array of condition values
-    """
-    name: str
-    """
-    human-readable name of the condition
-    """
-
-
-class LocationSchema(BaseModel):
-    latitude: float
-    """
-    location latitude
-    """
-    longitude: float
-    """
-    location longitude
-    """
-
-
-class Type23(Enum):
-    literature = "literature"
-
-
-class PagesSchema(BaseModel):
-    start: str
-    end: Optional[str] = None
-
-
-class LiteratureReferenceSchema(BaseModel):
-    type: Optional[Type23] = None
-    doi: Optional[str] = None
-    """
-    Digital Object Identifier of the reference.
-    """
-    isbn: Optional[str] = None
-    """
-    International Standard Book Number of the reference.
-    """
-    issn: Optional[str] = None
-    """
-    International Standard Serial Number of the reference.
-    """
-    url: Optional[str] = None
-    """
-    Internet address of the reference.
-    """
-    title: Optional[str] = None
-    """
-    Title of the work.
-    """
-    publisher: Optional[str] = None
-    """
-    Publisher of the work.
-    """
-    journal: Optional[str] = None
-    """
-    Journal in which the work appeared.
-    """
-    volume: Optional[str] = None
-    """
-    Volume of the series in which the work appeared.
-    """
-    year: Optional[str] = None
-    """
-    Year in which the reference was published.
-    """
-    issue: Optional[str] = None
-    """
-    Issue of the collection in which the work appeared.
-    """
-    pages: Optional[PagesSchema] = Field(None, title="pages schema")
-    """
-    Start and end pages of the work.
-    """
-    authors: Optional[List[ExperimentAuthorSchema]] = None
-    """
-    List of authors of the work.
-    """
-    editors: Optional[List[ExperimentAuthorSchema]] = None
-    """
-    List of editors of the work.
-    """
-    reference: Optional[List[Dict[str, Any]]] = None
-    """
-    References cited by the work. Reference objects can nest as deeply as needed. This is useful, for example, when tracking the history of a value referenced in a scholarly article; the top level reference would contain information about where the data was accessed while the nested reference would contain information about where it was originally published.
-    """
-
-
-class InfoForCharacteristicObtainedByExperiment(BaseModel):
-    type: Optional[Type] = None
-    authors: List[ExperimentAuthorSchema]
-    """
-    experiment authors
-    """
-    title: str
-    """
-    experiment title
-    """
-    method: str
-    """
-    method used in experiment
-    """
-    conditions: List[ConditionSchema]
-    location: Optional[LocationSchema] = Field(None, title="location schema")
-    timestamp: float
-    """
-    epoch time.
-    """
-    note: Optional[str] = None
-    """
-    Note about experiment
-    """
-    references: Optional[List[LiteratureReferenceSchema]] = None
-    """
-    references to literature articles
-    """

package/dist/py/core/reference/experiment/condition.py

@@ -1,28 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference/experiment/condition.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from typing import List, Optional
-
-from pydantic import BaseModel
-
-
-class ScalarItem(BaseModel):
-    value: Optional[str] = None
-
-
-class ConditionSchema(BaseModel):
-    units: Optional[str] = None
-    """
-    condition unit
-    """
-    scalar: Optional[List[ScalarItem]] = None
-    """
-    array of condition values
-    """
-    name: str
-    """
-    human-readable name of the condition
-    """

package/dist/py/core/reference/experiment/location.py

@@ -1,18 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference/experiment/location.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from pydantic import BaseModel
-
-
-class LocationSchema(BaseModel):
-    latitude: float
-    """
-    location latitude
-    """
-    longitude: float
-    """
-    location longitude
-    """

package/dist/py/core/reference/literature/__init__.py

@@ -1,86 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference/literature.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from enum import Enum
-from typing import Any, Dict, List, Optional
-
-from pydantic import BaseModel, Field
-
-
-class Type(Enum):
-    literature = "literature"
-
-
-class PagesSchema(BaseModel):
-    start: str
-    end: Optional[str] = None
-
-
-class ExperimentAuthorSchema(BaseModel):
-    first: str
-    middle: Optional[str] = None
-    last: str
-    affiliation: Optional[str] = None
-
-
-class LiteratureReferenceSchema(BaseModel):
-    type: Optional[Type] = None
-    doi: Optional[str] = None
-    """
-    Digital Object Identifier of the reference.
-    """
-    isbn: Optional[str] = None
-    """
-    International Standard Book Number of the reference.
-    """
-    issn: Optional[str] = None
-    """
-    International Standard Serial Number of the reference.
-    """
-    url: Optional[str] = None
-    """
-    Internet address of the reference.
-    """
-    title: Optional[str] = None
-    """
-    Title of the work.
-    """
-    publisher: Optional[str] = None
-    """
-    Publisher of the work.
-    """
-    journal: Optional[str] = None
-    """
-    Journal in which the work appeared.
-    """
-    volume: Optional[str] = None
-    """
-    Volume of the series in which the work appeared.
-    """
-    year: Optional[str] = None
-    """
-    Year in which the reference was published.
-    """
-    issue: Optional[str] = None
-    """
-    Issue of the collection in which the work appeared.
-    """
-    pages: Optional[PagesSchema] = Field(None, title="pages schema")
-    """
-    Start and end pages of the work.
-    """
-    authors: Optional[List[ExperimentAuthorSchema]] = None
-    """
-    List of authors of the work.
-    """
-    editors: Optional[List[ExperimentAuthorSchema]] = None
-    """
-    List of editors of the work.
-    """
-    reference: Optional[List[Dict[str, Any]]] = None
-    """
-    References cited by the work. Reference objects can nest as deeply as needed. This is useful, for example, when tracking the history of a value referenced in a scholarly article; the top level reference would contain information about where the data was accessed while the nested reference would contain information about where it was originally published.
-    """

package/dist/py/core/reference/literature/name.py

@@ -1,16 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference/literature/name.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from typing import Optional
-
-from pydantic import BaseModel
-
-
-class ExperimentAuthorSchema(BaseModel):
-    first: str
-    middle: Optional[str] = None
-    last: str
-    affiliation: Optional[str] = None

package/dist/py/core/reference/literature/pages.py

@@ -1,14 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference/literature/pages.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from typing import Optional
-
-from pydantic import BaseModel
-
-
-class PagesSchema(BaseModel):
-    start: str
-    end: Optional[str] = None

package/dist/py/core/reference/modeling/__init__.py

@@ -1,49 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference/modeling.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from enum import Enum
-from typing import Optional
-
-from pydantic import BaseModel, Field, RootModel, constr
-
-
-class Type(Enum):
-    exabyte = "exabyte"
-
-
-class EntityReferenceSchema(BaseModel):
-    field_id: Optional[str] = Field(None, alias="_id")
-    """
-    entity identity
-    """
-    cls: Optional[str] = None
-    """
-    entity class
-    """
-    slug: Optional[str] = None
-    """
-    entity slug
-    """
-
-
-class InfoForCharacteristicObtainedByExabyteCalculation(BaseModel):
-    type: Optional[Type] = None
-    title: constr(max_length=300)
-    """
-    Human-readable title of the job
-    """
-    field_id: str = Field(..., alias="_id")
-    """
-    job identifier
-    """
-    owner: EntityReferenceSchema = Field(..., title="entity reference schema")
-
-
-class ESSE(RootModel[InfoForCharacteristicObtainedByExabyteCalculation]):
-    root: InfoForCharacteristicObtainedByExabyteCalculation = Field(
-        ...,
-        title="info for property obtained by modeling, only supports exabyte-originated data atm, but easily extendable",
-    )

package/dist/py/core/reference/modeling/exabyte.py

@@ -1,42 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  core/reference/modeling/exabyte.json
-#   version:   0.25.5
-
-from __future__ import annotations
-
-from enum import Enum
-from typing import Optional
-
-from pydantic import BaseModel, Field, constr
-
-
-class Type(Enum):
-    exabyte = "exabyte"
-
-
-class EntityReferenceSchema(BaseModel):
-    field_id: Optional[str] = Field(None, alias="_id")
-    """
-    entity identity
-    """
-    cls: Optional[str] = None
-    """
-    entity class
-    """
-    slug: Optional[str] = None
-    """
-    entity slug
-    """
-
-
-class InfoForCharacteristicObtainedByExabyteCalculation(BaseModel):
-    type: Optional[Type] = None
-    title: constr(max_length=300)
-    """
-    Human-readable title of the job
-    """
-    field_id: str = Field(..., alias="_id")
-    """
-    job identifier
-    """
-    owner: EntityReferenceSchema = Field(..., title="entity reference schema")

package/dist/py/core/reusable/__init__.py

@@ -1,3 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  schema
-#   version:   0.25.5

package/dist/py/core/reusable/atomic_data/__init__.py

@@ -1,3 +0,0 @@
-# generated by datamodel-codegen:
-#   filename:  schema
-#   version:   0.25.5