@manuscripts/transform 4.3.22 → 4.3.24

package/dist/es/jats/importer/jats-parser-utils.js

@@ -13,7 +13,7 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-import { schema, } from '../../schema';
+import { isContributorNode, schema } from '../../schema';
 import { generateNodeID } from '../../transformer';
 export const updateDocumentIDs = (node) => {
     const replacements = new Map();
@@ -77,37 +77,13 @@ const updateNodeRIDS = (node, replacements, warnings) => {
     };
 };
 const updateContributorNodesIDS = (node, replacements, warnings) => {
-    if (node.type === schema.nodes.contributor) {
-        const footnote = node.attrs.footnote
-            ?.map((fn) => {
-            return replacements.get(fn.noteID)
-                ? {
-                    ...fn,
-                    noteID: replacements.get(fn.noteID),
-                }
-                : undefined;
-        })
-            .filter(Boolean);
-        const corresp = node.attrs.corresp
-            ?.map((corresp) => {
-            return replacements.get(corresp.correspID)
-                ? {
-                    ...corresp,
-                    correspID: replacements.get(corresp.correspID),
-                }
-                : undefined;
-        })
-            .filter(Boolean);
-        const affiliations = node.attrs.affiliations
-            .map((affiliation) => {
-            return replacements.get(affiliation);
-        })
-            .filter(Boolean);
+    if (isContributorNode(node)) {
+        const replaceAll = (ids) => ids?.map((i) => replacements.get(i)).filter((id) => !!id);
         node.attrs = {
             ...node.attrs,
-            footnote,
-            corresp,
-            affiliations,
+            footnoteIDs: replaceAll(node.attrs.footnoteIDs),
+            correspIDs: replaceAll(node.attrs.correspIDs),
+            affiliationIDs: replaceAll(node.attrs.affiliationIDs),
         };
     }
     if (node.type !== schema.nodes.contributors) {

package/dist/es/jats/importer/jats-transformations.js

@@ -364,6 +364,16 @@ export const fixTables = (doc, body, createElement) => {
         if (!table) {
             return;
         }
+        const tfoot = table.querySelector('tfoot');
+        const tbody = table.querySelector('tbody');
+        if (tfoot && tbody) {
+            const tfootRows = Array.from(tfoot.querySelectorAll(':scope > tr'));
+            for (const row of tfootRows) {
+                removeNodeFromParent(row);
+                tbody.appendChild(row);
+            }
+            removeNodeFromParent(tfoot);
+        }
         const colgroup = table.querySelector('colgroup');
         const cols = table.querySelectorAll('col');
         if (!colgroup && table.firstChild && cols.length > 0) {

package/dist/es/jats/importer/parse-jats-article.js

@@ -16,7 +16,6 @@
 import { schema } from '../../schema';
 import { markComments } from './jats-comments';
 import { JATSDOMParser } from './jats-dom-parser';
-import { parseJournal } from './jats-journal-meta-parser';
 import { updateDocumentIDs } from './jats-parser-utils';
 import { addMissingCaptions, createAbstracts, createAccessibilityItems, createAttachments, createBackmatter, createBody, createBoxedElementSection, createKeywordsSection, createSupplementaryMaterialsSection, createTitles, fixTables, moveAffiliations, moveAuthorNotes, moveAwards, moveCaptionsToEnd, moveContributors, moveHeroImage, moveReferencesToBackmatter, orderTableFootnote, } from './jats-transformations';
 const processJATS = (doc, sectionCategories) => {
@@ -61,7 +60,6 @@ const processJATS = (doc, sectionCategories) => {
 };
 const createElementFn = (doc) => (tagName) => doc.createElement(tagName);
 export const parseJATSArticle = (doc, sectionCategories, template) => {
-    const journal = parseJournal(doc);
     processJATS(doc, sectionCategories);
     const node = new JATSDOMParser(sectionCategories, schema).parse(doc)
         .firstChild;
@@ -72,8 +70,5 @@ export const parseJATSArticle = (doc, sectionCategories, template) => {
     if (template) {
         node.attrs.prototype = template;
     }
-    return {
-        node,
-        journal,
-    };
+    return node;
 };