@mat3ra/esse 2024.12.19-0 → 2025.1.27-0

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Files changed (79) hide show
  1. package/dist/js/schema/core/reference/modeling/exabyte.json +3 -0
  2. package/dist/js/schema/core/reference/modeling.json +3 -0
  3. package/dist/js/schema/core/reference.json +3 -0
  4. package/dist/js/schema/in_memory_entity/base.json +0 -41
  5. package/dist/js/schema/in_memory_entity/defaultable.json +0 -41
  6. package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +74 -0
  7. package/dist/js/schema/in_memory_entity/named.json +0 -41
  8. package/dist/js/schema/in_memory_entity/named_defaultable.json +0 -41
  9. package/dist/js/schema/in_memory_entity/named_defaultable_has_metadata.json +0 -41
  10. package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json +0 -41
  11. package/dist/js/schema/job/base.json +9 -41
  12. package/dist/js/schema/job.json +9 -1025
  13. package/dist/js/schema/material/consistency_check.json +40 -0
  14. package/dist/js/schema/material.json +17 -16
  15. package/dist/js/schema/project.json +0 -41
  16. package/dist/js/schema/property/base.json +0 -41
  17. package/dist/js/schema/property/meta.json +0 -41
  18. package/dist/js/schema/property/raw.json +0 -41
  19. package/dist/js/schema/software/application.json +0 -41
  20. package/dist/js/schema/software/executable.json +0 -41
  21. package/dist/js/schema/software/flavor.json +0 -41
  22. package/dist/js/schema/software/template.json +0 -41
  23. package/dist/js/schema/software_directory/ml/unit/execution/evaluate/cross_validate.json +0 -164
  24. package/dist/js/schema/software_directory/ml/unit/execution/initialize.json +0 -164
  25. package/dist/js/schema/software_directory/ml/unit/execution/score.json +0 -164
  26. package/dist/js/schema/software_directory/ml/unit/execution/train.json +0 -164
  27. package/dist/js/schema/software_directory/ml/unit/execution.json +0 -656
  28. package/dist/js/schema/software_directory/ml/unit/processing/data_transformation/manipulation.json +0 -41
  29. package/dist/js/schema/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.json +0 -41
  30. package/dist/js/schema/software_directory/ml/unit/processing/data_transformation.json +0 -41
  31. package/dist/js/schema/software_directory/ml/unit/processing/feature_selection/filter_based.json +0 -41
  32. package/dist/js/schema/software_directory/ml/unit/processing/feature_selection.json +0 -41
  33. package/dist/js/schema/software_directory/ml/unit/processing.json +0 -82
  34. package/dist/js/schema/software_directory/modeling/deepmd.json +0 -41
  35. package/dist/js/schema/software_directory/modeling/nwchem.json +0 -41
  36. package/dist/js/schema/software_directory/modeling/unit/execution.json +0 -164
  37. package/dist/js/schema/software_directory/modeling/vasp.json +0 -41
  38. package/dist/js/schema/software_directory/scripting/jupyter_lab.json +0 -41
  39. package/dist/js/schema/software_directory/scripting/python.json +0 -41
  40. package/dist/js/schema/software_directory/scripting/shell.json +0 -41
  41. package/dist/js/schema/software_directory/scripting/unit/execution.json +0 -164
  42. package/dist/js/schema/system/_material.json +3 -0
  43. package/dist/js/schema/system/_parent_job.json +3 -0
  44. package/dist/js/schema/system/_project.json +3 -0
  45. package/dist/js/schema/system/consistency_check.json +1 -5
  46. package/dist/js/schema/system/creator.json +3 -0
  47. package/dist/js/schema/system/creator_account.json +3 -0
  48. package/dist/js/schema/system/description.json +1 -1
  49. package/dist/js/schema/system/entity_reference.json +3 -0
  50. package/dist/js/schema/system/has_consistency_check.json +46 -0
  51. package/dist/js/schema/system/in_set.json +3 -0
  52. package/dist/js/schema/system/job_extended.json +6 -0
  53. package/dist/js/schema/system/owner.json +3 -0
  54. package/dist/js/schema/workflow/base.json +0 -41
  55. package/dist/js/schema/workflow/subworkflow/unit.json +0 -410
  56. package/dist/js/schema/workflow/subworkflow.json +0 -451
  57. package/dist/js/schema/workflow/unit/assertion.json +0 -41
  58. package/dist/js/schema/workflow/unit/assignment.json +0 -41
  59. package/dist/js/schema/workflow/unit/base.json +0 -41
  60. package/dist/js/schema/workflow/unit/condition.json +0 -41
  61. package/dist/js/schema/workflow/unit/execution.json +0 -164
  62. package/dist/js/schema/workflow/unit/io.json +0 -41
  63. package/dist/js/schema/workflow/unit/map.json +0 -41
  64. package/dist/js/schema/workflow/unit/processing.json +0 -41
  65. package/dist/js/schema/workflow/unit/reduce.json +0 -41
  66. package/dist/js/schema/workflow/unit/subworkflow.json +0 -41
  67. package/dist/js/schema/workflow/unit.json +0 -492
  68. package/dist/js/schema/workflow.json +0 -984
  69. package/dist/js/schemas.json +1 -1
  70. package/dist/js/types.d.ts +142 -3002
  71. package/package.json +3 -3
  72. package/schema/in_memory_entity/base.json +0 -6
  73. package/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +13 -0
  74. package/schema/material/consistency_check.json +22 -0
  75. package/schema/material.json +6 -0
  76. package/schema/system/consistency_check.json +1 -5
  77. package/schema/system/description.json +1 -1
  78. package/schema/system/entity_reference.json +2 -1
  79. package/schema/system/has_consistency_check.json +16 -0
package/dist/js/schema/software_directory/ml/unit/execution/evaluate/cross_validate.json CHANGED
@@ -72,47 +72,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
@@ -163,47 +122,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
@@ -386,47 +304,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
@@ -611,47 +488,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
package/dist/js/schema/software_directory/ml/unit/execution/initialize.json CHANGED
@@ -76,47 +76,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
@@ -167,47 +126,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
@@ -390,47 +308,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
@@ -615,47 +492,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
package/dist/js/schema/software_directory/ml/unit/execution/score.json CHANGED
@@ -62,47 +62,6 @@
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
@@ -153,47 +112,6 @@
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  "systemName": {
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
187
- ],
188
- "description": "Severity level of the problem, which is used in UI to differentiate."
189
- },
190
- "message": {
191
- "type": "string",
192
- "description": "Message generated by the consistency check describing the problem."
193
- }
194
- }
195
- }
196
- },
197
115
  "schemaVersion": {
198
116
  "description": "entity's schema version. Used to distinct between different schemas.",
199
117
  "type": "string",
@@ -376,47 +294,6 @@
376
294
  "systemName": {
377
295
  "type": "string"
378
296
  },
379
- "consistencyChecks": {
380
- "type": "array",
381
- "items": {
382
- "$schema": "http://json-schema.org/draft-07/schema#",
383
- "title": "consistency check",
384
- "type": "object",
385
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
386
- "required": [
387
- "key",
388
- "name",
389
- "severity",
390
- "message"
391
- ],
392
- "properties": {
393
- "key": {
394
- "type": "string",
395
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
396
- },
397
- "name": {
398
- "enum": [
399
- "default",
400
- "atomsTooClose",
401
- "atomsOverlap"
402
- ],
403
- "description": "Name of the consistency check that is performed, which is listed in an enum."
404
- },
405
- "severity": {
406
- "enum": [
407
- "info",
408
- "warning",
409
- "error"
410
- ],
411
- "description": "Severity level of the problem, which is used in UI to differentiate."
412
- },
413
- "message": {
414
- "type": "string",
415
- "description": "Message generated by the consistency check describing the problem."
416
- }
417
- }
418
- }
419
- },
420
297
  "schemaVersion": {
421
298
  "description": "entity's schema version. Used to distinct between different schemas.",
422
299
  "type": "string",
@@ -601,47 +478,6 @@
601
478
  "systemName": {
602
479
  "type": "string"
603
480
  },
604
- "consistencyChecks": {
605
- "type": "array",
606
- "items": {
607
- "$schema": "http://json-schema.org/draft-07/schema#",
608
- "title": "consistency check",
609
- "type": "object",
610
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
611
- "required": [
612
- "key",
613
- "name",
614
- "severity",
615
- "message"
616
- ],
617
- "properties": {
618
- "key": {
619
- "type": "string",
620
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
621
- },
622
- "name": {
623
- "enum": [
624
- "default",
625
- "atomsTooClose",
626
- "atomsOverlap"
627
- ],
628
- "description": "Name of the consistency check that is performed, which is listed in an enum."
629
- },
630
- "severity": {
631
- "enum": [
632
- "info",
633
- "warning",
634
- "error"
635
- ],
636
- "description": "Severity level of the problem, which is used in UI to differentiate."
637
- },
638
- "message": {
639
- "type": "string",
640
- "description": "Message generated by the consistency check describing the problem."
641
- }
642
- }
643
- }
644
- },
645
481
  "schemaVersion": {
646
482
  "description": "entity's schema version. Used to distinct between different schemas.",
647
483
  "type": "string",