@manuscripts/transform 2.3.34-LEAN-3911.2 → 2.3.35

package/dist/cjs/jats/importer/jats-front-transformations.js

@@ -1,262 +0,0 @@
-"use strict";
-/*!
- * © 2024 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.jatsFrontTransformations = exports.defaultTitle = void 0;
-const json_schema_1 = require("@manuscripts/json-schema");
-const utils_1 = require("../../lib/utils");
-const transformer_1 = require("../../transformer");
-const jats_parser_utils_1 = require("./jats-parser-utils");
-exports.defaultTitle = 'Untitled Manuscript';
-exports.jatsFrontTransformations = {
-    setArticleAttrs(doc, template) {
-        var _a;
-        const doi = (_a = doc.querySelector('article-meta > article-id[pub-id-type="doi"]')) === null || _a === void 0 ? void 0 : _a.textContent;
-        const Attrs = {
-            DOI: doi !== null && doi !== void 0 ? doi : '',
-            prototype: template !== null && template !== void 0 ? template : '',
-            id: (0, transformer_1.generateID)(json_schema_1.ObjectTypes.Manuscript),
-        };
-        Object.entries(Attrs).forEach(([key, value]) => {
-            var _a;
-            if (value) {
-                (_a = doc.querySelector('article')) === null || _a === void 0 ? void 0 : _a.setAttribute(key, value);
-            }
-        });
-    },
-    createTitle(front, createElement) {
-        var _a;
-        let title = front.querySelector('article-meta > title-group > article-title');
-        if (title) {
-            title.innerHTML = (_a = (0, jats_parser_utils_1.htmlFromJatsNode)(title, createElement)) !== null && _a !== void 0 ? _a : exports.defaultTitle;
-        }
-        else {
-            title = createElement('article-title');
-            title.textContent = exports.defaultTitle;
-        }
-        return title;
-    },
-    createAuthorNotes(document, createElement) {
-        const authornotes = document.querySelector('article-meta > author-notes');
-        if (!authornotes) {
-            return;
-        }
-        const authorNotesEl = createElement('author-notes');
-        authornotes
-            .querySelectorAll('fn:not([fn-type]), :scope > p, corresp')
-            .forEach((node) => {
-            switch (node.nodeName) {
-                case 'fn': {
-                    this.appendFootnote(node, authorNotesEl, createElement);
-                    break;
-                }
-                case 'p': {
-                    this.appendParagraph(document, node, authorNotesEl);
-                    break;
-                }
-                case 'corresp': {
-                    this.appendCorresp(node, authorNotesEl, createElement);
-                    break;
-                }
-            }
-        });
-        return authorNotesEl;
-    },
-    appendFootnote(node, element, createElement) {
-        const fnEl = createElement('fn-author');
-        fnEl.innerHTML = node.innerHTML;
-        fnEl.setAttribute('kind', 'footnote');
-        const id = node.getAttribute('id');
-        if (id) {
-            fnEl.setAttribute('id', id);
-        }
-        element.append(fnEl);
-    },
-    appendParagraph(document, node, element) {
-        const pEl = document.createElementNS(null, 'p');
-        pEl.innerHTML = node.innerHTML;
-        element.append(pEl);
-    },
-    appendCorresp(node, element, createElement) {
-        var _a, _b;
-        const correspEl = createElement('corresp');
-        const label = node.querySelector('label');
-        if (label) {
-            label.remove();
-        }
-        correspEl.textContent = ((_a = node.textContent) === null || _a === void 0 ? void 0 : _a.trim()) || '';
-        correspEl.setAttribute('label', ((_b = label === null || label === void 0 ? void 0 : label.textContent) === null || _b === void 0 ? void 0 : _b.trim()) || '');
-        const id = node.getAttribute('id');
-        if (id) {
-            correspEl.setAttribute('id', id);
-        }
-        element.append(correspEl);
-    },
-    createContributors(front, createElement) {
-        const contribs = front.querySelectorAll('article-meta > contrib-group > contrib[contrib-type="author"]');
-        const contributors = createElement('contributors');
-        contribs.forEach((element, priority) => {
-            const contributor = this.createContributorElement(priority, createElement);
-            this.setNameAttrs(element, contributor);
-            this.setOrcidAttribute(element, contributor);
-            this.setIsCorrespondingAttribute(element, contributor);
-            this.setContributorReferences(element, contributor, createElement);
-            contributors.append(contributor);
-        });
-        return contributors;
-    },
-    createContributorElement(priority, createElement) {
-        const contributor = createElement('contributor');
-        contributor.setAttribute('priority', priority.toString());
-        contributor.setAttribute('role', 'author');
-        return contributor;
-    },
-    setNameAttrs(node, element) {
-        const given = (0, utils_1.getTrimmedTextContent)(node, 'name > given-names');
-        if (given) {
-            element.setAttribute('given', given);
-        }
-        const surname = (0, utils_1.getTrimmedTextContent)(node, 'name > surname');
-        if (surname) {
-            element.setAttribute('family', surname);
-        }
-    },
-    setOrcidAttribute(node, element) {
-        const orcid = (0, utils_1.getTrimmedTextContent)(node, 'contrib-id[contrib-id-type="orcid"]');
-        if (orcid) {
-            element.setAttribute('ORCIDIdentifier', orcid);
-        }
-    },
-    setIsCorrespondingAttribute(node, element) {
-        const isCorresponding = node.getAttribute('corresp') === 'yes';
-        if (isCorresponding) {
-            element.setAttribute('isCorresponding', isCorresponding.toString());
-        }
-    },
-    setContributorReferences(node, element, createElement) {
-        const xrefs = node.querySelectorAll('xref');
-        const footnotes = createElement('fns');
-        const corresps = createElement('corresps');
-        const affs = createElement('affs');
-        xrefs.forEach((xref) => {
-            const rid = xref.getAttribute('rid');
-            const type = xref.getAttribute('ref-type');
-            if (rid) {
-                switch (type) {
-                    case 'fn':
-                        this.appendFootnoteID(xref, footnotes, rid, createElement);
-                        break;
-                    case 'corresp':
-                        this.appendCorrespID(xref, corresps, rid, createElement);
-                        break;
-                    case 'aff':
-                        this.appendAffiliationID(affs, rid, createElement);
-                        break;
-                }
-            }
-        });
-        element.append(footnotes, corresps, affs);
-    },
-    appendFootnoteID(xref, footnotes, rid, createElement) {
-        var _a;
-        const fn = createElement('fn');
-        fn.setAttribute('noteID', rid);
-        fn.setAttribute('noteLabel', ((_a = xref.textContent) === null || _a === void 0 ? void 0 : _a.trim()) || '');
-        footnotes.append(fn);
-    },
-    appendCorrespID(xref, corresps, rid, createElement) {
-        var _a;
-        const corresp = createElement('corresp');
-        corresp.setAttribute('correspID', rid);
-        corresp.setAttribute('correspLabel', ((_a = xref.textContent) === null || _a === void 0 ? void 0 : _a.trim()) || '');
-        corresps.append(corresp);
-    },
-    appendAffiliationID(affs, rid, createElement) {
-        const rids = rid.split(/\s+/).filter(Boolean);
-        if (rids.length) {
-            rids.forEach((affID) => {
-                const aff = createElement('aff');
-                aff.setAttribute('affiliationID', affID);
-                affs.append(aff);
-            });
-        }
-    },
-    createAffiliations(front, createElement) {
-        const affiliations = front.querySelectorAll('article-meta > contrib-group > aff');
-        const affiliationGroup = createElement('affiliations');
-        affiliations.forEach((element, priority) => {
-            const affiliation = this.createAffiliationElement(element, priority, createElement);
-            this.setInstitutionAttrs(element, affiliation);
-            this.setAddressAttrs(element, affiliation);
-            this.appendEmail(element, affiliation);
-            affiliationGroup.append(affiliation);
-        });
-        return affiliationGroup;
-    },
-    createAffiliationElement(element, priority, createElement) {
-        const affiliation = createElement('affiliation');
-        affiliation.setAttribute('priority', priority.toString());
-        const id = element.getAttribute('id');
-        if (id) {
-            affiliation.setAttribute('id', id);
-        }
-        return affiliation;
-    },
-    appendEmail(element, affiliation) {
-        const emailEl = element.querySelector('email');
-        if (emailEl) {
-            affiliation.appendChild(emailEl);
-        }
-    },
-    setInstitutionAttrs(element, affiliation) {
-        var _a;
-        for (const node of element.querySelectorAll('institution')) {
-            const content = (_a = node.textContent) === null || _a === void 0 ? void 0 : _a.trim();
-            if (!content) {
-                continue;
-            }
-            const type = node.getAttribute('content-type');
-            if (type === 'dept') {
-                affiliation.setAttribute('department', content);
-            }
-            else {
-                affiliation.setAttribute('institution', content);
-            }
-        }
-    },
-    setAddressAttrs(element, affiliation) {
-        const addressLine1 = (0, utils_1.getTrimmedTextContent)(element, 'addr-line:nth-of-type(1)');
-        const addressLine2 = (0, utils_1.getTrimmedTextContent)(element, 'addr-line:nth-of-type(2)');
-        const addressLine3 = (0, utils_1.getTrimmedTextContent)(element, 'addr-line:nth-of-type(3)');
-        const postCode = (0, utils_1.getTrimmedTextContent)(element, 'postal-code');
-        const country = (0, utils_1.getTrimmedTextContent)(element, 'country');
-        if (addressLine1) {
-            affiliation.setAttribute('addressLine1', addressLine1);
-        }
-        if (addressLine2) {
-            affiliation.setAttribute('addressLine2', addressLine2);
-        }
-        if (addressLine3) {
-            affiliation.setAttribute('addressLine3', addressLine3);
-        }
-        if (postCode) {
-            affiliation.setAttribute('postCode', postCode);
-        }
-        if (country) {
-            affiliation.setAttribute('country', country);
-        }
-    },
-};

package/dist/es/jats/importer/create-article-node.js

@@ -1,27 +0,0 @@
-/*!
- * © 2024 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-import { schema } from '../../schema';
-import { defaultTitle } from './jats-front-transformations';
-export const createArticleNode = (manuscript) => {
-    const title = schema.nodes.title.createChecked({}, schema.text(defaultTitle));
-    return schema.nodes.manuscript.createAndFill({
-        id: manuscript._id,
-        doi: manuscript.DOI,
-        articleType: manuscript.articleType,
-        prototype: manuscript.prototype,
-        primaryLanguageCode: manuscript.primaryLanguageCode,
-    }, title);
-};

package/dist/es/jats/importer/jats-front-transformations.js

@@ -1,259 +0,0 @@
-/*!
- * © 2024 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-import { ObjectTypes } from '@manuscripts/json-schema';
-import { getTrimmedTextContent } from '../../lib/utils';
-import { generateID } from '../../transformer';
-import { htmlFromJatsNode } from './jats-parser-utils';
-export const defaultTitle = 'Untitled Manuscript';
-export const jatsFrontTransformations = {
-    setArticleAttrs(doc, template) {
-        var _a;
-        const doi = (_a = doc.querySelector('article-meta > article-id[pub-id-type="doi"]')) === null || _a === void 0 ? void 0 : _a.textContent;
-        const Attrs = {
-            DOI: doi !== null && doi !== void 0 ? doi : '',
-            prototype: template !== null && template !== void 0 ? template : '',
-            id: generateID(ObjectTypes.Manuscript),
-        };
-        Object.entries(Attrs).forEach(([key, value]) => {
-            var _a;
-            if (value) {
-                (_a = doc.querySelector('article')) === null || _a === void 0 ? void 0 : _a.setAttribute(key, value);
-            }
-        });
-    },
-    createTitle(front, createElement) {
-        var _a;
-        let title = front.querySelector('article-meta > title-group > article-title');
-        if (title) {
-            title.innerHTML = (_a = htmlFromJatsNode(title, createElement)) !== null && _a !== void 0 ? _a : defaultTitle;
-        }
-        else {
-            title = createElement('article-title');
-            title.textContent = defaultTitle;
-        }
-        return title;
-    },
-    createAuthorNotes(document, createElement) {
-        const authornotes = document.querySelector('article-meta > author-notes');
-        if (!authornotes) {
-            return;
-        }
-        const authorNotesEl = createElement('author-notes');
-        authornotes
-            .querySelectorAll('fn:not([fn-type]), :scope > p, corresp')
-            .forEach((node) => {
-            switch (node.nodeName) {
-                case 'fn': {
-                    this.appendFootnote(node, authorNotesEl, createElement);
-                    break;
-                }
-                case 'p': {
-                    this.appendParagraph(document, node, authorNotesEl);
-                    break;
-                }
-                case 'corresp': {
-                    this.appendCorresp(node, authorNotesEl, createElement);
-                    break;
-                }
-            }
-        });
-        return authorNotesEl;
-    },
-    appendFootnote(node, element, createElement) {
-        const fnEl = createElement('fn-author');
-        fnEl.innerHTML = node.innerHTML;
-        fnEl.setAttribute('kind', 'footnote');
-        const id = node.getAttribute('id');
-        if (id) {
-            fnEl.setAttribute('id', id);
-        }
-        element.append(fnEl);
-    },
-    appendParagraph(document, node, element) {
-        const pEl = document.createElementNS(null, 'p');
-        pEl.innerHTML = node.innerHTML;
-        element.append(pEl);
-    },
-    appendCorresp(node, element, createElement) {
-        var _a, _b;
-        const correspEl = createElement('corresp');
-        const label = node.querySelector('label');
-        if (label) {
-            label.remove();
-        }
-        correspEl.textContent = ((_a = node.textContent) === null || _a === void 0 ? void 0 : _a.trim()) || '';
-        correspEl.setAttribute('label', ((_b = label === null || label === void 0 ? void 0 : label.textContent) === null || _b === void 0 ? void 0 : _b.trim()) || '');
-        const id = node.getAttribute('id');
-        if (id) {
-            correspEl.setAttribute('id', id);
-        }
-        element.append(correspEl);
-    },
-    createContributors(front, createElement) {
-        const contribs = front.querySelectorAll('article-meta > contrib-group > contrib[contrib-type="author"]');
-        const contributors = createElement('contributors');
-        contribs.forEach((element, priority) => {
-            const contributor = this.createContributorElement(priority, createElement);
-            this.setNameAttrs(element, contributor);
-            this.setOrcidAttribute(element, contributor);
-            this.setIsCorrespondingAttribute(element, contributor);
-            this.setContributorReferences(element, contributor, createElement);
-            contributors.append(contributor);
-        });
-        return contributors;
-    },
-    createContributorElement(priority, createElement) {
-        const contributor = createElement('contributor');
-        contributor.setAttribute('priority', priority.toString());
-        contributor.setAttribute('role', 'author');
-        return contributor;
-    },
-    setNameAttrs(node, element) {
-        const given = getTrimmedTextContent(node, 'name > given-names');
-        if (given) {
-            element.setAttribute('given', given);
-        }
-        const surname = getTrimmedTextContent(node, 'name > surname');
-        if (surname) {
-            element.setAttribute('family', surname);
-        }
-    },
-    setOrcidAttribute(node, element) {
-        const orcid = getTrimmedTextContent(node, 'contrib-id[contrib-id-type="orcid"]');
-        if (orcid) {
-            element.setAttribute('ORCIDIdentifier', orcid);
-        }
-    },
-    setIsCorrespondingAttribute(node, element) {
-        const isCorresponding = node.getAttribute('corresp') === 'yes';
-        if (isCorresponding) {
-            element.setAttribute('isCorresponding', isCorresponding.toString());
-        }
-    },
-    setContributorReferences(node, element, createElement) {
-        const xrefs = node.querySelectorAll('xref');
-        const footnotes = createElement('fns');
-        const corresps = createElement('corresps');
-        const affs = createElement('affs');
-        xrefs.forEach((xref) => {
-            const rid = xref.getAttribute('rid');
-            const type = xref.getAttribute('ref-type');
-            if (rid) {
-                switch (type) {
-                    case 'fn':
-                        this.appendFootnoteID(xref, footnotes, rid, createElement);
-                        break;
-                    case 'corresp':
-                        this.appendCorrespID(xref, corresps, rid, createElement);
-                        break;
-                    case 'aff':
-                        this.appendAffiliationID(affs, rid, createElement);
-                        break;
-                }
-            }
-        });
-        element.append(footnotes, corresps, affs);
-    },
-    appendFootnoteID(xref, footnotes, rid, createElement) {
-        var _a;
-        const fn = createElement('fn');
-        fn.setAttribute('noteID', rid);
-        fn.setAttribute('noteLabel', ((_a = xref.textContent) === null || _a === void 0 ? void 0 : _a.trim()) || '');
-        footnotes.append(fn);
-    },
-    appendCorrespID(xref, corresps, rid, createElement) {
-        var _a;
-        const corresp = createElement('corresp');
-        corresp.setAttribute('correspID', rid);
-        corresp.setAttribute('correspLabel', ((_a = xref.textContent) === null || _a === void 0 ? void 0 : _a.trim()) || '');
-        corresps.append(corresp);
-    },
-    appendAffiliationID(affs, rid, createElement) {
-        const rids = rid.split(/\s+/).filter(Boolean);
-        if (rids.length) {
-            rids.forEach((affID) => {
-                const aff = createElement('aff');
-                aff.setAttribute('affiliationID', affID);
-                affs.append(aff);
-            });
-        }
-    },
-    createAffiliations(front, createElement) {
-        const affiliations = front.querySelectorAll('article-meta > contrib-group > aff');
-        const affiliationGroup = createElement('affiliations');
-        affiliations.forEach((element, priority) => {
-            const affiliation = this.createAffiliationElement(element, priority, createElement);
-            this.setInstitutionAttrs(element, affiliation);
-            this.setAddressAttrs(element, affiliation);
-            this.appendEmail(element, affiliation);
-            affiliationGroup.append(affiliation);
-        });
-        return affiliationGroup;
-    },
-    createAffiliationElement(element, priority, createElement) {
-        const affiliation = createElement('affiliation');
-        affiliation.setAttribute('priority', priority.toString());
-        const id = element.getAttribute('id');
-        if (id) {
-            affiliation.setAttribute('id', id);
-        }
-        return affiliation;
-    },
-    appendEmail(element, affiliation) {
-        const emailEl = element.querySelector('email');
-        if (emailEl) {
-            affiliation.appendChild(emailEl);
-        }
-    },
-    setInstitutionAttrs(element, affiliation) {
-        var _a;
-        for (const node of element.querySelectorAll('institution')) {
-            const content = (_a = node.textContent) === null || _a === void 0 ? void 0 : _a.trim();
-            if (!content) {
-                continue;
-            }
-            const type = node.getAttribute('content-type');
-            if (type === 'dept') {
-                affiliation.setAttribute('department', content);
-            }
-            else {
-                affiliation.setAttribute('institution', content);
-            }
-        }
-    },
-    setAddressAttrs(element, affiliation) {
-        const addressLine1 = getTrimmedTextContent(element, 'addr-line:nth-of-type(1)');
-        const addressLine2 = getTrimmedTextContent(element, 'addr-line:nth-of-type(2)');
-        const addressLine3 = getTrimmedTextContent(element, 'addr-line:nth-of-type(3)');
-        const postCode = getTrimmedTextContent(element, 'postal-code');
-        const country = getTrimmedTextContent(element, 'country');
-        if (addressLine1) {
-            affiliation.setAttribute('addressLine1', addressLine1);
-        }
-        if (addressLine2) {
-            affiliation.setAttribute('addressLine2', addressLine2);
-        }
-        if (addressLine3) {
-            affiliation.setAttribute('addressLine3', addressLine3);
-        }
-        if (postCode) {
-            affiliation.setAttribute('postCode', postCode);
-        }
-        if (country) {
-            affiliation.setAttribute('country', country);
-        }
-    },
-};

package/dist/types/jats/importer/jats-front-transformations.d.ts

@@ -1,38 +0,0 @@
-/*!
- * © 2024 Atypon Systems LLC
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *    http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-export declare const defaultTitle = "Untitled Manuscript";
-export declare const jatsFrontTransformations: {
-    setArticleAttrs(doc: Document, template?: string): void;
-    createTitle(front: Element, createElement: (tagName: string) => HTMLElement): Element;
-    createAuthorNotes(document: Document, createElement: (tagName: string) => HTMLElement): HTMLElement | undefined;
-    appendFootnote(node: Element, element: Element, createElement: (tagName: string) => HTMLElement): void;
-    appendParagraph(document: Document, node: Element, element: Element): void;
-    appendCorresp(node: Element, element: Element, createElement: (tagName: string) => HTMLElement): void;
-    createContributors(front: Element, createElement: (tagName: string) => HTMLElement): HTMLElement;
-    createContributorElement(priority: number, createElement: (tagName: string) => HTMLElement): HTMLElement;
-    setNameAttrs(node: Element, element: Element): void;
-    setOrcidAttribute(node: Element, element: Element): void;
-    setIsCorrespondingAttribute(node: Element, element: Element): void;
-    setContributorReferences(node: Element, element: Element, createElement: (tagName: string) => HTMLElement): void;
-    appendFootnoteID(xref: Element, footnotes: Element, rid: string, createElement: (tagName: string) => HTMLElement): void;
-    appendCorrespID(xref: Element, corresps: Element, rid: string, createElement: (tagName: string) => HTMLElement): void;
-    appendAffiliationID(affs: Element, rid: string, createElement: (tagName: string) => HTMLElement): void;
-    createAffiliations(front: Element, createElement: (tagName: string) => HTMLElement): HTMLElement;
-    createAffiliationElement(element: Element, priority: number, createElement: (tagName: string) => HTMLElement): HTMLElement;
-    appendEmail(element: Element, affiliation: Element): void;
-    setInstitutionAttrs(element: Element, affiliation: Element): void;
-    setAddressAttrs(element: Element, affiliation: Element): void;
-};