@manuscripts/transform 4.3.22 → 4.3.24

package/dist/cjs/schema/__tests__/migration.test.js

@@ -1,43 +1,9 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
 Object.defineProperty(exports, "__esModule", { value: true });
-const prevPackage = __importStar(require("migration-base"));
 const migrate_1 = require("../migration/migrate");
+const docs_1 = require("./docs");
 describe('Prosemirror migration schema', () => {
-    const oldDoc = prevPackage.createTestDoc().toJSON();
-    test('Migrating doc from prev version to the current', () => {
-        expect(() => (0, migrate_1.migrateFor)(oldDoc, prevPackage.getVersion())).not.toThrow();
+    test('Migrating doc from version 2.3.20 to the current', () => {
+        expect(() => (0, migrate_1.migrateFor)(docs_1.v2_3_20, '2.3.20')).not.toThrow();
     });
 });

package/dist/cjs/schema/migration/migration-scripts/4.3.12.js

@@ -0,0 +1,39 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+class Migration4312 {
+    constructor() {
+        this.fromVersion = '4.3.11';
+        this.toVersion = '4.3.12';
+    }
+    migrateNode(node) {
+        if (node.type === 'contributor') {
+            if (node.attrs.affiliations) {
+                node.attrs.affiliationIDs = node.attrs.affiliations;
+                delete node.attrs.affiliations;
+            }
+            if (Array.isArray(node.attrs.corresp)) {
+                node.attrs.correspIDs = node.attrs.corresp.map((c) => c.correspID);
+                delete node.attrs.corresp;
+            }
+            if (Array.isArray(node.attrs.footnote)) {
+                node.attrs.footnoteIDs = node.attrs.footnote.map((f) => f.noteID);
+                delete node.attrs.footnote;
+            }
+            node.attrs.given = node.attrs.bibliographicName.given;
+            node.attrs.family = node.attrs.bibliographicName.family;
+            node.attrs.suffix = node.attrs.bibliographicName.suffix;
+            node.attrs.ORCID = node.attrs.ORCIDIdentifier;
+            delete node.attrs.bibliographicName;
+            delete node.attrs.userID;
+            delete node.attrs.ORCIDIdentifier;
+        }
+        if (node.type === 'comment') {
+            const contribution = node.attrs.contributions[0];
+            node.attrs.userID = contribution.profileID;
+            node.attrs.timestamp = contribution.timestamp;
+            delete node.attrs.contributions;
+        }
+        return node;
+    }
+}
+exports.default = Migration4312;

package/dist/cjs/schema/migration/migration-scripts/index.js

@@ -29,6 +29,7 @@ const _3_0_55_1 = __importDefault(require("./3.0.55"));
 const _3_0_56_1 = __importDefault(require("./3.0.56"));
 const _4_2_13_1 = __importDefault(require("./4.2.13"));
 const _4_2_15_1 = __importDefault(require("./4.2.15"));
+const _4_3_12_1 = __importDefault(require("./4.3.12"));
 const migrations = [
     new _1_2_5_1.default(),
     new _2_3_22_1.default(),
@@ -41,5 +42,6 @@ const migrations = [
     new _3_0_56_1.default(),
     new _4_2_13_1.default(),
     new _4_2_15_1.default(),
+    new _4_3_12_1.default(),
 ];
 exports.default = migrations;

package/dist/cjs/schema/nodes/blockquote_element.js

@@ -16,7 +16,6 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isBlockquoteElement = exports.blockquoteElement = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
 exports.blockquoteElement = {
     content: 'paragraph+ attribution',
     attrs: {
@@ -48,7 +47,6 @@ exports.blockquoteElement = {
         if (blockquoteElementNode.attrs.id) {
             attrs.id = blockquoteElementNode.attrs.id;
         }
-        attrs['data-object-type'] = json_schema_1.ObjectTypes.QuoteElement;
         if (blockquoteElementNode.attrs.placeholder) {
             attrs['data-placeholder-text'] = blockquoteElementNode.attrs.placeholder;
         }

package/dist/cjs/schema/nodes/comment.js

@@ -23,7 +23,8 @@ exports.comment = {
         target: { default: '' },
         selector: { default: undefined },
         resolved: { default: false },
-        contributions: { default: [] },
+        userID: { default: '' },
+        timestamp: { default: 0 },
         originalText: { default: '' },
     },
 };

package/dist/cjs/schema/nodes/contributor.js

@@ -7,21 +7,21 @@ exports.contributor = {
     attrs: {
         id: { default: '' },
         role: { default: '' },
-        email: { default: '' },
-        affiliations: { default: [] },
-        footnote: { default: undefined },
-        corresp: { default: undefined },
-        bibliographicName: { default: {} },
-        userID: { default: undefined },
-        invitationID: { default: undefined },
-        isCorresponding: { default: undefined },
-        isJointContributor: { default: undefined },
-        ORCIDIdentifier: { default: undefined },
+        correspIDs: { default: [] },
+        affiliationIDs: { default: [] },
+        footnoteIDs: { default: [] },
+        given: { default: undefined },
+        family: { default: undefined },
+        prefix: { default: undefined },
+        suffix: { default: undefined },
+        email: { default: undefined },
+        ORCID: { default: undefined },
+        isCorresponding: { default: false },
+        isJointContributor: { default: false },
         priority: { default: undefined },
         creditRoles: { default: [] },
         dataTracked: { default: null },
         contents: { default: '' },
-        prefix: { default: '' },
     },
     group: 'block',
     toDOM: (node) => {

package/dist/cjs/schema/nodes/equation.js

@@ -16,7 +16,6 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.equation = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
 exports.equation = {
     attrs: {
         id: { default: '' },
@@ -27,7 +26,7 @@ exports.equation = {
     group: 'block',
     parseDOM: [
         {
-            tag: `div.${json_schema_1.ObjectTypes.Equation}`,
+            tag: `div.MPEquation`,
             getAttrs: (p) => {
                 const htmlEl = p;
                 return {
@@ -42,7 +41,6 @@ exports.equation = {
         const equationNode = node;
         const { id, contents, format } = equationNode.attrs;
         const dom = document.createElement('div');
-        dom.classList.add(json_schema_1.ObjectTypes.Equation);
         dom.setAttribute('id', id);
         if (format) {
             dom.setAttribute('data-equation-format', format);

package/dist/cjs/schema/nodes/list.js

@@ -1,7 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isListNode = exports.listItem = exports.list = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
 exports.list = {
     content: 'list_item+',
     group: 'block list element',
@@ -39,7 +38,6 @@ exports.list = {
             {
                 id: list.attrs.id,
                 'list-type': list.attrs.listStyleType,
-                'data-object-type': json_schema_1.ObjectTypes.ListElement,
             },
             0,
         ];

package/dist/cjs/schema/nodes/listing.js

@@ -16,7 +16,6 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isListingNode = exports.listing = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
 exports.listing = {
     attrs: {
         id: { default: '' },
@@ -32,7 +31,7 @@ exports.listing = {
     group: 'block',
     parseDOM: [
         {
-            tag: `pre.${json_schema_1.ObjectTypes.Listing}`,
+            tag: 'pre.MPListing',
             preserveWhitespace: 'full',
             getAttrs: (p) => {
                 const node = p;
@@ -61,7 +60,6 @@ exports.listing = {
         const listingNode = node;
         const dom = document.createElement('div');
         dom.setAttribute('id', listingNode.attrs.id);
-        dom.classList.add(json_schema_1.ObjectTypes.Listing);
         dom.setAttribute('data-language', listingNode.attrs.language);
         dom.setAttribute('data-languageKey', listingNode.attrs.languageKey);
         dom.textContent = listingNode.attrs.contents;

package/dist/cjs/schema/nodes/paragraph.js

@@ -16,7 +16,6 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isParagraphNode = exports.paragraph = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
 exports.paragraph = {
     content: 'inline*',
     attrs: {
@@ -48,7 +47,6 @@ exports.paragraph = {
         if (paragraphNode.attrs.id) {
             attrs.id = paragraphNode.attrs.id;
         }
-        attrs['data-object-type'] = json_schema_1.ObjectTypes.ParagraphElement;
         if (paragraphNode.attrs.placeholder) {
             attrs['data-placeholder-text'] = paragraphNode.attrs.placeholder;
         }

package/dist/cjs/schema/nodes/pullquote_element.js

@@ -16,7 +16,6 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isPullquoteElement = exports.pullquoteElement = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
 exports.pullquoteElement = {
     content: 'quote_image? paragraph+ attribution',
     attrs: {
@@ -49,7 +48,6 @@ exports.pullquoteElement = {
             attrs.id = pullquoteElementNode.attrs.id;
         }
         attrs.class = 'pullquote';
-        attrs['data-object-type'] = json_schema_1.ObjectTypes.QuoteElement;
         if (pullquoteElementNode.attrs.placeholder) {
             attrs['data-placeholder-text'] = pullquoteElementNode.attrs.placeholder;
         }

package/dist/cjs/transformer/id.js

@@ -17,18 +17,6 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.generateNodeID = void 0;
 const uuid_1 = require("uuid");
-const node_types_1 = require("./node-types");
-const generateNodeID = (type) => {
-    const uniqueID = ':' + (0, uuid_1.v4)().toUpperCase();
-    let name = node_types_1.nodeTypesMap.get(type);
-    if (name === undefined) {
-        name =
-            'MP' +
-                type.name
-                    .split('_')
-                    .map((w) => w.charAt(0).toUpperCase() + w.slice(1))
-                    .join('');
-    }
-    return name + uniqueID;
-};
+const node_names_1 = require("./node-names");
+const generateNodeID = (type) => `MP${(0, node_names_1.typeName)(type)}:${(0, uuid_1.v4)()}`;
 exports.generateNodeID = generateNodeID;

package/dist/cjs/transformer/node-names.js

@@ -15,7 +15,7 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.nodeNames = void 0;
+exports.typeName = exports.nodeNames = void 0;
 const schema_1 = require("../schema");
 exports.nodeNames = new Map([
     [schema_1.schema.nodes.title, 'Title'],
@@ -65,3 +65,8 @@ exports.nodeNames = new Map([
     [schema_1.schema.nodes.supplements, 'Supplements'],
     [schema_1.schema.nodes.attachments, 'Main Document'],
 ]);
+const typeName = (type) => type.name
+    .split('_')
+    .map((w) => w.charAt(0).toUpperCase() + w.slice(1))
+    .join('');
+exports.typeName = typeName;

package/dist/cjs/transformer/node-types.js

@@ -15,54 +15,8 @@
  * limitations under the License.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isNodeType = exports.isSectionNodeType = exports.isElementNodeType = exports.isExecutableNodeType = exports.nodeTypesMap = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
+exports.isNodeType = exports.isSectionNodeType = exports.isElementNodeType = exports.isExecutableNodeType = void 0;
 const schema_1 = require("../schema");
-exports.nodeTypesMap = new Map([
-    [schema_1.schema.nodes.abstracts, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.body, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.backmatter, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.comment, json_schema_1.ObjectTypes.CommentAnnotation],
-    [schema_1.schema.nodes.bibliography_item, json_schema_1.ObjectTypes.BibliographyItem],
-    [schema_1.schema.nodes.bibliography_element, json_schema_1.ObjectTypes.BibliographyElement],
-    [schema_1.schema.nodes.bibliography_section, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.blockquote_element, json_schema_1.ObjectTypes.QuoteElement],
-    [schema_1.schema.nodes.list, json_schema_1.ObjectTypes.ListElement],
-    [schema_1.schema.nodes.citation, json_schema_1.ObjectTypes.Citation],
-    [schema_1.schema.nodes.equation, json_schema_1.ObjectTypes.Equation],
-    [schema_1.schema.nodes.equation_element, json_schema_1.ObjectTypes.EquationElement],
-    [schema_1.schema.nodes.figure, json_schema_1.ObjectTypes.Figure],
-    [schema_1.schema.nodes.missing_figure, json_schema_1.ObjectTypes.MissingFigure],
-    [schema_1.schema.nodes.figure_element, json_schema_1.ObjectTypes.FigureElement],
-    [schema_1.schema.nodes.footnote, json_schema_1.ObjectTypes.Footnote],
-    [schema_1.schema.nodes.footnotes_element, json_schema_1.ObjectTypes.FootnotesElement],
-    [schema_1.schema.nodes.footnotes_section, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.graphical_abstract_section, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.trans_graphical_abstract, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.highlight_marker, json_schema_1.ObjectTypes.HighlightMarker],
-    [schema_1.schema.nodes.keyword, json_schema_1.ObjectTypes.Keyword],
-    [schema_1.schema.nodes.keywords_element, json_schema_1.ObjectTypes.KeywordsElement],
-    [schema_1.schema.nodes.keywords, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.keyword_group, json_schema_1.ObjectTypes.KeywordGroup],
-    [schema_1.schema.nodes.listing, json_schema_1.ObjectTypes.Listing],
-    [schema_1.schema.nodes.listing_element, json_schema_1.ObjectTypes.ListingElement],
-    [schema_1.schema.nodes.manuscript, json_schema_1.ObjectTypes.Manuscript],
-    [schema_1.schema.nodes.paragraph, json_schema_1.ObjectTypes.ParagraphElement],
-    [schema_1.schema.nodes.pullquote_element, json_schema_1.ObjectTypes.QuoteElement],
-    [schema_1.schema.nodes.section, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.table, json_schema_1.ObjectTypes.Table],
-    [schema_1.schema.nodes.table_element, json_schema_1.ObjectTypes.TableElement],
-    [schema_1.schema.nodes.affiliation, json_schema_1.ObjectTypes.Affiliation],
-    [schema_1.schema.nodes.contributor, json_schema_1.ObjectTypes.Contributor],
-    [schema_1.schema.nodes.table_element_footer, json_schema_1.ObjectTypes.TableElementFooter],
-    [schema_1.schema.nodes.contributors, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.affiliations, json_schema_1.ObjectTypes.Section],
-    [schema_1.schema.nodes.title, json_schema_1.ObjectTypes.Titles],
-    [schema_1.schema.nodes.supplement, json_schema_1.ObjectTypes.Supplement],
-    [schema_1.schema.nodes.author_notes, json_schema_1.ObjectTypes.AuthorNotes],
-    [schema_1.schema.nodes.corresp, json_schema_1.ObjectTypes.Corresponding],
-    [schema_1.schema.nodes.box_element, json_schema_1.ObjectTypes.Section],
-]);
 const isExecutableNodeType = (type) => (0, schema_1.hasGroup)(type, schema_1.GROUP_EXECUTABLE);
 exports.isExecutableNodeType = isExecutableNodeType;
 const isElementNodeType = (type) => (0, schema_1.hasGroup)(type, schema_1.GROUP_ELEMENT);

package/dist/cjs/version.js

@@ -1,4 +1,4 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.VERSION = void 0;
-exports.VERSION = "4.3.22";
+exports.VERSION = "4.3.24";

package/dist/es/jats/__tests__/jats-exporter.test.js

@@ -29,17 +29,16 @@ describe('JATS exporter', () => {
     test('export latest version', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-example-full.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         const result = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
         });
         expect(result).toMatchSnapshot('jats-export');
     });
     test('export with & and < in bibliography metadata', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-example-full.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         let biblio = null;
         node.descendants((n) => {
             if (isBibliographyItemNode(n)) {
@@ -49,17 +48,15 @@ describe('JATS exporter', () => {
         biblio.attrs.title += ' & Sons 55 < 135';
         const result = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
         });
         expect(result).toMatchSnapshot('jats-export-with-xml-unsafe-in-biblios');
     });
     test('export v1.1', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-example-full.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         const result = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
             version: '1.1',
         });
         expect(result).toMatchSnapshot('jats-export-1.1');
@@ -67,11 +64,10 @@ describe('JATS exporter', () => {
     test('export unknown version', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-example-full.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         await expect(async () => {
             await transformer.serializeToJATS(node, {
                 csl: DEFAULT_CSL_OPTIONS,
-                journal,
                 version: '1.0',
             });
         }).rejects.toThrow(Error);
@@ -79,10 +75,9 @@ describe('JATS exporter', () => {
     test('export table-wrap-foot', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-tables-example.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         const xml = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
         });
         const resultDoc = parseXMLWithDTD(xml);
         const tableWrapFoot = resultDoc.get('//table-wrap/table-wrap-foot');
@@ -90,36 +85,12 @@ describe('JATS exporter', () => {
         expect(paragraph).not.toBeUndefined();
         expect(tableWrapFoot).not.toBeUndefined();
     });
-    test('add journal ID', async () => {
-        const transformer = new JATSExporter();
-        const input = await readAndParseFixture('jats-example-full.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
-            csl: DEFAULT_CSL_OPTIONS,
-            journal,
-        });
-        expect(xml).toMatchSnapshot('jats-export-submitted');
-    });
-    test('journal metadata', async () => {
-        const transformer = new JATSExporter();
-        const input = await readAndParseFixture('jats-import.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
-        const xml = await transformer.serializeToJATS(node, {
-            csl: DEFAULT_CSL_OPTIONS,
-            journal,
-        });
-        const output = parseXMLWithDTD(xml);
-        expect(output.errors).toHaveLength(0);
-        expect(output.get('//journal-title').text()).toBe('Brain and Behavior');
-        expect(output.get('//issn').text()).toBe('2162-3279');
-    });
     test('DTD validation', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-import.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         const xml = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
         });
         const { errors } = parseXMLWithDTD(xml);
         expect(errors).toHaveLength(0);
@@ -127,10 +98,9 @@ describe('JATS exporter', () => {
     test('DTD validation: article with title markup and citations', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-document.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         const xml = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
         });
         const { errors } = parseXMLWithDTD(xml);
         expect(errors).toHaveLength(0);
@@ -138,10 +108,9 @@ describe('JATS exporter', () => {
     test('Export link', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-import.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         const xml = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
         });
         const output = parseXMLWithDTD(xml);
         const link = output.get('//ext-link[@ext-link-type="uri"]');
@@ -157,10 +126,9 @@ describe('JATS exporter', () => {
     test('DTD validation for MathML representation', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-example-doc.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         const xml = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
         });
         const { errors } = parseXMLWithDTD(xml);
         expect(errors).toHaveLength(0);
@@ -168,10 +136,9 @@ describe('JATS exporter', () => {
     test('export with supplement', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-import.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         const xml = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
         });
         const resultDoc = parseXMLWithDTD(xml);
         const supplementaryMaterial = resultDoc.get('//supplementary-material');
@@ -190,10 +157,9 @@ describe('JATS exporter', () => {
     test('export footnotes', async () => {
         const transformer = new JATSExporter();
         const input = await readAndParseFixture('jats-fn-group.xml');
-        const { node, journal } = parseJATSArticle(input, sectionCategories);
+        const node = parseJATSArticle(input, sectionCategories);
         const xml = await transformer.serializeToJATS(node, {
             csl: DEFAULT_CSL_OPTIONS,
-            journal,
         });
         const footnoteCategories = [
             'con',