@mat3ra/esse 2024.12.19-0 → 2025.1.27-0

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Files changed (79) hide show
  1. package/dist/js/schema/core/reference/modeling/exabyte.json +3 -0
  2. package/dist/js/schema/core/reference/modeling.json +3 -0
  3. package/dist/js/schema/core/reference.json +3 -0
  4. package/dist/js/schema/in_memory_entity/base.json +0 -41
  5. package/dist/js/schema/in_memory_entity/defaultable.json +0 -41
  6. package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +74 -0
  7. package/dist/js/schema/in_memory_entity/named.json +0 -41
  8. package/dist/js/schema/in_memory_entity/named_defaultable.json +0 -41
  9. package/dist/js/schema/in_memory_entity/named_defaultable_has_metadata.json +0 -41
  10. package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json +0 -41
  11. package/dist/js/schema/job/base.json +9 -41
  12. package/dist/js/schema/job.json +9 -1025
  13. package/dist/js/schema/material/consistency_check.json +40 -0
  14. package/dist/js/schema/material.json +17 -16
  15. package/dist/js/schema/project.json +0 -41
  16. package/dist/js/schema/property/base.json +0 -41
  17. package/dist/js/schema/property/meta.json +0 -41
  18. package/dist/js/schema/property/raw.json +0 -41
  19. package/dist/js/schema/software/application.json +0 -41
  20. package/dist/js/schema/software/executable.json +0 -41
  21. package/dist/js/schema/software/flavor.json +0 -41
  22. package/dist/js/schema/software/template.json +0 -41
  23. package/dist/js/schema/software_directory/ml/unit/execution/evaluate/cross_validate.json +0 -164
  24. package/dist/js/schema/software_directory/ml/unit/execution/initialize.json +0 -164
  25. package/dist/js/schema/software_directory/ml/unit/execution/score.json +0 -164
  26. package/dist/js/schema/software_directory/ml/unit/execution/train.json +0 -164
  27. package/dist/js/schema/software_directory/ml/unit/execution.json +0 -656
  28. package/dist/js/schema/software_directory/ml/unit/processing/data_transformation/manipulation.json +0 -41
  29. package/dist/js/schema/software_directory/ml/unit/processing/data_transformation/scale_and_reduce.json +0 -41
  30. package/dist/js/schema/software_directory/ml/unit/processing/data_transformation.json +0 -41
  31. package/dist/js/schema/software_directory/ml/unit/processing/feature_selection/filter_based.json +0 -41
  32. package/dist/js/schema/software_directory/ml/unit/processing/feature_selection.json +0 -41
  33. package/dist/js/schema/software_directory/ml/unit/processing.json +0 -82
  34. package/dist/js/schema/software_directory/modeling/deepmd.json +0 -41
  35. package/dist/js/schema/software_directory/modeling/nwchem.json +0 -41
  36. package/dist/js/schema/software_directory/modeling/unit/execution.json +0 -164
  37. package/dist/js/schema/software_directory/modeling/vasp.json +0 -41
  38. package/dist/js/schema/software_directory/scripting/jupyter_lab.json +0 -41
  39. package/dist/js/schema/software_directory/scripting/python.json +0 -41
  40. package/dist/js/schema/software_directory/scripting/shell.json +0 -41
  41. package/dist/js/schema/software_directory/scripting/unit/execution.json +0 -164
  42. package/dist/js/schema/system/_material.json +3 -0
  43. package/dist/js/schema/system/_parent_job.json +3 -0
  44. package/dist/js/schema/system/_project.json +3 -0
  45. package/dist/js/schema/system/consistency_check.json +1 -5
  46. package/dist/js/schema/system/creator.json +3 -0
  47. package/dist/js/schema/system/creator_account.json +3 -0
  48. package/dist/js/schema/system/description.json +1 -1
  49. package/dist/js/schema/system/entity_reference.json +3 -0
  50. package/dist/js/schema/system/has_consistency_check.json +46 -0
  51. package/dist/js/schema/system/in_set.json +3 -0
  52. package/dist/js/schema/system/job_extended.json +6 -0
  53. package/dist/js/schema/system/owner.json +3 -0
  54. package/dist/js/schema/workflow/base.json +0 -41
  55. package/dist/js/schema/workflow/subworkflow/unit.json +0 -410
  56. package/dist/js/schema/workflow/subworkflow.json +0 -451
  57. package/dist/js/schema/workflow/unit/assertion.json +0 -41
  58. package/dist/js/schema/workflow/unit/assignment.json +0 -41
  59. package/dist/js/schema/workflow/unit/base.json +0 -41
  60. package/dist/js/schema/workflow/unit/condition.json +0 -41
  61. package/dist/js/schema/workflow/unit/execution.json +0 -164
  62. package/dist/js/schema/workflow/unit/io.json +0 -41
  63. package/dist/js/schema/workflow/unit/map.json +0 -41
  64. package/dist/js/schema/workflow/unit/processing.json +0 -41
  65. package/dist/js/schema/workflow/unit/reduce.json +0 -41
  66. package/dist/js/schema/workflow/unit/subworkflow.json +0 -41
  67. package/dist/js/schema/workflow/unit.json +0 -492
  68. package/dist/js/schema/workflow.json +0 -984
  69. package/dist/js/schemas.json +1 -1
  70. package/dist/js/types.d.ts +142 -3002
  71. package/package.json +3 -3
  72. package/schema/in_memory_entity/base.json +0 -6
  73. package/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json +13 -0
  74. package/schema/material/consistency_check.json +22 -0
  75. package/schema/material.json +6 -0
  76. package/schema/system/consistency_check.json +1 -5
  77. package/schema/system/description.json +1 -1
  78. package/schema/system/entity_reference.json +2 -1
  79. package/schema/system/has_consistency_check.json +16 -0
package/dist/js/schema/core/reference/modeling/exabyte.json CHANGED
@@ -27,6 +27,9 @@
27
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  "$schema": "http://json-schema.org/draft-07/schema#",
28
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  "title": "entity reference schema",
29
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  "type": "object",
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+ "required": [
31
+ "_id"
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+ ],
30
33
  "properties": {
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34
  "_id": {
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  "description": "entity identity",
package/dist/js/schema/core/reference/modeling.json CHANGED
@@ -26,6 +26,9 @@
26
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  "$schema": "http://json-schema.org/draft-07/schema#",
27
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  "title": "entity reference schema",
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  "type": "object",
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+ "required": [
30
+ "_id"
31
+ ],
29
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  "properties": {
30
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  "_id": {
31
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  "description": "entity identity",
package/dist/js/schema/core/reference.json CHANGED
@@ -30,6 +30,9 @@
30
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  "$schema": "http://json-schema.org/draft-07/schema#",
31
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  "title": "entity reference schema",
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  "type": "object",
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+ "required": [
34
+ "_id"
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+ ],
33
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  "properties": {
34
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  "_id": {
35
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  "description": "entity identity",
package/dist/js/schema/in_memory_entity/base.json CHANGED
@@ -15,47 +15,6 @@
15
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  "systemName": {
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  "type": "string"
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  },
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- "consistencyChecks": {
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- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
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- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
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- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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18
  "schemaVersion": {
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  "description": "entity's schema version. Used to distinct between different schemas.",
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  "type": "string",
package/dist/js/schema/in_memory_entity/defaultable.json CHANGED
@@ -15,47 +15,6 @@
15
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  "systemName": {
16
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  "type": "string"
17
17
  },
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- "consistencyChecks": {
19
- "type": "array",
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- "items": {
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- "$schema": "http://json-schema.org/draft-07/schema#",
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- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
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- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
35
- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
41
- ],
42
- "description": "Name of the consistency check that is performed, which is listed in an enum."
43
- },
44
- "severity": {
45
- "enum": [
46
- "info",
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- "warning",
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- "error"
49
- ],
50
- "description": "Severity level of the problem, which is used in UI to differentiate."
51
- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
59
18
  "schemaVersion": {
60
19
  "description": "entity's schema version. Used to distinct between different schemas.",
61
20
  "type": "string",
package/dist/js/schema/in_memory_entity/has_consistency_check_has_metadata_named_defaultable.json ADDED
@@ -0,0 +1,74 @@
1
+ {
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+ "$id": "in-memory-entity/has-consistency-check-has-metadata-named-defaultable",
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "title": "has consistency check has metadata named defaultable in-memory entity schema",
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+ "type": "object",
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+ "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
7
+ "properties": {
8
+ "_id": {
9
+ "description": "entity identity",
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+ "type": "string"
11
+ },
12
+ "slug": {
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+ "description": "entity slug",
14
+ "type": "string"
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+ },
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+ "systemName": {
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+ "type": "string"
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+ },
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+ "schemaVersion": {
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+ "description": "entity's schema version. Used to distinct between different schemas.",
21
+ "type": "string",
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+ "default": "2022.8.16"
23
+ },
24
+ "name": {
25
+ "description": "entity name",
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+ "type": "string"
27
+ },
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+ "isDefault": {
29
+ "description": "Identifies that entity is defaultable",
30
+ "type": "boolean",
31
+ "default": false
32
+ },
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+ "metadata": {
34
+ "type": "object"
35
+ },
36
+ "consistencyChecks": {
37
+ "type": "array",
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+ "items": {
39
+ "$schema": "http://json-schema.org/draft-07/schema#",
40
+ "title": "consistency check",
41
+ "type": "object",
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+ "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
43
+ "required": [
44
+ "key",
45
+ "name",
46
+ "severity",
47
+ "message"
48
+ ],
49
+ "properties": {
50
+ "key": {
51
+ "type": "string",
52
+ "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
53
+ },
54
+ "name": {
55
+ "type": "string",
56
+ "description": "Name of the consistency check that is performed, which is listed in an enum."
57
+ },
58
+ "severity": {
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+ "enum": [
60
+ "info",
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+ "warning",
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+ "error"
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+ ],
64
+ "description": "Severity level of the problem, which is used in UI to differentiate."
65
+ },
66
+ "message": {
67
+ "type": "string",
68
+ "description": "Message generated by the consistency check describing the problem."
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+ }
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+ }
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+ }
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+ }
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+ }
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+ }
package/dist/js/schema/in_memory_entity/named.json CHANGED
@@ -15,47 +15,6 @@
15
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  "systemName": {
16
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  "type": "string"
17
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  },
18
- "consistencyChecks": {
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- "type": "array",
20
- "items": {
21
- "$schema": "http://json-schema.org/draft-07/schema#",
22
- "title": "consistency check",
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- "type": "object",
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- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
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- "required": [
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- "key",
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- "name",
28
- "severity",
29
- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
35
- },
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- "name": {
37
- "enum": [
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- "default",
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- "atomsTooClose",
40
- "atomsOverlap"
41
- ],
42
- "description": "Name of the consistency check that is performed, which is listed in an enum."
43
- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
49
- ],
50
- "description": "Severity level of the problem, which is used in UI to differentiate."
51
- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
59
18
  "schemaVersion": {
60
19
  "description": "entity's schema version. Used to distinct between different schemas.",
61
20
  "type": "string",
package/dist/js/schema/in_memory_entity/named_defaultable.json CHANGED
@@ -15,47 +15,6 @@
15
15
  "systemName": {
16
16
  "type": "string"
17
17
  },
18
- "consistencyChecks": {
19
- "type": "array",
20
- "items": {
21
- "$schema": "http://json-schema.org/draft-07/schema#",
22
- "title": "consistency check",
23
- "type": "object",
24
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
25
- "required": [
26
- "key",
27
- "name",
28
- "severity",
29
- "message"
30
- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
35
- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
41
- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
43
- },
44
- "severity": {
45
- "enum": [
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- "info",
47
- "warning",
48
- "error"
49
- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
51
- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
55
- }
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- }
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- }
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- },
59
18
  "schemaVersion": {
60
19
  "description": "entity's schema version. Used to distinct between different schemas.",
61
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  "type": "string",
package/dist/js/schema/in_memory_entity/named_defaultable_has_metadata.json CHANGED
@@ -15,47 +15,6 @@
15
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  "systemName": {
16
16
  "type": "string"
17
17
  },
18
- "consistencyChecks": {
19
- "type": "array",
20
- "items": {
21
- "$schema": "http://json-schema.org/draft-07/schema#",
22
- "title": "consistency check",
23
- "type": "object",
24
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
25
- "required": [
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- "key",
27
- "name",
28
- "severity",
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- "message"
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- ],
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- "properties": {
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- "key": {
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- "type": "string",
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- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
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- },
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- "name": {
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- "enum": [
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- "default",
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- "atomsTooClose",
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- "atomsOverlap"
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- ],
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- "description": "Name of the consistency check that is performed, which is listed in an enum."
43
- },
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- "severity": {
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- "enum": [
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- "info",
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- "warning",
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- "error"
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- ],
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- "description": "Severity level of the problem, which is used in UI to differentiate."
51
- },
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- "message": {
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- "type": "string",
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- "description": "Message generated by the consistency check describing the problem."
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- }
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- }
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- }
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- },
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18
  "schemaVersion": {
60
19
  "description": "entity's schema version. Used to distinct between different schemas.",
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20
  "type": "string",
package/dist/js/schema/in_memory_entity/named_defaultable_runtime_items.json CHANGED
@@ -15,47 +15,6 @@
15
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  "systemName": {
16
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  "type": "string"
17
17
  },
18
- "consistencyChecks": {
19
- "type": "array",
20
- "items": {
21
- "$schema": "http://json-schema.org/draft-07/schema#",
22
- "title": "consistency check",
23
- "type": "object",
24
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
25
- "required": [
26
- "key",
27
- "name",
28
- "severity",
29
- "message"
30
- ],
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- "properties": {
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- "key": {
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- "type": "string",
34
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
35
- },
36
- "name": {
37
- "enum": [
38
- "default",
39
- "atomsTooClose",
40
- "atomsOverlap"
41
- ],
42
- "description": "Name of the consistency check that is performed, which is listed in an enum."
43
- },
44
- "severity": {
45
- "enum": [
46
- "info",
47
- "warning",
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- "error"
49
- ],
50
- "description": "Severity level of the problem, which is used in UI to differentiate."
51
- },
52
- "message": {
53
- "type": "string",
54
- "description": "Message generated by the consistency check describing the problem."
55
- }
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- }
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- }
58
- },
59
18
  "schemaVersion": {
60
19
  "description": "entity's schema version. Used to distinct between different schemas.",
61
20
  "type": "string",
package/dist/js/schema/job/base.json CHANGED
@@ -217,6 +217,9 @@
217
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  "$schema": "http://json-schema.org/draft-07/schema#",
218
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  "title": "entity reference schema",
219
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  "type": "object",
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+ "required": [
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+ "_id"
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+ ],
220
223
  "properties": {
221
224
  "_id": {
222
225
  "description": "entity identity",
@@ -236,6 +239,9 @@
236
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  "$schema": "http://json-schema.org/draft-07/schema#",
237
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  "title": "entity reference schema",
238
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  "type": "object",
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+ "required": [
243
+ "_id"
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+ ],
239
245
  "properties": {
240
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  "_id": {
241
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  "description": "entity identity",
@@ -255,6 +261,9 @@
255
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  "$schema": "http://json-schema.org/draft-07/schema#",
256
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  "title": "entity reference schema",
257
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  "type": "object",
264
+ "required": [
265
+ "_id"
266
+ ],
258
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  "properties": {
259
268
  "_id": {
260
269
  "description": "entity identity",
@@ -316,47 +325,6 @@
316
325
  "systemName": {
317
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  "type": "string"
318
327
  },
319
- "consistencyChecks": {
320
- "type": "array",
321
- "items": {
322
- "$schema": "http://json-schema.org/draft-07/schema#",
323
- "title": "consistency check",
324
- "type": "object",
325
- "description": "The output of consistency checks performed on data adhering to JSON schema, but inconsistent with scientific or logical rules, to show problems in UI.",
326
- "required": [
327
- "key",
328
- "name",
329
- "severity",
330
- "message"
331
- ],
332
- "properties": {
333
- "key": {
334
- "type": "string",
335
- "description": "Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'"
336
- },
337
- "name": {
338
- "enum": [
339
- "default",
340
- "atomsTooClose",
341
- "atomsOverlap"
342
- ],
343
- "description": "Name of the consistency check that is performed, which is listed in an enum."
344
- },
345
- "severity": {
346
- "enum": [
347
- "info",
348
- "warning",
349
- "error"
350
- ],
351
- "description": "Severity level of the problem, which is used in UI to differentiate."
352
- },
353
- "message": {
354
- "type": "string",
355
- "description": "Message generated by the consistency check describing the problem."
356
- }
357
- }
358
- }
359
- },
360
328
  "schemaVersion": {
361
329
  "description": "entity's schema version. Used to distinct between different schemas.",
362
330
  "type": "string",